Query 021973
Match_columns 304
No_of_seqs 97 out of 106
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 07:03:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3966 p53-mediated apoptosis 100.0 4.2E-65 9.1E-70 471.8 21.7 219 43-291 82-303 (360)
2 PF07264 EI24: Etoposide-induc 100.0 7E-28 1.5E-32 215.1 15.7 204 26-261 1-208 (219)
3 PRK04949 putative sulfate tran 98.9 5.1E-07 1.1E-11 84.6 21.3 206 43-284 22-235 (251)
4 PRK12768 CysZ-like protein; Re 98.3 0.00028 6.2E-09 65.9 22.4 186 42-263 12-205 (240)
5 COG2981 CysZ Uncharacterized p 97.8 0.017 3.6E-07 54.2 22.6 193 45-270 22-223 (250)
6 COG4818 Predicted membrane pro 50.1 56 0.0012 27.1 5.8 38 42-82 26-63 (105)
7 PF12404 DUF3663: Peptidase ; 38.8 13 0.00029 29.3 0.6 14 243-256 64-77 (77)
8 KOG4561 Uncharacterized conser 21.5 7.6E+02 0.016 24.0 9.6 70 56-148 196-270 (281)
9 smart00724 TLC TRAM, LAG1 and 21.4 5.3E+02 0.012 22.2 9.0 73 54-144 131-203 (205)
10 PF00250 Fork_head: Fork head 19.5 1.2E+02 0.0027 24.3 3.1 35 210-252 6-40 (96)
No 1
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=100.00 E-value=4.2e-65 Score=471.84 Aligned_cols=219 Identities=25% Similarity=0.448 Sum_probs=204.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 021973 43 RSTKLLIRTGQCFLLNGFIFLGSMFVLKSAVIPFLLWILPDQCSQIRSQELCLDSGILKFYSFLRLALIQLLYIFWFYPL 122 (304)
Q Consensus 43 ~s~~l~~~~~qc~lLNg~iFlgSIl~f~~~~~P~l~~~l~~~~s~~~~~~~~~~~~~~~~~~~l~~~L~~lf~~lWv~Pl 122 (304)
.+|++.|+..|||++||+.++.|+++|+.+.+|+++..+.. ..+++.+|+ .+|+|++++|+.+|...|++|+
T Consensus 82 ~Ep~i~k~~F~cc~wngg~~w~s~llf~~v~ipiL~~~~s~-----f~g~~s~h~---~vw~wl~~~ls~lfg~iwVlPi 153 (360)
T KOG3966|consen 82 PEPPIKKDSFLCCLWNGGAMWISFLLFWQVCIPILGLFFSF-----FDGTDSGHN---VVWGWLHPILSLLFGYIWVLPI 153 (360)
T ss_pred CCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhe-----eccCCcccc---chHhhhhHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999987652 123555565 7999999999999999999999
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHcCCCCCCcccccchhhhhhhhhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021973 123 YVFSIVLSTLWYNDIAKYGFAAMGRSGQSSKELSRQDETLQNTEQKGRLPGLGGVMIVIGEQVYSMLLLSFFFVEVNAIG 202 (304)
Q Consensus 123 y~iS~iln~~W~~dIA~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~Iad~~y~vLl~~~f~lq~~ll~ 202 (304)
|++|+++|++||+|||++|+++.|++ |+.++++++++||++++.++|+.|++|++++.
