Query 021968
Match_columns 304
No_of_seqs 157 out of 761
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 12:01:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021968.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021968hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h08_A Putative hydrolase; GDS 86.0 0.78 2.7E-05 38.1 4.6 36 72-121 3-42 (200)
2 4hf7_A Putative acylhydrolase; 82.2 0.5 1.7E-05 40.0 1.7 15 98-112 25-39 (209)
3 3hp4_A GDSL-esterase; psychrot 77.3 0.72 2.5E-05 37.5 1.1 14 99-112 2-15 (185)
4 3rjt_A Lipolytic protein G-D-S 73.7 1.3 4.3E-05 36.6 1.7 15 98-112 7-21 (216)
5 1ivn_A Thioesterase I; hydrola 66.7 1.8 6.1E-05 35.4 1.1 15 99-113 1-15 (190)
6 3mil_A Isoamyl acetate-hydroly 66.2 1.9 6.5E-05 36.2 1.2 15 97-111 1-15 (240)
7 1yzf_A Lipase/acylhydrolase; s 65.0 2 7E-05 34.6 1.1 13 100-112 2-14 (195)
8 2q0q_A ARYL esterase; SGNH hyd 62.3 2.3 7.8E-05 35.2 1.0 33 234-268 164-198 (216)
9 2hsj_A Putative platelet activ 61.7 3.1 0.00011 34.4 1.7 16 98-113 33-48 (214)
10 3dc7_A Putative uncharacterize 59.3 3.4 0.00012 34.8 1.6 24 234-259 162-185 (232)
11 3dci_A Arylesterase; SGNH_hydr 59.2 2.8 9.5E-05 35.7 1.0 32 234-267 178-211 (232)
12 1fxw_F Alpha2, platelet-activa 57.9 4.2 0.00014 34.4 1.9 23 91-113 29-53 (229)
13 1vjg_A Putative lipase from th 57.6 2.6 9E-05 35.2 0.6 16 97-112 18-33 (218)
14 3p94_A GDSL-like lipase; serin 55.5 4.3 0.00015 33.1 1.5 14 100-113 23-36 (204)
15 1es9_A PAF-AH, platelet-activa 55.3 4.6 0.00016 34.1 1.7 22 92-113 29-52 (232)
16 3bzw_A Putative lipase; protei 54.0 4.8 0.00017 35.2 1.7 24 234-259 198-221 (274)
17 2vpt_A Lipolytic enzyme; ester 49.5 5.7 0.00019 33.2 1.3 14 99-112 5-18 (215)
18 2w9x_A AXE2A, CJCE2B, putative 47.0 7.2 0.00025 36.1 1.7 15 98-112 141-155 (366)
19 2waa_A Acetyl esterase, xylan 45.8 6.4 0.00022 36.2 1.1 15 98-112 131-145 (347)
20 2wao_A Endoglucanase E; plant 44.2 7 0.00024 35.7 1.2 15 98-112 121-135 (341)
21 1vcc_A DNA topoisomerase I; DN 41.9 3.6 0.00012 29.9 -0.9 15 100-114 55-70 (77)
22 3t6g_B Breast cancer anti-estr 39.3 1.2 4.1E-05 39.3 -4.6 16 97-112 144-159 (229)
23 1k7c_A Rhamnogalacturonan acet 38.6 9.8 0.00034 32.5 1.2 24 233-258 150-173 (233)
24 2o14_A Hypothetical protein YX 36.2 13 0.00045 34.6 1.7 24 233-258 296-319 (375)
25 3skv_A SSFX3; jelly roll, GDSL 35.2 12 0.00042 35.2 1.3 14 99-112 185-198 (385)
26 1fll_X B-cell surface antigen 28.0 19 0.00066 20.7 0.8 10 276-285 6-15 (26)
27 3grf_A Ornithine carbamoyltran 27.7 31 0.001 32.0 2.6 27 96-123 158-184 (328)
28 3tpf_A Otcase, ornithine carba 27.5 32 0.0011 31.5 2.7 25 97-123 143-168 (307)
29 4amu_A Ornithine carbamoyltran 27.1 34 0.0012 32.2 2.8 26 97-123 178-203 (365)
30 3r7f_A Aspartate carbamoyltran 25.0 35 0.0012 31.2 2.5 27 97-123 145-171 (304)
31 3q98_A Transcarbamylase; rossm 24.2 39 0.0013 32.2 2.7 27 97-123 189-220 (399)
32 3sds_A Ornithine carbamoyltran 23.6 37 0.0013 31.7 2.4 24 98-123 187-210 (353)
33 2yfk_A Aspartate/ornithine car 22.6 45 0.0016 31.9 2.8 28 97-124 186-218 (418)
