Query 021972
Match_columns 304
No_of_seqs 210 out of 697
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 12:04:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021972.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021972hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cu7a1 a.4.1.3 (A:8-72) MYSM1 99.6 2E-15 1.5E-19 109.4 8.0 53 67-119 3-55 (65)
2 d1irza_ a.4.1.11 (A:) Arr10-B 99.6 2.3E-15 1.7E-19 111.9 7.7 55 63-117 4-63 (64)
3 d1x41a1 a.4.1.1 (A:8-54) Trans 99.5 4.7E-15 3.4E-19 103.0 5.8 44 68-111 3-47 (47)
4 d2iw5b1 a.4.1.3 (B:376-440) RE 99.4 1.7E-13 1.2E-17 99.7 4.7 50 64-113 3-52 (65)
5 d1xc5a1 a.4.1.3 (A:413-480) Nu 99.3 3.7E-13 2.7E-17 98.7 5.3 45 64-108 15-59 (68)
6 d1guua_ a.4.1.3 (A:) c-Myb, DN 99.3 1E-12 7.6E-17 91.6 6.5 46 66-111 1-47 (50)
7 d2cjja1 a.4.1.3 (A:8-70) Radia 99.3 1.3E-12 9.6E-17 94.7 6.9 58 66-124 1-62 (63)
8 d1gvda_ a.4.1.3 (A:) c-Myb, DN 99.3 1.2E-12 8.7E-17 92.4 5.5 46 65-110 2-48 (52)
9 d1gv2a2 a.4.1.3 (A:144-190) c- 99.2 5.7E-12 4.2E-16 87.4 6.2 45 66-110 1-45 (47)
10 d2cqra1 a.4.1.3 (A:7-66) DnaJ 99.2 1.1E-11 8.1E-16 88.8 6.8 44 65-108 11-58 (60)
11 d2crga1 a.4.1.3 (A:8-64) Metas 99.1 3.5E-11 2.6E-15 86.2 6.1 41 67-107 2-43 (57)
12 d1w0ua_ a.4.1.4 (A:) Telomeric 99.0 2E-10 1.5E-14 81.3 6.9 45 66-110 2-49 (55)
13 d1w0ta_ a.4.1.4 (A:) DNA-bindi 99.0 3E-10 2.2E-14 79.7 6.6 45 66-110 2-49 (52)
14 d1igna1 a.4.1.6 (A:360-445) DN 98.8 8.7E-10 6.4E-14 84.9 4.4 48 66-113 1-54 (86)
15 d2ckxa1 a.4.1.3 (A:578-660) Te 98.5 8.1E-08 5.9E-12 72.6 6.6 47 67-113 1-52 (83)
16 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 98.5 1.1E-07 8.2E-12 68.9 6.5 43 67-110 2-48 (59)
17 d1ug2a_ a.4.1.3 (A:) 2610100b2 98.4 6.4E-07 4.6E-11 70.5 10.4 52 66-117 33-87 (95)
18 d1ofcx1 a.4.1.3 (X:799-850) SA 97.9 1.4E-05 9.9E-10 56.6 6.0 48 68-115 1-49 (52)
19 d1wgxa_ a.4.1.3 (A:) Hypotheti 96.9 0.0011 7.7E-08 49.5 6.7 47 65-114 7-57 (73)
20 d1x58a1 a.4.1.1 (A:8-56) Hypot 93.0 0.12 8.7E-06 35.3 6.0 40 66-105 1-43 (49)
21 d1ig6a_ a.4.3.1 (A:) MRF-2 DNA 86.3 0.41 3E-05 36.2 4.7 54 76-129 37-106 (107)
22 d1ofcx2 a.4.1.13 (X:851-978) S 85.9 1.1 7.7E-05 35.7 7.2 57 59-116 43-115 (128)
23 d1fexa_ a.4.1.3 (A:) Rap1 {Hum 83.6 0.77 5.6E-05 32.0 4.7 45 66-110 2-56 (59)
24 d1kkxa_ a.4.3.1 (A:) Transcrip 72.5 2.4 0.00017 31.6 4.8 42 76-117 38-87 (102)
25 d1ryua_ a.4.3.1 (A:) SWI-SNF c 61.9 2.9 0.00021 31.9 3.4 30 87-116 73-106 (120)
26 d1jhfa1 a.4.5.2 (A:2-72) LexA 51.1 18 0.0013 24.8 6.0 47 74-124 7-59 (71)
27 d2cyya1 a.4.5.32 (A:5-64) Puta 48.2 18 0.0013 23.7 5.3 38 72-110 3-41 (60)
28 d1g2ha_ a.4.1.12 (A:) Transcri 47.4 12 0.0009 25.1 4.4 41 68-118 17-58 (61)
29 d2cfxa1 a.4.5.32 (A:1-63) Tran 45.9 18 0.0013 24.1 5.1 38 72-110 5-43 (63)
30 d1fs1b1 a.157.1.1 (B:86-140) C 40.2 7.9 0.00057 26.1 2.4 20 87-106 34-53 (55)
31 d1c20a_ a.4.3.1 (A:) DNA-bindi 40.0 23 0.0016 26.8 5.4 40 76-115 56-108 (128)
32 d2cg4a1 a.4.5.32 (A:4-66) Regu 36.2 34 0.0025 22.5 5.3 38 72-110 5-43 (63)
33 d1i1ga1 a.4.5.32 (A:2-61) LprA 34.4 28 0.0021 22.8 4.6 38 72-110 3-41 (60)
34 d1rp3a2 a.4.13.2 (A:164-234) S 32.0 54 0.004 21.1 5.8 34 82-116 34-67 (71)
35 d1ig7a_ a.4.1.1 (A:) Msx-1 hom 31.6 62 0.0045 21.0 7.5 51 65-116 3-57 (58)
36 d1dpua_ a.4.5.16 (A:) C-termin 27.2 18 0.0013 25.3 2.6 40 246-285 7-49 (69)
37 d1fjla_ a.4.1.1 (A:) Paired pr 26.6 83 0.0061 20.8 7.6 52 64-116 4-59 (65)
38 d1nexa1 a.157.1.1 (A:116-185) 26.4 20 0.0015 24.9 2.7 20 87-106 35-54 (70)
