Query 021973
Match_columns 304
No_of_seqs 97 out of 106
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 12:06:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021973.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021973hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wiga1 g.39.1.3 (A:1-32) Acti 37.6 5.8 0.00042 23.5 1.2 15 288-302 13-27 (32)
2 d1kq8a_ a.4.5.14 (A:) HFH-1 (H 11.0 54 0.0039 22.5 1.9 22 231-252 14-35 (75)
3 d3bpya1 a.4.5.14 (A:93-177) Af 9.6 68 0.005 22.5 2.0 21 231-251 23-43 (85)
4 d2a07f1 a.4.5.14 (F:503-584) F 9.1 77 0.0056 22.1 2.1 34 211-252 8-41 (82)
5 d1jb0k_ f.30.1.1 (K:) Photosys 9.1 57 0.0042 21.7 1.3 24 248-271 30-53 (58)
6 d2pstx1 d.100.2.1 (X:8-68) Unc 8.0 62 0.0045 21.6 1.1 14 235-248 36-49 (61)
7 d2hdca_ a.4.5.14 (A:) Genesis 7.5 90 0.0066 22.3 1.9 34 211-252 8-41 (97)
8 d2hd9a1 b.122.1.8 (A:1-145) Hy 7.2 36 0.0026 26.0 -0.5 21 235-255 106-129 (145)
9 d1d5va_ a.4.5.14 (A:) Adipocyt 7.0 99 0.0072 22.0 1.9 35 210-252 9-43 (94)
10 d2axti1 f.23.37.1 (I:1-35) Pho 5.5 3.1E+02 0.023 16.0 3.6 20 51-70 3-22 (35)
No 1
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.59 E-value=5.8 Score=23.53 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=12.0
Q ss_pred CCCCCCccccCCccc
Q 021973 288 KEDHGKVLDLGDFRY 302 (304)
Q Consensus 288 ~~~~~~~~~~~~~~~ 302 (304)
|=-.||||.+||-.|
T Consensus 13 ~~ItGkVLEAG~khY 27 (32)
T d1wiga1 13 KYITGRVLEAGEKHY 27 (32)
T ss_dssp CCCSSCCBCCSSCCB
T ss_pred hhhhhhhhhcccccc
Confidence 335699999999877
No 2
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=11.04 E-value=54 Score=22.53 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=19.3
Q ss_pred cCCcchhHHHHHHhhhhhhhhc
Q 021973 231 FSEVGLDKRLDFFESNWAFFAG 252 (304)
Q Consensus 231 ~~g~sL~~Rl~~fE~~WaYF~G 252 (304)
.+..+|.+=-+++|+++|||-+
T Consensus 14 ~~~ltL~eIy~~i~~~fpy~r~ 35 (75)
T d1kq8a_ 14 GGRLTLAEINEYLMGKFPFFRG 35 (75)
T ss_dssp SSCBCHHHHHHHHHHHCTTGGG
T ss_pred CCCccHHHHHHHHHHhCccccc
Confidence 3578999999999999999964
No 3
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.63 E-value=68 Score=22.53 Aligned_cols=21 Identities=10% Similarity=0.252 Sum_probs=18.6
Q ss_pred cCCcchhHHHHHHhhhhhhhh
Q 021973 231 FSEVGLDKRLDFFESNWAFFA 251 (304)
Q Consensus 231 ~~g~sL~~Rl~~fE~~WaYF~ 251 (304)
.++.+|.+=-++||+++|||=
T Consensus 23 ~~~ltL~eIY~~i~~~fPyyr 43 (85)
T d3bpya1 23 EKRLTLAQIYEWMVRTVPYFK 43 (85)
T ss_dssp TSCBCHHHHHHHHHHHCGGGT
T ss_pred CCCccHHHHHHHHHHhChhhh
Confidence 457899999999999999995
No 4
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.12 E-value=77 Score=22.05 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhhceeeccCCcchhHHHHHHhhhhhhhhc
Q 021973 211 FNFLLLSWMYAYYCFEYKWNFSEVGLDKRLDFFESNWAFFAG 252 (304)
Q Consensus 211 l~fl~~s~lys~YcFEYkW~~~g~sL~~Rl~~fE~~WaYF~G 252 (304)
...+.+++..| -.++.+|.+=-+++|+++|||-.
