Query 021971
Match_columns 304
No_of_seqs 220 out of 1433
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 12:04:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021971.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021971hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zavu1 a.108.1.1 (U:1-30) Rib 54.1 11 0.00077 21.8 4.1 28 267-295 1-28 (30)
2 d1lnwa_ a.4.5.28 (A:) MexR rep 42.6 14 0.001 27.5 4.6 31 269-299 111-141 (141)
3 d2p97a1 d.157.1.12 (A:1-200) H 41.2 3.9 0.00028 32.7 1.1 32 217-248 160-196 (200)
4 d1m98a1 a.175.1.1 (A:2-175) Or 33.7 63 0.0046 25.8 7.4 25 269-294 63-87 (174)
5 d2fbha1 a.4.5.28 (A:8-144) Tra 28.7 27 0.002 25.4 4.1 30 269-298 104-133 (137)
6 d1tlha_ a.150.1.1 (A:) Anti-si 27.3 24 0.0017 25.3 3.3 30 267-297 48-77 (89)
7 d3broa1 a.4.5.28 (A:3-137) Tra 25.1 32 0.0023 24.9 3.9 30 269-298 106-135 (135)
8 d1u7ga_ f.44.1.1 (A:) Ammonium 24.0 8.9 0.00065 34.5 0.5 38 198-238 280-317 (383)
9 d3deua1 a.4.5.28 (A:2-141) Tra 23.4 47 0.0034 24.0 4.7 30 269-298 107-136 (140)
10 d1uptb_ a.193.1.1 (B:) Golgi a 22.5 35 0.0026 22.6 3.2 35 256-291 11-45 (58)
11 d1vmea2 d.157.1.3 (A:1-250) RO 22.3 21 0.0015 28.4 2.4 35 206-241 198-232 (250)
12 d1ycga2 d.157.1.3 (A:2-250) Ni 20.3 19 0.0014 28.7 1.7 36 206-241 195-231 (249)
13 d1bk8a_ g.3.7.5 (A:) Antimicro 20.2 7 0.00051 25.4 -0.8 11 124-134 6-16 (50)
No 1
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=54.13 E-value=11 Score=21.76 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 021971 267 FRVEMILEQILTALTYEEQKALYMKLGEI 295 (304)
Q Consensus 267 ~~~~~~~~~~~~~l~~~~~~~l~~~l~~~ 295 (304)
++++.+...|- +|+..|-.+|+++|.+-
T Consensus 1 m~~eeiv~aie-kltvaelaelvk~ledk 28 (30)
T d1zavu1 1 MTIDEIIEAIE-KLTVSELAELVKKLEDK 28 (30)
T ss_dssp CCHHHHHHHHH-HSBHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-HhhHHHHHHHHHHHHhh
Confidence 36888999776 59999999999988753
No 2
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=42.59 E-value=14 Score=27.53 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc
Q 021971 269 VEMILEQILTALTYEEQKALYMKLGEILQER 299 (304)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~ 299 (304)
.+...+.+...+++||+.++.+.|++++..+
T Consensus 111 ~~~~~~~~~~~ls~~e~~~l~~~L~kl~a~~ 141 (141)
T d1lnwa_ 111 MSRVHDELFAPLTPVEQATLVHLLDQCLAAQ 141 (141)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Confidence 4566677778899999999999999998753
No 3
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]}
Probab=41.18 E-value=3.9 Score=32.65 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=23.8
Q ss_pred HHHHhhhcCCCCCCCCCCCCCcch-----hhhhhhhh
Q 021971 217 FASGFKRAFKIKDFGDSIPGHGGI-----TDRMDCQM 248 (304)
Q Consensus 217 ~~S~iKR~~gIKD~G~~iPGHGGi-----lDR~Dsll 248 (304)
....++|-...+|+-.++||||.. -+|++.++
T Consensus 160 ~~~sl~rl~~l~~~~~i~pgHG~~~~~~~~~rl~~l~ 196 (200)
T d2p97a1 160 VVASVRRLAALEKVEAVLVGDGWSVFRDGRDRLKELV 196 (200)
T ss_dssp HHHHHHHHHTCTTCCEEEESBBCCBCSCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEECCCCchHhcCHHHHHHHHH
