Query 021971
Match_columns 304
No_of_seqs 220 out of 1433
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 07:02:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02594 phosphatidate cytidyl 100.0 4.6E-88 1E-92 645.0 31.8 304 1-304 35-342 (342)
2 KOG1440 CDP-diacylglycerol syn 100.0 2.9E-84 6.3E-89 625.1 24.7 293 1-300 134-431 (432)
3 PRK11624 cdsA CDP-diglyceride 100.0 9.6E-45 2.1E-49 341.9 20.3 131 88-260 149-280 (285)
4 PLN02953 phosphatidate cytidyl 100.0 1.3E-40 2.9E-45 322.4 21.0 134 88-263 266-399 (403)
5 COG0575 CdsA CDP-diglyceride s 100.0 1.1E-40 2.4E-45 310.8 19.4 132 87-261 130-262 (265)
6 PF01148 CTP_transf_1: Cytidyl 100.0 8.5E-39 1.8E-43 290.1 20.8 159 62-261 100-259 (259)
7 COG4589 Predicted CDP-diglycer 100.0 2.5E-37 5.5E-42 283.3 19.6 183 33-261 109-301 (303)
8 PRK04032 hypothetical protein; 99.9 4.9E-27 1.1E-31 204.3 10.9 102 110-259 22-124 (159)
9 PF01864 DUF46: Putative integ 99.7 4.2E-16 9E-21 138.1 11.7 125 89-257 7-139 (175)
10 KOG4453 Predicted ER membrane 97.6 0.00031 6.8E-09 65.0 8.5 50 99-150 165-214 (269)
11 COG0170 SEC59 Dolichol kinase 97.2 0.002 4.3E-08 59.1 8.7 48 98-146 121-168 (216)
12 KOG2468 Dolichol kinase [Lipid 94.2 0.039 8.4E-07 55.9 3.4 43 102-146 421-463 (510)
13 COG1836 Predicted membrane pro 53.7 2E+02 0.0044 27.3 11.7 47 99-145 129-184 (247)
14 PF11283 DUF3084: Protein of u 49.7 14 0.00031 29.1 2.3 27 101-127 11-42 (79)
15 PF01741 MscL: Large-conductan 49.1 66 0.0014 27.4 6.5 82 211-299 33-128 (128)
16 PF01940 DUF92: Integral membr 49.0 2.3E+02 0.0049 26.4 11.6 53 95-147 111-172 (226)
17 COG0575 CdsA CDP-diglyceride s 43.2 65 0.0014 30.2 6.1 56 202-257 134-193 (265)
18 PF11460 DUF3007: Protein of u 43.0 79 0.0017 26.2 5.8 21 273-293 83-103 (104)
19 PRK10666 ammonium transporter; 39.2 19 0.00041 36.6 2.0 38 198-238 304-341 (428)
20 KOG1440 CDP-diacylglycerol syn 38.5 19 0.00041 36.5 1.8 43 94-136 271-313 (432)
21 TIGR00297 conserved hypothetic 38.4 2.4E+02 0.0053 26.5 9.1 48 97-144 118-174 (237)
22 TIGR00836 amt ammonium transpo 35.4 14 0.0003 37.2 0.3 38 198-238 280-317 (403)
23 TIGR03644 marine_trans_1 proba 32.7 22 0.00047 35.9 1.2 37 198-238 294-330 (404)
24 cd02572 PseudoU_synth_hDyskeri 32.6 26 0.00057 31.4 1.6 26 219-249 20-45 (182)
25 PRK02868 hypothetical protein; 32.2 89 0.0019 29.6 5.1 19 273-291 60-78 (245)
26 COG0004 AmtB Ammonia permease 31.0 65 0.0014 32.7 4.2 38 198-238 281-318 (409)
27 PRK10236 hypothetical protein; 29.3 66 0.0014 30.4 3.7 28 269-296 118-145 (237)
28 PF09720 Unstab_antitox: Putat 27.8 61 0.0013 22.9 2.6 20 279-298 1-20 (54)
29 PF04868 PDE6_gamma: Retinal c 26.9 39 0.00085 26.6 1.5 19 225-243 41-59 (83)
30 PRK00989 truB tRNA pseudouridi 26.5 39 0.00084 31.7 1.6 27 218-249 26-52 (230)
31 TIGR02574 stabl_TIGR02574 puta 26.3 68 0.0015 23.6 2.6 20 279-298 2-21 (63)
32 PF01509 TruB_N: TruB family p 25.7 23 0.0005 30.7 0.0 22 222-248 1-22 (149)
33 PF00909 Ammonium_transp: Ammo 25.0 1.8E+02 0.004 28.8 6.2 38 198-238 275-312 (399)
34 PRK04099 truB tRNA pseudouridi 24.5 42 0.00091 32.2 1.5 27 218-249 19-45 (273)
35 PF09150 Carot_N: Orange carot 24.1 94 0.002 27.6 3.5 25 269-294 58-82 (159)
36 COG4956 Integral membrane prot 22.9 4.1E+02 0.0089 26.4 7.9 28 122-149 36-63 (356)
37 PRK00020 truB tRNA pseudouridi 22.3 52 0.0011 31.1 1.6 26 219-249 28-53 (244)
38 PF06858 NOG1: Nucleolar GTP-b 21.7 76 0.0016 23.6 2.1 21 280-300 29-49 (58)
39 TIGR03092 SASP_sspI small, aci 21.1 1.5E+02 0.0033 22.6 3.6 28 269-296 37-64 (65)
40 COG4803 Predicted membrane pro 21.1 1.1E+02 0.0024 27.2 3.3 34 261-294 121-162 (170)
41 PRK14122 tRNA pseudouridine sy 21.0 58 0.0012 31.9 1.7 25 219-248 19-43 (312)
42 PF14098 SSPI: Small, acid-sol 20.5 1.5E+02 0.0032 22.6 3.4 27 269-295 38-64 (65)
No 1
>PLN02594 phosphatidate cytidylyltransferase
Probab=100.00 E-value=4.6e-88 Score=644.95 Aligned_cols=304 Identities=85% Similarity=1.449 Sum_probs=291.3
Q ss_pred CeeeehHHHHHHHHHhhcchhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHH
Q 021971 1 MLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSS 80 (304)
Q Consensus 1 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~ly~~~~v~fvlsL~k~~~~~~~~~~~~t~~~ll~v~~~~~ 80 (304)
+||+|||++.+++.+.+.+++.+..++.++++||+++||++|++|+++||++|+|+++++|+.+++||++++++++.+++
T Consensus 35 ~~~~yg~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~isf~ly~~gfv~FvlsL~k~~~k~qf~~~a~t~~~llyV~~~~~ 114 (342)
T PLN02594 35 MFFVYGRFLKQQLVNTVTSDKFLYRLVSGLIKYHMAICYSLYIAGFVWFILTLKKGMYKYQFGQYAWTHMILIVVFTQSS 114 (342)
T ss_pred HHHHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhhchhHhhhhcccCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHhhhccccccCCC
Q 021971 81 FTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRK 160 (304)
Q Consensus 81 ~~i~~~~~G~~w~il~~~~v~~nD~~AY~~G~~fGk~kL~~iSP~KTwEG~iGG~i~t~i~~~~~~~~~~~~~~~~cp~~ 160 (304)
+.+.|+++|..|+++|+.+||+||++||++||.||||||+++||||||||++||+++|++++.+++.++++++|++||.+
T Consensus 115 ~ii~ni~~G~~w~~l~~~lV~~nDi~AY~~G~~fGk~kL~~iSPkKTwEGfiGg~i~T~i~~~~~~~~~~~~~~~~cp~~ 194 (342)
T PLN02594 115 FTVANIFEGIFWFLLPASLIVINDIAAYLFGFFFGRTPLIKLSPKKTWEGFIGASVTTLISAFYLANIMGKFQWLTCPRK 194 (342)
T ss_pred HHHHHccccHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCccCCCCchhhhHHHHHHHHHHHHHHHHHhcccccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccCCCCCCCCCcCCCCCCC----CccccccchhHHHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCCCCCCCCC
Q 021971 161 DLATGWLHCDPGPLFKPESFPLPGWL----PWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPG 236 (304)
Q Consensus 161 ~~~~~~~~c~~~~~f~~~~~~~~~~~----~~~~~~~~~~~~~~l~l~~~~sl~a~~GDl~~S~iKR~~gIKD~G~~iPG 236 (304)
+++.++++||||++|++++|.+|.|. ++.++++.|.++|++++|+++|++||+||++||++||++||||||+++||
T Consensus 195 ~~~~~~~~C~p~~~f~~~~~~~p~~~~~~~~~~~i~~~~~~~h~l~l~l~aSl~a~fGdlfaS~~KR~~~IKDfG~~IPG 274 (342)
T PLN02594 195 DLSTGWLECDPDPLFKPETYPLPGWIPRWFPWKEVSVLPVQWHALSLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPG 274 (342)
