Query 021972
Match_columns 304
No_of_seqs 210 out of 697
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 12:04:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021972.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021972hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yus_A SWI/SNF-related matrix- 99.7 4.4E-17 1.5E-21 126.3 5.3 61 51-111 3-63 (79)
2 2cu7_A KIAA1915 protein; nucle 99.6 9.3E-16 3.2E-20 115.4 8.8 66 63-135 6-71 (72)
3 2yum_A ZZZ3 protein, zinc fing 99.6 1.7E-15 5.7E-20 114.3 7.3 56 63-118 5-66 (75)
4 2elk_A SPCC24B10.08C protein; 99.5 3.3E-14 1.1E-18 103.4 6.3 48 65-112 8-57 (58)
5 2iw5_B Protein corest, REST co 99.5 1.9E-14 6.5E-19 131.5 5.6 67 50-116 117-183 (235)
6 1x41_A Transcriptional adaptor 99.5 7.1E-14 2.4E-18 102.0 6.4 50 63-112 5-55 (60)
7 2xag_B REST corepressor 1; ami 99.4 2.8E-13 9.4E-18 134.4 5.6 67 50-116 364-430 (482)
8 1guu_A C-MYB, MYB proto-oncoge 99.4 1.3E-12 4.3E-17 92.1 6.5 47 65-111 2-49 (52)
9 2d9a_A B-MYB, MYB-related prot 99.3 2.1E-12 7.1E-17 93.6 5.7 49 63-111 5-54 (60)
10 2cqr_A RSGI RUH-043, DNAJ homo 99.3 7.1E-12 2.4E-16 96.1 8.4 47 65-111 17-67 (73)
11 1gvd_A MYB proto-oncogene prot 99.3 2.5E-12 8.6E-17 90.7 5.5 47 65-111 2-49 (52)
12 2eqr_A N-COR1, N-COR, nuclear 99.3 4.5E-12 1.5E-16 93.1 6.8 44 64-107 10-53 (61)
13 2din_A Cell division cycle 5-l 99.3 1.1E-11 3.7E-16 91.4 8.0 55 63-118 6-60 (66)
14 2ltp_A Nuclear receptor corepr 98.9 5.7E-13 2E-17 104.6 0.0 55 63-117 13-67 (89)
15 2cjj_A Radialis; plant develop 99.2 1.2E-11 4.1E-16 98.8 7.1 63 66-129 8-74 (93)
16 1w0t_A Telomeric repeat bindin 99.2 2E-11 6.7E-16 86.7 6.8 46 66-111 2-50 (53)
17 2dim_A Cell division cycle 5-l 99.2 1.3E-11 4.3E-16 92.1 5.8 48 63-110 6-54 (70)
18 1irz_A ARR10-B; helix-turn-hel 99.2 3.5E-11 1.2E-15 90.9 7.9 56 62-117 3-63 (64)
19 1ity_A TRF1; helix-turn-helix, 99.2 3.3E-11 1.1E-15 89.7 7.5 50 63-112 7-59 (69)
20 3sjm_A Telomeric repeat-bindin 99.1 8.6E-11 3E-15 87.5 7.0 46 65-110 10-58 (64)
21 2k9n_A MYB24; R2R3 domain, DNA 99.1 2.2E-10 7.4E-15 91.3 7.8 53 64-116 51-103 (107)
22 2cqq_A RSGI RUH-037, DNAJ homo 99.1 2.5E-10 8.7E-15 87.2 7.8 60 65-127 7-70 (72)
23 2yqk_A Arginine-glutamic acid 99.1 1.4E-10 4.9E-15 85.9 6.0 43 65-107 8-51 (63)
24 3osg_A MYB21; transcription-DN 99.0 2.6E-10 8.8E-15 93.4 6.5 52 63-114 59-110 (126)
25 1gv2_A C-MYB, MYB proto-oncoge 99.0 2.4E-10 8.1E-15 90.1 5.6 47 64-110 54-100 (105)
26 3osg_A MYB21; transcription-DN 99.0 3.4E-10 1.1E-14 92.7 6.6 49 63-111 8-56 (126)
27 2llk_A Cyclin-D-binding MYB-li 99.0 4.2E-10 1.4E-14 86.4 6.5 52 56-108 13-64 (73)
28 3zqc_A MYB3; transcription-DNA 99.0 2.9E-10 1E-14 93.5 5.7 52 63-114 51-102 (131)
29 1wgx_A KIAA1903 protein; MYB D 99.0 6.7E-10 2.3E-14 85.7 6.4 44 67-110 9-56 (73)
30 1gv2_A C-MYB, MYB proto-oncoge 99.0 5.8E-10 2E-14 87.9 5.4 46 65-110 3-49 (105)
31 2crg_A Metastasis associated p 99.0 8.9E-10 3E-14 83.4 6.2 44 64-107 6-50 (70)
32 2k9n_A MYB24; R2R3 domain, DNA 98.9 9.5E-10 3.3E-14 87.6 5.9 45 66-110 1-46 (107)
33 1h8a_C AMV V-MYB, MYB transfor 98.9 8.2E-10 2.8E-14 90.1 4.3 47 64-110 77-123 (128)
34 1h8a_C AMV V-MYB, MYB transfor 98.9 1.5E-09 5.2E-14 88.6 5.8 50 62-111 23-73 (128)
35 3zqc_A MYB3; transcription-DNA 98.9 9.5E-10 3.3E-14 90.4 4.6 46 66-111 2-48 (131)
36 4a69_C Nuclear receptor corepr 98.8 4.8E-09 1.7E-13 83.5 5.8 44 64-107 41-84 (94)
37 2ckx_A NGTRF1, telomere bindin 98.8 1.4E-08 4.8E-13 79.5 6.8 49 67-115 1-54 (83)
38 1h89_C C-MYB, MYB proto-oncoge 98.7 5.2E-09 1.8E-13 88.1 3.9 47 64-110 108-154 (159)
39 1h89_C C-MYB, MYB proto-oncoge 98.7 1.3E-08 4.4E-13 85.7 5.7 49 63-111 55-104 (159)
40 2juh_A Telomere binding protei 98.7 2.9E-08 1E-12 82.8 7.4 58 57-114 8-70 (121)
41 2aje_A Telomere repeat-binding 98.7 2.3E-08 7.9E-13 81.6 6.3 52 62-113 9-65 (105)
42 2roh_A RTBP1, telomere binding 98.7 4.7E-08 1.6E-12 81.7 8.3 56 60-115 25-85 (122)
43 4eef_G F-HB80.4, designed hema 98.7 1.6E-09 5.5E-14 84.1 -0.8 42 67-108 21-66 (74)
44 1x58_A Hypothetical protein 49 98.6 4.8E-08 1.6E-12 73.5 6.1 45 64-108 6-53 (62)
45 1ign_A Protein (RAP1); RAP1,ye 98.3 3.4E-07 1.2E-11 84.4 3.9 50 64-113 6-61 (246)
46 3hm5_A DNA methyltransferase 1 97.4 0.00043 1.5E-08 55.5 7.3 52 66-117 30-86 (93)
47 1ofc_X ISWI protein; nuclear p 97.4 0.0002 6.9E-09 67.6 6.0 49 67-115 111-160 (304)
48 1fex_A TRF2-interacting telome 97.3 0.00038 1.3E-08 51.0 5.1 46 66-111 2-57 (59)
49 2xag_B REST corepressor 1; ami 97.1 6.5E-05 2.2E-09 74.9 0.0 43 65-107 188-230 (482)
50 1ug2_A 2610100B20RIK gene prod 97.1 0.0063 2.2E-07 49.2 10.9 50 67-116 34-86 (95)
51 1ofc_X ISWI protein; nuclear p 96.2 0.0084 2.9E-07 56.7 7.0 53 65-117 211-279 (304)
52 4b4c_A Chromodomain-helicase-D 96.2 0.0083 2.8E-07 51.8 6.3 52 65-116 6-62 (211)
53 2ebi_A DNA binding protein GT- 95.9 0.014 4.9E-07 44.4 5.8 51 65-115 3-67 (86)
54 4iej_A DNA methyltransferase 1 95.6 0.035 1.2E-06 44.6 7.3 52 66-117 30-86 (93)
55 2y9y_A Imitation switch protei 95.6 0.013 4.5E-07 56.9 5.7 49 67-115 124-174 (374)
56 2lr8_A CAsp8-associated protei 94.5 0.0022 7.6E-08 49.3 0.0 44 67-111 15-61 (70)
57 4b4c_A Chromodomain-helicase-D 93.5 0.22 7.4E-06 42.8 7.6 48 65-113 133-195 (211)
58 1ig6_A MRF-2, modulator recogn 92.2 0.17 5.7E-06 40.1 4.7 54 77-130 38-107 (107)
59 2hzd_A Transcriptional enhance 89.0 0.42 1.4E-05 37.6 4.2 47 64-110 4-71 (82)
60 2xb0_X Chromo domain-containin 87.1 1.4 4.7E-05 40.9 7.1 45 66-110 3-52 (270)
61 2xb0_X Chromo domain-containin 85.1 0.83 2.8E-05 42.4 4.6 26 67-92 169-195 (270)
62 1ign_A Protein (RAP1); RAP1,ye 84.5 1.7 6E-05 40.1 6.4 28 87-114 173-200 (246)
63 2y9y_A Imitation switch protei 82.2 4.2 0.00014 39.5 8.3 54 65-118 227-296 (374)
64 2cxy_A BAF250B subunit, HBAF25 75.1 3.5 0.00012 33.5 4.6 30 87-116 74-107 (125)
65 2li6_A SWI/SNF chromatin-remod 62.2 7.8 0.00027 31.0 4.1 29 87-115 72-100 (116)
66 2lm1_A Lysine-specific demethy 59.4 24 0.00084 27.3 6.4 42 74-116 47-100 (107)
67 2jrz_A Histone demethylase jar 57.9 15 0.0005 29.4 5.0 41 74-115 43-95 (117)
68 1kkx_A Transcription regulator 57.9 14 0.00047 30.1 4.9 30 87-116 71-100 (123)
69 2eqy_A RBP2 like, jumonji, at 53.9 22 0.00076 28.6 5.5 30 87-116 65-98 (122)
70 2jxj_A Histone demethylase jar 50.1 18 0.00062 27.6 4.2 29 87-115 59-91 (96)
71 1c20_A DEAD ringer protein; DN 47.7 24 0.00083 28.5 4.8 30 87-116 75-109 (128)
72 3e7l_A Transcriptional regulat 47.2 37 0.0013 23.7 5.2 27 71-97 18-44 (63)
73 1fse_A GERE; helix-turn-helix 46.7 55 0.0019 22.2 5.9 48 66-116 9-56 (74)
74 3c57_A Two component transcrip 45.5 68 0.0023 23.9 6.7 48 67-117 26-73 (95)