34 2qru_A Uncharacterized protein 22.2 71 0.0024 27.2 3.8 23 99-121 95-117 (274)
35 4ep1_A Otcase, ornithine carba 21.6 43 0.0015 31.2 2.4 25 97-123 177-201 (340)
36 3csu_A Protein (aspartate carb 21.6 46 0.0016 30.5 2.6 28 97-124 152-179 (310)
37 4f2g_A Otcase 1, ornithine car 21.6 44 0.0015 30.6 2.4 25 97-123 152-176 (309)
38 1pg5_A Aspartate carbamoyltran 21.2 50 0.0017 30.1 2.7 28 97-124 147-174 (299)
39 3gd5_A Otcase, ornithine carba 21.2 45 0.0015 30.8 2.4 25 97-123 155-179 (323)
40 1oth_A Protein (ornithine tran 20.6 39 0.0013 31.2 1.8 25 97-123 153-177 (321)
41 4a8t_A Putrescine carbamoyltra 20.3 47 0.0016 30.9 2.3 25 97-123 173-197 (339)
No 1
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=86.04 E-value=0.78 Score=38.07 Aligned_cols=36 Identities=28% Similarity=0.707 Sum_probs=23.7
Q ss_pred cCcce--eeecC--CCCCCCCChHHHHHHhcCCcEEEEechhhHHHHHHHHHHh
Q 021968 72 MYLKY--RWKPT--SCKLPRFRGGVFLERFRGKRILFVGDSISLNQWQSLTCML 121 (304)
Q Consensus 72 ~y~~W--rWqP~--~C~Lp~fd~~~fl~~lrgkri~FVGDSl~Rnq~~SL~ClL 121 (304)
+|..| .|.|. .=++| ||+|+||||+..-...|..+|
T Consensus 3 ~~~ew~~~~~p~~~~~~~p--------------rVl~iGDSit~G~~~~l~~~l 42 (200)
T 4h08_A 3 EYIEWSDIWIPGANKTDLP--------------HVLLIGNSITRGYYGKVEAAL 42 (200)
T ss_dssp SSCCCEEEECTTTTCCSSC--------------EEEEEESHHHHHHHHHHHHHT
T ss_pred ceeehhhhccCCcccCCCC--------------eEEEEchhHHhhhHHHHHHHh
Confidence 57777 48775 33343 699999999986433444444
No 2
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=82.17 E-value=0.5 Score=39.97 Aligned_cols=15 Identities=33% Similarity=0.795 Sum_probs=13.1
Q ss_pred cCCcEEEEechhhHH
Q 021968 98 RGKRILFVGDSISLN 112 (304)
Q Consensus 98 rgkri~FVGDSl~Rn 112 (304)
.+++|+|+||||++.
T Consensus 25 ~~~~Iv~~GDSit~g 39 (209)
T 4hf7_A 25 KEKRVVFMGNXITEG 39 (209)
T ss_dssp GGCCEEEEESHHHHH
T ss_pred CCCeEEEECcHHHhC
Confidence 567899999999975
No 3
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=77.31 E-value=0.72 Score=37.47 Aligned_cols=14 Identities=36% Similarity=0.641 Sum_probs=12.6
Q ss_pred CCcEEEEechhhHH
Q 021968 99 GKRILFVGDSISLN 112 (304)
Q Consensus 99 gkri~FVGDSl~Rn 112 (304)
|+||+|+|||++..
T Consensus 2 ~~~i~~~GDSit~G 15 (185)
T 3hp4_A 2 DNTILILGDXLSAA 15 (185)
T ss_dssp CEEEEEEECTTTTT
T ss_pred CCeEEEECCccccc
Confidence 78999999999974
No 4
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=73.70 E-value=1.3 Score=36.56 Aligned_cols=15 Identities=40% Similarity=0.696 Sum_probs=13.2
Q ss_pred cCCcEEEEechhhHH
Q 021968 98 RGKRILFVGDSISLN 112 (304)
Q Consensus 98 rgkri~FVGDSl~Rn 112 (304)
.++||+|+|||++..
T Consensus 7 ~~~~i~~~GDSit~g 21 (216)
T 3rjt_A 7 PGSKLVMVGDSITDC 21 (216)
T ss_dssp TTCEEEEEESHHHHT
T ss_pred CCCEEEEEecccccc
Confidence 578999999999965
No 5
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=66.67 E-value=1.8 Score=35.40 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=12.6
Q ss_pred CCcEEEEechhhHHH
Q 021968 99 GKRILFVGDSISLNQ 113 (304)
Q Consensus 99 gkri~FVGDSl~Rnq 113 (304)
.|+|+|+|||++...