T ss_pred ccccCcccCCCccccccccccCCccccccccccccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHccCCCcccCccCC
Confidence 99988999999999999999999652 33456677889999999999999999999999999999999999999999
Q ss_pred CcchhhhhhhhhHHHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcccCCC
Q 021971 237 HGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQERLFGQS 304 (304)
Q Consensus 237 HGGilDR~Dsll~~~~f~y~y~~~fi~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~ 304 (304)
|||++||+||+++|+|++|+|+++||+.+++|++++++++.++|++|||++|++.|+++|+++|++.+
T Consensus 275 HGGilDRfDs~l~~~~f~y~y~~~fi~~~~~~~~~il~~i~~~l~~~~q~~l~~~l~~~l~~~g~~~~ 342 (342)
T PLN02594 275 HGGITDRMDCQMVMAVFAYIYYQSFIVPQSVSVGKLLDQILTLLTDEEQKELYVKLGQMLQERGLGLG 342 (342)
T ss_pred CccccccccHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999998889999999999999999999998764
No 2
>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism]
Probab=100.00 E-value=2.9e-84 Score=625.05 Aligned_cols=293 Identities=56% Similarity=1.058 Sum_probs=281.0
Q ss_pred CeeeehHHHHHHHHHhhcchhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHH
Q 021971 1 MLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSS 80 (304)
Q Consensus 1 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~ly~~~~v~fvlsL~k~~~~~~~~~~~~t~~~ll~v~~~~~ 80 (304)
+||+|||.+.+++.....++..+ ..+++||+++||.+|++|+++||++|+|++|++||++++|||++++.|+.|++
T Consensus 134 ~yf~yg~~~~~yf~~v~~~~~~l----~~LV~yh~fi~f~lYi~gf~~FV~sL~k~~yk~QFg~fawtH~sll~Vv~qs~ 209 (432)
T KOG1440|consen 134 NYFVYGEILVAYFAAVFIRDRFL----FFLVRYHRFICFALYLIGFVSFVLSLRKGIYKLQFGLFAWTHMSLLLVVTQSH 209 (432)
T ss_pred HHHHhHHHHHHHHHHHHhhhHHH----HHHHHhcccccHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 48999999999999998877664 46667999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhhchhHhhhhcccCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHhhhccccccCCC
Q 021971 81 FTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRK 160 (304)
Q Consensus 81 ~~i~~~~~G~~w~il~~~~v~~nD~~AY~~G~~fGk~kL~~iSP~KTwEG~iGG~i~t~i~~~~~~~~~~~~~~~~cp~~ 160 (304)
+.++|+++|.+|+++|+.++++||++||++|..||||||+++||||||||||||.++|++.+.++++++.+++|++||.+
T Consensus 210 l~i~N~feG~fWFl~P~~lvicnDi~AY~~Gf~fGktPLiklSPKKTwEGFiGg~~~tvv~~i~~s~vL~~~~~~~cp~~ 289 (432)
T KOG1440|consen 210 LVIQNLFEGLFWFLVPAGLVICNDIFAYLFGFFFGKTPLIKLSPKKTWEGFIGGTFGTVVFGILFSYVLGHYTFFTCPVK 289 (432)
T ss_pred HHHhcccchHHHHHHHhHhheeCchHHHHHhhhhcCCcccccCCCCccchhhchhHHHHHHHHHHHHHhccCeEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-ccccCCCCCCCCCcCCCCCC----CCccccccchhHHHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCCCCCCCC
Q 021971 161 DLATG-WLHCDPGPLFKPESFPLPGW----LPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIP 235 (304)
Q Consensus 161 ~~~~~-~~~c~~~~~f~~~~~~~~~~----~~~~~~~~~~~~~~~l~l~~~~sl~a~~GDl~~S~iKR~~gIKD~G~~iP 235 (304)
+.+++ +++|||++.|.+++|.+|++ .++.++++.|.++|++.+|+++|++|||||++||++||++||||||+.||
T Consensus 290 d~~t~~~~~c~p~~~F~~~~y~lp~~i~~~i~~k~is~~p~~~Hsial~~faS~iaPFGGFfASgfKRafKiKDFG~~IP 369 (432)
T KOG1440|consen 290 DFSTTPLLSCEPKPLFEPQTYGLPGVISITIRLKSISLPPFQFHSIALGLFASFIAPFGGFFASGFKRAFKIKDFGDSIP 369 (432)
T ss_pred ccCCCCccccCcccccCcceecCCceeeeeccccccccchHHHHHHHHHHHHHhhccchhHHHHHhHHhhcCCcccccCC
Confidence 99876 79999999999999999986 35578899999999999999999999999999999999999999999999
Q ss_pred CCcchhhhhhhhhHHHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcc
Q 021971 236 GHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQERL 300 (304)
Q Consensus 236 GHGGilDR~Dsll~~~~f~y~y~~~fi~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~ 300 (304)
||||++||+|||++|+.|+|.|+++||+.+++| ++++.|++ |++|||++|+++|+++|++++
T Consensus 370 GHGGI~DR~DCQ~lma~Fay~Yi~SFI~~~~~s--~ll~qi~~-l~~~qq~~l~~~L~~~l~~~~ 431 (432)
T KOG1440|consen 370 GHGGITDRMDCQILMATFAYVYIQSFIRLPGVS--KLLDQILT-LTPEQQLNLFEKLQRRLSSKG 431 (432)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHhccCCHH--HHHHHHHh-CCHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999988877 99999998 999999999999999999875
No 3
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=100.00 E-value=9.6e-45 Score=341.93 Aligned_cols=131 Identities=34% Similarity=0.553 Sum_probs=115.6
Q ss_pred hhhHHHHHHHHHHHhhchhHhhhhcccCCcccc-ccCCCCCchHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCc
Q 021971 88 EGIFWFLLPASLIVINDIAAYIFGFFFGRTPLI-KLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGW 166 (304)
Q Consensus 88 ~G~~w~il~~~~v~~nD~~AY~~G~~fGk~kL~-~iSP~KTwEG~iGG~i~t~i~~~~~~~~~~~~~~~~cp~~~~~~~~ 166 (304)
+|..|+++.+.+||+||++||++||.|||||++ ++||||||||++||++++++.+.+.+.+.. .
T Consensus 149 ~G~~~vl~l~~~vw~sDt~AYf~Gr~fGk~KL~P~ISPkKTwEG~iGg~~~~~~~~~~~~~~~~-~-------------- 213 (285)
T PRK11624 149 SGAWWLLYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGGLATAAVISWLFGMWAP-L-------------- 213 (285)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCCCCchhhhHHHHHHHHHHHHHHHHHHc-c--------------
Confidence 488899999999999999999999999999999 899999999999999999998888765421 0
Q ss_pred cccCCCCCCCCCcCCCCCCCCccccccchhHHHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCCCCCCCCCCcchhhhhhh
Q 021971 167 LHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDC 246 (304)
Q Consensus 167 ~~c~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~sl~a~~GDl~~S~iKR~~gIKD~G~~iPGHGGilDR~Ds 246 (304)
+ . ..++.+++++++++.|++||++||++||++||||+|+++|||||++||+||
T Consensus 214 --------------------~-----~--~~~~~~~~~~~~~~~~~~GDL~ES~lKR~~gVKDSG~llPGHGGiLDR~DS 266 (285)
T PRK11624 214 --------------------D-----V--APVTLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDS 266 (285)
T ss_pred --------------------c-----c--cHHHHHHHHHHHHHHHHHhHHHHHHHhhccCCCCCcCcCCCcCcchhhHhH
Confidence 0 0 014567889999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHH
Q 021971 247 QMVMAVFAYIYHQS 260 (304)
Q Consensus 247 ll~~~~f~y~y~~~ 260 (304)
+++++|+.|+++..