39 d1vnda_ a.4.1.1 (A:) VND/NK-2 22.0 1.2E+02 0.0084 20.8 6.4 44 65-109 12-59 (77)
40 d1tz9a_ c.1.15.6 (A:) Mannonat 20.2 39 0.0028 29.8 4.0 54 65-118 38-98 (353)
No 1
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.58 E-value=2e-15 Score=109.43 Aligned_cols=53 Identities=42% Similarity=0.720 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCC
Q 021972 67 ESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 119 (304)
Q Consensus 67 ~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~g~ 119 (304)
..||+||+++|++++++||++|..||.+|++||..||++|+++|+.+..+.+.
T Consensus 3 ~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~ 55 (65)
T d2cu7a1 3 VKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGL 55 (65)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCT
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 57999999999999999999999999999999999999999999998876653
No 2
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.57 E-value=2.3e-15 Score=111.86 Aligned_cols=55 Identities=33% Similarity=0.468 Sum_probs=48.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhChhh---HHHHhh--cCCCCHHHHHHHHHHHHHHHhhc
Q 021972 63 TKSRESWTEPEHDKFLEALQLFDRDW---KKIEAF--IGSKTVIQIRSHAQKYFLKVQKN 117 (304)
Q Consensus 63 tk~r~~WTeEEh~lFLeaLe~yGrdW---kkIA~~--VgTRT~~QVrSHAQKYf~kl~k~ 117 (304)
.|.|..||+|||++|++||+.||++| +.|.++ |+++|..||+||+||||+++.+.
T Consensus 4 kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k~ 63 (64)
T d1irza_ 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 34578999999999999999999987 688766 66889999999999999999763
No 3
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.53 E-value=4.7e-15 Score=102.96 Aligned_cols=44 Identities=32% Similarity=0.516 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHHhCh-hhHHHHhhcCCCCHHHHHHHHHHHH
Q 021972 68 SWTEPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 111 (304)
Q Consensus 68 ~WTeEEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKYf 111 (304)
.||+||+.+|++++++||. +|+.||++|++||+.||+.|+++||
T Consensus 3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~f 47 (47)
T d1x41a1 3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF 47 (47)
T ss_dssp SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHhC
Confidence 5999999999999999995 8999999999999999999999997
No 4
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.37 E-value=1.7e-13 Score=99.65 Aligned_cols=50 Identities=28% Similarity=0.543 Sum_probs=45.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHHHHHHH
Q 021972 64 KSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLK 113 (304)
Q Consensus 64 k~r~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~k 113 (304)
+.+..||++|+.+|++++..||++|..||++|++||..||+.|+.+|..+
T Consensus 3 k~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~ 52 (65)
T d2iw5b1 3 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52 (65)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 34578999999999999999999999999999999999999998876543
No 5
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.34 E-value=3.7e-13 Score=98.70 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=41.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHH
Q 021972 64 KSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQ 108 (304)
Q Consensus 64 k~r~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQ 108 (304)
+....||+||+.+|++|+++||++|..||++|++||..||+.|+.