T Consensus 154 F~lSkiV~alWF~DIa~aa~rv~k~~----------------------P~p~p~~Sk~~Ad~Lfs~l~Q~lFLiQgMlv~ 211 (360)
T KOG3966|consen 154 FFLSKIVQALWFSDIAGAAMRVLKLP----------------------PPPVPPFSKMLADTLFSALHQILFLIQGMLVQ 211 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC----------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999876 45678999999999999999999999999999
Q ss_pred ccC--chhHHHHHHHHHHHHHHhhhceeeccCCcchhHHHHHHhhhhhhhhcchhhhHHHhhhh-hhhHHHHHHHHHHHH
Q 021973 203 FLP--YIGKGFNFLLLSWMYAYYCFEYKWNFSEVGLDKRLDFFESNWAFFAGFGSPCVLAYFFF-SPLVAYGVMAILYPL 279 (304)
Q Consensus 203 ~iP--~iG~~l~fl~~s~lys~YcFEYkW~~~g~sL~~Rl~~fE~~WaYF~GFG~P~tl~t~~~-s~lv~~~ifallFPl 279 (304)
++| +||+.++++|||++||+|||||+|.++||+++||+++||+|||||+|||+|+|++|... |.+||+|+|+++||+
T Consensus 212 l~Pi~lVg~~i~~lHm~LLySlYcFeY~wfn~g~e~hrRl~~iE~nWPYffGFG~PLa~lt~~sSs~ivssciFsilFPl 291 (360)
T KOG3966|consen 212 LLPIPLVGPVIVYLHMALLYSLYCFEYFWFNYGLEFHRRLDIIESNWPYFFGFGTPLALLTSISSSMIVSSCIFSILFPL 291 (360)
T ss_pred hcChhhcchHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHhcCchhccCCcHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 987 99999999999999999999999999999999999999999999999999999999997 578999999999999
Q ss_pred HHHHhccCCCCC
Q 021973 280 GRKKLFLQKEDH 291 (304)
Q Consensus 280 fIi~~~~~~~~~ 291 (304)
|||++.++|+++
T Consensus 292 FIis~neak~p~ 303 (360)
T KOG3966|consen 292 FIISSNEAKYPA 303 (360)
T ss_pred HeecccccCCCc
Confidence 999999999543
No 2
>PF07264 EI24: Etoposide-induced protein 2.4 (EI24); PDB: 3TX3_B.
Probab=99.95 E-value=7e-28 Score=215.08 Aligned_cols=204 Identities=27% Similarity=0.473 Sum_probs=155.5
Q ss_pred HhHHHhhh-hhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhccccchhHHHH
Q 021973 26 EGLREACC-LHRVVILCRRSTKLLIRTGQCFLLNGFIFLGSMFVLKSAVIPFLLWILPDQCSQIRSQELCLDSGILKFYS 104 (304)
Q Consensus 26 ~G~~Da~~-~~r~v~~~~~s~~l~~~~~qc~lLNg~iFlgSIl~f~~~~~P~l~~~l~~~~s~~~~~~~~~~~~~~~~~~ 104 (304)
+|+++|+| +..+. ||++++...+|+++|++++.++.+.+...+.|.+.+.++...+ ..+.. . -
T Consensus 1 ~g~~~~~~~~~~~~-----~~~l~~~~l~p~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~wl~----~--~ 64 (219)
T PF07264_consen 1 CGFRYALRGFRLLF-----SPKLRRLSLIPLLLNLLLFLALFIFLWSYLDPLLEWLLSGSPS-----WDWLQ----W--L 64 (219)
T ss_dssp -STTHHHHHHHHHT-----STTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred CHHHHHHHHhHHhC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh-----hhHHH----H--H
Confidence 57888888 54443 9999999999999999999998988888888888765542110 00000 0 1
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHhHHhHHHHHHHHHHHcCCCCCCcccccchhhhhhhhhhcCCCCCchhhHHHHH
Q 021973 105 FLRLALIQLLYI--FWFYPLYVFSIVLSTLWYNDIAKYGFAAMGRSGQSSKELSRQDETLQNTEQKGRLPGLGGVMIVIG 182 (304)
Q Consensus 105 ~l~~~L~~lf~~--lWv~Ply~iS~iln~~W~~dIA~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~Ia 182 (304)
|+...+..++.+ .|++|.++.+.++|.+|++||++++-+..+++.-+ ...|+...++.+++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~i~~~ve~~~~~~~y~----------------~~~~~~~~~~~~~l~ 128 (219)
T PF07264_consen 65 WIAWIIFFLLAVLLFWLLFSYLISLIVSPFWYDDIAERVEKHLEGRHYP----------------HSPPSSFSSLWRSLK 128 (219)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTT---T----------------TSSCCCTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhhccCCCC----------------CccccccchHHHHHH
Confidence 455677777887 99999999999999999999999994333222111 023566788999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHH-hhhceeeccCCcchhHHHHHHhhhhhhhhcchhhhHHHh
Q 021973 183 EQVYSMLLLSFFFVEVNAIGFLPYIGKGFNFLLLSWMYAY-YCFEYKWNFSEVGLDKRLDFFESNWAFFAGFGSPCVLAY 261 (304)
Q Consensus 183 d~~y~vLl~~~f~lq~~ll~~iP~iG~~l~fl~~s~lys~-YcFEYkW~~~g~sL~~Rl~~fE~~WaYF~GFG~P~tl~t 261 (304)
+++++.++...+.++...+.+||++|+++.+++.+|+|++ |||||.|...|++.+||.+++|+||+|++|||+|++++.