75 2o8x_A Probable RNA polymerase 41.2 62 0.0021 21.7 5.5 48 67-116 14-61 (70)
76 2rq5_A Protein jumonji; develo 40.9 28 0.00096 28.4 4.1 30 87-116 65-99 (121)
77 1x3u_A Transcriptional regulat 39.7 56 0.0019 22.7 5.1 46 68-116 16-61 (79)
78 1je8_A Nitrate/nitrite respons 37.3 61 0.0021 23.5 5.2 47 67-116 20-66 (82)
79 1ntc_A Protein (nitrogen regul 37.0 62 0.0021 24.1 5.3 29 69-97 48-76 (91)
80 3ulq_B Transcriptional regulat 36.4 71 0.0024 23.9 5.5 47 66-115 27-73 (90)
81 2kk0_A AT-rich interactive dom 36.3 33 0.0011 28.5 4.0 29 87-115 87-120 (145)
82 3mzy_A RNA polymerase sigma-H 34.5 83 0.0028 23.9 5.8 33 83-116 122-154 (164)
83 3i4p_A Transcriptional regulat 31.3 41 0.0014 27.3 3.7 43 72-119 3-46 (162)
84 1ngr_A P75 low affinity neurot 28.4 43 0.0015 25.4 3.1 29 71-105 12-40 (85)
85 2jt1_A PEFI protein; solution 28.2 85 0.0029 23.4 4.7 47 74-125 6-59 (77)
86 1ku3_A Sigma factor SIGA; heli 27.6 1.3E+02 0.0045 20.8 5.4 47 68-115 10-59 (73)
87 1umq_A Photosynthetic apparatu 27.0 78 0.0027 23.9 4.3 29 69-97 38-66 (81)
88 2rnj_A Response regulator prot 26.8 84 0.0029 22.9 4.4 47 67-116 28-74 (91)
89 1p4w_A RCSB; solution structur 26.6 1.5E+02 0.0051 22.6 6.0 47 67-116 33-79 (99)
90 2yqf_A Ankyrin-1; death domain 22.9 1.4E+02 0.0048 23.1 5.3 35 70-105 14-48 (111)
91 2lc3_A E3 ubiquitin-protein li 22.8 94 0.0032 24.7 4.1 57 63-119 10-85 (88)
92 2dbb_A Putative HTH-type trans 22.3 1.5E+02 0.0051 23.2 5.4 42 72-118 9-51 (151)
93 3hug_A RNA polymerase sigma fa 22.1 1.9E+02 0.0067 20.8 5.7 31 85-116 53-83 (92)
94 2e1c_A Putative HTH-type trans 21.6 1.2E+02 0.0039 25.1 4.8 44 71-119 26-70 (171)
95 1eto_A FIS, factor for inversi 20.6 1.4E+02 0.0048 23.1 4.8 27 71-97 57-83 (98)
96 2cyy_A Putative HTH-type trans 20.6 1.6E+02 0.0056 23.1 5.3 43 72-119 7-50 (151)
No 1
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.67 E-value=4.4e-17 Score=126.25 Aligned_cols=61 Identities=26% Similarity=0.381 Sum_probs=57.0
Q ss_pred CCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHHHHH
Q 021972 51 DPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 111 (304)
Q Consensus 51 d~~kk~rKPytitk~r~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf 111 (304)
.+++|.+++++....+..||+||+++||+||++||++|++||++|++||..||+.||++|+
T Consensus 3 sg~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 3 SGSSGTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLP 63 (79)
T ss_dssp CSSSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSC
T ss_pred CcccCccCCccccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 4678889999999999999999999999999999999999999999999999999998763
No 2
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.63 E-value=9.3e-16 Score=115.42 Aligned_cols=66 Identities=35% Similarity=0.595 Sum_probs=56.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCC
Q 021972 63 TKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAEHLPPPRPKRKAAHP 135 (304)
Q Consensus 63 tk~r~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~g~~~~iP~pr~KRks~h~ 135 (304)
...++.||+||+++|++++++||.+|..||.+|++||..||+.||++|+.+..+.| + .+.+.+||.
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~g----~---~~~~~si~s 71 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCG----L---DKETPNQKT 71 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSC----T---TCCCSCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcC----C---CCCcccccc
Confidence 44678999999999999999999999999999999999999999999999986654 3 244556663
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.7e-15 Score=114.25 Aligned_cols=56 Identities=36% Similarity=0.668 Sum_probs=51.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhC------hhhHHHHhhcCCCCHHHHHHHHHHHHHHHhhcC
Q 021972 63 TKSRESWTEPEHDKFLEALQLFD------RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 118 (304)
Q Consensus 63 tk~r~~WTeEEh~lFLeaLe~yG------rdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~g 118 (304)
...++.||+||+++|+++|++|| ++|.+||++|++||..||+.||++|+.++.+.|
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 34568999999999999999999 799999999999999999999999999887665
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.49 E-value=3.3e-14 Score=103.43 Aligned_cols=48 Identities=23% Similarity=0.527 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-hhhHHHHhhcC-CCCHHHHHHHHHHHHH
Q 021972 65 SRESWTEPEHDKFLEALQLFD-RDWKKIEAFIG-SKTVIQIRSHAQKYFL 112 (304)
Q Consensus 65 ~r~~WTeEEh~lFLeaLe~yG-rdWkkIA~~Vg-TRT~~QVrSHAQKYf~ 112 (304)
.++.||+||+++|++++++|| ++|++||++|+ +||..||+.|+++||+
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHcc
Confidence 457899999999999999999 79999999999 9999999999999985
No 5
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.48 E-value=1.9e-14 Score=131.53 Aligned_cols=67 Identities=25% Similarity=0.453 Sum_probs=62.0
Q ss_pred CCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 021972 50 EDPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (304)
Q Consensus 50 ed~~kk~rKPytitk~r~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k 116 (304)
++...+.|+|+++.+....||+||+++|++||++||+||..||++||+||..||++||.+|..+++.
T Consensus 117 ~~~Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRlnL 183 (235)
T 2iw5_B 117 DGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNI 183 (235)
T ss_dssp TTTTGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTTTH
T ss_pred HhhcccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHhhH
Confidence 5677788999999999999999999999999999999999999999999999999999998777543
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.46 E-value=7.1e-14 Score=101.97 Aligned_cols=50 Identities=28% Similarity=0.463 Sum_probs=46.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhC-hhhHHHHhhcCCCCHHHHHHHHHHHHH
Q 021972 63 TKSRESWTEPEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYFL 112 (304)
Q Consensus 63 tk~r~~WTeEEh~lFLeaLe~yG-rdWkkIA~~VgTRT~~QVrSHAQKYf~ 112 (304)
...+..||.||+++|++++++|| ++|++||++|++||..||+.|+++|+.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 34568999999999999999999 699999999999999999999998864
No 7
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.37 E-value=2.8e-13 Score=134.36 Aligned_cols=67 Identities=25% Similarity=0.453 Sum_probs=60.6
Q ss_pred CCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 021972 50 EDPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (304)
Q Consensus 50 ed~~kk~rKPytitk~r~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k 116 (304)
+.+....|.++..++...+||+||+.+|++||++||+||+.|+++|||||..||++||++|+.+++.
