Query 021973
Match_columns 304
No_of_seqs 97 out of 106
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 12:05:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tx3_A Uncharacterized protein 98.9 6.6E-08 2.3E-12 89.0 18.2 191 43-263 25-220 (249)
2 1pp5_A Microcin J25; lariat, p 14.6 20 0.00069 21.3 -1.1 10 249-258 9-18 (26)
3 1v54_L VIIIA, cytochrome C oxi 13.0 1E+02 0.0034 21.0 1.9 26 234-259 13-39 (47)
4 4hkr_A Calcium release-activat 11.7 7.7E+02 0.026 21.8 8.1 66 181-259 61-128 (214)
5 3l2c_A Forkhead box protein O4 11.0 2.1E+02 0.0071 22.6 3.5 22 231-252 42-63 (110)
6 3bpy_A FORK head domain, forkh 10.4 2.4E+02 0.0082 21.2 3.5 35 210-252 10-44 (85)
7 2khr_A Protein MBTH; sideropho 10.2 1.1E+02 0.0036 22.9 1.4 14 235-248 47-60 (74)
8 2pst_X Hypothetical protein PA 10.0 97 0.0033 23.1 1.1 14 235-248 45-58 (74)
9 3vr8_D Succinate dehydrogenase 9.8 3.1E+02 0.011 23.2 4.3 41 187-227 91-141 (156)
10 2y69_L Cytochrome C oxidase su 9.7 1.4E+02 0.0049 21.4 1.9 25 235-259 30-55 (63)
No 1
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=98.91 E-value=6.6e-08 Score=88.96 Aligned_cols=191 Identities=14% Similarity=0.169 Sum_probs=129.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhccccchhHHHHHHHHHHHHHHHH-HHHHH
Q 021973 43 RSTKLLIRTGQCFLLNGFIFLGSMFVLKSAVIPFLLWILPDQCSQIRSQELCLDSGILKFYSFLRLALIQLLYI-FWFYP 121 (304)
Q Consensus 43 ~s~~l~~~~~qc~lLNg~iFlgSIl~f~~~~~P~l~~~l~~~~s~~~~~~~~~~~~~~~~~~~l~~~L~~lf~~-lWv~P 121 (304)
.+|++|+=...=.++|.++|.+-...+-.-+...+.+..+. ..+-.+|++..+..+..+ +-+.-
T Consensus 25 ~~p~lr~~vl~Pllinl~L~~~~~~~~~~~~~~~i~~~~~~---------------lp~Wl~wl~~ll~~l~~~~~lll~ 89 (249)
T 3tx3_A 25 RTKGLRRYVVVPILTNLILFSLAFTWLYGEVDYWLNRFMSW---------------LPDFFQWLEFILWPLAVITIIALF 89 (249)
T ss_dssp TSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------------CTTHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------------CCchHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999987775444322222222221110 001113444333333221 11111
Q ss_pred HH---HHHHHHhHHhHHHHHHHHHHHcCCCCCCcccccchhhhhhhhhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 021973 122 LY---VFSIVLSTLWYNDIAKYGFAAMGRSGQSSKELSRQDETLQNTEQKGRLPGLGGVMIVIGEQVYSMLLLSFFFVEV 198 (304)
Q Consensus 122 ly---~iS~iln~~W~~dIA~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~Iad~~y~vLl~~~f~lq~ 198 (304)
.| .++-++.+-++.++|++.=+...+++.+. + +..+-.+.+.+++.+++-.+.......+-.
T Consensus 90 ~~lf~~va~~IaapF~~~LAE~VE~~l~g~~~~~-------~--------~~~~~~~~l~r~l~~~l~~l~~~l~~~l~l 154 (249)
T 3tx3_A 90 SFIFSTIMHLIAAPFNGLLAEKVERYESGESLGD-------E--------GFLGLFKDIPRTLKREMQKLMYYIPRALGF 154 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTT-------C--------SSGGGSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCCc-------c--------chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 35566778899999999766554432210 0 001114556788889988888888888888
Q ss_pred HHhhc-cCchhHHHHHHHHHHHHHHhhhceeeccCCcchhHHHHHHhhhhhhhhcchhhhHHHhhh
Q 021973 199 NAIGF-LPYIGKGFNFLLLSWMYAYYCFEYKWNFSEVGLDKRLDFFESNWAFFAGFGSPCVLAYFF 263 (304)
Q Consensus 199 ~ll~~-iP~iG~~l~fl~~s~lys~YcFEYkW~~~g~sL~~Rl~~fE~~WaYF~GFG~P~tl~t~~ 263 (304)
..+++ ||.+|+++.++.-+|+-+.=-+||-..++|++.++|.+...+|-+-..|||.++++++..