T Consensus 129 ~~~~~~l~~l~~~l~~l~L~fIP~vg~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~er~~~~~~~~~~~~gfG~~~~ll~ 208 (219)
T PF07264_consen 129 DSLKSLLLFLVLLLLLLPLYFIPVVGQILFFVLWFWLNAYFLGFEYLWSSLGRSFEERKRFLERNRGYFLGFGLPFALLL 208 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTHHH----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999843
No 3
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=98.87 E-value=5.1e-07 Score=84.56 Aligned_cols=206 Identities=15% Similarity=0.208 Sum_probs=138.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhccccchhHHHHHHHHHHHHHHHH----HH
Q 021973 43 RSTKLLIRTGQCFLLNGFIFLGSMFVLKSAVIPFLLWILPDQCSQIRSQELCLDSGILKFYSFLRLALIQLLYI----FW 118 (304)
Q Consensus 43 ~s~~l~~~~~qc~lLNg~iFlgSIl~f~~~~~P~l~~~l~~~~s~~~~~~~~~~~~~~~~~~~l~~~L~~lf~~----lW 118 (304)
++|++|+=...=.++|.++|.+.+...-..+...+.|+.+.. .+-.+|++..+..+..+ +-
T Consensus 22 ~~P~lr~~~liPl~inllLf~~~l~~~~~~~~~~l~~l~~~~---------------p~wl~wl~~ll~~l~~l~~l~l~ 86 (251)
T PRK04949 22 LQPGLRRFVILPLLVNILLFGGAFWWLFTQLDAWIDWLMSQL---------------PDWLSWLSYLLWPLAVLSVLLVF 86 (251)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999988765444333444444443310 01224555555554442 22
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHcCCCCCCcccccchhhhhhhhhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 021973 119 FYPLYVFSIVLSTLWYNDIAKYGFAAMGRSGQSSKELSRQDETLQNTEQKGRLPGLGGVMIVIGEQVYSMLLLSFFFVEV 198 (304)
Q Consensus 119 v~Ply~iS~iln~~W~~dIA~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~Iad~~y~vLl~~~f~lq~ 198 (304)
.+=.-.++-++.+-++.++||+.=+...+++.. +. +-.+....+.+.+++++-++.......+-.
T Consensus 87 ~~lf~~v~~~IaaPF~~~lAE~VE~~l~g~~~~-----~~----------~~~~~~~~~~r~l~~el~kl~y~l~~~i~l 151 (251)
T PRK04949 87 SFFFSTLANFIAAPFNGLLAEKVEARLTGETLP-----DT----------GIAGLVKDVPRILKREWQKLAYYLPRAIVL 151 (251)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCC-----CC----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233334566778889999999986654332110 00 001223445567777775555555544545
Q ss_pred HHhhccCchh----HHHHHHHHHHHHHHhhhceeeccCCcchhHHHHHHhhhhhhhhcchhhhHHHhhhhhhhHHHHHHH
Q 021973 199 NAIGFLPYIG----KGFNFLLLSWMYAYYCFEYKWNFSEVGLDKRLDFFESNWAFFAGFGSPCVLAYFFFSPLVAYGVMA 274 (304)
Q Consensus 199 ~ll~~iP~iG----~~l~fl~~s~lys~YcFEYkW~~~g~sL~~Rl~~fE~~WaYF~GFG~P~tl~t~~~s~lv~~~ifa 274 (304)
.++.+||.+| +++-++.-+|+-+.=-+||-..++|.+..+|.+..-+|.+-=+|||...++++.. |++|-.