T Consensus 267 Llfa~P~~~~~~~~ 280 (285)
T PRK11624 267 LTAAVPVFACLLLL 280 (285)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998776543
No 4
>PLN02953 phosphatidate cytidylyltransferase
Probab=100.00 E-value=1.3e-40 Score=322.37 Aligned_cols=134 Identities=34% Similarity=0.600 Sum_probs=120.4
Q ss_pred hhhHHHHHHHHHHHhhchhHhhhhcccCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCcc
Q 021971 88 EGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWL 167 (304)
Q Consensus 88 ~G~~w~il~~~~v~~nD~~AY~~G~~fGk~kL~~iSP~KTwEG~iGG~i~t~i~~~~~~~~~~~~~~~~cp~~~~~~~~~ 167 (304)
.|..|+++.+.++|+||++||++||.|||||+.++||||||||++||++++++++.+.+.++. |
T Consensus 266 ~Gl~~~l~~~~~vw~~Di~AY~~G~~fGk~kl~~ISPkKTwEG~iGGil~~vlv~~l~~~~l~---~------------- 329 (403)
T PLN02953 266 VGLVATLISFSGVIATDTFAFLGGKAFGRTPLTSISPKKTWEGTFVGLVGCIAITILLSKSLS---W------------- 329 (403)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCCeeeeehhHHHHHHHHHHHHHHHHc---c-------------
Confidence 488899999999999999999999999999999999999999999999999998888765431 1
Q ss_pred ccCCCCCCCCCcCCCCCCCCccccccchhHHHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCCCCCCCCCCcchhhhhhhh
Q 021971 168 HCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQ 247 (304)
Q Consensus 168 ~c~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~sl~a~~GDl~~S~iKR~~gIKD~G~~iPGHGGilDR~Dsl 247 (304)
+ ...++++++++++++.|++||++||++||++||||+|+++|||||++||+||+
T Consensus 330 -------------------~-------~~~~~~i~lg~li~~~~~~GDL~eS~iKR~~gVKDsG~liPGHGGiLDR~DSl 383 (403)
T PLN02953 330 -------------------P-------QSLFSSIAFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGHGGILDRVDSY 383 (403)
T ss_pred -------------------c-------hHHHHHHHHHHHHHHHHHhhHHHHHHHhHccCCCCccccCCCCCcchhhHhHH
Confidence 0 01256788999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcc
Q 021971 248 MVMAVFAYIYHQSFIV 263 (304)
Q Consensus 248 l~~~~f~y~y~~~fi~ 263 (304)
++++|++|+++++.+.
T Consensus 384 lfaaPv~y~~~~~~~~ 399 (403)
T PLN02953 384 IFTGALAYSFIKTSLK 399 (403)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999887764
No 5
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=100.00 E-value=1.1e-40 Score=310.76 Aligned_cols=132 Identities=38% Similarity=0.688 Sum_probs=116.2
Q ss_pred hhhhHHHHHHHHHHHhhchhHhhhhcccCCcccc-ccCCCCCchHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCC
Q 021971 87 FEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLI-KLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATG 165 (304)
Q Consensus 87 ~~G~~w~il~~~~v~~nD~~AY~~G~~fGk~kL~-~iSP~KTwEG~iGG~i~t~i~~~~~~~~~~~~~~~~cp~~~~~~~ 165 (304)
++|..|.+++..+||+||++||++||.|||||+. ++||||||||++||++++++++.......+.
T Consensus 130 ~~g~~~~l~l~~~vw~~Di~Ayf~Gr~fGk~kl~p~iSP~KT~eGfigG~~~~~~v~~~~~~~~~~-------------- 195 (265)
T COG0575 130 YSGLILLLLLFLGVWAGDIGAYFVGRRFGKHKLAPKISPKKTWEGFIGGALGAVLVAVLVIFLLSS-------------- 195 (265)
T ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHcCCCCCCCcCCCCCchHHhHHHHHHHHHHHHHHHHHHhh--------------
Confidence 5799999999999999999999999999999998 7999999999999999999888877654321
Q ss_pred ccccCCCCCCCCCcCCCCCCCCccccccchhHHHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCCCCCCCCCCcchhhhhh
Q 021971 166 WLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMD 245 (304)
Q Consensus 166 ~~~c~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~sl~a~~GDl~~S~iKR~~gIKD~G~~iPGHGGilDR~D 245 (304)
..+..++.+++++++++++++||++||++||++|+||+|+++|||||++||+|
T Consensus 196 ---------------------------~~~~~~~~~~l~~~~~l~~~lGDL~eS~iKR~~gvKDsg~liPGHGGilDR~D 248 (265)
T COG0575 196 ---------------------------LILNIWTLLILGLLLVLTSQLGDLFESYIKRLLGIKDSGWLIPGHGGILDRFD 248 (265)
T ss_pred ---------------------------hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCcCCCCCCcCcccccHh
Confidence 00224677889999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHh
Q 021971 246 CQMVMAVFAYIYHQSF 261 (304)
Q Consensus 246 sll~~~~f~y~y~~~f 261 (304)
|++++ ++|++...+
T Consensus 249 sl~~~--~~~~~~~~~ 262 (265)
T COG0575 249 SLLFV--AVYLFLLLF 262 (265)
T ss_pred hHHHH--HHHHHHHHH
Confidence 99998 666665443
No 6
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=100.00 E-value=8.5e-39 Score=290.08 Aligned_cols=159 Identities=35% Similarity=0.506 Sum_probs=129.8
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHhhhhhhHHHHHHHHHHHhhchhHhhhhcccCCccccccCCCCCchHHHHHHHHHHH
Q 021971 62 FSQYAWTHMILIVVFAQS-SFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATIT 140 (304)
Q Consensus 62 ~~~~~~t~~~ll~v~~~~-~~~i~~~~~G~~w~il~~~~v~~nD~~AY~~G~~fGk~kL~~iSP~KTwEG~iGG~i~t~i 140 (304)
..+...+.+.+.++.... .....+...+..+.+.++.+++.+|++||++||.||||+..++||||||||++||++++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~gD~~A~l~G~~fGk~~~~~~sp~KT~EGsi~~~i~~~i 179 (259)
T PF01148_consen 100 IRRIISTLFGLIYFGIFLLLLLIFFWFFGPPLALIGILILGIGDSFAYLVGRRFGKHLAPKISPKKTWEGSIAGFISSFI 179 (259)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCHHHHhHHHHHHHH
Confidence 344444454444333322 3344455678888899999999999999999999999943489999999999999999999
Q ss_pred HHHHHHHHhhhccccccCCCCCCCCccccCCCCCCCCCcCCCCCCCCccccccchhHHHHHHHHHHHHHhhhhhhHHHHH
Q 021971 141 SAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASG 220 (304)
Q Consensus 141 ~~~~~~~~~~~~~~~~cp~~~~~~~~~~c~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~sl~a~~GDl~~S~ 220 (304)
.+.+........ . ...++.+++++++++++++||++||.