T Consensus 1 ~~~i~~~GDSit~g~ 15 (190)
T 1ivn_A 1 ADTLLILGDSLSAGY 15 (190)
T ss_dssp CEEEEEEECHHHHCS
T ss_pred CCcEEEEecCcccCC
Confidence 368999999999863
No 6
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=66.23 E-value=1.9 Score=36.22 Aligned_cols=15 Identities=33% Similarity=0.545 Sum_probs=12.8
Q ss_pred hcCCcEEEEechhhH
Q 021968 97 FRGKRILFVGDSISL 111 (304)
Q Consensus 97 lrgkri~FVGDSl~R 111 (304)
|.-+||+|+|||++.
T Consensus 1 ~~~~~i~~~GDSit~ 15 (240)
T 3mil_A 1 MDYEKFLLFGDSITE 15 (240)
T ss_dssp CCCEEEEEEESHHHH
T ss_pred CCcccEEEEccchhh
Confidence 345799999999998
No 7
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=64.96 E-value=2 Score=34.60 Aligned_cols=13 Identities=38% Similarity=0.807 Sum_probs=11.8
Q ss_pred CcEEEEechhhHH
Q 021968 100 KRILFVGDSISLN 112 (304)
Q Consensus 100 kri~FVGDSl~Rn 112 (304)
|+|+|+|||++..
T Consensus 2 ~~i~~~GDS~t~g 14 (195)
T 1yzf_A 2 RKIVLFGDSITAG 14 (195)
T ss_dssp EEEEEEESHHHHC
T ss_pred CeEEEEccccccC
Confidence 5799999999987
No 8
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=62.26 E-value=2.3 Score=35.22 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhcCceEEeecccccc-cccCC-CCCC
Q 021968 234 AEAIVENVVRKISKKVRLLNVTTLSQ-LRKDG-HPSA 268 (304)
Q Consensus 234 ~~~~v~~~~~~~~~~v~lLdiT~ls~-~R~Dg-Hpg~ 268 (304)
.+++++++.++. ++.++|+..... +..|+ ||+.
T Consensus 164 ~n~~~~~~a~~~--~v~~iD~~~~~~~~~~Dg~Hpn~ 198 (216)
T 2q0q_A 164 LARVYSALASFM--KVPFFDAGSVISTDGVDGIHFTE 198 (216)
T ss_dssp HHHHHHHHHHHH--TCCEEEGGGTCCCCSTTSSSCCH
T ss_pred HHHHHHHHHHHc--CCcEEchhHhcccCCCCccCcCH
Confidence 355666666554 488999987653 44553 6553
No 9
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=61.71 E-value=3.1 Score=34.39 Aligned_cols=16 Identities=44% Similarity=0.534 Sum_probs=13.6
Q ss_pred cCCcEEEEechhhHHH
Q 021968 98 RGKRILFVGDSISLNQ 113 (304)
Q Consensus 98 rgkri~FVGDSl~Rnq 113 (304)
...+|+|+|||++...
T Consensus 33 ~~~~i~~~GDSit~g~ 48 (214)
T 2hsj_A 33 VEPNILFIGDSIVEYY 48 (214)
T ss_dssp SCCSEEEEESHHHHTC
T ss_pred ccCCEEEEecchhcCC
Confidence 4778999999999863
No 10
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=59.30 E-value=3.4 Score=34.81 Aligned_cols=24 Identities=17% Similarity=0.110 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhcCceEEeecccccc
Q 021968 234 AEAIVENVVRKISKKVRLLNVTTLSQ 259 (304)
Q Consensus 234 ~~~~v~~~~~~~~~~v~lLdiT~ls~ 259 (304)
.+++++++.++. .+.++|+...+.
T Consensus 162 ~~~~i~~~a~~~--~v~~iD~~~~~~ 185 (232)
T 3dc7_A 162 YEAAIAQMTADY--GVPHLSLYRDAG 185 (232)
T ss_dssp HHHHHHHHHHHH--TCCEEEHHHHSS
T ss_pred HHHHHHHHHHHc--CCcEEecccccC
Confidence 456777776655 488999987754
No 11
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=59.20 E-value=2.8 Score=35.69 Aligned_cols=32 Identities=9% Similarity=0.266 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhcCceEEeecccccc-cccCC-CCC
Q 021968 234 AEAIVENVVRKISKKVRLLNVTTLSQ-LRKDG-HPS 267 (304)
Q Consensus 234 ~~~~v~~~~~~~~~~v~lLdiT~ls~-~R~Dg-Hpg 267 (304)
.+++++++.++. .+.++|+..+.. +-+|+ ||+
T Consensus 178 ~~~~~~~~a~~~--~v~~iD~~~~~~~~~~DgvHpn 211 (232)
T 3dci_A 178 LAPLYRKLAAEL--GHHFFDAGSVASASPVDGVHLD 211 (232)
T ss_dssp HHHHHHHHHHHH--TCEEEEGGGTCCCCTTTSSSCC
T ss_pred HHHHHHHHHHHh--CCeEEcchHhcCcccCCCCCcC
Confidence 456777776654 488999876542 33444 554
No 12
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=57.87 E-value=4.2 Score=34.45 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=17.2
Q ss_pred HHHHHHh--cCCcEEEEechhhHHH
Q 021968 91 GVFLERF--RGKRILFVGDSISLNQ 113 (304)
Q Consensus 91 ~~fl~~l--rgkri~FVGDSl~Rnq 113 (304)
+.|.+.. ...+|+|+|||++...
