BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021972
(304 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6R0H0|ASG4_ARATH Transcription factor ASG4 OS=Arabidopsis thaliana GN=ASG4 PE=2 SV=1
Length = 287
Score = 248 bits (633), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 141/281 (50%), Positives = 179/281 (63%), Gaps = 28/281 (9%)
Query: 7 NPAEGFYLDPNGMALPGLGPFASSATTPTAAAAAAGTSTVSTSEDPSKKIRKPYTITKSR 66
NP++ L P M+LPG +ATT + T+S EDP+KK+RKPYTITKSR
Sbjct: 5 NPSQAHCL-PMKMSLPGFNTLPHTATT--IPVSIRSNRTMSFFEDPTKKVRKPYTITKSR 61
Query: 67 ESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAEHLPPP 126
E+WTE EHDKFLEAL LFDRDWKKI+AF+GSKTVIQIRSHAQKYFLKVQKNGT EHLPPP
Sbjct: 62 ENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHLPPP 121
Query: 127 RPKRKAAHPYPQKASKNAPMLSQVSGSFQSSSAQLEPGHFLRPDSSSMLMIPMASAATSW 186
RPKRKA HPYPQKA K + SS+A + + +S ++ +T+
Sbjct: 122 RPKRKANHPYPQKAPK---------FTLSSSNALFQHDYLYNTNSHPVI-------STTR 165
Query: 187 TNNVQTVSLS-PASKGPE---VANNRSNSTDSTPKARVSGELTDQGGELTDQGNNSHPLR 242
+ + +S P+S E V+ N +++ S K R T E DQ + P R
Sbjct: 166 KHGLVHCDVSIPSSVIKEEFGVSENCCSTSSSRDKQR-----TRIVTETNDQESCGKPHR 220
Query: 243 VLPDFAQVYTFIGSVFDPNASDHVQKLKKMDPIDVETVCYI 283
V P+FA+VY FIGSVFDP + HV++LK+MDPI++ETV +
Sbjct: 221 VAPNFAEVYNFIGSVFDPKTTGHVKRLKEMDPINLETVLLL 261
>sp|Q54IF9|MYBG_DICDI Myb-like protein G OS=Dictyostelium discoideum GN=mybG PE=3 SV=1
Length = 423
Score = 166 bits (419), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 132/245 (53%), Gaps = 19/245 (7%)
Query: 53 SKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFL 112
S K RKPYTI+K RE+WT+ EH KFLEAL LFDRDWKKIE+F+GSKTVIQIRSHAQKYF+
Sbjct: 28 SLKSRKPYTISKQRENWTDEEHQKFLEALTLFDRDWKKIESFVGSKTVIQIRSHAQKYFI 87
Query: 113 KVQKNGTAEHLPPPRPKRKAAHPYPQKASKNAPMLSQVSGSFQSSSAQLEPGHFLRPDSS 172
KVQKN T E +PPPRPKRK+ PYPQK + G+F S L HF+ S
Sbjct: 88 KVQKNNTGERIPPPRPKRKSIQPYPQKQKHDG------MGAFIPDS--LSGNHFISSSSF 139
Query: 173 SMLMIPMASAATSWTNNVQTVSLSPASKGPEVANNRSNSTDSTPKARVSGELTDQGGELT 232
+ M N+ ++P+ ++ + + GG
Sbjct: 140 ATWM-----TYRGLMPNISESQINPSDLQKQLEQLQQAQQYIQQAVTTAQSSQRNGGLPP 194
Query: 233 DQGNNSHPLRVLPDFAQVYTFIGSVFDPNASDHVQKLKKMDPIDVETVCYIKNSTFFFHS 292
+ +N+ + P+F ++Y F+ ++F+ N + + L + ID ET+ H+
Sbjct: 195 NPSSNNGGTTLTPNFPKIYAFLSNLFESNGTSFTEALSDLSMIDRETM------QILMHN 248
Query: 293 LRIKV 297
L I +
Sbjct: 249 LAINL 253
>sp|Q6R0H1|LHY_ARATH Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2
Length = 645
Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 75/119 (63%), Gaps = 10/119 (8%)
Query: 45 TVSTSEDPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIR 104
T ++ E+ K RKPYTITK RE WTE EH++FLEAL+L+ R W++IE IG+KT +QIR
Sbjct: 3 TNTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQIR 62
Query: 105 SHAQKYFLKVQKNGTAEHLPPPRP----------KRKAAHPYPQKASKNAPMLSQVSGS 153
SHAQK+F K++K + +P + KRK PYP+K N SQVS +
Sbjct: 63 SHAQKFFTKLEKEAEVKGIPVCQALDIEIPPPRPKRKPNTPYPRKPGNNGTSSSQVSSA 121
>sp|P92973|CCA1_ARATH Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1
Length = 608
Score = 101 bits (251), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 57/76 (75%)
Query: 45 TVSTSEDPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIR 104