T Consensus 364 ~~g~~~~r~~e~~~~~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr~~l 430 (482)
T 2xag_B 364 DGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNI 430 (482)
T ss_dssp TTTTGGGCCCCCCCCCCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTTTTH
T ss_pred hcccccccCCccccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCh
Confidence 4555667889999999999999999999999999999999999999999999999999998777554
No 8
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.35 E-value=1.3e-12 Score=92.09 Aligned_cols=47 Identities=26% Similarity=0.507 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCh-hhHHHHhhcCCCCHHHHHHHHHHHH
Q 021972 65 SRESWTEPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 111 (304)
Q Consensus 65 ~r~~WTeEEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKYf 111 (304)
+++.||.||+++|++++++||. +|..||.++++||..||+.|+++|+
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998 9999999999999999999998875
No 9
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.31 E-value=2.1e-12 Score=93.56 Aligned_cols=49 Identities=18% Similarity=0.410 Sum_probs=44.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhC-hhhHHHHhhcCCCCHHHHHHHHHHHH
Q 021972 63 TKSRESWTEPEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYF 111 (304)
Q Consensus 63 tk~r~~WTeEEh~lFLeaLe~yG-rdWkkIA~~VgTRT~~QVrSHAQKYf 111 (304)
...++.||.||+++|++++++|| ++|..||.++++||..||+.|+++|+
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHc
Confidence 34678999999999999999999 69999999999999999999998763
No 10
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.30 E-value=7.1e-12 Score=96.12 Aligned_cols=47 Identities=23% Similarity=0.356 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----hhhHHHHhhcCCCCHHHHHHHHHHHH
Q 021972 65 SRESWTEPEHDKFLEALQLFD----RDWKKIEAFIGSKTVIQIRSHAQKYF 111 (304)
Q Consensus 65 ~r~~WTeEEh~lFLeaLe~yG----rdWkkIA~~VgTRT~~QVrSHAQKYf 111 (304)
.++.||.||+++|++||++|| .+|.+||++|++||..||+.|++.+.
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 668999999999999999999 68999999999999999999988663
No 11
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.30 E-value=2.5e-12 Score=90.69 Aligned_cols=47 Identities=17% Similarity=0.405 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCh-hhHHHHhhcCCCCHHHHHHHHHHHH
Q 021972 65 SRESWTEPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 111 (304)
Q Consensus 65 ~r~~WTeEEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKYf 111 (304)
.++.||.||+++|++++++||. +|..||.++++||..||+.|+++|+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 4689999999999999999996 8999999999999999999998774
No 12
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=4.5e-12 Score=93.10 Aligned_cols=44 Identities=16% Similarity=0.297 Sum_probs=41.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHH
Q 021972 64 KSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHA 107 (304)
Q Consensus 64 k~r~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHA 107 (304)
+....||+||+++|++|+.+||++|..||.+|++||..||+.|+
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYY 53 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH
Confidence 35579999999999999999999999999999999999999874
No 13
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.1e-11 Score=91.43 Aligned_cols=55 Identities=22% Similarity=0.461 Sum_probs=48.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHHHHHHHHhhcC
Q 021972 63 TKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 118 (304)
Q Consensus 63 tk~r~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~g 118 (304)
...++.||.||+++|+++++.||.+|.+||.++ +||..||+.|+++|+....+.+
T Consensus 6 ~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~-gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 6 SGKKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHCTTCHHHHHHHH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCHHHHhccc-CcCHHHHHHHHHHHhChHhcCC
Confidence 346789999999999999999999999999955 5999999999999988876544
No 14
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.90 E-value=5.7e-13 Score=104.55 Aligned_cols=55 Identities=27% Similarity=0.396 Sum_probs=50.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHHHHHHHHhhc
Q 021972 63 TKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 117 (304)
Q Consensus 63 tk~r~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~ 117 (304)
...++.||+||+++|++++++||.+|..||.+|++||..||+.||..|+.++...
T Consensus 13 ~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l~ 67 (89)
T 2ltp_A 13 NLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLD 67 (89)
Confidence 3456899999999999999999999999999999999999999999998776543
No 15
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.24 E-value=1.2e-11 Score=98.79 Aligned_cols=63 Identities=17% Similarity=0.432 Sum_probs=51.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC----hhhHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 021972 66 RESWTEPEHDKFLEALQLFD----RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAEHLPPPRPK 129 (304)
Q Consensus 66 r~~WTeEEh~lFLeaLe~yG----rdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~g~~~~iP~pr~K 129 (304)
.+.||.||+++|++||++|| .+|.+||++|++||..||+.||++++.++.... ...+|.|...
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~ie-sg~vp~P~y~ 74 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIE-SGKVPFPNYR 74 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHH-HSSCCC----
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh-cCCCCCCCCC
Confidence 46899999999999999997 589999999999999999999999988875432 3457777654
No 16
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.22 E-value=2e-11 Score=86.73 Aligned_cols=46 Identities=15% Similarity=0.385 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC-hhhHHHHhhcC--CCCHHHHHHHHHHHH
Q 021972 66 RESWTEPEHDKFLEALQLFD-RDWKKIEAFIG--SKTVIQIRSHAQKYF 111 (304)
Q Consensus 66 r~~WTeEEh~lFLeaLe~yG-rdWkkIA~~Vg--TRT~~QVrSHAQKYf 111 (304)
++.||+||+++|+++++.|| ++|..|+.+++ +||..||+.++.+|.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 57999999999999999999 69999999999 999999999998774
No 17
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.3e-11 Score=92.06 Aligned_cols=48 Identities=15% Similarity=0.409 Sum_probs=44.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhC-hhhHHHHhhcCCCCHHHHHHHHHHH
Q 021972 63 TKSRESWTEPEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKY 110 (304)
Q Consensus 63 tk~r~~WTeEEh~lFLeaLe~yG-rdWkkIA~~VgTRT~~QVrSHAQKY 110 (304)
...++.||.||+++|++++++|| .+|..||.+|++||..||+.|+++|
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEW 54 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 34668999999999999999999 7999999999999999999998876
No 18
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.21 E-value=3.5e-11 Score=90.90 Aligned_cols=56 Identities=32% Similarity=0.426 Sum_probs=49.8
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhChh---hHHHHhhcC--CCCHHHHHHHHHHHHHHHhhc
Q 021972 62 ITKSRESWTEPEHDKFLEALQLFDRD---WKKIEAFIG--SKTVIQIRSHAQKYFLKVQKN 117 (304)
Q Consensus 62 itk~r~~WTeEEh~lFLeaLe~yGrd---WkkIA~~Vg--TRT~~QVrSHAQKYf~kl~k~ 117 (304)
..|.+..||+|+|++|++|++++|.+ |++|-++++ +.|..||+||.|||+.++++.
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 45678899999999999999999964 899998876 679999999999999999763
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.20 E-value=3.3e-11 Score=89.73 Aligned_cols=50 Identities=14% Similarity=0.363 Sum_probs=45.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhC-hhhHHHHhhcC--CCCHHHHHHHHHHHHH
Q 021972 63 TKSRESWTEPEHDKFLEALQLFD-RDWKKIEAFIG--SKTVIQIRSHAQKYFL 112 (304)
Q Consensus 63 tk~r~~WTeEEh~lFLeaLe~yG-rdWkkIA~~Vg--TRT~~QVrSHAQKYf~ 112 (304)
.+.++.||+||+++|++++++|| ++|..||.+++ +||..||+.++.+|+.
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 45678999999999999999999 69999999999 9999999999887754
No 20
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.14 E-value=8.6e-11 Score=87.45 Aligned_cols=46 Identities=17% Similarity=0.396 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-hhhHHHHhhcC--CCCHHHHHHHHHHH
Q 021972 65 SRESWTEPEHDKFLEALQLFD-RDWKKIEAFIG--SKTVIQIRSHAQKY 110 (304)
Q Consensus 65 ~r~~WTeEEh~lFLeaLe~yG-rdWkkIA~~Vg--TRT~~QVrSHAQKY 110 (304)
.+..||+||+++|++++++|| ++|.+|+++++ +||..||+.++.++
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 457899999999999999999 59999999876 99999999998765
No 21
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.09 E-value=2.2e-10 Score=91.31 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=48.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 021972 64 KSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (304)
Q Consensus 64 k~r~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k 116 (304)
..++.||+||+.+|++++++||.+|..||.+|++||..||+.|+..+..++.+
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred ccccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhHHH
Confidence 45789999999999999999999999999999999999999999988777654
No 22
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.09 E-value=2.5e-10 Score=87.18 Aligned_cols=60 Identities=18% Similarity=0.392 Sum_probs=48.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----hhhHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 021972 65 SRESWTEPEHDKFLEALQLFD----RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAEHLPPPR 127 (304)
Q Consensus 65 ~r~~WTeEEh~lFLeaLe~yG----rdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~g~~~~iP~pr 127 (304)
....||.||+++|.+||.+|+ .+|.+||+++ .||..||+.||+++.... ......+|.|+
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~--~~~~G~vp~P~ 70 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV--TCSPGMVSGPS 70 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC--CCCSCCCSCSC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc--CccCCCCCCCC
Confidence 346899999999999999998 4799999999 599999999998775442 22355677664
No 23
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1.4e-10 Score=85.93 Aligned_cols=43 Identities=19% Similarity=0.465 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhChhhHHHHh-hcCCCCHHHHHHHH
Q 021972 65 SRESWTEPEHDKFLEALQLFDRDWKKIEA-FIGSKTVIQIRSHA 107 (304)
Q Consensus 65 ~r~~WTeEEh~lFLeaLe~yGrdWkkIA~-~VgTRT~~QVrSHA 107 (304)
....||+||+++|++||.+||+||..|+. +|++||..||..|+
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFY 51 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHH
Confidence 45799999999999999999999999998 69999999999874
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.04 E-value=2.6e-10 Score=93.38 Aligned_cols=52 Identities=25% Similarity=0.451 Sum_probs=46.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 021972 63 TKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 114 (304)
Q Consensus 63 tk~r~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl 114 (304)
...++.||+||+++|++++++||.+|..||.+|++||..||+.|+..+..++
T Consensus 59 ~~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 59 SISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp TSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred ccccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 3456899999999999999999999999999999999999999987665554
No 25
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.03 E-value=2.4e-10 Score=90.12 Aligned_cols=47 Identities=23% Similarity=0.424 Sum_probs=44.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHHHH
Q 021972 64 KSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKY 110 (304)
Q Consensus 64 k~r~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKY 110 (304)
..++.||+||+.+|++++++||.+|..||.+|++||..||+.|+..+
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999998755
No 26
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.02 E-value=3.4e-10 Score=92.71 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=45.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHHHHH
Q 021972 63 TKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 111 (304)
Q Consensus 63 tk~r~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf 111 (304)
...++.||+||+++|++++++||.+|+.||+++++||..||+.|+.+|+
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 4467899999999999999999999999999999999999999998774
No 27
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.02 E-value=4.2e-10 Score=86.36 Aligned_cols=52 Identities=15% Similarity=0.170 Sum_probs=43.6
Q ss_pred CCCCcccccCCCCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHH
Q 021972 56 IRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQ 108 (304)
Q Consensus 56 ~rKPytitk~r~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQ 108 (304)
...-+.+...++.||+||++++++++++||.+|..||.++ +||..||+.++.