Confidence 346688888999988999999954 34665543
No 4
>d1m98a1 a.175.1.1 (A:2-175) Orange carotenoid protein, N-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]}
Probab=33.73 E-value=63 Score=25.81 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 021971 269 VEMILEQILTALTYEEQKALYMKLGE 294 (304)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~~l~~~l~~ 294 (304)
.+.+++.|. +||.|||++..+-|-+
T Consensus 63 ae~ll~qik-~ms~~EQlq~MrDL~~ 87 (174)
T d1m98a1 63 AENTLQEIR-QMTPLQQTQAMCDLAN 87 (174)
T ss_dssp HHHHHHHHH-HSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCHHHHHHHHHHHHh
Confidence 578889896 5999999999987764
No 5
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=28.66 E-value=27 Score=25.36 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Q 021971 269 VEMILEQILTALTYEEQKALYMKLGEILQE 298 (304)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 298 (304)
...+.+.+...+++||+..+.+.|.+++.+
T Consensus 104 ~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~ 133 (137)
T d2fbha1 104 AASVRNDVLTGIDESEQALCQQVLLRILAN 133 (137)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 455666677789999999999999887664
No 6
>d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4 [TaxId: 10665]}
Probab=27.33 E-value=24 Score=25.35 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 021971 267 FRVEMILEQILTALTYEEQKALYMKLGEILQ 297 (304)
Q Consensus 267 ~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~ 297 (304)
.+-.+.-+ +.+.||++|+.++.++.++...
T Consensus 48 ft~~sFrq-m~~~Lt~~er~elie~FneG~~ 77 (89)
T d1tlha_ 48 LNQNSFRK-IVSELTQEDKKTLIDEFNEGFE 77 (89)
T ss_dssp CCHHHHHH-HHHSSCHHHHHHHHHHCHHHHH
T ss_pred HHHhHHHH-HHHHCCHHHHHHHHHHHHhHHH
Confidence 44445545 4567999999999999988554
No 7
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=25.05 E-value=32 Score=24.87 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=24.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Q 021971 269 VEMILEQILTALTYEEQKALYMKLGEILQE 298 (304)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 298 (304)
.+.....+...+++||+..+.+.|+++++|
T Consensus 106 ~~~~~~~~~~~l~~ee~~~~~~~L~~l~~N 135 (135)
T d3broa1 106 MDSDQSQMTSGLNKEEVVFLEKILKRMIES 135 (135)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 355666677789999999999999998764
No 8
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=24.04 E-value=8.9 Score=34.46 Aligned_cols=38 Identities=29% Similarity=0.417 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCCCCCCCCCCc
Q 021971 198 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG 238 (304)
Q Consensus 198 ~~~l~l~~~~sl~a~~GDl~~S~iKR~~gIKD~G~~iPGHG 238 (304)
+.++++|++++++..++- ..+||.+++-|--+.+|-||
T Consensus 280 ~~A~~iG~i~g~i~~~~~---~~l~~~~~iDD~~~~~~vHg 317 (383)
T d1u7ga_ 280 GGALIIGVVAGLAGLWGV---TMLKRLLRVDDPCDVFGVHG 317 (383)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHCSCCGGGHHHHHH
T ss_pred hhHHHHHhhccHHHHHHH---HHHHhhcccccccceEeehh