T S+ ED K RKPYTITK RE WTE EH++F+EAL+L+ R W+KIE + +KT +QIR
Sbjct: 3 TNSSGEDLVIKTRKPYTITKQRERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQIR 62
Query: 105 SHAQKYFLKVQKNGTA 120
SHAQK+F KV+K A
Sbjct: 63 SHAQKFFSKVEKEAEA 78
>sp|Q54Z40|MYBH_DICDI Myb-like protein H OS=Dictyostelium discoideum GN=mybH PE=3 SV=1
Length = 1217
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 43/54 (79%)
Query: 65 SRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 118
+R SWT+ E F+EA +L+D+D KKI+ + +KT++Q+RSHAQK+ LK++KNG
Sbjct: 149 TRSSWTKEEERLFVEAYKLYDKDNKKIQEHVKTKTILQVRSHAQKFALKLEKNG 202
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 69 WTEPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKV-QKNG 118
W+ EH+ FL+A++ + R +WK I I S+ +QI++HA+ YF K+ Q+NG
Sbjct: 232 WSNEEHELFLKAIEKYGRGNWKLISTLIKSRNTLQIKNHARIYFDKISQQNG 283
>sp|Q869R9|MYBJ_DICDI Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1
Length = 734
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 63 TKSRESWTEPEHDKFLEALQLFDRD-WKKIEAFIGSKTVIQIRSHAQKYFLK 113
T ++ WT+ EH +FL +Q+ + WK+I F+G++T QI+SHAQKY+L+
Sbjct: 373 TSLKQGWTKEEHIRFLNGIQIHGKGAWKEIAQFVGTRTPTQIQSHAQKYYLR 424
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 69 WTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAEHLPPPRP 128
WT E + F + L F R W KI IGS+TV+Q++S+A++YF KN L P
Sbjct: 121 WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYF----KNKVKCGLDKETP 176
Query: 129 KRKAAH 134
+K H
Sbjct: 177 NQKTGH 182
>sp|Q54HX6|MYBI_DICDI Myb-like protein I OS=Dictyostelium discoideum GN=mybI PE=3 SV=1
Length = 977
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 64 KSRESWTEPEHDKFLEALQLF-DRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116
K WT EH +F+EAL + +D K I ++ ++ Q+R+HAQKYFL++ +
Sbjct: 170 KQSRYWTPEEHSRFIEALSKYGHKDVKSISQYVSTRNPTQVRTHAQKYFLRIDR 223
>sp|Q5RGA4|MYSM1_DANRE Histone H2A deubiquitinase MYSM1 OS=Danio rerio GN=mysm1 PE=2 SV=2
Length = 822
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 55 KIRKPYTITKSRES-WTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 111
K++KP + + ++ W E E + F + L F R W KI IG++TV+Q++S+A++YF
Sbjct: 87 KVKKPLVKSSAAQTRWAEEEKELFEKGLAQFGRRWTKIAKLIGTRTVLQVKSYAKQYF 144
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 69 WTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAE 121
WT E + F + L + R W KI IGS+TV+Q++S+A++YF KN +E
Sbjct: 122 WTSEEKELFEQGLVKYGRRWTKIAKLIGSRTVLQVKSYARQYFKNKAKNDGSE 174
>sp|A0JMR6|MYSM1_XENLA Histone H2A deubiquitinase MYSM1 OS=Xenopus laevis GN=mysm1 PE=2
SV=1
Length = 818
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 54 KKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 111
K++R P + S WT+ E + F + L F R W I IGS++V+Q++++A+ YF
Sbjct: 97 KRVRSPAKASSSPVKWTKEEKNLFEQGLATFGRRWTSIARLIGSRSVLQVKNYARHYF 154
>sp|Q86HX9|MYBK_DICDI Myb-like protein K OS=Dictyostelium discoideum GN=mybK PE=3 SV=1
Length = 894
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 69 WTEPEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTA 120
WT EH+KFLEA+Q F +D+ I F+ ++ Q+R+H Y LK QK A
Sbjct: 657 WTSEEHNKFLEAVQQFGIKDYHAIAKFVQTRNHHQVRTHVNTY-LKNQKKAEA 708
>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA
PE=2 SV=1
Length = 307