T Consensus 152 lll~fIP~vg~~~~pvl~~~~~awll~~ey~d~~~~r~~~~~~~~r~~l~~~r~~~~gfG~~~~l~~~I--PilNll--- 226 (251)
T PRK04949 152 LLLSFIPVVGQTVAPVLWFLFSAWMMAIQYCDYPFDNHKVSFKDMRAALRQKRGTSLQFGALVSLFTMI--PLLNLV--- 226 (251)
T ss_pred HHHHHHhhhccHHHHHHHHHHHHHHHHHHHhHhHHHHCCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHH--HHHHHH---
Confidence 5678999999 5899999999999999999999999999999999999999999999998877654 333432
Q ss_pred HHHHHHHHHh
Q 021973 275 ILYPLGRKKL 284 (304)
Q Consensus 275 llFPlfIi~~ 284 (304)
..|.-+.++
T Consensus 227 -~mP~aV~ga 235 (251)
T PRK04949 227 -IMPVAVCGA 235 (251)
T ss_pred -HHhHHHHHH
Confidence 336666644
No 4
>PRK12768 CysZ-like protein; Reviewed
Probab=98.31 E-value=0.00028 Score=65.88 Aligned_cols=186 Identities=11% Similarity=-0.016 Sum_probs=122.7
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccchhhhhhhhccccchhHHHHHHHHHHHHHHHH-
Q 021973 42 RRSTKLLIRTGQCFLLNGFIFLGSMFV----LKSAVIPFLLWILPDQCSQIRSQELCLDSGILKFYSFLRLALIQLLYI- 116 (304)
Q Consensus 42 ~~s~~l~~~~~qc~lLNg~iFlgSIl~----f~~~~~P~l~~~l~~~~s~~~~~~~~~~~~~~~~~~~l~~~L~~lf~~- 116 (304)
..||+.|+-..++..+-..++..--.. +...+.|.+.+..+. ..+--+|++..+..+..+
T Consensus 12 l~~~~~r~vl~~~~~lt~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~p~wl~wL~~ll~~l~~l~ 76 (240)
T PRK12768 12 LLSPPMRSVFWKVLGLTLLLLVVLWFALRRLFSWFAWPWAEQLLPG---------------FPDWAGWLGWVLSIAAGLG 76 (240)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------CccHHHHHHHHHHHHHHHH
Confidence 467888888888887777665442211 122222322222210 111224555555554442
Q ss_pred HHHHHHH---HHHHHHhHHhHHHHHHHHHHHcCCCCCCcccccchhhhhhhhhhcCCCCCchhhHHHHHHHHHHHHHHHH
Q 021973 117 FWFYPLY---VFSIVLSTLWYNDIAKYGFAAMGRSGQSSKELSRQDETLQNTEQKGRLPGLGGVMIVIGEQVYSMLLLSF 193 (304)
Q Consensus 117 lWv~Ply---~iS~iln~~W~~dIA~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~Iad~~y~vLl~~~ 193 (304)
+-+.-.| .++-++.+.++.++||+.-+..-.+. .|....++.+++.+++-.++....
T Consensus 77 ~l~~~~flf~~va~~IaapF~~~lae~VE~~~yp~~--------------------~~~~~~~i~~sl~~~l~~l~~~l~ 136 (240)
T PRK12768 77 LALGLALLIAPVTALIAGFFLDDVAEIVEREDYPAE--------------------PPGTALPLGRALIESLKFLGLVIL 136 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhCCCC--------------------CccccccHHHHHHHHHHHHHHHHH
Confidence 2222223 34577889999999988754211110 011223456677777777766666
Q ss_pred HHHHHHHhhccCchhHHHHHHHHHHHHHHhhhceeeccCCcchhHHHHHHhhhhhhhhcchhhhHHHhhh
Q 021973 194 FFVEVNAIGFLPYIGKGFNFLLLSWMYAYYCFEYKWNFSEVGLDKRLDFFESNWAFFAGFGSPCVLAYFF 263 (304)
Q Consensus 194 f~lq~~ll~~iP~iG~~l~fl~~s~lys~YcFEYkW~~~g~sL~~Rl~~fE~~WaYF~GFG~P~tl~t~~ 263 (304)
..+-...+.+||.+|.++.++..+|+.+-=-|||-..+++ +.+++.+...+|.+-..|||.+++++++.