T Consensus 29 ~~~~~~~~~~~~~i~~~GDSit~g~ 53 (229)
T 1fxw_F 29 NRFVLDCKDKEPDVLFVGDSMVQLM 53 (229)
T ss_dssp HHHHHHHHHCCCSEEEEESHHHHGG
T ss_pred HHHHHHcccCCCCEEEEecchhcCC
Confidence 4455543 5778999999999864
No 13
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=57.60 E-value=2.6 Score=35.18 Aligned_cols=16 Identities=44% Similarity=0.457 Sum_probs=13.9
Q ss_pred hcCCcEEEEechhhHH
Q 021968 97 FRGKRILFVGDSISLN 112 (304)
Q Consensus 97 lrgkri~FVGDSl~Rn 112 (304)
...++|+|+|||++..
T Consensus 18 ~~~~~i~~lGDSit~g 33 (218)
T 1vjg_A 18 KTQIRICFVGDSFVNG 33 (218)
T ss_dssp CEEEEEEEEESHHHHT
T ss_pred CCCceEEEEccccccC
Confidence 4678899999999986
No 14
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=55.50 E-value=4.3 Score=33.10 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=12.0
Q ss_pred CcEEEEechhhHHH
Q 021968 100 KRILFVGDSISLNQ 113 (304)
Q Consensus 100 kri~FVGDSl~Rnq 113 (304)
++|+|+|||++..-
T Consensus 23 ~~i~~~GDSit~g~ 36 (204)
T 3p94_A 23 SNVVFMGNSITDGW 36 (204)
T ss_dssp EEEEEEESHHHHTH
T ss_pred ceEEEEccchhhcc
Confidence 38999999999764
No 15
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=55.34 E-value=4.6 Score=34.13 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=16.5
Q ss_pred HHHHHh--cCCcEEEEechhhHHH
Q 021968 92 VFLERF--RGKRILFVGDSISLNQ 113 (304)
Q Consensus 92 ~fl~~l--rgkri~FVGDSl~Rnq 113 (304)
.|++.. ...+|+|+|||++...
T Consensus 29 ~~~~~~~~~~~~i~~~GDSit~g~ 52 (232)
T 1es9_A 29 RFVADSKDKEPEVVFIGDSLVQLM 52 (232)
T ss_dssp HHHHHHHHCCCSEEEEESHHHHTH
T ss_pred HHHHHhccCCCCEEEEechHhhcc
Confidence 444433 5678999999999984
No 16
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=54.04 E-value=4.8 Score=35.19 Aligned_cols=24 Identities=0% Similarity=0.068 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhhcCceEEeecccccc
Q 021968 234 AEAIVENVVRKISKKVRLLNVTTLSQ 259 (304)
Q Consensus 234 ~~~~v~~~~~~~~~~v~lLdiT~ls~ 259 (304)
.+++++++.++. .+.++|+..++.
T Consensus 198 ~n~~i~~~a~~~--~v~~vD~~~~~~ 221 (274)
T 3bzw_A 198 YVQAIKEAGNIW--GIPVIDFNAVTG 221 (274)
T ss_dssp HHHHHHHHHHHH--TCCEECHHHHTC
T ss_pred HHHHHHHHHHHc--CCCEEcchhhhc
Confidence 466777776654 489999988664
No 17
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=49.50 E-value=5.7 Score=33.18 Aligned_cols=14 Identities=36% Similarity=0.415 Sum_probs=11.8
Q ss_pred CCcEEEEechhhHH
Q 021968 99 GKRILFVGDSISLN 112 (304)
Q Consensus 99 gkri~FVGDSl~Rn 112 (304)
..+|+|+|||++..