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 47 STSEDPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDR-DWKKI-EAFIGSKTVIQIR 104
S+S PS++ RK WTE EH FL L+ + + DW+ I F+ ++T Q+
Sbjct: 118 SSSGRPSEQERKKGV------PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVA 171
Query: 105 SHAQKYFLKVQKNG 118
SHAQKYF++ G
Sbjct: 172 SHAQKYFIRQLSGG 185
>sp|Q2V9B0|MY1R1_SOLTU Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1
Length = 297
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 69 WTEPEHDKFLEALQLFDR-DWKKI-EAFIGSKTVIQIRSHAQKYF 111
WTE EH FL LQ + DW+ I F+ ++T Q+ SHAQKYF
Sbjct: 97 WTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYF 141
>sp|Q69Z66|MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 OS=Mus musculus GN=Mysm1 PE=2 SV=2
Length = 819
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 69 WTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 111
WT E + F + L F R W KI + S+TV+Q++S+A++YF
Sbjct: 118 WTVEEKELFEQGLAKFGRRWTKIATLLKSRTVLQVKSYARQYF 160
>sp|Q6KAQ7|ZZZ3_MOUSE ZZ-type zinc finger-containing protein 3 OS=Mus musculus GN=Zzz3
PE=2 SV=2
Length = 910
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 69 WTEPEHDKFLEAL------QLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 118
WT E K + L ++ R W+KI +G++T Q+ S QKYF+K+ K G
Sbjct: 662 WTVEEQKKLEQLLLKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAG 717
>sp|Q8IYH5|ZZZ3_HUMAN ZZ-type zinc finger-containing protein 3 OS=Homo sapiens GN=ZZZ3
PE=1 SV=1
Length = 903
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 69 WTEPEHDKFLEAL------QLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 118
WT E K + L ++ R W+KI +G++T Q+ S QKYF+K+ K G
Sbjct: 655 WTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAG 710
>sp|Q8CFE3|RCOR1_MOUSE REST corepressor 1 OS=Mus musculus GN=Rcor1 PE=1 SV=2
Length = 477
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 57 RKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRS 105
R P I K WT E ++A++ + RD++ I IG+K+V+Q+++
Sbjct: 365 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN 413
>sp|Q9UKL0|RCOR1_HUMAN REST corepressor 1 OS=Homo sapiens GN=RCOR1 PE=1 SV=1
Length = 482
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 57 RKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRS 105
R P I K WT E ++A++ + RD++ I IG+K+V+Q+++
Sbjct: 371 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN 419
>sp|P32591|SWI3_YEAST SWI/SNF complex subunit SWI3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SWI3 PE=1 SV=1
Length = 825
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 10/142 (7%)
Query: 15 DPNGMALPGLGPFASSATTPTAAAAAAGTSTVSTSEDPSKKIRKPYTITKSRESWTEPEH 74
D NG G + +T T+ A + P KK++ + + E+W++ +
Sbjct: 476 DENGDKNDNGGKMNNEVSTSTSMTGDANLLEEGETSRPLKKVK---ILEQIDENWSKEDL 532
Query: 75 DKFLEALQLFDRDWKKIEAFIGSKTVIQ-----IRSHAQKYFLKVQKNGTAEHLPPPRPK 129
K L+ +Q F DW K+ +G+K+ Q ++ + FL NG ++ P
Sbjct: 533 QKLLKGIQEFGADWYKVAKNVGNKSPEQCILRFLQLPIEDKFLYGDGNGKGDNDNGLGPL 592
Query: 130 RKAAHPYPQKASKNAPMLSQVS 151
+ A H P S+N P+LS ++
Sbjct: 593 KYAPH-LPFSKSEN-PVLSTIA 612
>sp|Q54YB7|MYBF_DICDI Myb-like protein F OS=Dictyostelium discoideum GN=mybF PE=3 SV=1
Length = 564