T Consensus 180 ~~~~~~~~~~~~-------------------------------------~----~~~~~~~~~~~~~~i~~~~gdl~~S~ 218 (259)
T PF01148_consen 180 ISFLLLYYLSSF-------------------------------------F----LSWWQAILISLLASIVEAFGDLFESA 218 (259)
T ss_pred HHHHHHHHhcch-------------------------------------h----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877554210 0 12467889999999999999999999
Q ss_pred hhhcCCCCCCCCCCCCCcchhhhhhhhhHHHHHHHHHHHHh
Q 021971 221 FKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSF 261 (304)
Q Consensus 221 iKR~~gIKD~G~~iPGHGGilDR~Dsll~~~~f~y~y~~~f 261 (304)
+||++||||+|+++|||||++||+||+++++|+.|++++.|
T Consensus 219 ~KR~~~iKD~g~lipghGg~lDr~d~~l~~~~~~~~~~~~f 259 (259)
T PF01148_consen 219 IKRDAGIKDSGNLIPGHGGILDRFDSLLFAAPVFYILLKIF 259 (259)
T ss_pred HHHhhhcccccccccCcCCcccchHhHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999998875
No 7
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=100.00 E-value=2.5e-37 Score=283.27 Aligned_cols=183 Identities=28% Similarity=0.505 Sum_probs=137.1
Q ss_pred hhHHHHHH-HHHHHHHHHHHHHhcccccc--chHHHHHHHHHHHHHHHHHHHH---HHh---hhhhhHHHHHHHHHHHhh
Q 021971 33 YHMVICYF-LYISGFVWFILTLKKKMYKY--QFSQYAWTHMILIVVFAQSSFT---VAS---IFEGIFWFLLPASLIVIN 103 (304)
Q Consensus 33 ~h~~i~~~-ly~~~~v~fvlsL~k~~~~~--~~~~~~~t~~~ll~v~~~~~~~---i~~---~~~G~~w~il~~~~v~~n 103 (304)
|.+++.|. .|.+.++.-...|+.....+ ..+...|..|.-. ..-||.. ..+ ...|...+++.+.++..|
T Consensus 109 y~mf~ifipvY~fL~Lp~l~~L~gdt~gFl~~~s~i~wg~mltv--fcish~~~lltL~~~~~~~~~ll~iflli~~q~n 186 (303)
T COG4589 109 YEMFIIFIPVYGFLILPILMVLVGDTSGFLHRVSAIQWGWMLTV--FCISHAAYLLTLDITNFQGGALLVIFLLILTELN 186 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHhHHHHHHHHHHH--HHHHhhHHHhhCCCCCcCccchHHHHHHHHHHHH
Confidence 34555554 56555555445554322211 2233445544332 2233332 112 223445667778889999
Q ss_pred chhHhhhhcccCCcccc-ccCCCCCchHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCCCCCCCcCCC
Q 021971 104 DIAAYIFGFFFGRTPLI-KLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPL 182 (304)
Q Consensus 104 D~~AY~~G~~fGk~kL~-~iSP~KTwEG~iGG~i~t~i~~~~~~~~~~~~~~~~cp~~~~~~~~~~c~~~~~f~~~~~~~ 182 (304)
|+++|.+||.|||||+. ++||||||||++||++.+++.+.++.++ +
T Consensus 187 DV~QYvwGk~fGk~Ki~P~vSPnKTveGl~GGilt~~~~~~~l~~l-T-------------------------------- 233 (303)
T COG4589 187 DVAQYVWGKSFGKRKIVPKVSPNKTVEGLIGGILTTMIASAILGLL-T-------------------------------- 233 (303)
T ss_pred HHHHHHHhhhcCCcccCCCcCCcchHHHHhhhHHHHHHHHHHHHHh-C--------------------------------
Confidence 99999999999999998 8999999999999999999999888732 1
Q ss_pred CCCCCccccccchhHHHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCCCCCCCCCCcchhhhhhhhhHHHHHHHHHHHHh
Q 021971 183 PGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSF 261 (304)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~l~~~~sl~a~~GDl~~S~iKR~~gIKD~G~~iPGHGGilDR~Dsll~~~~f~y~y~~~f 261 (304)
|+ ..+|+++.|+..++.|.+||++.|++||+.|+||+|+.+|||||++||+||+++++|..+.+.+++
T Consensus 234 ----p~-------~~lqa~~~~~~I~l~GF~GdlvmSaiKRd~gvKD~G~li~GHGGiLDR~DSL~FtAPiffh~~ry~ 301 (303)
T COG4589 234 ----PL-------NTLQALLAGLLIGLSGFCGDLVMSAIKRDVGVKDSGKLLPGHGGILDRVDSLIFTAPIFFHFIRYC 301 (303)
T ss_pred ----CC-------cHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccCCCCccHHHHHHHHHHhhhHHHHHHHHh
Confidence 11 126889999999999999999999999999999999999999999999999999999988877765
No 8
>PRK04032 hypothetical protein; Provisional
Probab=99.94 E-value=4.9e-27 Score=204.35 Aligned_cols=102 Identities=25% Similarity=0.406 Sum_probs=86.9
Q ss_pred hhccc-CCccccccCCCCCchHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCCCCCCCcCCCCCCCCc
Q 021971 110 FGFFF-GRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPW 188 (304)
Q Consensus 110 ~G~~f-Gk~kL~~iSP~KTwEG~iGG~i~t~i~~~~~~~~~~~~~~~~cp~~~~~~~~~~c~~~~~f~~~~~~~~~~~~~ 188 (304)
+||.| ++||+ +||||||||++||++++++.+.+++++.... +
T Consensus 22 ~g~~~~dg~~i--iSP~KTwEG~iGGv~~~~l~~~~~~~~~~~~----------------------------------~- 64 (159)
T PRK04032 22 FGKTFVDGRRI--LGDGKTWRGLIGGILFGTLVGLIQNLLVPAY----------------------------------I- 64 (159)
T ss_pred CCCcCCCCCee--CCCCCcHHHhHHHHHHHHHHHHHHHHHHccc----------------------------------h-
Confidence 47788 67788 9999999999999999999988887543100 0
Q ss_pred cccccchhHHHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCCCCCCCCCCcchhhhhhhhhHHHHHHHHHHH
Q 021971 189 KEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQ 259 (304)
Q Consensus 189 ~~~~~~~~~~~~l~l~~~~sl~a~~GDl~~S~iKR~~gIKD~G~~iPGHGGilDR~Dsll~~~~f~y~y~~ 259 (304)
...++++++|+++++.|++||++||++||++|+|| |+.+| ++||+||+++++|++|++..
T Consensus 65 ------~~~~~~~~~g~li~v~~~~GDL~eS~iKR~~gVKD-g~~iP----iLDRiDsll~a~p~~~l~~~ 124 (159)
T PRK04032 65 ------GALGVAIILAFLLSFGALLGDMLGSFIKRRLGLER-GAPAP----LLDQLDFVVGALLFAYLVAP 124 (159)
T ss_pred ------hHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCC-cCccc----chhhhHHHHHHHHHHHHHHh
Confidence 01246788999999999999999999999999999 99998 99999999999999998876
No 9
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=99.67 E-value=4.2e-16 Score=138.14 Aligned_cols=125 Identities=27% Similarity=0.451 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHHHhhchhHhhhhcc---cCC-----ccccccCCCCCchHHHHHHHHHHHHHHHHHHHhhhccccccCCC
Q 021971 89 GIFWFLLPASLIVINDIAAYIFGFF---FGR-----TPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRK 160 (304)
Q Consensus 89 G~~w~il~~~~v~~nD~~AY~~G~~---fGk-----~kL~~iSP~KTwEG~iGG~i~t~i~~~~~~~~~~~~~~~~cp~~ 160 (304)
...|+++|+. .+|-+..-+.|.. +|| ||+ +.++|||||+++|.+++++++.+...+.. . +
T Consensus 7 ~~~~~~lPay--~an~~a~l~gg~~PiD~G~~~~DGrRi--lGdgKTwrG~i~gvl~g~l~g~i~~~l~~-~-------~ 74 (175)
T PF01864_consen 7 YALWLMLPAY--VANGSAVLFGGGRPIDFGKTFRDGRRI--LGDGKTWRGFIGGVLAGTLVGIIQGLLLP-L-------S 74 (175)
T ss_pred HHHHHHhHHH--hcCchHHHhCCCCcccCCCccCCCCEe--cCCCCeEEeeeHHHHHHHHHHHHHHHHhh-h-------c
Confidence 3579999988 6777776655432 333 344 89999999999999999999988765421 0 0
Q ss_pred CCCCCccccCCCCCCCCCcCCCCCCCCccccccchhHHHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCCCCCCCCCCcch
Q 021971 161 DLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGI 240 (304)
Q Consensus 161 ~~~~~~~~c~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~sl~a~~GDl~~S~iKR~~gIKD~G~~iPGHGGi 240 (304)
.. . + .......+.+..++..++.|+.||+..|++||++|++. |...| +
T Consensus 75 ~~----------------~--~---------~~~~~~~~~~~~g~ll~~gamlGDl~~SFIKRRlgi~~-G~~ap----~ 122 (175)
T PF01864_consen 75 IF----------------A--L---------YFYGSLFFNLLLGFLLGLGAMLGDLPGSFIKRRLGIPR-GAPAP----G 122 (175)
T ss_pred cc----------------c--c---------ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCCC-CCcCc----c
Confidence 00 0 0 00011235577899999999999999999999999997 77788 9
Q ss_pred hhhhhhhhHHHHHHHHH
Q 021971 241 TDRMDCQMVMAVFAYIY 257 (304)
Q Consensus 241 lDR~Dsll~~~~f~y~y 257 (304)
+|++|+.+.+..+.+.+
T Consensus 123 lDQldf~lgall~~~~~ 139 (175)
T PF01864_consen 123 LDQLDFVLGALLLLYLF 139 (175)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 99999999988888764
No 10
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=97.58 E-value=0.00031 Score=64.98 Aligned_cols=50 Identities=28% Similarity=0.257 Sum_probs=43.2
Q ss_pred HHHhhchhHhhhhcccCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHhh
Q 021971 99 LIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMG 150 (304)
Q Consensus 99 ~v~~nD~~AY~~G~~fGk~kL~~iSP~KTwEG~iGG~i~t~i~~~~~~~~~~ 150 (304)
+.|+ |+.|-..||+||+++. ++.|||+|.|.||.+.++++.+++..+++.