T Consensus 5 ~~~i~~~GDSit~G 18 (215)
T 2vpt_A 5 TIKIMPVGDSCTEG 18 (215)
T ss_dssp EEEEEEEESHHHHT
T ss_pred ceEEEecccccccC
Confidence 34799999999975
No 18
>2w9x_A AXE2A, CJCE2B, putative acetyl xylan esterase; carbohydrate esterase family 2, hydrolase; 2.00A {Cellvibrio japonicus}
Probab=46.99 E-value=7.2 Score=36.10 Aligned_cols=15 Identities=40% Similarity=0.829 Sum_probs=12.8
Q ss_pred cCCcEEEEechhhHH
Q 021968 98 RGKRILFVGDSISLN 112 (304)
Q Consensus 98 rgkri~FVGDSl~Rn 112 (304)
..++|+|+||||+-.
T Consensus 141 ~~~~I~~iGDSIT~G 155 (366)
T 2w9x_A 141 RKRQIEFIGDSFTVG 155 (366)
T ss_dssp CCCEEEEEESHHHHT
T ss_pred CCceEEEEecccccc
Confidence 567899999999964
No 19
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus}
Probab=45.81 E-value=6.4 Score=36.18 Aligned_cols=15 Identities=33% Similarity=0.676 Sum_probs=12.9
Q ss_pred cCCcEEEEechhhHH
Q 021968 98 RGKRILFVGDSISLN 112 (304)
Q Consensus 98 rgkri~FVGDSl~Rn 112 (304)
..++|+|+||||+..
T Consensus 131 ~~~~I~~iGDSIT~G 145 (347)
T 2waa_A 131 PQRKILVLGDSVTCG 145 (347)
T ss_dssp CSEEEEEEESTTTTT
T ss_pred CCceEEEeecccccc
Confidence 567899999999965
No 20
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A*
Probab=44.23 E-value=7 Score=35.66 Aligned_cols=15 Identities=40% Similarity=0.687 Sum_probs=12.8
Q ss_pred cCCcEEEEechhhHH
Q 021968 98 RGKRILFVGDSISLN 112 (304)
Q Consensus 98 rgkri~FVGDSl~Rn 112 (304)
..++|+|+|||++-.
T Consensus 121 ~~~~I~~iGDSiT~G 135 (341)
T 2wao_A 121 LERKIEFIGDSITCA 135 (341)
T ss_dssp CSEEEEEEESHHHHT
T ss_pred CCceEEEEccccccC
Confidence 467899999999965
No 21
>1vcc_A DNA topoisomerase I; DNA binding; HET: DNA; 1.60A {Vaccinia virus} SCOP: d.121.1.1
Probab=41.93 E-value=3.6 Score=29.87 Aligned_cols=15 Identities=47% Similarity=0.833 Sum_probs=11.8
Q ss_pred CcEEEEe-chhhHHHH
Q 021968 100 KRILFVG-DSISLNQW 114 (304)
Q Consensus 100 kri~FVG-DSl~Rnq~ 114 (304)
.+++||| ||-+|-||
T Consensus 55 ~~lIfvG~DSKgrkQY 70 (77)
T 1vcc_A 55 TRLIFVGSDSKGRRQY 70 (77)
T ss_dssp TSEEEEEECTTSCEEE
T ss_pred CceEEEeecCCCceee
Confidence 4599999 88887765
No 22
>3t6g_B Breast cancer anti-estrogen resistance protein 1; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}
Probab=39.29 E-value=1.2 Score=39.31 Aligned_cols=16 Identities=25% Similarity=0.762 Sum_probs=13.4
Q ss_pred hcCCcEEEEechhhHH
Q 021968 97 FRGKRILFVGDSISLN 112 (304)
Q Consensus 97 lrgkri~FVGDSl~Rn 112 (304)
|.+.++|||||.+.|+
T Consensus 144 lsAHKLVfIGDTL~r~ 159 (229)
T 3t6g_B 144 LSAHKLVFIGDTLSRQ 159 (229)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred EEeeeeeeecchHHHh
Confidence 3567899999999985
No 23
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=38.61 E-value=9.8 Score=32.50 Aligned_cols=24 Identities=8% Similarity=-0.071 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHhhcCceEEeeccccc
Q 021968 233 PAEAIVENVVRKISKKVRLLNVTTLS 258 (304)
Q Consensus 233 ~~~~~v~~~~~~~~~~v~lLdiT~ls 258 (304)
..+++++++.++. .+.++|+..++
T Consensus 150 ~y~~~~~~vA~~~--~v~~iD~~~~~ 173 (233)
T 1k7c_A 150 RFVEYAELAAEVA--GVEYVDHWSYV 173 (233)
T ss_dssp HHHHHHHHHHHHH--TCEEECHHHHH
T ss_pred HHHHHHHHHHHHh--CCeEEecHHHH
Confidence 4567777777665 48999987654
No 24
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=36.20 E-value=13 Score=34.58 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHhhcCceEEeeccccc
Q 021968 233 PAEAIVENVVRKISKKVRLLNVTTLS 258 (304)
Q Consensus 233 ~~~~~v~~~~~~~~~~v~lLdiT~ls 258 (304)
..+++++++.++. ++.++|+..++
T Consensus 296 ~~~~~i~~lA~~~--~v~~iDl~~~~ 319 (375)
T 2o14_A 296 WYRASILALAEEE--KTYLIDLNVLS 319 (375)
T ss_dssp TTHHHHHHHHHHT--TCEEECHHHHH
T ss_pred HHHHHHHHHHHHc--CCeEEehHHHH
Confidence 3466777776653 59999998754
No 25
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=35.21 E-value=12 Score=35.19 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=12.0
Q ss_pred CCcEEEEechhhHH
Q 021968 99 GKRILFVGDSISLN 112 (304)
Q Consensus 99 gkri~FVGDSl~Rn 112 (304)
.++|+|+||||+..