T Consensus 137 ~~ll~L~L~fIP~v~~vl~~l~~awLl~~ey~d~a~~r~~-~~~e~r~~l~~~r~~~~~fG~~~all~~I 205 (240)
T PRK12768 137 GNLVALPLLFVPGINLIAFFVINGYLLGREFFEFAAMRFR-SEAEAKAFRRKHATTVFLAGLVIAAFVAI 205 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 6666767789999999999999999999866799999988 99999999999999999999999987765
No 5
>COG2981 CysZ Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]
Probab=97.76 E-value=0.017 Score=54.18 Aligned_cols=193 Identities=19% Similarity=0.240 Sum_probs=128.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhccccchhHHHHHHHHHHHHHHHHH-HHHHHH
Q 021973 45 TKLLIRTGQCFLLNGFIFLGSMFVLKSAVIPFLLWILPDQCSQIRSQELCLDSGILKFYSFLRLALIQLLYIF-WFYPLY 123 (304)
Q Consensus 45 ~~l~~~~~qc~lLNg~iFlgSIl~f~~~~~P~l~~~l~~~~s~~~~~~~~~~~~~~~~~~~l~~~L~~lf~~l-Wv~Ply 123 (304)
|-+|+-++-=.++|.....|-...+-+-..|-+..+.+ ++.+--+|++.++..+.-.. -+.=-|
T Consensus 22 pglrrfvilpLl~ni~L~~gl~~~~~~~~~~wid~Lm~---------------~iPdWl~wLs~v~~~la~L~lll~~~~ 86 (250)
T COG2981 22 PGLRRFVILPLLLNILLWGGLFWLLFSQALPWIDTLMP---------------GIPDWLGWLSYLLWILAVLLLLLVFAF 86 (250)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------cCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888999998777666666667777665554 22233366665544444421 111122
Q ss_pred HH---HHHHhHHhHHHHHHHHHHHcCCCCCCcccccchhhhhhhhhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021973 124 VF---SIVLSTLWYNDIAKYGFAAMGRSGQSSKELSRQDETLQNTEQKGRLPGLGGVMIVIGEQVYSMLLLSFFFVEVNA 200 (304)
Q Consensus 124 ~i---S~iln~~W~~dIA~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~Iad~~y~vLl~~~f~lq~~l 200 (304)
.+ +-++.+-|+.|.||..=+...+++.+. .+. -.-...+-++++.+.-.........+...+
T Consensus 87 lfs~v~~~IAapFng~lAEkvE~~l~g~~~~d---~~~------------~~l~~dipR~l~re~kkL~~~lp~~ivll~ 151 (250)
T COG2981 87 LFSTVANLIAAPFNGLLAEKVEKRLTGETPPD---PGG------------VGLMKDIPRALAREWKKLGYVLPGAIVLLL 151 (250)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHcCCCCCC---cch------------hhhhhhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33 445678899999998766554332110 000 001345567778888888888899999999
Q ss_pred hhccCchh----HHHHHHHHHHHHHHhhhceeeccCCcchhH-HHHHHhhhhhhhhcchhhhHHHhhhhhhhHHH
Q 021973 201 IGFLPYIG----KGFNFLLLSWMYAYYCFEYKWNFSEVGLDK-RLDFFESNWAFFAGFGSPCVLAYFFFSPLVAY 270 (304)
Q Consensus 201 l~~iP~iG----~~l~fl~~s~lys~YcFEYkW~~~g~sL~~-Rl~~fE~~WaYF~GFG~P~tl~t~~~s~lv~~ 270 (304)
+.++|-+| +++-|+.-+|+-|-=-|||--.+...+.++ |....+++ +==+|||...++.++. +++|-
T Consensus 152 L~fvP~~g~~v~pv~~flft~wmlaiqy~dyp~dnhk~~f~~mr~~l~q~~-~~~~~fGlv~~~f~~I--PlvNl 223 (250)
T COG2981 152 LLFVPGVGQTVAPVAWFLFTAWMLAIQYFDYPADNHKVPFAEMRLLLRQYR-VTVFGFGLVVALFTAI--PLVNL 223 (250)
T ss_pred HHHhcccCChHHHHHHHHHHHHHHHHHHhccHHhcCCCcHHHHHHHHHHhh-hHHHHHHHHHHHHHHH--HHHHH
Confidence 99999555 578899999999999999999999999555 55555555 4567899877755543 45553
No 6
>COG4818 Predicted membrane protein [Function unknown]
Probab=50.07 E-value=56 Score=27.05 Aligned_cols=38 Identities=26% Similarity=0.415 Sum_probs=27.0
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021973 42 RRSTKLLIRTGQCFLLNGFIFLGSMFVLKSAVIPFLLWILP 82 (304)
Q Consensus 42 ~~s~~l~~~~~qc~lLNg~iFlgSIl~f~~~~~P~l~~~l~ 82 (304)
++|+-+|=...|+++.=..+ +++.+-...+|.+.|++.