T Consensus 13 ~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 13 NLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCR 64 (73)
T ss_dssp ------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHH
T ss_pred eeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHH
Confidence 4555666778899999999999999999999999999999 999999999875
No 28
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.01 E-value=2.9e-10 Score=93.45 Aligned_cols=52 Identities=17% Similarity=0.324 Sum_probs=47.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 021972 63 TKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 114 (304)
Q Consensus 63 tk~r~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl 114 (304)
...++.||.||+.+|+++++.||.+|..||.++++||..||+.|+..++.+.
T Consensus 51 ~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 51 AVVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGGG
T ss_pred cccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999999999999998876553
No 29
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.98 E-value=6.7e-10 Score=85.69 Aligned_cols=44 Identities=20% Similarity=0.403 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHHhCh----hhHHHHhhcCCCCHHHHHHHHHHH
Q 021972 67 ESWTEPEHDKFLEALQLFDR----DWKKIEAFIGSKTVIQIRSHAQKY 110 (304)
Q Consensus 67 ~~WTeEEh~lFLeaLe~yGr----dWkkIA~~VgTRT~~QVrSHAQKY 110 (304)
..||.+|+++|++||..|++ +|.+||++||+||..||+.||+..
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 57999999999999999995 799999999999999999997643
No 30
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.96 E-value=5.8e-10 Score=87.90 Aligned_cols=46 Identities=17% Similarity=0.385 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCh-hhHHHHhhcCCCCHHHHHHHHHHH
Q 021972 65 SRESWTEPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKY 110 (304)
Q Consensus 65 ~r~~WTeEEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKY 110 (304)
.++.||+||+++|+++++.||. +|..||.++++||..||+.|+++|
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 49 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhc
Confidence 4689999999999999999996 899999999999999999998876
No 31
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.96 E-value=8.9e-10 Score=83.37 Aligned_cols=44 Identities=27% Similarity=0.456 Sum_probs=40.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHHh-hcCCCCHHHHHHHH
Q 021972 64 KSRESWTEPEHDKFLEALQLFDRDWKKIEA-FIGSKTVIQIRSHA 107 (304)
Q Consensus 64 k~r~~WTeEEh~lFLeaLe~yGrdWkkIA~-~VgTRT~~QVrSHA 107 (304)
.....||+||+.+|++||.+||+||..|+. +|++||..||..|+
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYY 50 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHH
Confidence 355799999999999999999999999998 79999999999985
No 32
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.94 E-value=9.5e-10 Score=87.57 Aligned_cols=45 Identities=22% Similarity=0.403 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCh-hhHHHHhhcCCCCHHHHHHHHHHH
Q 021972 66 RESWTEPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKY 110 (304)
Q Consensus 66 r~~WTeEEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKY 110 (304)
++.||.||+++|+++++.||. +|..||.+|++||..||+.|+.+|
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNY 46 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHH
Confidence 368999999999999999996 999999999999999999998876
No 33
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.90 E-value=8.2e-10 Score=90.14 Aligned_cols=47 Identities=21% Similarity=0.417 Sum_probs=43.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHHHH
Q 021972 64 KSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKY 110 (304)
Q Consensus 64 k~r~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKY 110 (304)
..++.||+||+++|++++++||.+|..||.+|++||..||+.|+..+
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999998644
No 34
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.90 E-value=1.5e-09 Score=88.55 Aligned_cols=50 Identities=18% Similarity=0.387 Sum_probs=45.2
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCh-hhHHHHhhcCCCCHHHHHHHHHHHH
Q 021972 62 ITKSRESWTEPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 111 (304)
Q Consensus 62 itk~r~~WTeEEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKYf 111 (304)
+...++.||+||+++|+++++.||. +|..||.++++||..||+.|+.+|+
T Consensus 23 p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 23 PELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp TTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 3456789999999999999999995 8999999999999999999988763
No 35
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.89 E-value=9.5e-10 Score=90.40 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC-hhhHHHHhhcCCCCHHHHHHHHHHHH
Q 021972 66 RESWTEPEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYF 111 (304)
Q Consensus 66 r~~WTeEEh~lFLeaLe~yG-rdWkkIA~~VgTRT~~QVrSHAQKYf 111 (304)
++.||.||+++|+++++.|| ++|..||.+|++||..||+.|+++|+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 47899999999999999999 69999999999999999999998774
No 36
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.81 E-value=4.8e-09 Score=83.45 Aligned_cols=44 Identities=23% Similarity=0.385 Sum_probs=41.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHH
Q 021972 64 KSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHA 107 (304)
Q Consensus 64 k~r~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHA 107 (304)
+....||+||+++|.+++.+||++|.+|+++|++||..||..|+
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYY 84 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHH
Confidence 35689999999999999999999999999999999999999985
No 37
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.76 E-value=1.4e-08 Score=79.47 Aligned_cols=49 Identities=10% Similarity=0.337 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHHhCh-hhHHHHhh----cCCCCHHHHHHHHHHHHHHHh
Q 021972 67 ESWTEPEHDKFLEALQLFDR-DWKKIEAF----IGSKTVIQIRSHAQKYFLKVQ 115 (304)
Q Consensus 67 ~~WTeEEh~lFLeaLe~yGr-dWkkIA~~----VgTRT~~QVrSHAQKYf~kl~ 115 (304)
.+||+||++.|++|+++||. +|++|+.. +.+||..||+.++.+++.+..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 47999999999999999997 99999974 789999999999998876543
No 38
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.73 E-value=5.2e-09 Score=88.07 Aligned_cols=47 Identities=23% Similarity=0.424 Sum_probs=43.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHHHH
Q 021972 64 KSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKY 110 (304)
Q Consensus 64 k~r~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKY 110 (304)
..++.||+||+.+|++++++||.+|..||.+|++||..||+.|+..+
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred ccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999997643
No 39
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.71 E-value=1.3e-08 Score=85.66 Aligned_cols=49 Identities=16% Similarity=0.361 Sum_probs=44.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCh-hhHHHHhhcCCCCHHHHHHHHHHHH
Q 021972 63 TKSRESWTEPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 111 (304)
Q Consensus 63 tk~r~~WTeEEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKYf 111 (304)
...++.||+||+.+|+++++.||. +|..||.++++||..||+.|+.+|+
T Consensus 55 ~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 55 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred CcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 456789999999999999999995 8999999999999999999988763
No 40
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.70 E-value=2.9e-08 Score=82.85 Aligned_cols=58 Identities=12% Similarity=0.338 Sum_probs=50.1
Q ss_pred CCCcccccCCCCCCHHHHHHHHHHHHHhCh-hhHHHHhhc----CCCCHHHHHHHHHHHHHHH
Q 021972 57 RKPYTITKSRESWTEPEHDKFLEALQLFDR-DWKKIEAFI----GSKTVIQIRSHAQKYFLKV 114 (304)
Q Consensus 57 rKPytitk~r~~WTeEEh~lFLeaLe~yGr-dWkkIA~~V----gTRT~~QVrSHAQKYf~kl 114 (304)
|.+....+.++.||.||++.+++|+++||. +|..|+.+. ..||..||+.++.++..+.