T Consensus 165 lswc-Dt~AdtvGRKfG~~tp-k~aknKSlAGSIgaft~Gvf~c~vy~gyf~ 214 (269)
T KOG4453|consen 165 LSWC-DTIADTVGRKFGSTTP-KYAKNKSLAGSIGAFTFGVFICIVYLGYFS 214 (269)
T ss_pred HHHh-hhHHHHHhhhccccCC-CcCCCccccchHHHHHHHHHHHHHHHHHHh
Confidence 3455 9999999999999876 589999999999999999998888776653
No 11
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=97.17 E-value=0.002 Score=59.09 Aligned_cols=48 Identities=27% Similarity=0.316 Sum_probs=39.9
Q ss_pred HHHHhhchhHhhhhcccCCccccccCCCCCchHHHHHHHHHHHHHHHHH
Q 021971 98 SLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLA 146 (304)
Q Consensus 98 ~~v~~nD~~AY~~G~~fGk~kL~~iSP~KTwEG~iGG~i~t~i~~~~~~ 146 (304)
.+....|..|-++|+.+||||. +.+++||+||.+++++++.+...++.
T Consensus 121 ~~l~~GD~lAsiiG~~~G~~~~-~~~~~KSleGSla~fi~~~l~~~~~~ 168 (216)
T COG0170 121 LVLALGDGLASIIGKRYGRHKR-ILGNGKSLEGSLAFFIASFLVLLVLY 168 (216)
T ss_pred HHHHHhhHHHHHhCcccCcccc-ccCCCCchhhhHHHHHHHHHHHHHHH
Confidence 3345789999999999999833 48999999999999999988776543
No 12
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=94.24 E-value=0.039 Score=55.85 Aligned_cols=43 Identities=33% Similarity=0.399 Sum_probs=37.0
Q ss_pred hhchhHhhhhcccCCccccccCCCCCchHHHHHHHHHHHHHHHHH
Q 021971 102 INDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLA 146 (304)
Q Consensus 102 ~nD~~AY~~G~~fGk~kL~~iSP~KTwEG~iGG~i~t~i~~~~~~ 146 (304)
.-|+.|-++|+++||+|-.+- |||.||.+.++++..++.+++-
T Consensus 421 iGDTmASiiG~r~G~~RW~~T--kKTlEGT~Afivs~~iv~~ll~ 463 (510)
T KOG2468|consen 421 IGDTMASIIGKRYGRIRWSGT--KKTLEGTLAFIVSSFIVCLLLL 463 (510)
T ss_pred cchHHHHHHhhhhcceecCCC--cceeehhhHHHHHHHHHHHHHH
Confidence 579999999999999998754 9999999999998887666543
No 13
>COG1836 Predicted membrane protein [Function unknown]
Probab=53.65 E-value=2e+02 Score=27.28 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=35.4
Q ss_pred HHHhhchhHhhhhcccCCccc-c----ccCC----CCCchHHHHHHHHHHHHHHHH
Q 021971 99 LIVINDIAAYIFGFFFGRTPL-I----KLSP----KKTWEGFIGASVATITSAFVL 145 (304)
Q Consensus 99 ~v~~nD~~AY~~G~~fGk~kL-~----~iSP----~KTwEG~iGG~i~t~i~~~~~ 145 (304)
-+...|++|-=.|+..||||. + |+.| .-|++|-+.|++++.+.+.+-
T Consensus 129 Ata~aDT~ASEiG~~~~~~p~lITtfkrV~~Gt~GaVS~~GelAav~Ga~iIal~~ 184 (247)
T COG1836 129 ATANADTLASEIGKAYGKRPRLITTFKRVEPGTSGAVSLVGELAAVAGAFIIALLS 184 (247)
T ss_pred HHHhhhHHHHHHhHhhCCCeEEEEeeeEcCCCCCCccchhhhHHHHHHHHHHHHHH
Confidence 345789999999999998764 2 3444 458999999988888776553
No 14
>PF11283 DUF3084: Protein of unknown function (DUF3084); InterPro: IPR021435 This bacterial family of proteins has no known function.
Probab=49.74 E-value=14 Score=29.12 Aligned_cols=27 Identities=30% Similarity=0.566 Sum_probs=19.7
Q ss_pred HhhchhHhh---hhcccCCcccc--ccCCCCC
Q 021971 101 VINDIAAYI---FGFFFGRTPLI--KLSPKKT 127 (304)
Q Consensus 101 ~~nD~~AY~---~G~~fGk~kL~--~iSP~KT 127 (304)
...-.-||+ .|+..||+++. .+-|+.|
T Consensus 11 ~lgG~IA~~GD~iG~kvGKkrlslFgLRPr~T 42 (79)
T PF11283_consen 11 LLGGLIAYLGDRIGSKVGKKRLSLFGLRPRYT 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhcCCCccc
Confidence 344444554 47889999885 8999998
No 15
>PF01741 MscL: Large-conductance mechanosensitive channel, MscL; InterPro: IPR001185 Mechanosensitive ion channels (MscL) play a critical role in transducing physical stresses at the cell membrane into an electrochemical response. MscL is a protein which forms a channel organised as a homopentamer, with each subunit containing two transmembrane regions []. Prokaryotes harbor a large-conductance mechanosensitive channel (gene mscL) that opens in response to stretch forces in the membrane lipid bilayer and may participate in the regulation of osmotic pressure changes within the cell [].; GO: 0005216 ion channel activity, 0006810 transport, 0016021 integral to membrane; PDB: 3HZQ_A 2OAR_A.
Probab=49.10 E-value=66 Score=27.36 Aligned_cols=82 Identities=13% Similarity=0.215 Sum_probs=39.3
Q ss_pred hhhhhHHHHHhhhcCCCCCCCC---CCCCCcc--------hhhhhhhhhHHHHHHHHHHHHhcc---CCCCCHHHHHHHH
Q 021971 211 APFGGFFASGFKRAFKIKDFGD---SIPGHGG--------ITDRMDCQMVMAVFAYIYHQSFIV---PQSFRVEMILEQI 276 (304)
Q Consensus 211 a~~GDl~~S~iKR~~gIKD~G~---~iPGHGG--------ilDR~Dsll~~~~f~y~y~~~fi~---~~~~~~~~~~~~~ 276 (304)
|...|++...+--..|-.|+++ .++|++| +++.+=..+.++.+.|+..+.+=+ +.... +. .
T Consensus 33 slV~dii~Pli~~~~g~~~~~~~~~~~~g~~~~~~i~yG~Fl~a~I~FlIiA~vvFlivk~~nk~~~~~~~~-~~----~ 107 (128)
T PF01741_consen 33 SLVNDIIMPLIGLLFGGPDFSDLFIVLSGPAGAVVIPYGAFLNALINFLIIAFVVFLIVKPINKLKKKEEKE-EA----E 107 (128)
T ss_dssp HHHHHCHHHHHHHSCS-S--EE----TTS-SS-EEE-HCHHHHHHHHHHHHHHHHHHCHHHHHHCHHTT-S---------
T ss_pred HHHHHHHHHHHHHhcCCCCcccceeeeeccCCcceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cc----C
Confidence 3445666666655566556554 4456544 444444444444444554433322 21111 10 0
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhc
Q 021971 277 LTALTYEEQKALYMKLGEILQER 299 (304)
Q Consensus 277 ~~~l~~~~~~~l~~~l~~~~~~~ 299 (304)
.=.++++.++++++++.|.+|
T Consensus 108 --~~~~~~~~~ll~eIrdlL~~q 128 (128)
T PF01741_consen 108 --APAPKTCEELLTEIRDLLKKQ 128 (128)
T ss_dssp --H--HHHHHHHHHHHHHHHHH-
T ss_pred --CCCCCchHHHHHHHHHHHhcC
Confidence 112458899999999999875
No 16
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=49.01 E-value=2.3e+02 Score=26.43 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=38.3
Q ss_pred HHHHHHHhhchhHhhhhcccCCcccc-----ccCC----CCCchHHHHHHHHHHHHHHHHHH
Q 021971 95 LPASLIVINDIAAYIFGFFFGRTPLI-----KLSP----KKTWEGFIGASVATITSAFVLAN 147 (304)
Q Consensus 95 l~~~~v~~nD~~AY~~G~~fGk~kL~-----~iSP----~KTwEG~iGG~i~t~i~~~~~~~ 147 (304)
+-.+.....||+|-=.|...+++|.. ++.| .=|++|.+.|+.++.+++.....