T Consensus 185 ~~~Iv~~GDSiT~G 198 (385)
T 3skv_A 185 KPHWIHYGDSICHG 198 (385)
T ss_dssp CCEEEEEECSSCTT
T ss_pred CceEEEEeccccCC
Confidence 68899999999753
No 26
>1fll_X B-cell surface antigen CD40; TRAF3 with CD40 peptide, TNF signaling, apoptosis; 3.50A {Homo sapiens}
Probab=28.00 E-value=19 Score=20.67 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=8.7
Q ss_pred CCCccccccC
Q 021968 276 ATDCSHWCLP 285 (304)
Q Consensus 276 ~~DC~HWCLP 285 (304)
.+|-+|||+|
T Consensus 6 vqeTl~~~qP 15 (26)
T 1fll_X 6 VQETLHGSQP 15 (26)
T ss_dssp CCCCCCCSSS
T ss_pred hhHHhhcCcc
Confidence 4789999998
No 27
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=27.66 E-value=31 Score=31.97 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=22.5
Q ss_pred HhcCCcEEEEechhhHHHHHHHHHHhhh
Q 021968 96 RFRGKRILFVGDSISLNQWQSLTCMLHL 123 (304)
Q Consensus 96 ~lrgkri~FVGDSl~Rnq~~SL~ClL~~ 123 (304)
.+.|.+|+||||-.+ |.-.|++..+..
T Consensus 158 ~l~gl~va~vGD~~~-~va~Sl~~~~~~ 184 (328)
T 3grf_A 158 GFKGIKFAYCGDSMN-NVTYDLMRGCAL 184 (328)
T ss_dssp TGGGCCEEEESCCSS-HHHHHHHHHHHH
T ss_pred ccCCcEEEEeCCCCc-chHHHHHHHHHH
Confidence 477899999999766 688899888864
No 28
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=27.46 E-value=32 Score=31.54 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=20.6
Q ss_pred hc-CCcEEEEechhhHHHHHHHHHHhhh
Q 021968 97 FR-GKRILFVGDSISLNQWQSLTCMLHL 123 (304)
Q Consensus 97 lr-gkri~FVGDSl~Rnq~~SL~ClL~~ 123 (304)
++ |++|+|||| . -|.-.|++..+..
T Consensus 143 l~~gl~va~vGD-~-~~va~Sl~~~~~~ 168 (307)
T 3tpf_A 143 QNGIAKVAFIGD-S-NNMCNSWLITAAI 168 (307)
T ss_dssp GGGCCEEEEESC-S-SHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcC-C-CccHHHHHHHHHH
Confidence 56 999999999 3 4688899888864
No 29
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=27.06 E-value=34 Score=32.23 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=21.6
Q ss_pred hcCCcEEEEechhhHHHHHHHHHHhhh
Q 021968 97 FRGKRILFVGDSISLNQWQSLTCMLHL 123 (304)
Q Consensus 97 lrgkri~FVGDSl~Rnq~~SL~ClL~~ 123 (304)
++|++|+||||-.+ |.-.||+.++..
T Consensus 178 l~glkva~vGD~~n-nva~Sl~~~~~~ 203 (365)
T 4amu_A 178 LKNKKIVFIGDYKN-NVGVSTMIGAAF 203 (365)
T ss_dssp CTTCEEEEESSTTS-HHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCc-chHHHHHHHHHH
Confidence 57999999999766 588899888763
No 30
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=24.99 E-value=35 Score=31.23 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=21.8
Q ss_pred hcCCcEEEEechhhHHHHHHHHHHhhh
Q 021968 97 FRGKRILFVGDSISLNQWQSLTCMLHL 123 (304)
Q Consensus 97 lrgkri~FVGDSl~Rnq~~SL~ClL~~ 123 (304)
++|.+|+||||-..-|.-.|++..+..