T Consensus 8 ~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 8 RSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred CccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 344556678899999999999999999997 999999874 7999999999999887654
No 41
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.69 E-value=2.3e-08 Score=81.58 Aligned_cols=52 Identities=10% Similarity=0.337 Sum_probs=45.4
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCh-hhHHHHhhc----CCCCHHHHHHHHHHHHHH
Q 021972 62 ITKSRESWTEPEHDKFLEALQLFDR-DWKKIEAFI----GSKTVIQIRSHAQKYFLK 113 (304)
Q Consensus 62 itk~r~~WTeEEh~lFLeaLe~yGr-dWkkIA~~V----gTRT~~QVrSHAQKYf~k 113 (304)
..+.+++||+||++.|++|+++||. +|+.|+... ..||..||+.++.+++.+
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 4456789999999999999999997 999999754 799999999998877544
No 42
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.68 E-value=4.7e-08 Score=81.70 Aligned_cols=56 Identities=13% Similarity=0.318 Sum_probs=48.1
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHhCh-hhHHHHhhc----CCCCHHHHHHHHHHHHHHHh
Q 021972 60 YTITKSRESWTEPEHDKFLEALQLFDR-DWKKIEAFI----GSKTVIQIRSHAQKYFLKVQ 115 (304)
Q Consensus 60 ytitk~r~~WTeEEh~lFLeaLe~yGr-dWkkIA~~V----gTRT~~QVrSHAQKYf~kl~ 115 (304)
....+.++.||.||++.+++|+++||. +|+.|+.+. ..||..||+.++.+++..-.
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 344557789999999999999999996 999999764 79999999999988876543
No 43
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.68 E-value=1.6e-09 Score=84.10 Aligned_cols=42 Identities=24% Similarity=0.552 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHhCh----hhHHHHhhcCCCCHHHHHHHHH
Q 021972 67 ESWTEPEHDKFLEALQLFDR----DWKKIEAFIGSKTVIQIRSHAQ 108 (304)
Q Consensus 67 ~~WTeEEh~lFLeaLe~yGr----dWkkIA~~VgTRT~~QVrSHAQ 108 (304)
..||.||.++|..||..|++ +|.+||+.||+||..||+.|||
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 57999999999999999996 7999999999999999999987
No 44
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.63 E-value=4.8e-08 Score=73.54 Aligned_cols=45 Identities=13% Similarity=0.400 Sum_probs=41.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHH---hhcCCCCHHHHHHHHH
Q 021972 64 KSRESWTEPEHDKFLEALQLFDRDWKKIE---AFIGSKTVIQIRSHAQ 108 (304)
Q Consensus 64 k~r~~WTeEEh~lFLeaLe~yGrdWkkIA---~~VgTRT~~QVrSHAQ 108 (304)
..+..||+||.+.+++|+++||+.|++|+ .|+..||...++..+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r 53 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYH 53 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHH
Confidence 46789999999999999999999999999 5888999999998654
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.29 E-value=3.4e-07 Score=84.40 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=44.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChh------hHHHHhhcCCCCHHHHHHHHHHHHHH
Q 021972 64 KSRESWTEPEHDKFLEALQLFDRD------WKKIEAFIGSKTVIQIRSHAQKYFLK 113 (304)
Q Consensus 64 k~r~~WTeEEh~lFLeaLe~yGrd------WkkIA~~VgTRT~~QVrSHAQKYf~k 113 (304)
..+..||+||++++|+++++||.. |..||.++++||..|||+|+..|+.+
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 356799999999999999999964 99999999999999999999888544
No 46
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.39 E-value=0.00043 Score=55.49 Aligned_cols=52 Identities=17% Similarity=0.329 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHHHhChhhHHHHhhc-----CCCCHHHHHHHHHHHHHHHhhc
Q 021972 66 RESWTEPEHDKFLEALQLFDRDWKKIEAFI-----GSKTVIQIRSHAQKYFLKVQKN 117 (304)
Q Consensus 66 r~~WTeEEh~lFLeaLe~yGrdWkkIA~~V-----gTRT~~QVrSHAQKYf~kl~k~ 117 (304)
...||.||.+.+++..++||.+|-.|+... +.||.+++++++-..-.++.+.
T Consensus 30 ~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~ 86 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999999999776 5799999999976666665543
No 47
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.36 E-value=0.0002 Score=67.64 Aligned_cols=49 Identities=18% Similarity=0.397 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHHHHHhCh-hhHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 021972 67 ESWTEPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 115 (304)
Q Consensus 67 ~~WTeEEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKYf~kl~ 115 (304)
..||..+-..|+.|+++||+ +|..||+.|++||..+|+.|++-|+.+.+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ 160 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCT 160 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGG
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHH
Confidence 47999999999999999998 99999999999999999999998877764
No 48
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.26 E-value=0.00038 Score=51.04 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHHh--------C-hhhHHHHh-hcCCCCHHHHHHHHHHHH
Q 021972 66 RESWTEPEHDKFLEALQLF--------D-RDWKKIEA-FIGSKTVIQIRSHAQKYF 111 (304)
Q Consensus 66 r~~WTeEEh~lFLeaLe~y--------G-rdWkkIA~-~VgTRT~~QVrSHAQKYf 111 (304)
|..||+||+..+++-|..| | +-|+++++ .+..+|-.++|.|+.|++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999 5 38999999 899999999999988763
No 49
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.14 E-value=6.5e-05 Score=74.88 Aligned_cols=43 Identities=14% Similarity=0.377 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHH
Q 021972 65 SRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHA 107 (304)
Q Consensus 65 ~r~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHA 107 (304)
....||++|+.+|.+||.+||++|..|+.+|++||..+|..||
T Consensus 188 ~~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yY 230 (482)
T 2xag_B 188 FPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFY 230 (482)
T ss_dssp -------------------------------------------
T ss_pred cccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHh
Confidence 3468999999999999999999999999999999999999885
No 50
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.07 E-value=0.0063 Score=49.16 Aligned_cols=50 Identities=16% Similarity=0.241 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHHHhCh---hhHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 021972 67 ESWTEPEHDKFLEALQLFDR---DWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (304)
Q Consensus 67 ~~WTeEEh~lFLeaLe~yGr---dWkkIA~~VgTRT~~QVrSHAQKYf~kl~k 116 (304)
..||.||++-+|.+.++-|. -|..||.-++.|++.||+.++|....-+++
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 58999999999999999995 899999999999999999999876554544
No 51
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.20 E-value=0.0084 Score=56.68 Aligned_cols=53 Identities=15% Similarity=0.306 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCh----hhHHHH------------hhcCCCCHHHHHHHHHHHHHHHhhc
Q 021972 65 SRESWTEPEHDKFLEALQLFDR----DWKKIE------------AFIGSKTVIQIRSHAQKYFLKVQKN 117 (304)
Q Consensus 65 ~r~~WTeEEh~lFLeaLe~yGr----dWkkIA------------~~VgTRT~~QVrSHAQKYf~kl~k~ 117 (304)
++..||++||+.||-+|.+||. +|..|. -|+.+||+.+|..|++-...-+.+.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~iekE 279 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIERE 279 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999995 899996 3888999999999998766656553
No 52
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.16 E-value=0.0083 Score=51.80 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---hhhHHHHhh--cCCCCHHHHHHHHHHHHHHHhh
Q 021972 65 SRESWTEPEHDKFLEALQLFD---RDWKKIEAF--IGSKTVIQIRSHAQKYFLKVQK 116 (304)
Q Consensus 65 ~r~~WTeEEh~lFLeaLe~yG---rdWkkIA~~--VgTRT~~QVrSHAQKYf~kl~k 116 (304)
....||+.|-..|+.|+.+|| .+|..|++. +..||..+|+.+++.+..+..+
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~ 62 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIK 62 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 346999999999999999999 389999865 5689999999999888776544
No 53
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=95.90 E-value=0.014 Score=44.37 Aligned_cols=51 Identities=12% Similarity=0.267 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----------hhhHHHHhhcC----CCCHHHHHHHHHHHHHHHh
Q 021972 65 SRESWTEPEHDKFLEALQLFD----------RDWKKIEAFIG----SKTVIQIRSHAQKYFLKVQ 115 (304)
Q Consensus 65 ~r~~WTeEEh~lFLeaLe~yG----------rdWkkIA~~Vg----TRT~~QVrSHAQKYf~kl~ 115 (304)
.+..||++|..+||++..... ..|..||+.+. .||+.||+.-+......-.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk 67 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFK 67 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 457999999999999996532 17999997664 7999999998776544443
No 54
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.64 E-value=0.035 Score=44.62 Aligned_cols=52 Identities=17% Similarity=0.329 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHHhChhhHHHHhhc-----CCCCHHHHHHHHHHHHHHHhhc
Q 021972 66 RESWTEPEHDKFLEALQLFDRDWKKIEAFI-----GSKTVIQIRSHAQKYFLKVQKN 117 (304)
Q Consensus 66 r~~WTeEEh~lFLeaLe~yGrdWkkIA~~V-----gTRT~~QVrSHAQKYf~kl~k~ 117 (304)
...||.||.+.+++..+.|+-+|--|+... +.||.++++.++=....++.+.