Confidence 578888999888888763 45788889999888888883
No 9
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=23.37 E-value=47 Score=24.01 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Q 021971 269 VEMILEQILTALTYEEQKALYMKLGEILQE 298 (304)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 298 (304)
.+.....+...+++||+..+.+.|.++.+|
T Consensus 107 ~~~~~~~~~~~l~~ee~~~~~~~L~~i~~n 136 (140)
T d3deua1 107 IHKTRGEILAGISSEEIELLIKLIAKLEHN 136 (140)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 345566677789999999999988887654
No 10
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.48 E-value=35 Score=22.60 Aligned_cols=35 Identities=3% Similarity=0.229 Sum_probs=28.4
Q ss_pred HHHHHhccCCCCCHHHHHHHHHhcCCHHHHHHHHHH
Q 021971 256 IYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMK 291 (304)
Q Consensus 256 ~y~~~fi~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 291 (304)
+.++++.-+.+.++.+|+..+.+ .++++-..++++
T Consensus 11 vLfeYMmG~E~~tlaKVi~av~k-F~~~Q~q~iL~k 45 (58)
T d1uptb_ 11 VLFEYMMGRETKTMAKVITTVLK-FPDDQTQKILER 45 (58)
T ss_dssp HHHHHHTTSSHHHHHHHHHHHTT-CCHHHHHHHHHH
T ss_pred HHHHHHcCcchhHHHHHHHHHHh-CCHHHHHHHHHH
Confidence 45677777788999999998875 999988888765
No 11
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=22.27 E-value=21 Score=28.40 Aligned_cols=35 Identities=20% Similarity=0.471 Sum_probs=24.0
Q ss_pred HHHHhhhhhhHHHHHhhhcCCCCCCCCCCCCCcchh
Q 021971 206 FASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGIT 241 (304)
Q Consensus 206 ~~sl~a~~GDl~~S~iKR~~gIKD~G~~iPGHGGil 241 (304)
.....++.-+-....+||..+. |...++||||=++
T Consensus 198 ~~~~~~~~~~~~~~sl~~l~~l-~~~~I~PGHGpi~ 232 (250)
T d1vmea2 198 IVTVIGHYKNYILEGAEKLSSL-KIKALLPGHGLIW 232 (250)
T ss_dssp HHHHHGGGHHHHHHHHHHHHTS-CCSEEEESSSCBB
T ss_pred hcccccccHHHHHHHHHHHHCC-CCCEEECCCChhH
Confidence 3444555556666778887665 4567999999776
No 12
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]}
Probab=20.26 E-value=19 Score=28.73 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=25.1
Q ss_pred HHHHhhhhhhHHHHHhhhcCCC-CCCCCCCCCCcchh
Q 021971 206 FASIIAPFGGFFASGFKRAFKI-KDFGDSIPGHGGIT 241 (304)
Q Consensus 206 ~~sl~a~~GDl~~S~iKR~~gI-KD~G~~iPGHGGil 241 (304)
+..+.++..+-+.+.+||-..+ -|...++||||.++
T Consensus 195 ~~~~~~~~~~~~~~~l~~l~~l~l~~~~i~PgHGpv~ 231 (249)
T d1ycga2 195 YANILMPFSNLITKKLDEIQKINLAIKTIAPSHGIIW 231 (249)
T ss_dssp HHHHTGGGHHHHHHHHHHHHHTTCCCSEEEESSSCBB
T ss_pred chhccccCHHHHHHHHHHHHccCCCCCEEEeCCCchH
Confidence 4456677788888888886443 12235789999887
No 13
>d1bk8a_ g.3.7.5 (A:) Antimicrobial protein 1 (AH-AMP1) {Horse chestnut (Aesculus hippocastanum) [TaxId: 43364]}
Probab=20.16 E-value=7 Score=25.41 Aligned_cols=11 Identities=45% Similarity=1.054 Sum_probs=8.7
Q ss_pred CCCCchHHHHH
Q 021971 124 PKKTWEGFIGA 134 (304)
Q Consensus 124 P~KTwEG~iGG 134 (304)
|+|||.|+-|-
T Consensus 6 ~S~TWsG~Cgn 16 (50)
T d1bk8a_ 6 PSQTWSGNCGN 16 (50)
T ss_dssp CCSSSCSCCCC
T ss_pred CCCceeeccCC
Confidence 78999987663
Done!