T Consensus 155 l~L~f~IP~vg~vl~~~~~~~~lg~ey~d~~~~r~~~~~~~~~~~lr~~r~~~~~fG~~~~ll~~I 220 (249)
T 3tx3_A 155 FLLSLVIPVIGQVLWYIFVCWMMSIQYLDYPFDNHKLSFPRMRSELHQQRSKTLGFGFGVTVLTMI 220 (249)
T ss_dssp HHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHHHHTTS
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 88999 999999999999999999999999999999999999999999999999999999987754
No 2
>1pp5_A Microcin J25; lariat, protoknot, backbone-sidechain amide linkage, structu genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: j.5.1.1 PDB: 1q71_A
Probab=14.61 E-value=20 Score=21.29 Aligned_cols=10 Identities=40% Similarity=1.112 Sum_probs=8.6
Q ss_pred hhhcchhhhH
Q 021973 249 FFAGFGSPCV 258 (304)
Q Consensus 249 YF~GFG~P~t 258 (304)
||.|.|+|.+
T Consensus 9 yfvgigtpis 18 (26)
T 1pp5_A 9 YFVGIGTPIS 18 (26)
T ss_dssp CCSSSSCCCS
T ss_pred eeEecCCCeE
Confidence 8999999964
No 3
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=13.01 E-value=1e+02 Score=21.01 Aligned_cols=26 Identities=19% Similarity=0.555 Sum_probs=15.8
Q ss_pred cchhHHHHHHhhhhhhh-hcchhhhHH
Q 021973 234 VGLDKRLDFFESNWAFF-AGFGSPCVL 259 (304)
Q Consensus 234 ~sL~~Rl~~fE~~WaYF-~GFG~P~tl 259 (304)
.+.+.|-...-.-|.|| .|||.|..+
T Consensus 13 F~~~nk~~~~~~~~~f~g~GF~~PF~i 39 (47)
T 1v54_L 13 FSVENKWRLLAMMTLFFGSGFAAPFFI 39 (47)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccHHHHHHHHHHHHHHHhHHHH
Confidence 44555555555667765 477777664
No 4
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=11.70 E-value=7.7e+02 Score=21.81 Aligned_cols=66 Identities=21% Similarity=0.257 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-cCchhHHHHHHHHHHHHHHhhhceeeccCCcchhHH-HHHHhhhhhhhhcchhhhH
Q 021973 181 IGEQVYSMLLLSFFFVEVNAIGF-LPYIGKGFNFLLLSWMYAYYCFEYKWNFSEVGLDKR-LDFFESNWAFFAGFGSPCV 258 (304)
Q Consensus 181 Iad~~y~vLl~~~f~lq~~ll~~-iP~iG~~l~fl~~s~lys~YcFEYkW~~~g~sL~~R-l~~fE~~WaYF~GFG~P~t 258 (304)
++-.+...++..+.++=.+.... +|.|..+-+. +...| ..=+.++| -.|+|--|++=-+.|+++=
T Consensus 61 i~fav~Ttllv~vml~AlMIsTcILPnIeav~~~------h~~~~-------v~esPH~r~~~yIE~AW~fST~lGi~LF 127 (214)
T 4hkr_A 61 IAFAICTTLLVAVHMLALMISTCILPNIETVSNL------HSISL-------VHESPHERLHWYIETAWAFSTLLGLILF 127 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTC-----------------------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc------ccccc-------cCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444444444 4888644322 11122 11234555 5699999999999999954
Q ss_pred H
Q 021973 259 L 259 (304)
Q Consensus 259 l 259 (304)
+
T Consensus 128 L 128 (214)
T 4hkr_A 128 L 128 (214)
T ss_dssp H
T ss_pred H
Confidence 3
No 5
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=10.99 E-value=2.1e+02 Score=22.62 Aligned_cols=22 Identities=9% Similarity=0.243 Sum_probs=18.6
Q ss_pred cCCcchhHHHHHHhhhhhhhhc
Q 021973 231 FSEVGLDKRLDFFESNWAFFAG 252 (304)
Q Consensus 231 ~~g~sL~~Rl~~fE~~WaYF~G 252 (304)
.+..+|.+=-++|++|+|||-.