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999543 3799999999987666666543
No 55
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.62 E-value=0.013 Score=56.88 Aligned_cols=49 Identities=20% Similarity=0.458 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHHhCh-hhHHHHhhcC-CCCHHHHHHHHHHHHHHHh
Q 021972 67 ESWTEPEHDKFLEALQLFDR-DWKKIEAFIG-SKTVIQIRSHAQKYFLKVQ 115 (304)
Q Consensus 67 ~~WTeEEh~lFLeaLe~yGr-dWkkIA~~Vg-TRT~~QVrSHAQKYf~kl~ 115 (304)
..||..+=..|+.|+++||+ +-..||+.|+ +||..+|+.+++-|+.+.+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~ 174 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIE 174 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCS
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhh
Confidence 47999999999999999998 7999999998 9999999999988776653
No 56
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.52 E-value=0.0022 Score=49.29 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHhCh---hhHHHHhhcCCCCHHHHHHHHHHHH
Q 021972 67 ESWTEPEHDKFLEALQLFDR---DWKKIEAFIGSKTVIQIRSHAQKYF 111 (304)
Q Consensus 67 ~~WTeEEh~lFLeaLe~yGr---dWkkIA~~VgTRT~~QVrSHAQKYf 111 (304)
-.||.||++-+|.+.++-|. -|..||.-+ .||+.||..++|...
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLM 61 (70)
Confidence 48999999999999999996 899999888 799999999987653
No 57
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.46 E-value=0.22 Score=42.85 Aligned_cols=48 Identities=17% Similarity=0.380 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-hhhHHHHh--h------------cCCCCHHHHHHHHHHHHHH
Q 021972 65 SRESWTEPEHDKFLEALQLFD-RDWKKIEA--F------------IGSKTVIQIRSHAQKYFLK 113 (304)
Q Consensus 65 ~r~~WTeEEh~lFLeaLe~yG-rdWkkIA~--~------------VgTRT~~QVrSHAQKYf~k 113 (304)
....||++|+..||.|+.+|| ++|.+|-. - ..+.+..++..++. |.++
T Consensus 133 ~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~-~Ll~ 195 (211)
T 4b4c_A 133 FDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRAD-YLIK 195 (211)
T ss_dssp SSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHH-HHHH
T ss_pred CCCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHH-HHHH
Confidence 345799999999999999999 69999963 1 12456778888886 4444
No 58
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=92.20 E-value=0.17 Score=40.13 Aligned_cols=54 Identities=24% Similarity=0.506 Sum_probs=37.3
Q ss_pred HHHHHHHhCh--------hhHHHHhhcCC-----CCHHHHHHHHHHH---HHHHhhcCCCCCCCCCCCCC
Q 021972 77 FLEALQLFDR--------DWKKIEAFIGS-----KTVIQIRSHAQKY---FLKVQKNGTAEHLPPPRPKR 130 (304)
Q Consensus 77 FLeaLe~yGr--------dWkkIA~~VgT-----RT~~QVrSHAQKY---f~kl~k~g~~~~iP~pr~KR 130 (304)
|..++...|+ .|++|++-+|- ....+++.||++| |.+..+......+|+.+||+
T Consensus 38 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~~~~~~~p~~~~~~ 107 (107)
T 1ig6_A 38 MFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKGEEDKPLPPIKPRK 107 (107)
T ss_dssp HHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTHHHHHHHTSSSSCTTCSCC
T ss_pred HHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence 3445666662 79999988872 2347899999999 34444455567788888764
No 59
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=89.04 E-value=0.42 Score=37.61 Aligned_cols=47 Identities=26% Similarity=0.429 Sum_probs=35.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCh---h-h------------HHHHhhc-----CCCCHHHHHHHHHHH
Q 021972 64 KSRESWTEPEHDKFLEALQLFDR---D-W------------KKIEAFI-----GSKTVIQIRSHAQKY 110 (304)
Q Consensus 64 k~r~~WTeEEh~lFLeaLe~yGr---d-W------------kkIA~~V-----gTRT~~QVrSHAQKY 110 (304)
+..+.|.++=+..|+|||+.|-. . + .-|++|| ..||..||-||-|-.
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvl 71 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVL 71 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHH
Confidence 34579999999999999999852 1 1 2245555 389999999999843
No 60
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=87.07 E-value=1.4 Score=40.94 Aligned_cols=45 Identities=13% Similarity=0.081 Sum_probs=37.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCh---hhHHHH--hhcCCCCHHHHHHHHHHH
Q 021972 66 RESWTEPEHDKFLEALQLFDR---DWKKIE--AFIGSKTVIQIRSHAQKY 110 (304)
Q Consensus 66 r~~WTeEEh~lFLeaLe~yGr---dWkkIA--~~VgTRT~~QVrSHAQKY 110 (304)
.+.||+.|-++|+.++.+||. +|..|. .-+..|+...|+.-++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~l 52 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEM 52 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 468999999999999999994 899997 456688988877766544
No 61
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=85.14 E-value=0.83 Score=42.38 Aligned_cols=26 Identities=27% Similarity=0.695 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHHHHHHHhC-hhhHHHH
Q 021972 67 ESWTEPEHDKFLEALQLFD-RDWKKIE 92 (304)
Q Consensus 67 ~~WTeEEh~lFLeaLe~yG-rdWkkIA 92 (304)
-.|+.+|+..||.||.+|| +.|.+|.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir 195 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIR 195 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHh
Confidence 4699999999999999999 5999997
No 62
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=84.46 E-value=1.7 Score=40.12 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=24.8
Q ss_pred hhHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 021972 87 DWKKIEAFIGSKTVIQIRSHAQKYFLKV 114 (304)
Q Consensus 87 dWkkIA~~VgTRT~~QVrSHAQKYf~kl 114 (304)
-|++||++.+.+|...+|.++.|+..+.
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999998865543
No 63
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=82.20 E-value=4.2 Score=39.55 Aligned_cols=54 Identities=13% Similarity=0.257 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCh----hhHHHHh------------hcCCCCHHHHHHHHHHHHHHHhhcC
Q 021972 65 SRESWTEPEHDKFLEALQLFDR----DWKKIEA------------FIGSKTVIQIRSHAQKYFLKVQKNG 118 (304)
Q Consensus 65 ~r~~WTeEEh~lFLeaLe~yGr----dWkkIA~------------~VgTRT~~QVrSHAQKYf~kl~k~g 118 (304)
.+..||++|++.+|-+|.+||- .|.+|-. |+.+||+.+|.-|+.-...-+.+..
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~IeKE~ 296 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLEKEF 296 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 3458999999999999999994 6999932 3779999999999986666666643
No 64
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=75.11 E-value=3.5 Score=33.48 Aligned_cols=30 Identities=10% Similarity=0.397 Sum_probs=23.2
Q ss_pred hhHHHHhhcCCCC----HHHHHHHHHHHHHHHhh
Q 021972 87 DWKKIEAFIGSKT----VIQIRSHAQKYFLKVQK 116 (304)
Q Consensus 87 dWkkIA~~VgTRT----~~QVrSHAQKYf~kl~k 116 (304)
.|++|++-+|--+ ..+++.||++|+....+
T Consensus 74 ~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~ 107 (125)
T 2cxy_A 74 KWRELATNLNVGTSSSAASSLKKQYIQYLFAFEC 107 (125)
T ss_dssp CHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHH
T ss_pred cHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 7999998887443 57999999999665444
No 65
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=62.20 E-value=7.8 Score=30.97 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=24.1
Q ss_pred hhHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 021972 87 DWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 115 (304)
Q Consensus 87 dWkkIA~~VgTRT~~QVrSHAQKYf~kl~ 115 (304)
.|++|++-+|-....+++.||++|.....
T Consensus 72 ~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE 100 (116)
T 2li6_A 72 QWSMVAQRLQISDYQQLESIYFRILLPYE 100 (116)
T ss_dssp CHHHHHHHHTSCCTTHHHHHHHHHHSHHH
T ss_pred cHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 79999998886668899999999965543
No 66
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=59.39 E-value=24 Score=27.35 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhC--------hhhHHHHhhcCCCC----HHHHHHHHHHHHHHHhh
Q 021972 74 HDKFLEALQLFD--------RDWKKIEAFIGSKT----VIQIRSHAQKYFLKVQK 116 (304)
Q Consensus 74 h~lFLeaLe~yG--------rdWkkIA~~VgTRT----~~QVrSHAQKYf~kl~k 116 (304)
+.+|.+ +...| +.|++|++-+|--. ..+++.|+++|......
T Consensus 47 ~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~ 100 (107)
T 2lm1_A 47 YTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPFEV 100 (107)
T ss_dssp HHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 455555 45555 37999998887433 57999999999776554
No 67
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=57.87 E-value=15 Score=29.44 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhC--------hhhHHHHhhcCCCC----HHHHHHHHHHHHHHHh
Q 021972 74 HDKFLEALQLFD--------RDWKKIEAFIGSKT----VIQIRSHAQKYFLKVQ 115 (304)
Q Consensus 74 h~lFLeaLe~yG--------rdWkkIA~~VgTRT----~~QVrSHAQKYf~kl~ 115 (304)
+.+|. ++...| +.|++|++-+|-.. ..+++.||++|.....
T Consensus 43 ~~Ly~-~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE 95 (117)
T 2jrz_A 43 YSLSK-IVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYE 95 (117)
T ss_dssp HHHHH-HHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHH
T ss_pred HHHHH-HHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 34444 455666 37999998887433 6799999999965544
No 68
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=57.87 E-value=14 Score=30.13 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=26.2
Q ss_pred hhHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 021972 87 DWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (304)
Q Consensus 87 dWkkIA~~VgTRT~~QVrSHAQKYf~kl~k 116 (304)
.|++|++-+|-....+++.||+||+...+.