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 66 RESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116
R WT E + + E + ++WKKI+ K+ Q+ SH Q Y +K+ K
Sbjct: 414 RTVWTLEEEELYKEVFNHYGKNWKKIKTHFPDKSKSQVTSHGQ-YLIKINK 463
>sp|Q9XI07|SWI3C_ARATH SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1
SV=1
Length = 807
Score = 35.4 bits (80), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 67 ESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 114
++WT+ E LEA++L++ +W +I +GSK+ Q H FL++
Sbjct: 401 DNWTDQETLLLLEAVELYNENWVQIADHVGSKSKAQCILH----FLRL 444
>sp|Q54K19|MYBD_DICDI Myb-like protein D OS=Dictyostelium discoideum GN=mybD PE=3 SV=1
Length = 595
Score = 35.4 bits (80), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 69 WTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAE--HLPPP 126
WT+ E +K + + + WK I + KT Q++SH Q Y +++ G E H
Sbjct: 443 WTQEEDEKMAQLYNKYGKSWKAIHSHFDDKTREQVQSHGQ-YLIRI---GKLEDIHRDGR 498
Query: 127 RPKRKAAHPYPQKASK 142
+ +RK ++ +
Sbjct: 499 KERRKGKQALQERQQQ 514
>sp|Q5FWT8|RCOR2_RAT REST corepressor 2 OS=Rattus norvegicus GN=Rcor2 PE=2 SV=1
Length = 523
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 12/111 (10%)
Query: 7 NPAEGFYLDPNGMA------------LPGLGPFASSATTPTAAAAAAGTSTVSTSEDPSK 54
P +G YL P G+ L GL S + +S E
Sbjct: 258 RPPKGMYLSPEGLTAVSGSPDLANLTLRGLDSQLISLKRQVQSMKQTNSSLRQALEGGID 317
Query: 55 KIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRS 105
+R P TK WT E ++A++ + +D+ I IG+KT+ Q+++
Sbjct: 318 PLRPPEANTKFNSRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKT 368
>sp|Q8IZ40|RCOR2_HUMAN REST corepressor 2 OS=Homo sapiens GN=RCOR2 PE=1 SV=2
Length = 523
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 12/111 (10%)
Query: 7 NPAEGFYLDPNGMA------------LPGLGPFASSATTPTAAAAAAGTSTVSTSEDPSK 54
P +G YL P G+ L GL S + +S E
Sbjct: 258 RPPKGMYLSPEGLTAVSGSPDLANLTLRGLDSQLISLKRQVQSMKQTNSSLRQALEGGID 317
Query: 55 KIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRS 105
+R P TK WT E ++A++ + +D+ I IG+KT+ Q+++
Sbjct: 318 PLRPPEANTKFNSRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKT 368
>sp|Q8C796|RCOR2_MOUSE REST corepressor 2 OS=Mus musculus GN=Rcor2 PE=2 SV=1
Length = 523
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 12/111 (10%)
Query: 7 NPAEGFYLDPNGMA------------LPGLGPFASSATTPTAAAAAAGTSTVSTSEDPSK 54
P +G YL P G+ L GL S + +S E
Sbjct: 258 RPPKGMYLSPEGLTAVSGSPDLANLTLRGLDSQLISLKRQVQSMKQTNSSLRQALEGGID 317
Query: 55 KIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRS 105
+R P TK WT E ++A++ + +D+ I IG+KT+ Q+++
Sbjct: 318 PLRPPEANTKFNSRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKT 368
>sp|Q7Y0W3|EHD1_ORYSI Two-component response regulator EHD1 OS=Oryza sativa subsp. indica
PE=2 SV=1
Length = 341
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 16 PNGMALPGLGPFASSATTPTAAAAAAGTSTVSTSEDPSKKIRKPYTITKSRESWTEPEHD 75
P+ +A+ P + +T A+ A + + +I + KSR +WT H
Sbjct: 150 PSILAMARATPATTRSTATEASLAPLENEVRDDMVNYNGEITDIRDLGKSRLTWTTQLHR 209
Query: 76 KFLEALQLFDRDW---KKIEAFIGSK--TVIQIRSHAQKYFLKVQK 116
+F+ A+ D KKI + K T Q+ SH QKY ++++K
Sbjct: 210 QFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKK 255
>sp|Q7Y0W5|EHD1_ORYSJ Two-component response regulator EHD1 OS=Oryza sativa subsp.