T Consensus 15 ~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy 59 (68)
T d1xc5a1 15 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYY 59 (68)
T ss_dssp TTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 445789999999999999999999999999999999999999963
No 6
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.32 E-value=1e-12 Score=91.63 Aligned_cols=46 Identities=26% Similarity=0.514 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHhC-hhhHHHHhhcCCCCHHHHHHHHHHHH
Q 021972 66 RESWTEPEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYF 111 (304)
Q Consensus 66 r~~WTeEEh~lFLeaLe~yG-rdWkkIA~~VgTRT~~QVrSHAQKYf 111 (304)
+..||.||+++|++++++|| ++|+.||.++++||..||+.|+++|+
T Consensus 1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 47 (50)
T d1guua_ 1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 47 (50)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhC
Confidence 46899999999999999999 59999999999999999999999874
No 7
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}
Probab=99.32 E-value=1.3e-12 Score=94.72 Aligned_cols=58 Identities=17% Similarity=0.465 Sum_probs=47.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCh----hhHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCCC
Q 021972 66 RESWTEPEHDKFLEALQLFDR----DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAEHLP 124 (304)
Q Consensus 66 r~~WTeEEh~lFLeaLe~yGr----dWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~g~~~~iP 124 (304)
+..||.||+.+|+++|+.||. .|.+||.+|++||..||+.|+++....+++.. +..||
T Consensus 1 G~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~dik~ie-sg~vp 62 (63)
T d2cjja1 1 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIE-SGKVP 62 (63)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHH-HSSCC
T ss_pred CcCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHHhhccc-cCCCC
Confidence 358999999999999999996 49999999999999999999976655555432 33454
No 8
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.30 E-value=1.2e-12 Score=92.36 Aligned_cols=46 Identities=17% Similarity=0.425 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-hhhHHHHhhcCCCCHHHHHHHHHHH
Q 021972 65 SRESWTEPEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKY 110 (304)
Q Consensus 65 ~r~~WTeEEh~lFLeaLe~yG-rdWkkIA~~VgTRT~~QVrSHAQKY 110 (304)
.+++||.||++++++++++|| ++|+.||.++++||..||+.++++|
T Consensus 2 ~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~ 48 (52)
T d1gvda_ 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhh
Confidence 468999999999999999999 5999999999999999999999877
No 9
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.23 E-value=5.7e-12 Score=87.37 Aligned_cols=45 Identities=24% Similarity=0.454 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHHhChhhHHHHhhcCCCCHHHHHHHHHHH
Q 021972 66 RESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKY 110 (304)
Q Consensus 66 r~~WTeEEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QVrSHAQKY 110 (304)
+.+||+||+++|++++++||.+|..||.++++||..||+.|+..+
T Consensus 1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~ 45 (47)
T d1gv2a2 1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 45 (47)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999998765
No 10
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.21 E-value=1.1e-11 Score=88.84 Aligned_cols=44 Identities=27% Similarity=0.433 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCh----hhHHHHhhcCCCCHHHHHHHHH
Q 021972 65 SRESWTEPEHDKFLEALQLFDR----DWKKIEAFIGSKTVIQIRSHAQ 108 (304)
Q Consensus 65 ~r~~WTeEEh~lFLeaLe~yGr----dWkkIA~~VgTRT~~QVrSHAQ 108 (304)
.+..||.||+.+|++||+.||. +|.+||++|++||..||+.|++
T Consensus 11 ~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~ 58 (60)
T d2cqra1 11 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYK 58 (60)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHH
Confidence 4578999999999999999995 6999999999999999999986
No 11
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.12 E-value=3.5e-11 Score=86.19 Aligned_cols=41 Identities=29% Similarity=0.499 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHHhChhhHHHHh-hcCCCCHHHHHHHH
Q 021972 67 ESWTEPEHDKFLEALQLFDRDWKKIEA-FIGSKTVIQIRSHA 107 (304)
Q Consensus 67 ~~WTeEEh~lFLeaLe~yGrdWkkIA~-~VgTRT~~QVrSHA 107 (304)
+.||+||+.+|++||..||+||.+|+. +|++||..||..|+
T Consensus 2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fY 43 (57)
T d2crga1 2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYY 43 (57)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHH
Confidence 579999999999999999999999996 68999999999986
No 12
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.04 E-value=2e-10 Score=81.30 Aligned_cols=45 Identities=18% Similarity=0.404 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHhC-hhhHHHHhh--cCCCCHHHHHHHHHHH
Q 021972 66 RESWTEPEHDKFLEALQLFD-RDWKKIEAF--IGSKTVIQIRSHAQKY 110 (304)
Q Consensus 66 r~~WTeEEh~lFLeaLe~yG-rdWkkIA~~--VgTRT~~QVrSHAQKY 110 (304)
+..||+||+++|++++++|| ++|..|+.. +.+||..||+.+++++
T Consensus 2 r~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~ 49 (55)
T d1w0ua_ 2 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM 49 (55)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHH
Confidence 56899999999999999999 599999986 4599999999998765
No 13
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.01 E-value=3e-10 Score=79.71 Aligned_cols=45 Identities=16% Similarity=0.439 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCh-hhHHHHhhc--CCCCHHHHHHHHHHH
Q 021972 66 RESWTEPEHDKFLEALQLFDR-DWKKIEAFI--GSKTVIQIRSHAQKY 110 (304)
Q Consensus 66 r~~WTeEEh~lFLeaLe~yGr-dWkkIA~~V--gTRT~~QVrSHAQKY 110 (304)
+++||+||+++|++++++||. +|..|++.+ ++||..||+.++.++
T Consensus 2 r~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl 49 (52)
T d1w0ta_ 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 579999999999999999995 999999764 589999999998765
No 14
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.84 E-value=8.7e-10 Score=84.88 Aligned_cols=48 Identities=21% Similarity=0.342 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCh------hhHHHHhhcCCCCHHHHHHHHHHHHHH
Q 021972 66 RESWTEPEHDKFLEALQLFDR------DWKKIEAFIGSKTVIQIRSHAQKYFLK 113 (304)
Q Consensus 66 r~~WTeEEh~lFLeaLe~yGr------dWkkIA~~VgTRT~~QVrSHAQKYf~k 113 (304)
++.||.||++++++.+++||. +|..||.+|++||..|||.++.+|+..