T Consensus 111 ~~s~A~a~aDTwASEiG~ls~~~P~lItt~k~V~~Gt~GgVS~lGt~as~~Ga~~Ia~~~~~ 172 (226)
T PF01940_consen 111 LGSIAAANADTWASEIGVLSKGPPRLITTFKRVPPGTSGGVSLLGTLASLAGALLIALVAFL 172 (226)
T ss_pred HHHHHHHhhhHHHHhhhhhcCCCCeEeeCCcCCCCCCCCeechHHHHHHHHHHHHHHHHHHH
Confidence 34444567899999999988876642 2333 35899999999998887776543
No 17
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=43.24 E-value=65 Score=30.19 Aligned_cols=56 Identities=18% Similarity=0.108 Sum_probs=37.8
Q ss_pred HHHHHHHHhhhhhhHHHHHhhhcCCCCC-CCCCCCCC---cchhhhhhhhhHHHHHHHHH
Q 021971 202 CLGLFASIIAPFGGFFASGFKRAFKIKD-FGDSIPGH---GGITDRMDCQMVMAVFAYIY 257 (304)
Q Consensus 202 ~l~~~~sl~a~~GDl~~S~iKR~~gIKD-~G~~iPGH---GGilDR~Dsll~~~~f~y~y 257 (304)
...++..++.-.+|.+++.+||++|.+. .+++=|+. |=+..-+.+.+.+..+...+
T Consensus 134 ~~~l~l~~~vw~~Di~Ayf~Gr~fGk~kl~p~iSP~KT~eGfigG~~~~~~v~~~~~~~~ 193 (265)
T COG0575 134 ILLLLLFLGVWAGDIGAYFVGRRFGKHKLAPKISPKKTWEGFIGGALGAVLVAVLVIFLL 193 (265)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHcCCCCCCCcCCCCCchHHhHHHHHHHHHHHHHHHHHH
Confidence 3466677788899999999999999875 67788866 33333444444444443333
No 18
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=42.99 E-value=79 Score=26.23 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=17.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 021971 273 LEQILTALTYEEQKALYMKLG 293 (304)
Q Consensus 273 ~~~~~~~l~~~~~~~l~~~l~ 293 (304)
+++-...|||||+.+|.+.+.
T Consensus 83 lqkRle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 83 LQKRLEELSPEELEALQAEIE 103 (104)
T ss_pred HHHHHHhCCHHHHHHHHHHhc
Confidence 666667899999999988764
No 19
>PRK10666 ammonium transporter; Provisional
Probab=39.18 E-value=19 Score=36.59 Aligned_cols=38 Identities=29% Similarity=0.396 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCCCCCCCCCCc
Q 021971 198 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG 238 (304)
Q Consensus 198 ~~~l~l~~~~sl~a~~GDl~~S~iKR~~gIKD~G~~iPGHG 238 (304)
|.++++|++++++..++- ..+||.++|-|--+.+|-||
T Consensus 304 ~~A~iiG~vag~v~~~~~---~~l~~~~~iDD~~~a~~vHg 341 (428)
T PRK10666 304 GGALIIGVVAGLAGLWGV---TMLKRWLRVDDPCDVFGVHG 341 (428)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHhcCCCCCCcCccHhhh
Confidence 678899999999887664 34788899999999999994
No 20
>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism]
Probab=38.49 E-value=19 Score=36.54 Aligned_cols=43 Identities=19% Similarity=-0.009 Sum_probs=35.6
Q ss_pred HHHHHHHHhhchhHhhhhcccCCccccccCCCCCchHHHHHHH
Q 021971 94 LLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASV 136 (304)
Q Consensus 94 il~~~~v~~nD~~AY~~G~~fGk~kL~~iSP~KTwEG~iGG~i 136 (304)
.+.+..|.++|.++.-.++-+++++....+|+|+||+..-++.
T Consensus 271 ~i~~s~vL~~~~~~~cp~~d~~t~~~~~c~p~~~F~~~~y~lp 313 (432)
T KOG1440|consen 271 GILFSYVLGHYTFFTCPVKDFSTTPLLSCEPKPLFEPQTYGLP 313 (432)
T ss_pred HHHHHHHhccCeEEEecccccCCCCccccCcccccCcceecCC
Confidence 3455667889999999999999999779999999999876643
No 21
>TIGR00297 conserved hypothetical protein TIGR00297.
Probab=38.42 E-value=2.4e+02 Score=26.50 Aligned_cols=48 Identities=21% Similarity=0.392 Sum_probs=35.3
Q ss_pred HHHHHhhchhHhhhhcccCCccc-c----ccCC----CCCchHHHHHHHHHHHHHHH
Q 021971 97 ASLIVINDIAAYIFGFFFGRTPL-I----KLSP----KKTWEGFIGASVATITSAFV 144 (304)
Q Consensus 97 ~~~v~~nD~~AY~~G~~fGk~kL-~----~iSP----~KTwEG~iGG~i~t~i~~~~ 144 (304)
.+.....||+|-=.|+..+|+|. + ++.| .=|+||.+.+++++.+++..
T Consensus 118 s~A~a~aDT~ASEiG~ls~~~p~lItt~k~V~~GT~GgVS~~Gt~As~~Ga~~I~~~ 174 (237)
T TIGR00297 118 SVATALSDTMASEIGKAYGKNPRLITTLQRVEPGTDGAISVEGTLAGFAGALAIALL 174 (237)
T ss_pred HHHHHHcchHHHhhhhccCCCCeEeecCccCCCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 34455789999999999998653 2 2333 45889999999988887743
No 22
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=35.43 E-value=14 Score=37.21 Aligned_cols=38 Identities=34% Similarity=0.587 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCCCCCCCCCCc
Q 021971 198 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG 238 (304)
Q Consensus 198 ~~~l~l~~~~sl~a~~GDl~~S~iKR~~gIKD~G~~iPGHG 238 (304)
|.++++|++++++..+|- ..+||+++|-|--+.+|-||
T Consensus 280 ~~A~viG~iag~~~~~~~---~~l~~~~~iDD~~~~~~vHg 317 (403)
T TIGR00836 280 WGAIIIGLVAGVLCYLAV---SKLKKKLKIDDPLDAFAVHG 317 (403)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHcCCCCCcccchhhh
Confidence 678889999988887665 34788899999988999883
No 23
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=32.71 E-value=22 Score=35.86 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCCCCCCCCCCc
Q 021971 198 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG 238 (304)
Q Consensus 198 ~~~l~l~~~~sl~a~~GDl~~S~iKR~~gIKD~G~~iPGHG 238 (304)
|.++++|++++++..++-- ++|+++|-|--+.+|-||
T Consensus 294 ~~A~iiG~iag~v~~~~~~----~~~~~~iDD~~~~~~vHg 330 (404)
T TIGR03644 294 LAATLIGAVGGVIVVFSIV----LLDKLKIDDPVGAISVHG 330 (404)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhCCCCCCcCchHhhh
Confidence 6789999999999987654 356699999999999994
No 24
>cd02572 PseudoU_synth_hDyskerin PseudoU_synth_hDyskerin_Like: Pseudouridine synthase, human dyskerin like. This group consists of eukaryotic and archeal pseudouridine synthases similar to human dyskerin, Saccharomyces cerevisiae Cbf5, and Drosophila melanogaster Mfl (minifly protein). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactor is required. S. cerevisiae Cbf5 and human dyskerin are nucleolar proteins that, with the help of guide RNAs, make the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Cbf5/Dyskerin is the catalytic subunit of eukaryotic box H/ACA small nucleolar ribonucleoprotein (snoRNP) particles. D. melanogaster mfl hosts in its fourth intron, a box H/AC snoRNA gene. In addition dyskerin is likely to have a structural role in the telomerase complex. Mutations in human dyskerin cause X-linked dyskeratosis congenitas. Mutations in Drosophila Mfl r
Probab=32.64 E-value=26 Score=31.38 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=21.7
Q ss_pred HHhhhcCCCCCCCCCCCCCcchhhhhhhhhH
Q 021971 219 SGFKRAFKIKDFGDSIPGHGGITDRMDCQMV 249 (304)
Q Consensus 219 S~iKR~~gIKD~G~~iPGHGGilDR~Dsll~ 249 (304)
+.+||.+|.|. -||+|-||.+-+=++
T Consensus 20 ~~~k~~~~~kk-----vGH~GTLDp~A~GvL 45 (182)
T cd02572 20 AWIKRILGVEK-----TGHSGTLDPKVTGCL 45 (182)
T ss_pred HHHHHHhCCCc-----cCcCCCCCCcCeeEE
Confidence 78899999987 499999999975443
No 25
>PRK02868 hypothetical protein; Provisional
Probab=32.24 E-value=89 Score=29.59 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=15.1
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 021971 273 LEQILTALTYEEQKALYMK 291 (304)
Q Consensus 273 ~~~~~~~l~~~~~~~l~~~ 291 (304)
++.+.+|||+|||..+++.