T Consensus 71 ~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 71 QWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 799999988866699999999999877665
No 69
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=53.90 E-value=22 Score=28.63 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=23.1
Q ss_pred hhHHHHhhcCCCC----HHHHHHHHHHHHHHHhh
Q 021972 87 DWKKIEAFIGSKT----VIQIRSHAQKYFLKVQK 116 (304)
Q Consensus 87 dWkkIA~~VgTRT----~~QVrSHAQKYf~kl~k 116 (304)
.|++|++-+|-.. ..++|.|+++|......
T Consensus 65 ~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~ 98 (122)
T 2eqy_A 65 KWTKIATKMGFAPGKAVGSHIRGHYERILNPYNL 98 (122)
T ss_dssp THHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHH
T ss_pred cHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 7999998887432 46999999999666544
No 70
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=50.05 E-value=18 Score=27.57 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=22.3
Q ss_pred hhHHHHhhcCCC----CHHHHHHHHHHHHHHHh
Q 021972 87 DWKKIEAFIGSK----TVIQIRSHAQKYFLKVQ 115 (304)
Q Consensus 87 dWkkIA~~VgTR----T~~QVrSHAQKYf~kl~ 115 (304)
.|++|++.+|-- ...+++.|+++|+...+
T Consensus 59 ~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~yE 91 (96)
T 2jxj_A 59 KWSKVGSRLGYLPGKGTGSLLKSHYERILYPYE 91 (96)
T ss_dssp THHHHHHHHTCCSCSCHHHHHHHHHTTTTHHHH
T ss_pred cHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 799999888732 26799999999866544
No 71
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=47.71 E-value=24 Score=28.47 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=23.1
Q ss_pred hhHHHHhhcCC-----CCHHHHHHHHHHHHHHHhh
Q 021972 87 DWKKIEAFIGS-----KTVIQIRSHAQKYFLKVQK 116 (304)
Q Consensus 87 dWkkIA~~VgT-----RT~~QVrSHAQKYf~kl~k 116 (304)
.|++|++-+|- -...+++.||++|+.....
T Consensus 75 ~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~ 109 (128)
T 1c20_A 75 LWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYEC 109 (128)
T ss_dssp THHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHH
T ss_pred cHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 79999988872 2368999999999666543
No 72
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=47.22 E-value=37 Score=23.68 Aligned_cols=27 Identities=33% Similarity=0.288 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhChhhHHHHhhcCC
Q 021972 71 EPEHDKFLEALQLFDRDWKKIEAFIGS 97 (304)
Q Consensus 71 eEEh~lFLeaLe~yGrdWkkIA~~VgT 97 (304)
+-|...+.++|+.+|+++.+.|+.+|-
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LGi 44 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 458889999999999999999999984
No 73
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=46.65 E-value=55 Score=22.25 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 021972 66 RESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (304)
Q Consensus 66 r~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k 116 (304)
...+|+.|.+.|.. + ..|...++||+.+|- +...|+.|-..-+.++..
T Consensus 9 ~~~L~~~e~~il~~-~-~~g~s~~eIA~~l~i-s~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 9 KPLLTKREREVFEL-L-VQDKTTKEIASELFI-SEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCHHHHHHHHH-H-TTTCCHHHHHHHHTS-CHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHH-H-HcCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHCC
Confidence 35788888887766 4 567799999999986 888999998877777753
No 74
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=45.52 E-value=68 Score=23.87 Aligned_cols=48 Identities=13% Similarity=0.023 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHHHHHHHHhhc
Q 021972 67 ESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 117 (304)
Q Consensus 67 ~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~ 117 (304)
...|+.|.+.|.. + ..|..-++||+.+|- +...|+.|...-+.++...
T Consensus 26 ~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 26 SGLTDQERTLLGL-L-SEGLTNKQIADRMFL-AEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp -CCCHHHHHHHHH-H-HTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHHTCC
T ss_pred hcCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHcCC
Confidence 4688888888777 4 778899999999986 8999999988888888654
No 75
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=41.20 E-value=62 Score=21.72 Aligned_cols=48 Identities=21% Similarity=0.208 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 021972 67 ESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (304)
Q Consensus 67 ~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k 116 (304)
..+++.|...|.. .-..|..+++||+.+|- +...|+.+..+-..++.+
T Consensus 14 ~~L~~~~r~il~l-~~~~g~s~~eIA~~lgi-s~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 14 ADLTTDQREALLL-TQLLGLSYADAAAVCGC-PVGTIRSRVARARDALLA 61 (70)
T ss_dssp TSSCHHHHHHHHH-HHTSCCCHHHHHHHHTS-CHHHHHHHHHHHHHHHHC
T ss_pred HhCCHHHHHHHHH-HHHcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHH
Confidence 3577777666553 23557799999999986 788888888777777764
No 76
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=40.85 E-value=28 Score=28.42 Aligned_cols=30 Identities=13% Similarity=0.446 Sum_probs=23.4
Q ss_pred hhHHHHhhcCC-----CCHHHHHHHHHHHHHHHhh
Q 021972 87 DWKKIEAFIGS-----KTVIQIRSHAQKYFLKVQK 116 (304)
Q Consensus 87 dWkkIA~~VgT-----RT~~QVrSHAQKYf~kl~k 116 (304)
.|++|++-+|- -...+++.||.||+.....
T Consensus 65 ~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~ 99 (121)
T 2rq5_A 65 KWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDS 99 (121)
T ss_dssp CHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHC
Confidence 79999988762 2357899999999877654
No 77
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=39.69 E-value=56 Score=22.66 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 021972 68 SWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (304)
Q Consensus 68 ~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k 116 (304)
..|+.|.+.|.. + ..|...++||+.++- +...|+.|-..-+.++..
T Consensus 16 ~L~~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 16 TLSERERQVLSA-V-VAGLPNKSIAYDLDI-SPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HHCHHHHHHHHH-H-TTTCCHHHHHHHTTS-CHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHcC
Confidence 467777777765 4 567799999999885 888999988777776653
No 78
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=37.31 E-value=61 Score=23.47 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 021972 67 ESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (304)
Q Consensus 67 ~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k 116 (304)
...|+.|.+.|.. + ..|..-++||+.++- +...|+.|-..-+.++..
T Consensus 20 ~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 20 NQLTPRERDILKL-I-AQGLPNKMIARRLDI-TESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GGSCHHHHHHHHH-H-TTTCCHHHHHHHHTS-CHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHcC
Confidence 4688999888776 4 567899999999985 889999988877777643
No 79
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=36.96 E-value=62 Score=24.14 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHhChhhHHHHhhcCC
Q 021972 69 WTEPEHDKFLEALQLFDRDWKKIEAFIGS 97 (304)
Q Consensus 69 WTeEEh~lFLeaLe~yGrdWkkIA~~VgT 97 (304)
..+-|...+.++|+.+|++..+.|+.+|-
T Consensus 48 l~~~E~~~i~~aL~~~~gn~~~aA~~LGI 76 (91)
T 1ntc_A 48 QPELERTLLTTALRHTQGHKQEAARLLGW 76 (91)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 34568889999999999999999999984
No 80
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=36.39 E-value=71 Score=23.91 Aligned_cols=47 Identities=15% Similarity=0.019 Sum_probs=37.0
Q ss_pred CCCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 021972 66 RESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 115 (304)
Q Consensus 66 r~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~ 115 (304)
...-|+.|.+.|.... -|..-++||+.++- +...|+.|..+-+.|+.
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~i-S~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADALHL-SKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHHTC-CHHHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHC
Confidence 3567888888776544 78899999999885 88999999988887775
No 81
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=36.25 E-value=33 Score=28.46 Aligned_cols=29 Identities=17% Similarity=0.399 Sum_probs=22.1
Q ss_pred hhHHHHhhcCCC-----CHHHHHHHHHHHHHHHh
Q 021972 87 DWKKIEAFIGSK-----TVIQIRSHAQKYFLKVQ 115 (304)
Q Consensus 87 dWkkIA~~VgTR-----T~~QVrSHAQKYf~kl~ 115 (304)
.|++|++-+|-- ...+++.||++|+....
T Consensus 87 ~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE 120 (145)
T 2kk0_A 87 LWREITKGLNLPTSITSAAFTLRTQYMKYLYPYE 120 (145)
T ss_dssp CHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 699999888732 26799999999955544
No 82
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=34.51 E-value=83 Score=23.85 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=24.2
Q ss_pred HhChhhHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 021972 83 LFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (304)
Q Consensus 83 ~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k 116 (304)
..|...+.||+.+|- +...|+++...-..++++
T Consensus 122 ~~g~s~~EIA~~lgi-s~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 122 IRGYSYREIATILSK-NLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp TTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHH
Confidence 345689999999885 778888777666666554
No 83
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=31.28 E-value=41 Score=27.28 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhCh-hhHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCC
Q 021972 72 PEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 119 (304)
Q Consensus 72 EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~g~ 119 (304)
+-+.++|+.|+.-|+ .|++||+.+|- +...|+.|. .++...|.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg~-s~~tv~~rl----~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVGL-STTPCWRRI----QKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHTC-CHHHHHHHH----HHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCc-CHHHHHHHH----HHHHHCCC
Confidence 557789999999887 99999999986 888888875 45555553
No 84
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=28.41 E-value=43 Score=25.36 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHH
Q 021972 71 EPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRS 105 (304)
Q Consensus 71 eEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrS 105 (304)
.+|-.+.|+ |+||+..|+.+|- +..+|..