T Consensus 1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p 54 (86)
T d1igna1 1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK 54 (86)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 478999999999999999995 499999999999999999999887443
No 15
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=98.52 E-value=8.1e-08 Score=72.60 Aligned_cols=47 Identities=11% Similarity=0.350 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHHHhCh-hhHHHHhh----cCCCCHHHHHHHHHHHHHH
Q 021972 67 ESWTEPEHDKFLEALQLFDR-DWKKIEAF----IGSKTVIQIRSHAQKYFLK 113 (304)
Q Consensus 67 ~~WTeEEh~lFLeaLe~yGr-dWkkIA~~----VgTRT~~QVrSHAQKYf~k 113 (304)
.+||.||+++|++|+++||. +|..|+.. +..||..||+.++.+|...
T Consensus 1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~ 52 (83)
T d2ckxa1 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 52 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhh
Confidence 47999999999999999995 99999964 5689999999999887643
No 16
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.49 E-value=1.1e-07 Score=68.85 Aligned_cols=43 Identities=21% Similarity=0.529 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHHhCh----hhHHHHhhcCCCCHHHHHHHHHHH
Q 021972 67 ESWTEPEHDKFLEALQLFDR----DWKKIEAFIGSKTVIQIRSHAQKY 110 (304)
Q Consensus 67 ~~WTeEEh~lFLeaLe~yGr----dWkkIA~~VgTRT~~QVrSHAQKY 110 (304)
..||.||..+|..||.+|.. +|.+||++| +||..||..|+++.
T Consensus 2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l 48 (59)
T d2cqqa1 2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL 48 (59)
T ss_dssp CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 47999999999999999974 799999999 59999999988644
No 17
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.45 E-value=6.4e-07 Score=70.48 Aligned_cols=52 Identities=15% Similarity=0.223 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHHHHHHhChh---hHHHHhhcCCCCHHHHHHHHHHHHHHHhhc
Q 021972 66 RESWTEPEHDKFLEALQLFDRD---WKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 117 (304)
Q Consensus 66 r~~WTeEEh~lFLeaLe~yGrd---WkkIA~~VgTRT~~QVrSHAQKYf~kl~k~ 117 (304)
...||.||++.+|+.++++|-. |..|+..++.||..||+.++|......++.
T Consensus 33 ~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~~~ 87 (95)
T d1ug2a_ 33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTA 87 (95)
T ss_dssp CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHC
T ss_pred cCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 3689999999999999999954 999999999999999999998554444443
No 18
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=97.85 E-value=1.4e-05 Score=56.59 Aligned_cols=48 Identities=19% Similarity=0.406 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHHHHHhCh-hhHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 021972 68 SWTEPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 115 (304)
Q Consensus 68 ~WTeEEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKYf~kl~ 115 (304)
.|+..|=..|+.|+++||| |-..||..|.+||+.+|+.++.-|+.+.+
T Consensus 1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw~ry~ 49 (52)
T d1ofcx1 1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCT 49 (52)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4999999999999999998 99999999999999999999998888765
No 19
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.92 E-value=0.0011 Score=49.46 Aligned_cols=47 Identities=23% Similarity=0.460 Sum_probs=40.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCh----hhHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 021972 65 SRESWTEPEHDKFLEALQLFDR----DWKKIEAFIGSKTVIQIRSHAQKYFLKV 114 (304)
Q Consensus 65 ~r~~WTeEEh~lFLeaLe~yGr----dWkkIA~~VgTRT~~QVrSHAQKYf~kl 114 (304)
..+.|+++|-.++-.|+..+.+ -|.+||..|||||.++|-- ||-.+.