japonica GN=EHD1 PE=1 SV=1
Length = 341
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 16 PNGMALPGLGPFASSATTPTAAAAAAGTSTVSTSEDPSKKIRKPYTITKSRESWTEPEHD 75
P+ +A+ P + +T A+ A + + +I + KSR +WT H
Sbjct: 150 PSILAMARATPATTRSTATEASLAPLENEVRDDMVNYNGEITDIRDLGKSRLTWTTQLHR 209
Query: 76 KFLEALQLFDRDW---KKIEAFIGSK--TVIQIRSHAQKYFLKVQK 116
+F+ A+ D KKI + K T Q+ SH QKY ++++K
Sbjct: 210 QFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKK 255
>sp|Q9M9B9|ARR19_ARATH Putative two-component response regulator ARR19 OS=Arabidopsis
thaliana GN=ARR19 PE=2 SV=2
Length = 407
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 15/86 (17%)
Query: 41 AGTSTVSTSEDPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWK---KI------ 91
G + + KK RKP R +WTE H KFLEA+++ K K+
Sbjct: 198 GGNGIQNMEKKQGKKPRKP------RMTWTEELHQKFLEAIEIIGGIEKANPKVLVECLQ 251
Query: 92 EAFIGSKTVIQIRSHAQKYFLKVQKN 117
E I T + SH QK+ + +++N
Sbjct: 252 EMRIEGITRSNVASHLQKHRINLEEN 277
>sp|F4JVB8|RADL1_ARATH Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1
Length = 100
Score = 33.5 bits (75), Expect = 2.2, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 69 WTEPEHDKFLEALQLFDRD----WKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAE--H 122
WT ++ F +AL +D+D W+ + +G KT +++ H Y L VQ + E H
Sbjct: 14 WTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRH---YELLVQDINSIENGH 70
Query: 123 LPPP 126
+P P
Sbjct: 71 VPFP 74
>sp|Q6A332|ALY3_ARATH Protein ALWAYS EARLY 3 OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1
Length = 1132
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 69 WTEPEHDKFLEALQLFDRDWKKIEAFIGSKT 99
W++ E ++F E + F ++WKK+ F+ S++
Sbjct: 47 WSKEELERFYEGYRKFGKEWKKVAGFVHSRS 77
>sp|Q90WN5|RCOR1_XENLA REST corepressor 1 OS=Xenopus laevis GN=rcor1 PE=2 SV=1
Length = 431
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 26/37 (70%)
Query: 69 WTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRS 105
WT E ++A++++ RD++ I IG+K+V+Q+++
Sbjct: 332 WTTEEQLLAVQAIRMYGRDFQAISDVIGNKSVVQVKN 368
>sp|O62541|HUNB_DROYA Protein hunchback OS=Drosophila yakuba GN=hb PE=3 SV=1
Length = 759
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 5 IPNPAEGFYLDPNGMALPGLGPFASSATTPTAAAAAAGTSTVSTSEDPSKKIRKPYTITK 64
+PNP + FY G P P +SA+T A A G+S + P + P + K
Sbjct: 136 LPNPMQHFY---GGNLRPSPQPTPTSASTVAPVAVATGSSEKLQALTPPMDVTPPKSPAK 192
Query: 65 SRESWTEP--EHDKF 77
S +S EP EHD+
Sbjct: 193 SSQSNIEPEKEHDQM 207
>sp|Q8LJT8|TKI1_ARATH TSL-kinase interacting protein 1 OS=Arabidopsis thaliana GN=TKI1
PE=1 SV=2
Length = 743
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 23 GLGPFASSATTPTAAAAAAGTSTVSTSEDPSKKIRKPYTITKSRESWTEPEHDKFLEALQ 82
G G ++ + P ++A ++S ++ P+KK + + +WT E + F AL+
Sbjct: 22 GEGRLSNQNSNPNLLSSA----SISITQFPAKKPTRQWA------AWTHQEEESFFTALR 71
Query: 83 LFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116
++++KI + + SK Q+R + + ++ K
Sbjct: 72 QVGKNFEKITSRVQSKNKDQVRHYYYRLVRRMNK 105
>sp|O62538|HUNB_DROSE Protein hunchback OS=Drosophila sechellia GN=hb PE=3 SV=1
Length = 757
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 5 IPNPAEGFYLDPNGMALPGLGPFASSATTPTAAAAAAGTSTVSTSEDPSKKIRKPYTITK 64