T Consensus 60 l~~~v~~ms~eqq~~ll~~ 78 (245)
T PRK02868 60 LFELVQNMSPEQQQILLKA 78 (245)
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 4456678999999999874
No 26
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=31.03 E-value=65 Score=32.72 Aligned_cols=38 Identities=34% Similarity=0.551 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCCCCCCCCCCc
Q 021971 198 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG 238 (304)
Q Consensus 198 ~~~l~l~~~~sl~a~~GDl~~S~iKR~~gIKD~G~~iPGHG 238 (304)
+-++++|++++++..+ ..+.+||..|+-|.=+.+|.||
T Consensus 281 ~~A~iiGii~g~i~~~---a~~~lk~~l~~DD~ld~f~vHG 318 (409)
T COG0004 281 WGALIIGLIAGVICYF---AVKLLKKKLGVDDALDVFGVHG 318 (409)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhcCCCCcccceeccc
Confidence 4567788887777654 4678999999999999999993
No 27
>PRK10236 hypothetical protein; Provisional
Probab=29.25 E-value=66 Score=30.35 Aligned_cols=28 Identities=11% Similarity=0.211 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 021971 269 VEMILEQILTALTYEEQKALYMKLGEIL 296 (304)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~ 296 (304)
+.++++...++||+|||.+|.+.++..+
T Consensus 118 l~kll~~a~~kms~eE~~~L~~~l~~~l 145 (237)
T PRK10236 118 LEQFLRNTWKKMDEEHKQEFLHAVDARV 145 (237)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHhhhc
Confidence 4567777888999999999999998765
No 28
>PF09720 Unstab_antitox: Putative addiction module component; InterPro: IPR013406 This entry defines several short bacterial proteins, typically about 75 amino acids long, which are always found as part of a pair (at least) of small genes. The other protein in the pair always belongs to a family of plasmid stabilisation proteins (IPR007712 from INTERPRO). It is likely that this protein and its partner comprise some form of addiction module - a pair of genes consisting of a stable toxin and an unstable antitoxin which mediate programmed cell death [] - although these gene pairs are usually found on the bacterial main chromosome.
Probab=27.79 E-value=61 Score=22.86 Aligned_cols=20 Identities=30% Similarity=0.311 Sum_probs=17.6
Q ss_pred cCCHHHHHHHHHHHHHHHhh
Q 021971 279 ALTYEEQKALYMKLGEILQE 298 (304)
Q Consensus 279 ~l~~~~~~~l~~~l~~~~~~ 298 (304)
+||++||.+|.+.|=+.|..
T Consensus 1 ~L~~~er~~L~e~L~~sl~~ 20 (54)
T PF09720_consen 1 QLPPEERAELAEELWDSLDD 20 (54)
T ss_pred CcCHHHHHHHHHHHHHHhcc
Confidence 48999999999999888875
No 29
>PF04868 PDE6_gamma: Retinal cGMP phosphodiesterase, gamma subunit; InterPro: IPR006952 Retinal rod and cone cGMP phosphodiesterases function as the effector enzymes in the vertebrate visual transduction cascade. This family represents the inhibitory gamma subunit [], which is also expressed outside retinal tissues and has been shown to interact with the G-protein-coupled receptor kinase 2 signalling system to regulate the epidermal growth factor- and thrombin-dependent stimulation of p42/p44 mitogen-activated protein kinase in human embryonic kidney 293 cells [].; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0030553 cGMP binding, 0007601 visual perception; PDB: 2JU4_A 1FQJ_C 3JWR_D.
Probab=26.88 E-value=39 Score=26.61 Aligned_cols=19 Identities=42% Similarity=0.788 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCCCcchhhh
Q 021971 225 FKIKDFGDSIPGHGGITDR 243 (304)
Q Consensus 225 ~gIKD~G~~iPGHGGilDR 243 (304)
-|+|-||+-|||+-|+-+-
T Consensus 41 kGvkGf~~~ipgmeglg~d 59 (83)
T PF04868_consen 41 KGVKGFGDDIPGMEGLGTD 59 (83)
T ss_dssp SSSS--TTSSSSSTT-SHH
T ss_pred CcccCccCcCcccccccCc
Confidence 3789999999999888543
No 30
>PRK00989 truB tRNA pseudouridine synthase B; Provisional
Probab=26.46 E-value=39 Score=31.66 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=22.1
Q ss_pred HHHhhhcCCCCCCCCCCCCCcchhhhhhhhhH
Q 021971 218 ASGFKRAFKIKDFGDSIPGHGGITDRMDCQMV 249 (304)
Q Consensus 218 ~S~iKR~~gIKD~G~~iPGHGGilDR~Dsll~ 249 (304)
-+.+||.+|.|. -||+|-||.+-+=++
T Consensus 26 v~~ikk~~~~kK-----vGH~GTLDP~AtGvL 52 (230)
T PRK00989 26 IRSLTKLIGVKK-----IGHAGTLDPFATGVM 52 (230)
T ss_pred HHHHHHHhCCCc-----CCcCccCCCCCeeEE
Confidence 467899999997 499999999975443
No 31
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=26.29 E-value=68 Score=23.60 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=18.2
Q ss_pred cCCHHHHHHHHHHHHHHHhh
Q 021971 279 ALTYEEQKALYMKLGEILQE 298 (304)
Q Consensus 279 ~l~~~~~~~l~~~l~~~~~~ 298 (304)
+||++||++|++.|-+.|.+
T Consensus 2 ~L~~~ERl~Lve~LwdSL~~ 21 (63)
T TIGR02574 2 ALSPDERIQLVEDIWDSIAA 21 (63)
T ss_pred CCCHHHHHHHHHHHHHHhcc
Confidence 59999999999999999974
No 32
>PF01509 TruB_N: TruB family pseudouridylate synthase (N terminal domain); InterPro: IPR002501 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. This entry represents pseudouridine synthase TruB, as well as Cbf5p that modifies rRNA [].; GO: 0006396 RNA processing; PDB: 1SGV_B 2AUS_C 3UAI_A 3U28_A 2RFK_A 3LWV_A 3HJY_A 3HAX_A 3LWO_A 3HAY_A ....