T Consensus 7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~---ky~~~~ 57 (73)
T d1wgxa_ 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQR---KYMENP 57 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHH---HHHHSS
T ss_pred cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHH---HHHhCc
Confidence 4579999999999999999984 7999999999999999976 554443
No 20
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=93.01 E-value=0.12 Score=35.33 Aligned_cols=40 Identities=15% Similarity=0.449 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHHHhChhhHHHH---hhcCCCCHHHHHH
Q 021972 66 RESWTEPEHDKFLEALQLFDRDWKKIE---AFIGSKTVIQIRS 105 (304)
Q Consensus 66 r~~WTeEEh~lFLeaLe~yGrdWkkIA---~~VgTRT~~QVrS 105 (304)
|..||+||-.-++.|++.||..|..|= -|-++|+....+.
T Consensus 1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~ 43 (49)
T d1x58a1 1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAH 43 (49)
T ss_dssp SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHH
Confidence 357999999999999999999999996 3557888877654
No 21
>d1ig6a_ a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=86.31 E-value=0.41 Score=36.22 Aligned_cols=54 Identities=24% Similarity=0.465 Sum_probs=35.4
Q ss_pred HHHHHHHHhCh--------hhHHHHhhcCC-----CCHHHHHHHHHHHH---HHHhhcCCCCCCCCCCCC
Q 021972 76 KFLEALQLFDR--------DWKKIEAFIGS-----KTVIQIRSHAQKYF---LKVQKNGTAEHLPPPRPK 129 (304)
Q Consensus 76 lFLeaLe~yGr--------dWkkIA~~VgT-----RT~~QVrSHAQKYf---~kl~k~g~~~~iP~pr~K 129 (304)
.+-.++...|+ .|..|++.+|- -...+++.|+++|+ .+..+.+..+.+|++++|
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~ia~~lg~~~~~~~~~~~Lk~~Y~~~L~~yE~~~~~~~~~~~p~~~~r 106 (107)
T d1ig6a_ 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKGEEDKPLPPIKPR 106 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTHHHHHHHTSSSSCTTCSC
T ss_pred HHHHHHHHhCChhhccccccHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 34445566662 59999987762 22469999999995 444445555567776654
No 22
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=85.86 E-value=1.1 Score=35.75 Aligned_cols=57 Identities=19% Similarity=0.385 Sum_probs=43.7
Q ss_pred CcccccCCCCCCHHHHHHHHHHHHHhCh-h---hHHHHh------------hcCCCCHHHHHHHHHHHHHHHhh
Q 021972 59 PYTITKSRESWTEPEHDKFLEALQLFDR-D---WKKIEA------------FIGSKTVIQIRSHAQKYFLKVQK 116 (304)
Q Consensus 59 Pytitk~r~~WTeEEh~lFLeaLe~yGr-d---WkkIA~------------~VgTRT~~QVrSHAQKYf~kl~k 116 (304)
.|..++. ..+|+||++-+|-.+.+||- + |..|-. |+.|||+.++.-++.-....+.+
T Consensus 43 ~y~~nk~-k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~k 115 (128)
T d1ofcx2 43 QYGNNKG-KNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIER 115 (128)
T ss_dssp CCTTCCC-SSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hccccCC-CccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHHH
Confidence 3443433 46999999999999999995 3 999842 45699999999999866555555
No 23
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=83.60 E-value=0.77 Score=32.04 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCh---------hhHHHHh-hcCCCCHHHHHHHHHHH
Q 021972 66 RESWTEPEHDKFLEALQLFDR---------DWKKIEA-FIGSKTVIQIRSHAQKY 110 (304)
Q Consensus 66 r~~WTeEEh~lFLeaLe~yGr---------dWkkIA~-~VgTRT~~QVrSHAQKY 110 (304)
|..+|+||+..+++-|..+.+ =|+.+++ -+...|..--|.|+.|+
T Consensus 2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~ 56 (59)
T d1fexa_ 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKH 56 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 578999999999999999842 5999994 67899999999987654
No 24
>d1kkxa_ a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=72.54 E-value=2.4 Score=31.59 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=33.7
Q ss_pred HHHHHHHHhCh--------hhHHHHhhcCCCCHHHHHHHHHHHHHHHhhc
Q 021972 76 KFLEALQLFDR--------DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 117 (304)
Q Consensus 76 lFLeaLe~yGr--------dWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~ 117 (304)
.|-.++..+|+ .|..|++.+|.-...+++.++++|+...++.