T Consensus 26 re~~FVrFHAmQS~ltF~~l---~~l~ill~~iP~Ig~lls 63 (105)
T COG4818 26 RESKFVRFHAMQSFLTFLGL---WLLIILLAFIPYIGWLLS 63 (105)
T ss_pred ccCcceeehhHHHHHHHHHH---HHHHHHHHHhhhhHHHHH
Confidence 45888888888998765554 344444556899888775
No 7
>PF12404 DUF3663: Peptidase ; InterPro: IPR008330 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family represents the peptidase B group of leucyl aminopeptidases, which are restricted to the gammaproteobacteria. They contain a C-terminal aminopeptidase catalytic domain and an N-terminal domain of unknown function. They are zinc-dependent exopeptidases (3.4.11.1 from EC) and belong to MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF). They selectively release N-terminal amino acid residues from polypeptides and proteins and are involved in the processing, catabolism and degradation of intracellular proteins [, , ]. Leucyl aminopeptidase forms a homohexamer containing two trimers stacked on top of one another []. Each monomer binds two zinc ions. The zinc-binding and catalytic sites are located within the C-terminal catalytic domain []. The same catalytic aminopeptidase domain is found in the other M17 peptidases IPR011356 from INTERPRO. These two groups of aminopeptidases differ by their N-terminal domains. The N-terminal domain in members of IPR011356 from INTERPRO has been implicated in DNA binding [, ] and it is not associated with members of this family which have a different N-terminal domain and therefore are not expected to bind DNA or be involved in transcriptional regulation. In addition, there are related proteins with the same catalytic domain and unique N-terminal sequences unrelated to any of the two N-terminal domains discussed above. For additional information please see [, , , ]. ; GO: 0004177 aminopeptidase activity, 0008235 metalloexopeptidase activity, 0030145 manganese ion binding, 0005737 cytoplasm
Probab=38.81 E-value=13 Score=29.28 Aligned_cols=14 Identities=57% Similarity=1.395 Sum_probs=11.8
Q ss_pred Hhhhhhhhhcchhh
Q 021973 243 FESNWAFFAGFGSP 256 (304)
Q Consensus 243 fE~~WaYF~GFG~P 256 (304)
+|+.|||+-||-.|
T Consensus 64 lE~~WAF~QGf~~~ 77 (77)
T PF12404_consen 64 LESQWAFYQGFRTP 77 (77)
T ss_pred HHHhhHHHhcccCC
Confidence 68899999999765
No 8
>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=21.50 E-value=7.6e+02 Score=24.01 Aligned_cols=70 Identities=20% Similarity=0.488 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHh
Q 021973 56 LLNGFIFLGSMFVLKSAVIPFLLWILPDQCSQIRSQELCLDSGILKFYSFLRLALIQLLYIFWFYPLYVFS-----IVLS 130 (304)
Q Consensus 56 lLNg~iFlgSIl~f~~~~~P~l~~~l~~~~s~~~~~~~~~~~~~~~~~~~l~~~L~~lf~~lWv~Ply~iS-----~iln 130 (304)
++||+.-+..-++-.-+..|-+.|...+. . + .-..-.+.|..|++++. -++|
T Consensus 196 ~vNG~lm~~~F~v~RIll~~~~~~~~~~~---~---~-----------------~~~~~~~~~~~~~~~l~~~~~L~v~N 252 (281)
T KOG4561|consen 196 KVNGLLLLVVFFVARILLWPYMGWHYYWR---Y---Q-----------------GLVLNQVPPFLPLFLLGLNALLLVLN 252 (281)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHH---H---h-----------------hhhhhhhchhHhHHHHHHHHHHHhhH
Confidence 58999855544433433477776644310 0 0 11112345666665543 5789
Q ss_pred HHhHHHHHHHHHHHcCCC
Q 021973 131 TLWYNDIAKYGFAAMGRS 148 (304)
Q Consensus 131 ~~W~~dIA~~a~~~~~~~ 148 (304)
-.|+..|-+.|.+..++.