+PNP + FY G P P +SA+T A A G+S + P + P + K
Sbjct: 134 LPNPMQHFY---GGNLRPSPQPTPTSASTIAPVAVATGSSEKLQALTPPMDVTPPKSPAK 190
Query: 65 SRESWTEP--EHDKF 77
S +S EP EHD+
Sbjct: 191 SSQSNIEPEKEHDQM 205
>sp|P05084|HUNB_DROME Protein hunchback OS=Drosophila melanogaster GN=hb PE=1 SV=2
Length = 758
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 5 IPNPAEGFYLDPNGMALPGLGPFASSATTPTAAAAAAGTSTVSTSEDPSKKIRKPYTITK 64
+PNP + FY G P P +SA+T A A G+S + P + P + K
Sbjct: 135 LPNPMQHFY---GGNLRPSPQPTPTSASTIAPVAVATGSSEKLQALTPPMDVTPPKSPAK 191
Query: 65 SRESWTEP--EHDKF 77
S +S EP EHD+
Sbjct: 192 SSQSNIEPEKEHDQM 206
>sp|O62537|HUNB_DROOR Protein hunchback OS=Drosophila orena GN=hb PE=3 SV=1
Length = 767
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 5 IPNPAEGFYLDPNGMALPGLGPFASSATTPTAAAAAAGTSTVSTSEDPSKKIRKPYTITK 64
+PNP + FY G P P SA+T + A A G+S + P + P + K
Sbjct: 137 LPNPMQHFY---GGNLRPSPQPTPISASTVASVAVATGSSEKLQALTPPMDVTPPKSPAK 193
Query: 65 SRESWTEP--EHDKF 77
S +S EP EHD+
Sbjct: 194 SSQSNIEPEKEHDQM 208
>sp|Q9Y618|NCOR2_HUMAN Nuclear receptor corepressor 2 OS=Homo sapiens GN=NCOR2 PE=1 SV=2
Length = 2525
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 69 WTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRS 105
WTE E + + L R+W I +GSKTV Q ++
Sbjct: 615 WTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCKN 651
>sp|Q9WU42|NCOR2_MOUSE Nuclear receptor corepressor 2 OS=Mus musculus GN=Ncor2 PE=1 SV=3
Length = 2472
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 69 WTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRS 105
WTE E + + L R+W I +GSKTV Q ++
Sbjct: 611 WTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCKN 647
>sp|O55225|OTOG_MOUSE Otogelin OS=Mus musculus GN=Otog PE=1 SV=2
Length = 2910
Score = 32.0 bits (71), Expect = 5.5, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 3 SKIPNPAEGFYLDPN---GMALPGLGPFASSATTPTAAAAAAGTSTVSTSEDPSKKIRKP 59
S P P +G + P+ G LP G + A P +AA ST + SKK+ P
Sbjct: 1863 SPSPKPPQGTGMAPDQMLGATLPSFGASSVIAGVPPTVSAAPRKSTTQRAAILSKKVSPP 1922
Query: 60 YTITKS 65
I+ S
Sbjct: 1923 TLISDS 1928
>sp|P34454|YMA9_CAEEL Uncharacterized protein F54F2.9 OS=Caenorhabditis elegans
GN=F54F2.9 PE=4 SV=3
Length = 414
Score = 31.2 bits (69), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 64 KSRESWTEPEHDKFLEALQLF----DRDWKKIEAFIGSKTVIQI 103
KS + W++ E F ALQ + D W++I IGSKT Q+
Sbjct: 352 KSEDDWSQAEQKAFETALQKYPKGTDERWERISEEIGSKTKKQV 395
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.127 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,166,982
Number of Sequences: 539616
Number of extensions: 4712065
Number of successful extensions: 16138
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 15964
Number of HSP's gapped (non-prelim): 243
length of query: 304
length of database: 191,569,459
effective HSP length: 117
effective length of query: 187
effective length of database: 128,434,387
effective search space: 24017230369
effective search space used: 24017230369
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)