T Consensus 38 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~lr~~Y~~~L~~yE~~ 87 (102)
T d1kkxa_ 38 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYERH 87 (102)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcChHHhcccCcHHHHHHHHCCChHHHHHHHHHHHHHHHHHH
Confidence 34445566663 5999999999999999999999998887764
No 25
>d1ryua_ a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.86 E-value=2.9 Score=31.92 Aligned_cols=30 Identities=3% Similarity=0.260 Sum_probs=20.5
Q ss_pred hhHHHHhhcCCC--CH--HHHHHHHHHHHHHHhh
Q 021972 87 DWKKIEAFIGSK--TV--IQIRSHAQKYFLKVQK 116 (304)
Q Consensus 87 dWkkIA~~VgTR--T~--~QVrSHAQKYf~kl~k 116 (304)
.|..|++.+|-- |. .+++.||++|+....+
T Consensus 73 ~W~~Va~~l~~~~~~~~~~~Lk~~Y~r~L~~yE~ 106 (120)
T d1ryua_ 73 KWRELATNLNVGTSSSAASSLKKQYIQCLYAFEC 106 (120)
T ss_dssp HHHHHHHHTTSCCSSHHHHHHHHHHHHHTTTTTT
T ss_pred hHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 799999877632 22 3678888888655543
No 26
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=51.11 E-value=18 Score=24.75 Aligned_cols=47 Identities=11% Similarity=0.222 Sum_probs=34.4
Q ss_pred HHHHHHHHHHh----Ch--hhHHHHhhcCCCCHHHHHHHHHHHHHHHhhcCCCCCCC
Q 021972 74 HDKFLEALQLF----DR--DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAEHLP 124 (304)
Q Consensus 74 h~lFLeaLe~y----Gr--dWkkIA~~VgTRT~~QVrSHAQKYf~kl~k~g~~~~iP 124 (304)
...+|+.|..| |. ..++|++.+|-+++..|..| ...|.+.|.....|
T Consensus 7 Q~~vL~~I~~~~~~~G~~Ps~rei~~~~g~~S~stv~~~----l~~Le~kG~I~r~~ 59 (71)
T d1jhfa1 7 QQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEH----LKALARKGVIEIVS 59 (71)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHH----HHHHHHTTSEEECS
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCCHHHHHHH----HHHHHHCcCeecCC
Confidence 45566666555 54 79999999999898877775 67788777655543
No 27
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=48.17 E-value=18 Score=23.73 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhCh-hhHHHHhhcCCCCHHHHHHHHHHH
Q 021972 72 PEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKY 110 (304)
Q Consensus 72 EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKY 110 (304)
+-+.+.|+.|+.-++ .+.+||+.+|. +...|..+-++.
T Consensus 3 ~~D~~Il~~L~~n~r~s~~eiA~~l~l-s~~~v~~Ri~~L 41 (60)
T d2cyya1 3 EIDKKIIKILQNDGKAPLREISKITGL-AESTIHERIRKL 41 (60)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHHHHH
Confidence 457889999999887 99999999997 888998886544
No 28
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=47.43 E-value=12 Score=25.09 Aligned_cols=41 Identities=17% Similarity=0.086 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHHhChhhHHHHhhcC-CCCHHHHHHHHHHHHHHHhhcC
Q 021972 68 SWTEPEHDKFLEALQLFDRDWKKIEAFIG-SKTVIQIRSHAQKYFLKVQKNG 118 (304)
Q Consensus 68 ~WTeEEh~lFLeaLe~yGrdWkkIA~~Vg-TRT~~QVrSHAQKYf~kl~k~g 118 (304)
.=..-|...+.++|+.|| +..+.|+.+| +|+ ..+.|+++.|
T Consensus 17 ~~~~~Er~~I~~aL~~~g-n~~~aA~~Lgisr~---------tL~rKlkk~g 58 (61)
T d1g2ha_ 17 IIGFYEAQVLKLFYAEYP-STRKLAQRLGVSHT---------AIANKLKQYG 58 (61)
T ss_dssp SCSHHHHHHHHHHHHHSC-SHHHHHHHTTSCTH---------HHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHCC-CHHHHHHHHCCCHH---------HHHHHHHHhC
Confidence 334679999999999996 6788999998 454 3566777665
No 29
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=45.85 E-value=18 Score=24.11 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhCh-hhHHHHhhcCCCCHHHHHHHHHHH
Q 021972 72 PEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKY 110 (304)
Q Consensus 72 EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKY 110 (304)
+=+.+.|+.|+.-|+ ...+||+.+|- |...|..|-++.