T Consensus 12 r~~l~~lL~-----g~dW~~LA~~Lg~-~~~~I~~ 40 (85)
T 1ngr_A 12 REEVEKLLN-----GDTWRHLAGELGY-QPEHIDS 40 (85)
T ss_dssp THHHHHHSC-----TTHHHHHHHHTTC-CHHHHHH
T ss_pred HHHHHHHhC-----cCCHHHHHHHcCC-CHHHHHH
Confidence 355666666 9999999999997 4556555
No 85
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=28.23 E-value=85 Score=23.43 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=35.0
Q ss_pred HHHHHHHHHHh-----Ch--hhHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 021972 74 HDKFLEALQLF-----DR--DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAEHLPP 125 (304)
Q Consensus 74 h~lFLeaLe~y-----Gr--dWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~g~~~~iP~ 125 (304)
.+..|+.|+.+ |. .-.+|++.+|- +...|+. |+..|.+.|.....|.
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgv-S~~TVrr----~L~~Le~kG~I~R~~g 59 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGL-SIYQVRL----YLEQLHDVGVLEKVNA 59 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTC-CHHHHHH----HHHHHHHTTSEEEESC
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCC-CHHHHHH----HHHHHHHCCcEEecCC
Confidence 56678888888 55 79999999998 6766766 5777888776555543
No 86
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=27.62 E-value=1.3e+02 Score=20.82 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHH---hChhhHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 021972 68 SWTEPEHDKFLEALQL---FDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 115 (304)
Q Consensus 68 ~WTeEEh~lFLeaLe~---yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~ 115 (304)
.-++.|.+.|..-.-. .|..|++||+.+|- +...|+.|-.+-+.++.
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~i-s~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGV-TRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTC-CHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHH
Confidence 4566666666543322 35699999999885 78888888777777776
No 87
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=26.96 E-value=78 Score=23.95 Aligned_cols=29 Identities=7% Similarity=0.098 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHhChhhHHHHhhcCC
Q 021972 69 WTEPEHDKFLEALQLFDRDWKKIEAFIGS 97 (304)
Q Consensus 69 WTeEEh~lFLeaLe~yGrdWkkIA~~VgT 97 (304)
..+-|.+.+.++|++++++..+.|+.+|-
T Consensus 38 l~~~Er~~I~~aL~~~~GN~s~AA~~LGI 66 (81)
T 1umq_A 38 ADRVRWEHIQRIYEMCDRNVSETARRLNM 66 (81)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 34568888999999999999999999984
No 88
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=26.78 E-value=84 Score=22.90 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 021972 67 ESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (304)
Q Consensus 67 ~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k 116 (304)
...|+.|.+.|.. + ..|..-++||+.+|- +...|+.|-..-+.++..
T Consensus 28 ~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 28 EMLTEREMEILLL-I-AKGYSNQEIASASHI-TIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGCCSHHHHHHHH-H-HTTCCTTHHHHHHTC-CHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHCC
Confidence 4678888888876 4 678899999999885 889999998877777653
No 89
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=26.62 E-value=1.5e+02 Score=22.64 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 021972 67 ESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (304)
Q Consensus 67 ~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k 116 (304)
..-|+.|.+.|.. + ..|..-++||+.++- +...|+.|-+.-+.|+.-
T Consensus 33 ~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L~i-S~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 33 KRLSPKESEVLRL-F-AEGFLVTEIAKKLNR-SIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp SSCCHHHHHHHHH-H-HHTCCHHHHHHHHTS-CHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHCC
Confidence 4568888887755 3 368899999999886 889999998888777753
No 90
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=22.88 E-value=1.4e+02 Score=23.15 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHH
Q 021972 70 TEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRS 105 (304)
Q Consensus 70 TeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrS 105 (304)
++.-+..|..--+..|.+|+++|..+|- +..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~Lg~-s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELARELQF-SVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHTTC-CHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHcCC-CHHHHHH
Confidence 5555666666668889999999999984 4444443
No 91
>2lc3_A E3 ubiquitin-protein ligase hectd1; helical bundle, structural genomics, northeast structural GE consortium, NESG, structural genomics consortium; NMR {Homo sapiens}
Probab=22.82 E-value=94 Score=24.66 Aligned_cols=57 Identities=16% Similarity=0.283 Sum_probs=40.8
Q ss_pred ccCCCCCCHHH-----------HHHHHHHHHHhC-----hhhHH---HHhhcCCCCHHHHHHHHHHHHHHHhhcCC
Q 021972 63 TKSRESWTEPE-----------HDKFLEALQLFD-----RDWKK---IEAFIGSKTVIQIRSHAQKYFLKVQKNGT 119 (304)
Q Consensus 63 tk~r~~WTeEE-----------h~lFLeaLe~yG-----rdWkk---IA~~VgTRT~~QVrSHAQKYf~kl~k~g~ 119 (304)
+-..+.||.|+ ..-++.-|+..| ++|+- |.....|+...|...-|.++|..-.+.|+
T Consensus 10 ~~~~~~Ws~Eq~~~~L~Sd~lpKkdiIkfLq~na~~~FL~e~KLlGniKNVaKtanK~qLiaAY~~lfE~~~~~g~ 85 (88)
T 2lc3_A 10 NGKMGCWSIEHVEQYLGTDELPKNDLITYLQKNADAAFLRHWKLTGTNKSIRKNRNCSQLIAAYKDFCEHGTKSGL 85 (88)
T ss_dssp SCCCCCCCHHHHHHHBTSSSBCHHHHHHHHHHHSCHHHHHHTTCSSCHHHHHHHSCHHHHHHHHHHHHHHTCTTTS
T ss_pred cCccCcchHHHHhcccccccccHHHHHHHHHHcchHHHHHHHHHhccHHHHHhcCcHHHHHHHHHHHHhccccccc
Confidence 44578999999 445666677777 36764 45666788999999988888877655543
No 92
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=22.35 E-value=1.5e+02 Score=23.22 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhCh-hhHHHHhhcCCCCHHHHHHHHHHHHHHHhhcC
Q 021972 72 PEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 118 (304)
Q Consensus 72 EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~g 118 (304)
+-+.++|+.|+..|+ .+++||+.+|- +...|+.+. .++.+.|
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~lg~-s~~tv~~~l----~~L~~~G 51 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADILNT-TRQRIARRI----DKLKKLG 51 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHTTS-CHHHHHHHH----HHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHH----HHHHHCC
Confidence 445688899999887 99999999996 777787764 4555555
No 93
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=22.11 E-value=1.9e+02 Score=20.84 Aligned_cols=31 Identities=10% Similarity=0.019 Sum_probs=23.4
Q ss_pred ChhhHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 021972 85 DRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (304)
Q Consensus 85 GrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k 116 (304)
|...+.||+.+|- +...|+.|..+-+.++++
T Consensus 53 g~s~~eIA~~lgi-s~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 53 GWSTAQIATDLGI-AEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp CCCHHHHHHHHTS-CHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHH
Confidence 5688999988885 677888877776666654
No 94
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=21.60 E-value=1.2e+02 Score=25.11 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhCh-hhHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCC
Q 021972 71 EPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 119 (304)
Q Consensus 71 eEEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~g~ 119 (304)
++-+.++|+.|+..|+ .|++||+.+|- +...|+.| ..++.+.|.
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~lgl-S~~tv~~r----l~~L~~~G~ 70 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKITGL-AESTIHER----IRKLRESGV 70 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTS-CHHHHHHH----HHHHHHTTS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHH----HHHHHHCCC
Confidence 4566789999999987 99999999985 78888876 455666663
No 95
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=20.58 E-value=1.4e+02 Score=23.06 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhChhhHHHHhhcCC
Q 021972 71 EPEHDKFLEALQLFDRDWKKIEAFIGS 97 (304)
Q Consensus 71 eEEh~lFLeaLe~yGrdWkkIA~~VgT 97 (304)
+-|...+.++|+.+|++..+.|+.+|-
T Consensus 57 ~~Er~~I~~aL~~~~gn~~~AA~~LGI 83 (98)
T 1eto_A 57 EVEQPLLDMVMQYTLGNQTRAALMMGI 83 (98)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 568888999999999999999999984
No 96
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=20.56 E-value=1.6e+02 Score=23.10 Aligned_cols=43 Identities=19% Similarity=0.256 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhCh-hhHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCC
Q 021972 72 PEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 119 (304)
Q Consensus 72 EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~g~ 119 (304)
+-+.++|+.|+..|+ .+++||+.+|- +...|+.|. .++...|.
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~lg~-s~~tv~~~l----~~L~~~G~ 50 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKITGL-AESTIHERI----RKLRESGV 50 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHCS-CHHHHHHHH----HHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHH----HHHHHCCC
Confidence 446688999999887 99999999985 788887764 45555553
Done!