Probab=25.66 E-value=23 Score=30.73 Aligned_cols=22 Identities=36% Similarity=0.682 Sum_probs=16.3
Q ss_pred hhcCCCCCCCCCCCCCcchhhhhhhhh
Q 021971 222 KRAFKIKDFGDSIPGHGGITDRMDCQM 248 (304)
Q Consensus 222 KR~~gIKD~G~~iPGHGGilDR~Dsll 248 (304)
||.+++|.- ||+|-||-+-+=+
T Consensus 1 r~~~~~~Kv-----GH~GTLDP~AsGv 22 (149)
T PF01509_consen 1 RRILGIKKV-----GHGGTLDPFASGV 22 (149)
T ss_dssp HHHTTBSSE-----EESS-SSTT-EEE
T ss_pred CcccCccee-----ccccccCCcceEE
Confidence 788888875 9999999987533
No 33
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=25.00 E-value=1.8e+02 Score=28.84 Aligned_cols=38 Identities=34% Similarity=0.519 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCCCCCCCCCCc
Q 021971 198 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG 238 (304)
Q Consensus 198 ~~~l~l~~~~sl~a~~GDl~~S~iKR~~gIKD~G~~iPGHG 238 (304)
+.++++|++++++..+|-- .++|+.+|-|--+.+|=||
T Consensus 275 ~~A~~iG~iag~i~~~~~~---~l~~~~~iDD~~~~~~vHg 312 (399)
T PF00909_consen 275 WGALLIGAIAGLISYFGVS---WLLKRLKIDDPVGAFAVHG 312 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHTS-HTTGHHHHCH
T ss_pred HHHHHhhhhHhhhhhhhee---cccceeEeccccceEeeee
Confidence 5788888888887766533 7889999999888888883
No 34
>PRK04099 truB tRNA pseudouridine synthase B; Provisional
Probab=24.46 E-value=42 Score=32.20 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=22.1
Q ss_pred HHHhhhcCCCCCCCCCCCCCcchhhhhhhhhH
Q 021971 218 ASGFKRAFKIKDFGDSIPGHGGITDRMDCQMV 249 (304)
Q Consensus 218 ~S~iKR~~gIKD~G~~iPGHGGilDR~Dsll~ 249 (304)
-+.+||.++.|.- ||+|-||.+-+=++
T Consensus 19 v~~ikk~~~~kKv-----GH~GTLDP~AtGvL 45 (273)
T PRK04099 19 LSRLKRKYGVKKA-----GFSGTLDPFAKGVL 45 (273)
T ss_pred HHHHHHHhCCCcc-----ccCccCCCCCeeEE
Confidence 4688999999874 99999999985443
No 35
>PF09150 Carot_N: Orange carotenoid protein, N-terminal ; InterPro: IPR015233 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Orange carotenoid-binding proteins (OCP) were first identified in cyanobacterial species, where they occur associated with phycobilisome in the cellular thylakoid membrane. These proteins function in photoprotection, and are essential for inhibiting white and blue-green light non-photochemical quenching (NPQ) [, ]. Carotenoids improve the photoprotectant activity by broadening OCP's absorption spectrum and facilitating the dissipation of absorbed energy. OCP acts as a homodimer, and binds one molecule of carotenoid (3'-hydroxyechinenone) and one chloride ion per subunit, where the carotenoid binding site is lined with a striking number of methionine residues. The carotenoid 3'-hydroxyechinenone is not found in higher plants. OCP has two domains: an N-terminal helical domain and a C-terminal domain that resembles a NTF2 (nuclear transport factor 2) domain. OCP can be proteolytically cleaved into a red form (RCP), which lacks 15 residues from the N terminus and approximately 150 residues from the C terminus []. This entry represents the N-terminal domain found predominantly in prokaryotic orange carotenoid proteins and related carotenoid-binding proteins. It adopts an alpha-helical structure consisting of two four-helix bundles [].; GO: 0031404 chloride ion binding, 0016037 light absorption, 0030089 phycobilisome; PDB: 3MG3_B 3MG1_A 3MG2_A 1M98_A.
Probab=24.13 E-value=94 Score=27.63 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 021971 269 VEMILEQILTALTYEEQKALYMKLGE 294 (304)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~~l~~~l~~ 294 (304)
.+.+++.|. +||.|||++..+-|-+
T Consensus 58 ae~ll~qik-~ms~~EQlq~MrDL~~ 82 (159)
T PF09150_consen 58 AEGLLNQIK-QMSQEEQLQAMRDLAN 82 (159)
T ss_dssp HHHHHHHHH-CS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCHHHHHHHHHHHHh
Confidence 578889886 6999999999988765
No 36
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=22.92 E-value=4.1e+02 Score=26.45 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=19.2
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHHh
Q 021971 122 LSPKKTWEGFIGASVATITSAFVLANIM 149 (304)
Q Consensus 122 iSP~KTwEG~iGG~i~t~i~~~~~~~~~ 149 (304)
+.-|-..++.+|++++.++..++..+..
T Consensus 36 ~~~n~~v~~ligai~~~li~~~~~~~~~ 63 (356)
T COG4956 36 FLNNEYVDALIGAIIFFLISFWFGKYVL 63 (356)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888988888777666655443
No 37
>PRK00020 truB tRNA pseudouridine synthase B; Provisional
Probab=22.25 E-value=52 Score=31.12 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=21.1
Q ss_pred HHhhhcCCCCCCCCCCCCCcchhhhhhhhhH
Q 021971 219 SGFKRAFKIKDFGDSIPGHGGITDRMDCQMV 249 (304)
Q Consensus 219 S~iKR~~gIKD~G~~iPGHGGilDR~Dsll~ 249 (304)
+.+||.+|.|. .||+|-||.+-+=++
T Consensus 28 ~~vkr~~~~kK-----vGH~GTLDP~AtGvL 53 (244)
T PRK00020 28 QRAKRTVDAAK-----AGHTGTLDPFATGLL 53 (244)
T ss_pred HHHHHHhCCCC-----CCcCCcCCCcCeeEE
Confidence 45699999997 499999999986443
No 38
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=21.70 E-value=76 Score=23.60 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHHHHhhcc
Q 021971 280 LTYEEQKALYMKLGEILQERL 300 (304)
Q Consensus 280 l~~~~~~~l~~~l~~~~~~~~ 300 (304)
-|.|||++|++.+++...++-
T Consensus 29 ysie~Q~~L~~~ik~~F~~~P 49 (58)
T PF06858_consen 29 YSIEEQLSLFKEIKPLFPNKP 49 (58)
T ss_dssp S-HHHHHHHHHHHHHHTTTS-
T ss_pred CCHHHHHHHHHHHHHHcCCCC
Confidence 368999999999998876553
No 39
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=21.15 E-value=1.5e+02 Score=22.59 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 021971 269 VEMILEQILTALTYEEQKALYMKLGEIL 296 (304)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~ 296 (304)
++.++..+-++++++||.++++.|.+.+
T Consensus 37 LGVlFE~~W~~~~~~ek~~m~~~l~~~l 64 (65)
T TIGR03092 37 LGVLFEAIWKHANEQEKDEMLETLEQGV 64 (65)
T ss_pred cHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 4455566667899999999999998765
No 40
>COG4803 Predicted membrane protein [Function unknown]
Probab=21.06 E-value=1.1e+02 Score=27.21 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=23.7
Q ss_pred hccCCCCCHHHHHHHHH--------hcCCHHHHHHHHHHHHH
Q 021971 261 FIVPQSFRVEMILEQIL--------TALTYEEQKALYMKLGE 294 (304)
Q Consensus 261 fi~~~~~~~~~~~~~~~--------~~l~~~~~~~l~~~l~~ 294 (304)
|+--+..+.++|+..+. ++|++||-.+|-+.+.+
T Consensus 121 FvLi~k~t~DKVl~~~~g~~g~vlrTSLs~e~E~~Lr~a~~~ 162 (170)
T COG4803 121 FVLISKMTEDKVLADLSGFGGTVLRTSLSKEEEQKLRAALSE 162 (170)
T ss_pred EEEeeccchHHHHHHhhccCCEEEEccCCHHHHHHHHHHHhc
Confidence 33446788999998764 46888888777666553
No 41
>PRK14122 tRNA pseudouridine synthase B; Provisional
Probab=21.00 E-value=58 Score=31.87 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=20.8
Q ss_pred HHhhhcCCCCCCCCCCCCCcchhhhhhhhh
Q 021971 219 SGFKRAFKIKDFGDSIPGHGGITDRMDCQM 248 (304)
Q Consensus 219 S~iKR~~gIKD~G~~iPGHGGilDR~Dsll 248 (304)
..+||.+++|.- ||+|-||.+-+=+
T Consensus 19 ~~vrr~l~~kKv-----GH~GTLDP~AtGv 43 (312)
T PRK14122 19 NRARRALGTRRV-----GHTGTLDPLATGV 43 (312)
T ss_pred HHHHHHhCCCCC-----CCCCCCCCcCeee
Confidence 578999999974 9999999996533
No 42
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=20.53 E-value=1.5e+02 Score=22.64 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 021971 269 VEMILEQILTALTYEEQKALYMKLGEI 295 (304)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~~l~~~l~~~ 295 (304)
++.++..+-++.+++||.++++.|.+.
T Consensus 38 LGVlFE~~W~~~~~~ek~~m~~~l~~~ 64 (65)
T PF14098_consen 38 LGVLFEVIWKNSDESEKQEMVNTLEQG 64 (65)
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 345555566789999999999998865
Done!