T Consensus 5 ~~D~~IL~~L~~n~r~s~~~iA~~lgi-s~~tv~~Ri~~L 43 (63)
T d2cfxa1 5 QIDLNIIEELKKDSRLSMRELGRKIKL-SPPSVTERVRQL 43 (63)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHTC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHHHHH
Confidence 457889999999998 99999999985 788998876544
No 30
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.17 E-value=7.9 Score=26.08 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=17.8
Q ss_pred hhHHHHhhcCCCCHHHHHHH
Q 021972 87 DWKKIEAFIGSKTVIQIRSH 106 (304)
Q Consensus 87 dWkkIA~~VgTRT~~QVrSH 106 (304)
--+.||..+.+||++|||..
T Consensus 34 ~c~~vA~~ikgKt~eeiR~~ 53 (55)
T d1fs1b1 34 TCKTVANMIKGKTPEEIRKT 53 (55)
T ss_dssp HHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 57899999999999999973
No 31
>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=40.00 E-value=23 Score=26.81 Aligned_cols=40 Identities=13% Similarity=0.236 Sum_probs=27.6
Q ss_pred HHHHHHHHhCh--------hhHHHHhhcCC----CC-HHHHHHHHHHHHHHHh
Q 021972 76 KFLEALQLFDR--------DWKKIEAFIGS----KT-VIQIRSHAQKYFLKVQ 115 (304)
Q Consensus 76 lFLeaLe~yGr--------dWkkIA~~VgT----RT-~~QVrSHAQKYf~kl~ 115 (304)
+|-.++.+.|+ .|..|++.+|- .+ ..+++.+|.+|+.-.+
T Consensus 56 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~k~L~~fE 108 (128)
T d1c20a_ 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYE 108 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHhcCHHHhcccccHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 34455556662 59999988873 12 5689999999966544
No 32
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=36.22 E-value=34 Score=22.50 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhCh-hhHHHHhhcCCCCHHHHHHHHHHH
Q 021972 72 PEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKY 110 (304)
Q Consensus 72 EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKY 110 (304)
+=+.+.|+.|+.-++ .+.+||+-+|. +...|+.|-++.
T Consensus 5 ~~D~~IL~~L~~~~r~s~~eiA~~l~l-s~~~v~~Ri~rL 43 (63)
T d2cg4a1 5 NLDRGILEALMGNARTAYAELAKQFGV-SPETIHVRVEKM 43 (63)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHTS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHHHHH
Confidence 457789999999998 99999999987 888898876543
No 33
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=34.38 E-value=28 Score=22.81 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhCh-hhHHHHhhcCCCCHHHHHHHHHHH
Q 021972 72 PEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKY 110 (304)
Q Consensus 72 EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QVrSHAQKY 110 (304)
+-+.++|..|+.-|+ ...+||+-+|. +...|..|-++.
T Consensus 3 ~~D~kIl~~L~~n~r~s~~~lA~~~gl-s~~~v~~Ri~~L 41 (60)
T d1i1ga1 3 ERDKIILEILEKDARTPFTEIAKKLGI-SETAVRKRVKAL 41 (60)
T ss_dssp SHHHHHHHHHHHCTTCCHHHHHHHHTS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHHHHH
Confidence 457889999999998 99999999998 889999886654
No 34
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=32.00 E-value=54 Score=21.06 Aligned_cols=34 Identities=9% Similarity=0.138 Sum_probs=24.8
Q ss_pred HHhChhhHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 021972 82 QLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (304)
Q Consensus 82 e~yGrdWkkIA~~VgTRT~~QVrSHAQKYf~kl~k 116 (304)
-..|...++||+.+|- |...|+.|..+=..++++
T Consensus 34 ~~~~~s~~eIA~~lgi-s~~tv~~~~~ra~~~Lr~ 67 (71)
T d1rp3a2 34 FYEELPAKEVAKILET-SVSRVSQLKAKALERLRE 67 (71)
T ss_dssp HTSCCCHHHHHHHTTS-CHHHHHHHHHHHHHHHHH
T ss_pred HhHhCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHH
Confidence 3346689999999885 778888887766666653
No 35
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.60 E-value=62 Score=20.96 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCh----hhHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 021972 65 SRESWTEPEHDKFLEALQLFDR----DWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (304)
Q Consensus 65 ~r~~WTeEEh~lFLeaLe~yGr----dWkkIA~~VgTRT~~QVrSHAQKYf~kl~k 116 (304)
.+..||.++...+....+.--. .=+.||+.+|- +..||+.-.|+-..+..+
T Consensus 3 ~Rt~ft~~Ql~~Le~~F~~~~yP~~~~r~~LA~~l~l-~~~~V~~WFqNrR~k~kr 57 (58)