T Consensus 145 l~glkva~vGD~~~~rva~Sl~~~~~~ 171 (304)
T 3r7f_A 145 FKGLTVSIHGDIKHSRVARSNAEVLTR 171 (304)
T ss_dssp CTTCEEEEESCCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCcchHHHHHHHHHH
Confidence 579999999996655788888887764
No 31
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}
Probab=24.22 E-value=39 Score=32.16 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=20.2
Q ss_pred hcCCcEEEEec---hhhH--HHHHHHHHHhhh
Q 021968 97 FRGKRILFVGD---SISL--NQWQSLTCMLHL 123 (304)
Q Consensus 97 lrgkri~FVGD---Sl~R--nq~~SL~ClL~~ 123 (304)
++|++|+|||| |.+| |.-.|++..+..
T Consensus 189 l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~ 220 (399)
T 3q98_A 189 LKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTR 220 (399)
T ss_dssp GTTCEEEEECCCCSSCCCCTHHHHHHHHHHGG
T ss_pred cCCCEEEEEEecccccCcchHHHHHHHHHHHH
Confidence 46789999998 3344 778898887764
No 32
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=23.58 E-value=37 Score=31.74 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=20.2
Q ss_pred cCCcEEEEechhhHHHHHHHHHHhhh
Q 021968 98 RGKRILFVGDSISLNQWQSLTCMLHL 123 (304)
Q Consensus 98 rgkri~FVGDSl~Rnq~~SL~ClL~~ 123 (304)
+|.+|+||||- .|...|++.+|..
T Consensus 187 ~glkva~vGD~--~nva~Sl~~~l~~ 210 (353)
T 3sds_A 187 EGLKIAWVGDA--NNVLFDLAIAATK 210 (353)
T ss_dssp TTCEEEEESCC--CHHHHHHHHHHHH
T ss_pred CCCEEEEECCC--chHHHHHHHHHHH
Confidence 78999999997 3688899888864
No 33
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=22.64 E-value=45 Score=31.92 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=21.5
Q ss_pred hcCCcEEEEec---hhhH--HHHHHHHHHhhhc
Q 021968 97 FRGKRILFVGD---SISL--NQWQSLTCMLHLA 124 (304)
Q Consensus 97 lrgkri~FVGD---Sl~R--nq~~SL~ClL~~~ 124 (304)
++|++|++||| |.+| |.-.|++.+|..-
T Consensus 186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~l 218 (418)
T 2yfk_A 186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRL 218 (418)
T ss_dssp GTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGG
T ss_pred cCCCEEEEEeccccccCccchHHHHHHHHHHHc
Confidence 56889999987 3456 7888988887643
No 34
>2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis}
Probab=22.16 E-value=71 Score=27.18 Aligned_cols=23 Identities=22% Similarity=0.079 Sum_probs=19.8
Q ss_pred CCcEEEEechhhHHHHHHHHHHh
Q 021968 99 GKRILFVGDSISLNQWQSLTCML 121 (304)
Q Consensus 99 gkri~FVGDSl~Rnq~~SL~ClL 121 (304)
.++|+++|||.+=+.-..++..+
T Consensus 95 ~~~i~l~G~SaGG~lA~~~a~~~ 117 (274)
T 2qru_A 95 NQSFGLCGRSAGGYLMLQLTKQL 117 (274)
T ss_dssp TCCEEEEEETHHHHHHHHHHHHH
T ss_pred CCcEEEEEECHHHHHHHHHHHHH
Confidence 67899999999999988877544
No 35
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=21.64 E-value=43 Score=31.16 Aligned_cols=25 Identities=32% Similarity=0.479 Sum_probs=20.7
Q ss_pred hcCCcEEEEechhhHHHHHHHHHHhhh
Q 021968 97 FRGKRILFVGDSISLNQWQSLTCMLHL 123 (304)
Q Consensus 97 lrgkri~FVGDSl~Rnq~~SL~ClL~~ 123 (304)
++|++|+||||- -|.-.|++..+..