T Consensus 253 l~Wf~km~~ga~K~~~~~ 270 (281)
T KOG4561|consen 253 LYWFSKMVRGALKVLKKA 270 (281)
T ss_pred HHHHHHHHHHHHHhcCcc
Confidence 999999999999987544
No 9
>smart00724 TLC TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.
Probab=21.43 E-value=5.3e+02 Score=22.23 Aligned_cols=73 Identities=18% Similarity=0.354 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 021973 54 CFLLNGFIFLGSMFVLKSAVIPFLLWILPDQCSQIRSQELCLDSGILKFYSFLRLALIQLLYIFWFYPLYVFSIVLSTLW 133 (304)
Q Consensus 54 c~lLNg~iFlgSIl~f~~~~~P~l~~~l~~~~s~~~~~~~~~~~~~~~~~~~l~~~L~~lf~~lWv~Ply~iS~iln~~W 133 (304)
-...|+..|+.+-+++..+..|..-+....+..+.. .+. ...+ . ...++ -+-..-..+|..|
T Consensus 131 ~~~~~~~~f~~~f~~~R~~~~p~~~~~~~~~~~~~~------~~~-~~~~-------~---~~~~~-~~~~~l~~ln~~W 192 (205)
T smart00724 131 LYDVNFVLFAVVFFVFRLILFPFLILTVTVHYAQAE------SGL-FPPL-------L---YLLFL-LLLLCLQLLNIYW 192 (205)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------cCC-CCcH-------H---HHHHH-HHHHHHHHHHHHH
Confidence 345889999999999999999987654321111100 000 0000 0 01111 1224456799999
Q ss_pred HHHHHHHHHHH
Q 021973 134 YNDIAKYGFAA 144 (304)
Q Consensus 134 ~~dIA~~a~~~ 144 (304)
+-.|-+.+.+.
T Consensus 193 f~~i~~~~~~~ 203 (205)
T smart00724 193 FFLILRMARKL 203 (205)
T ss_pred HHHHHHHHHHH
Confidence 99999988775
No 10
>PF00250 Fork_head: Fork head domain; InterPro: IPR001766 The fork head protein of Drosophila melanogaster, a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors []. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [, , ]. The fork head domain binds B-DNA as a monomer [], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2UZK_A 2K86_A 1JXS_A 2C6Y_A 2A3S_A 2D2W_A 2KIU_A 1VTN_C 2A07_J 2AS5_F ....
Probab=19.54 E-value=1.2e+02 Score=24.32 Aligned_cols=35 Identities=9% Similarity=0.282 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhhhceeeccCCcchhHHHHHHhhhhhhhhc
Q 021973 210 GFNFLLLSWMYAYYCFEYKWNFSEVGLDKRLDFFESNWAFFAG 252 (304)
Q Consensus 210 ~l~fl~~s~lys~YcFEYkW~~~g~sL~~Rl~~fE~~WaYF~G 252 (304)
....+.+++..| -.+..+|.+=-+++|+|||||--
T Consensus 6 Y~~LI~~Ai~~s--------p~~~Ltl~eIy~~i~~~~pyyr~ 40 (96)
T PF00250_consen 6 YATLIAMAILSS--------PDKRLTLSEIYEWIEENFPYYRD 40 (96)
T ss_dssp HHHHHHHHHHTS--------TTSEBEHHHHHHHHHHHCGHHHC
T ss_pred HHHHHHHHHHhC--------CCCCccHHHHHHHHHHhhccccc
Confidence 445666666664 35688999999999999999963
Done!