T Consensus 42 ~~~LtL~eIY~~I~~~fPyyr~ 63 (110)
T 3l2c_A 42 EKRLTLAQIYEWMVRTVPYFKD 63 (110)
T ss_dssp TSCBCHHHHHHHHHHHCGGGTT
T ss_pred ccCcCHHHHHHHHHHhCchhhc
Confidence 4568999999999999999964
No 6
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=10.36 E-value=2.4e+02 Score=21.16 Aligned_cols=35 Identities=9% Similarity=0.083 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhhceeeccCCcchhHHHHHHhhhhhhhhc
Q 021973 210 GFNFLLLSWMYAYYCFEYKWNFSEVGLDKRLDFFESNWAFFAG 252 (304)
Q Consensus 210 ~l~fl~~s~lys~YcFEYkW~~~g~sL~~Rl~~fE~~WaYF~G 252 (304)
....+.|++..| -.+..+|.+=-++|++|.|||-.
T Consensus 10 Y~~LI~~Ai~~s--------p~~~ltL~eIY~~i~~~fpyy~~ 44 (85)
T 3bpy_A 10 YAELISQAIESA--------PEKRLTLAQIYEWMVRTVPYFKD 44 (85)
T ss_dssp HHHHHHHHHHHS--------TTSCBCHHHHHHHHHHHCGGGTT
T ss_pred HHHHHHHHHHhC--------CcCCccHHHHHHHHHHhCcchhc
Confidence 344555565554 34568999999999999999964
No 7
>2khr_A Protein MBTH; siderophores, mycobactin, MTBH-like, 2-hydroxyphenyloxazolin tuberculosis, biosynthetic protein, structural genomics; NMR {Mycobacterium tuberculosis}
Probab=10.20 E-value=1.1e+02 Score=22.95 Aligned_cols=14 Identities=36% Similarity=0.750 Sum_probs=11.6
Q ss_pred chhHHHHHHhhhhh
Q 021973 235 GLDKRLDFFESNWA 248 (304)
Q Consensus 235 sL~~Rl~~fE~~Wa 248 (304)
+-++.++|+|++|.
T Consensus 47 sr~~CL~yIe~~Wt 60 (74)
T 2khr_A 47 SRAACLDYVEKNWT 60 (74)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhhc
Confidence 45778999999995
No 8
>2pst_X Hypothetical protein PA2412; pyoverdine synthesis, non-ribosomal peptide synthesis cluste like family, COG3251, unknown function; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: d.100.2.1 PDB: 2gpf_A
Probab=10.03 E-value=97 Score=23.13 Aligned_cols=14 Identities=21% Similarity=0.442 Sum_probs=11.3
Q ss_pred chhHHHHHHhhhhh
Q 021973 235 GLDKRLDFFESNWA 248 (304)
Q Consensus 235 sL~~Rl~~fE~~Wa 248 (304)
+-+..++|+|++|.
T Consensus 45 sr~~CL~yIe~~Wt 58 (74)
T 2pst_X 45 LKKDCLAYIEEVWT 58 (74)
T ss_dssp CHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHcc
Confidence 45678999999995
No 9
>3vr8_D Succinate dehydrogenase [ubiquinone] cytochrome B subunit, mitochondrial; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_D*
Probab=9.82 E-value=3.1e+02 Score=23.18 Aligned_cols=41 Identities=10% Similarity=0.023 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhhccC--chhHH--------HHHHHHHHHHHHhhhce
Q 021973 187 SMLLLSFFFVEVNAIGFLP--YIGKG--------FNFLLLSWMYAYYCFEY 227 (304)
Q Consensus 187 ~vLl~~~f~lq~~ll~~iP--~iG~~--------l~fl~~s~lys~YcFEY 227 (304)
.+++=+-.-.|+.+..++| ..|+. ++.....-++..|.|||
T Consensus 91 al~~H~h~GfqsvI~DYVp~rv~g~~~~K~A~~lL~~~s~~tl~GLy~f~t 141 (156)
T 3vr8_D 91 ALTLHVHWGVWGVVNDYGRPFVLGDTLAAAVRVGAYIFTACLLAGLLYFNE 141 (156)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhheecchhhcCchHHHHHHHHHHHHHHHHHHHheEeee
Confidence 3444556678999999998 45653 55666777899999996
No 10
>2y69_L Cytochrome C oxidase subunit 7C; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=9.66 E-value=1.4e+02 Score=21.43 Aligned_cols=25 Identities=20% Similarity=0.575 Sum_probs=14.7
Q ss_pred chhHHHHHHhhhhhhh-hcchhhhHH
Q 021973 235 GLDKRLDFFESNWAFF-AGFGSPCVL 259 (304)
Q Consensus 235 sL~~Rl~~fE~~WaYF-~GFG~P~tl 259 (304)
+.+.|-.+.-.-|.|| .|||.|+.+
T Consensus 30 ~~~nk~~~~~~~~~f~g~GF~~PF~i 55 (63)
T 2y69_L 30 SVENKWRLLAMMTLFFGSGFAAPFFI 55 (63)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhhhHHH
Confidence 4445555555566655 477777664
Done!