T Consensus 177 l~glkva~vGD~--~nva~Sl~~~~~~ 201 (340)
T 4ep1_A 177 FKGIKLAYVGDG--NNVCHSLLLASAK 201 (340)
T ss_dssp CTTCEEEEESCC--CHHHHHHHHHHHH
T ss_pred CCCCEEEEECCC--chhHHHHHHHHHH
Confidence 579999999996 4588899888764
No 36
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=21.63 E-value=46 Score=30.49 Aligned_cols=28 Identities=25% Similarity=0.140 Sum_probs=22.2
Q ss_pred hcCCcEEEEechhhHHHHHHHHHHhhhc
Q 021968 97 FRGKRILFVGDSISLNQWQSLTCMLHLA 124 (304)
Q Consensus 97 lrgkri~FVGDSl~Rnq~~SL~ClL~~~ 124 (304)
++|++|+||||-..-|...|++..+..-
T Consensus 152 l~gl~va~vGD~~~~rva~Sl~~~~~~~ 179 (310)
T 3csu_A 152 LDNLHVAMVGDLKYGRTVHSLTQALAKF 179 (310)
T ss_dssp SSSCEEEEESCTTTCHHHHHHHHHHHTS
T ss_pred cCCcEEEEECCCCCCchHHHHHHHHHhC
Confidence 5799999999965446888998887643
No 37
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=21.56 E-value=44 Score=30.63 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=20.8
Q ss_pred hcCCcEEEEechhhHHHHHHHHHHhhh
Q 021968 97 FRGKRILFVGDSISLNQWQSLTCMLHL 123 (304)
Q Consensus 97 lrgkri~FVGDSl~Rnq~~SL~ClL~~ 123 (304)
++|++|+||||- -|.-.|++..+..
T Consensus 152 l~glkva~vGD~--~~va~Sl~~~~~~ 176 (309)
T 4f2g_A 152 IRGKTVAWVGDA--NNMLYTWIQAARI 176 (309)
T ss_dssp CTTCEEEEESCC--CHHHHHHHHHHHH
T ss_pred CCCCEEEEECCC--cchHHHHHHHHHH
Confidence 579999999994 4588899888864
No 38
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=21.25 E-value=50 Score=30.11 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=22.2
Q ss_pred hcCCcEEEEechhhHHHHHHHHHHhhhc
Q 021968 97 FRGKRILFVGDSISLNQWQSLTCMLHLA 124 (304)
Q Consensus 97 lrgkri~FVGDSl~Rnq~~SL~ClL~~~ 124 (304)
++|.+|+||||-..-|...|++-.+..-
T Consensus 147 l~gl~va~vGD~~~~rva~Sl~~~~~~~ 174 (299)
T 1pg5_A 147 IDGLVFALLGDLKYARTVNSLLRILTRF 174 (299)
T ss_dssp STTCEEEEEECCSSCHHHHHHHHHGGGS
T ss_pred cCCcEEEEECCCCCCchHHHHHHHHHhC
Confidence 5799999999976546888998887643
No 39
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=21.23 E-value=45 Score=30.79 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=20.6
Q ss_pred hcCCcEEEEechhhHHHHHHHHHHhhh
Q 021968 97 FRGKRILFVGDSISLNQWQSLTCMLHL 123 (304)
Q Consensus 97 lrgkri~FVGDSl~Rnq~~SL~ClL~~ 123 (304)
++|++|+||||- -|.-.|++..+..
T Consensus 155 l~glkva~vGD~--~rva~Sl~~~~~~ 179 (323)
T 3gd5_A 155 LAGLKLAYVGDG--NNVAHSLLLGCAK 179 (323)
T ss_dssp CTTCEEEEESCC--CHHHHHHHHHHHH
T ss_pred CCCCEEEEECCC--CcHHHHHHHHHHH
Confidence 579999999997 5778898887753
No 40
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=20.64 E-value=39 Score=31.16 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=20.0
Q ss_pred hcCCcEEEEechhhHHHHHHHHHHhhh
Q 021968 97 FRGKRILFVGDSISLNQWQSLTCMLHL 123 (304)
Q Consensus 97 lrgkri~FVGDSl~Rnq~~SL~ClL~~ 123 (304)
+.|.+|+||||- .|.-.|++-.+..
T Consensus 153 l~gl~va~vGD~--~~va~Sl~~~~~~ 177 (321)
T 1oth_A 153 LKGLTLSWIGDG--NNILHSIMMSAAK 177 (321)
T ss_dssp CTTCEEEEESCS--SHHHHHHHTTTGG
T ss_pred cCCcEEEEECCc--hhhHHHHHHHHHH
Confidence 579999999994 3688898877664
No 41
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=20.28 E-value=47 Score=30.86 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=20.4
Q ss_pred hcCCcEEEEechhhHHHHHHHHHHhhh
Q 021968 97 FRGKRILFVGDSISLNQWQSLTCMLHL 123 (304)
Q Consensus 97 lrgkri~FVGDSl~Rnq~~SL~ClL~~ 123 (304)
++|++|+||||- -|.-.|++..+..
T Consensus 173 l~glkva~vGD~--~rva~Sl~~~~~~ 197 (339)
T 4a8t_A 173 LEDCKVVFVGDA--TQVCFSLGLITTK 197 (339)
T ss_dssp GGGCEEEEESSC--CHHHHHHHHHHHH
T ss_pred CCCCEEEEECCC--chhHHHHHHHHHH
Confidence 567899999997 5678899888764
Done!