T d1ig7a_ 3 PRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSL-TETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC-ChhheeecCcchHhHhcc
Confidence 4678999999998888877542 67788899885 899999988877666543
No 36
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.20 E-value=18 Score=25.31 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=28.3
Q ss_pred ChHHHhhhhhcccCCCc--chHH-HhhhcCCcchHHHHHHHHh
Q 021972 246 DFAQVYTFIGSVFDPNA--SDHV-QKLKKMDPIDVETVCYIKN 285 (304)
Q Consensus 246 dFaqVY~FiGsvFdp~~--~~hl-qkLk~Mdpi~~eTvlllmr 285 (304)
-=.|||++|-+--+++. -.+| ++|+.|+.-+++-++=-|=
T Consensus 7 ~q~~V~~~i~s~~~~eGi~~~el~~~l~~~~~~~i~~aid~L~ 49 (69)
T d1dpua_ 7 AQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLS 49 (69)
T ss_dssp HHHHHHHHHHHCCCTTTEEHHHHHHHSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCccCcCHHHHHHHccCCCHHHHHHHHHHHH
Confidence 34689999999887652 2344 6688899888877664443
No 37
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=26.64 E-value=83 Score=20.85 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=41.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCh----hhHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 021972 64 KSRESWTEPEHDKFLEALQLFDR----DWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (304)
Q Consensus 64 k~r~~WTeEEh~lFLeaLe~yGr----dWkkIA~~VgTRT~~QVrSHAQKYf~kl~k 116 (304)
+.+..+|+++...+.+.++.-.. .=..||.-+|- +..||+.-+|+-..+..+
T Consensus 4 r~Rt~ft~~Q~~~Le~~F~~n~yPs~~~r~~LA~~lgl-~~~~V~~WFqNrR~k~kk 59 (65)
T d1fjla_ 4 RSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNL-TEARIQVWFQNRRARLRK 59 (65)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhCC-CHHHhhHhhhhHHHHHHh
Confidence 45678999999888888887653 66778888886 899999988887777654
No 38
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.38 E-value=20 Score=24.87 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=17.8
Q ss_pred hhHHHHhhcCCCCHHHHHHH
Q 021972 87 DWKKIEAFIGSKTVIQIRSH 106 (304)
Q Consensus 87 dWkkIA~~VgTRT~~QVrSH 106 (304)
--+.||..+.+||+.|||..
T Consensus 35 ~c~~vA~~ikgkt~eeiR~~ 54 (70)
T d1nexa1 35 GCKVVAEMIRGRSPEEIRRT 54 (70)
T ss_dssp HHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHH
Confidence 57889999999999999983
No 39
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=22.05 E-value=1.2e+02 Score=20.85 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=33.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCh----hhHHHHhhcCCCCHHHHHHHHHH
Q 021972 65 SRESWTEPEHDKFLEALQLFDR----DWKKIEAFIGSKTVIQIRSHAQK 109 (304)
Q Consensus 65 ~r~~WTeEEh~lFLeaLe~yGr----dWkkIA~~VgTRT~~QVrSHAQK 109 (304)
.+..+|.+.-..|...++.--. .=..||..+|- +..||+.-+|+
T Consensus 12 ~Rt~ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~l~l-~~~qV~~WFqN 59 (77)
T d1vnda_ 12 RRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRL-TPTQVKIWFQN 59 (77)
T ss_dssp SCCCCCTTHHHHHHHHHHHCSCCCHHHHHHHHHHHTC-CHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC-Chhhhhhcchh
Confidence 4568999888888888877653 66778888886 89999875543
No 40
>d1tz9a_ c.1.15.6 (A:) Mannonate dehydratase UxuA {Enterococcus faecalis (Streptococcus faecalis) [TaxId: 1351]}
Probab=20.23 E-value=39 Score=29.80 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=36.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhChhhHHHHh-----hc--CCCCHHHHHHHHHHHHHHHhhcC
Q 021972 65 SRESWTEPEHDKFLEALQLFDRDWKKIEA-----FI--GSKTVIQIRSHAQKYFLKVQKNG 118 (304)
Q Consensus 65 ~r~~WTeEEh~lFLeaLe~yGrdWkkIA~-----~V--gTRT~~QVrSHAQKYf~kl~k~g 118 (304)
.++.||.+|-..+.+.++.+|-.|.-|+. .| |.-..++-...++.-...+.+.|
T Consensus 38 ~G~~W~~~~i~~~k~~ie~~GL~~~vvEs~pv~e~Ik~g~~~~~~~Ien~~~slrnla~aG 98 (353)
T d1tz9a_ 38 PGDVWTVAEIQALKQSVEQEGLALLGIESVAIHDAIKAGTDQRDHYIDNYRQTLRNLGKCG 98 (353)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCEEEEECSCCCCHHHHHTCSTHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEecCCCChHHhhcCCCcHHHHHHHHHHHHHHHHHcC
Confidence 35789999999999999999988887742 22 34334443444444555555554
Done!