T Consensus 8 ~~LI~~Ai~~s--------p~~~LtL~eIy~~i~~~fpyyr~ 41 (82)
T d2a07f1 8 ATLIRQAIMES--------SDRQLTLNEIYSWFTRTFAYFRR 41 (82)
T ss_dssp HHHHHHHHHHS--------TTSCBCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhC--------CCCCccHHHHHHHHHHhCccccc
Confidence 34455555544 34578999999999999999964
No 5
>d1jb0k_ f.30.1.1 (K:) Photosystem I reaction center subunit X, PsaK {Synechococcus elongatus [TaxId: 32046]}
Probab=9.08 E-value=57 Score=21.69 Aligned_cols=24 Identities=50% Similarity=0.754 Sum_probs=14.1
Q ss_pred hhhhcchhhhHHHhhhhhhhHHHH
Q 021973 248 AFFAGFGSPCVLAYFFFSPLVAYG 271 (304)
Q Consensus 248 aYF~GFG~P~tl~t~~~s~lv~~~ 271 (304)
.+|-|||.|--++|.-+-.+++.+
T Consensus 30 ~~fgg~g~~~lLat~s~GHilG~G 53 (58)
T d1jb0k_ 30 ALFEGFGLPELLATTSFGHLLAAG 53 (58)
T ss_dssp ------CCTTGGGHHHHHHHHHHH
T ss_pred hhccCCCHHHHHHHhhHHHHHhhh
Confidence 578999999988888777666654
No 6
>d2pstx1 d.100.2.1 (X:8-68) Uncharacterized protein PA2412 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.04 E-value=62 Score=21.63 Aligned_cols=14 Identities=21% Similarity=0.442 Sum_probs=11.1
Q ss_pred chhHHHHHHhhhhh
Q 021973 235 GLDKRLDFFESNWA 248 (304)
Q Consensus 235 sL~~Rl~~fE~~Wa 248 (304)
+-+..++|+|++|.
T Consensus 36 ~r~~Cl~yIe~~Wt 49 (61)
T d2pstx1 36 LKKDCLAYIEEVWT 49 (61)
T ss_dssp CHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHhc
Confidence 34678999999995
No 7
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.48 E-value=90 Score=22.28 Aligned_cols=34 Identities=6% Similarity=0.308 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhhceeeccCCcchhHHHHHHhhhhhhhhc
Q 021973 211 FNFLLLSWMYAYYCFEYKWNFSEVGLDKRLDFFESNWAFFAG 252 (304)
Q Consensus 211 l~fl~~s~lys~YcFEYkW~~~g~sL~~Rl~~fE~~WaYF~G 252 (304)
...+.+++..| -.+..+|.+=-+++|+|+|||-+
T Consensus 8 ~~LI~~Ai~~s--------p~~~ltL~eIY~~i~~~fpyfr~ 41 (97)
T d2hdca_ 8 IALITMAILQS--------PQKKLTLSGICEFISNRFPYYRE 41 (97)
T ss_dssp HHHHHHHHHTC--------TTTCBCHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHhC--------CCcCccHHHHHHHHHHhCccccC
Confidence 34555555544 35678999989999999999964
No 8
>d2hd9a1 b.122.1.8 (A:1-145) Hypothetical protein PH1033 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=7.24 E-value=36 Score=26.03 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=15.7
Q ss_pred chhHHHHHHhh--hh-hhhhcchh
Q 021973 235 GLDKRLDFFES--NW-AFFAGFGS 255 (304)
Q Consensus 235 sL~~Rl~~fE~--~W-aYF~GFG~ 255 (304)
+|-.+|+|++. +| .|++|+|+
T Consensus 106 ~l~~~L~fi~~k~~W~~y~~r~g~ 129 (145)
T d2hd9a1 106 PLINDLKFIKNKKRWSMHFFGKAM 129 (145)
T ss_dssp GGGGGCTTCCCSTTGGGGTTTCSE
T ss_pred HHHhHHHhhcCchhhhHHHhcCCc
Confidence 35567777775 89 78899886
No 9
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.99 E-value=99 Score=21.96 Aligned_cols=35 Identities=11% Similarity=0.247 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhhceeeccCCcchhHHHHHHhhhhhhhhc
Q 021973 210 GFNFLLLSWMYAYYCFEYKWNFSEVGLDKRLDFFESNWAFFAG 252 (304)
Q Consensus 210 ~l~fl~~s~lys~YcFEYkW~~~g~sL~~Rl~~fE~~WaYF~G 252 (304)
....+.+++..| -.++.+|.+=-+++|+|+|||-.
T Consensus 9 Ya~LI~~AI~~s--------p~~~ltL~eIY~~i~~~fpyfr~ 43 (94)
T d1d5va_ 9 YIALITMAIQNA--------PEKKITLNGIYQFIMDRFPFYRE 43 (94)
T ss_dssp HHHHHHHHHHTC--------SSSSBCHHHHHHHHHHHCTHHHH
T ss_pred HHHHHHHHHHhC--------CCCCccHHHHHHHHHHHCCccCc
Confidence 344555555543 34678999999999999999964
No 10
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.47 E-value=3.1e+02 Score=16.01 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021973 51 TGQCFLLNGFIFLGSMFVLK 70 (304)
Q Consensus 51 ~~qc~lLNg~iFlgSIl~f~ 70 (304)
++|.++.-.++|..|+++|-
T Consensus 3 tLKi~Vy~vV~fFv~lFiFG 22 (35)
T d2axti1 3 TLKITVYIVVTFFVLLFVFG 22 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEehhhHHHHHHHHHHHh
Confidence 35566666777778887765
Done!