Query 021974
Match_columns 304
No_of_seqs 135 out of 255
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 12:06:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qyp_A RNA polymerase II; tran 81.7 1.1 3.8E-05 31.4 3.1 38 38-75 15-55 (57)
2 1tfi_A Transcriptional elongat 81.0 1 3.6E-05 31.7 2.7 37 38-74 9-48 (50)
3 3h0g_I DNA-directed RNA polyme 72.6 3.2 0.00011 32.9 3.7 40 36-75 70-112 (113)
4 3po3_S Transcription elongatio 71.5 1.8 6.2E-05 37.1 2.2 37 38-74 137-176 (178)
5 1twf_I B12.6, DNA-directed RNA 65.5 5.4 0.00019 32.0 3.7 40 38-77 72-114 (122)
6 2fiy_A Protein FDHE homolog; F 60.9 3.3 0.00011 38.3 1.9 35 38-73 222-263 (309)
7 1pqv_S STP-alpha, transcriptio 60.8 3.6 0.00012 37.7 2.1 37 38-74 268-307 (309)
8 1gnf_A Transcription factor GA 49.3 9.4 0.00032 26.7 2.2 41 37-81 3-43 (46)
9 3qt1_I DNA-directed RNA polyme 46.2 4.2 0.00014 33.6 0.0 38 38-75 92-132 (133)
10 1ee8_A MUTM (FPG) protein; bet 44.1 8.2 0.00028 34.6 1.5 29 38-71 235-263 (266)
11 1k82_A Formamidopyrimidine-DNA 44.1 7.6 0.00026 34.8 1.3 29 38-71 240-268 (268)
12 3dfx_A Trans-acting T-cell-spe 44.0 18 0.00062 26.8 3.1 44 37-84 6-49 (63)
13 3cw1_L U1 small nuclear ribonu 43.7 6.1 0.00021 30.5 0.5 17 62-78 2-18 (77)
14 4gat_A Nitrogen regulatory pro 43.6 23 0.00077 26.4 3.6 46 35-84 6-51 (66)
15 3u6p_A Formamidopyrimidine-DNA 42.6 8.3 0.00028 34.7 1.3 30 37-71 244-273 (273)
16 2xzf_A Formamidopyrimidine-DNA 42.0 8.5 0.00029 34.4 1.3 29 38-71 242-270 (271)
17 3nw0_A Non-structural maintena 41.3 4.3 0.00015 35.9 -0.8 38 38-76 193-230 (238)
18 2kae_A GATA-type transcription 35.8 12 0.0004 28.5 1.0 49 33-84 3-51 (71)
19 1k3x_A Endonuclease VIII; hydr 35.4 11 0.00039 33.5 1.0 29 38-71 234-262 (262)
20 1pft_A TFIIB, PFTFIIBN; N-term 34.9 21 0.00071 24.0 2.1 33 37-75 4-36 (50)
21 2k2d_A Ring finger and CHY zin 34.8 15 0.00051 28.0 1.4 13 38-50 55-67 (79)
22 2gmg_A Hypothetical protein PF 31.1 28 0.00097 28.3 2.6 13 38-50 84-96 (105)
23 2pk7_A Uncharacterized protein 30.3 22 0.00076 26.5 1.7 30 37-73 7-36 (69)
24 2jny_A Uncharacterized BCR; st 29.2 19 0.00064 26.8 1.1 30 37-73 9-38 (67)
25 3t7l_A Zinc finger FYVE domain 26.7 42 0.0014 25.4 2.7 46 30-84 11-57 (90)
26 2jr6_A UPF0434 protein NMA0874 26.4 23 0.00077 26.4 1.2 30 37-73 7-36 (68)
27 4hc9_A Trans-acting T-cell-spe 26.1 48 0.0016 26.6 3.1 46 35-84 56-101 (115)
28 2vut_I AREA, nitrogen regulato 25.5 24 0.00084 24.2 1.1 40 39-82 2-41 (43)
29 2hf1_A Tetraacyldisaccharide-1 24.3 22 0.00076 26.4 0.8 30 37-73 7-36 (68)
30 2js4_A UPF0434 protein BB2007; 22.9 23 0.00079 26.4 0.6 31 37-74 7-37 (70)
31 2zjr_Z 50S ribosomal protein L 22.1 34 0.0012 24.9 1.4 25 36-72 28-52 (60)
32 1wd2_A Ariadne-1 protein homol 21.9 58 0.002 23.3 2.6 42 37-78 5-49 (60)
33 1wii_A Hypothetical UPF0222 pr 21.7 70 0.0024 24.8 3.2 41 33-74 18-58 (85)
34 2akl_A PHNA-like protein PA012 20.6 63 0.0022 27.6 2.9 33 38-78 27-59 (138)
No 1
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=81.69 E-value=1.1 Score=31.44 Aligned_cols=38 Identities=21% Similarity=0.682 Sum_probs=26.4
Q ss_pred cCCCCCCCCCCceeeeecccCCCCC---cchhhhhcccccc
Q 021974 38 ALKCPRCDSTNTKFCYYNNYSLSQP---RYFCKSCRRYWTK 75 (304)
Q Consensus 38 ~l~CPRC~S~nTKFcYyNNys~~QP---RhfCksCrRYWT~ 75 (304)
..+||+|...+..|--.+-.+...| .|.|..|.--|+.
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 5789999985444433333344445 3999999999976
No 2
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=81.03 E-value=1 Score=31.70 Aligned_cols=37 Identities=22% Similarity=0.669 Sum_probs=28.2
Q ss_pred cCCCCCCCCCCceeeeecccCCCCCc---chhhhhccccc
Q 021974 38 ALKCPRCDSTNTKFCYYNNYSLSQPR---YFCKSCRRYWT 74 (304)
Q Consensus 38 ~l~CPRC~S~nTKFcYyNNys~~QPR---hfCksCrRYWT 74 (304)
..+||+|...+..|--.+..+...|- |.|..|..-|.
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 56899999888777555555555553 89999998885
No 3
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=72.62 E-value=3.2 Score=32.93 Aligned_cols=40 Identities=20% Similarity=0.477 Sum_probs=26.3
Q ss_pred cccCCCCCCCCCCceeeeecccCCCCCc---chhhhhcccccc
Q 021974 36 EQALKCPRCDSTNTKFCYYNNYSLSQPR---YFCKSCRRYWTK 75 (304)
Q Consensus 36 e~~l~CPRC~S~nTKFcYyNNys~~QPR---hfCksCrRYWT~ 75 (304)
....+||+|...+..|-..+-.+...|- |.|..|.--|+.
T Consensus 70 ~~~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~~ 112 (113)
T 3h0g_I 70 RSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFEE 112 (113)
T ss_dssp BCCSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCCC
T ss_pred CcccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEec
Confidence 3348999999877554333333333232 889999999974
No 4
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=71.45 E-value=1.8 Score=37.10 Aligned_cols=37 Identities=19% Similarity=0.634 Sum_probs=23.9
Q ss_pred cCCCCCCCCCCceeeeecccCCCCC---cchhhhhccccc
Q 021974 38 ALKCPRCDSTNTKFCYYNNYSLSQP---RYFCKSCRRYWT 74 (304)
Q Consensus 38 ~l~CPRC~S~nTKFcYyNNys~~QP---RhfCksCrRYWT 74 (304)
..+||+|...+..|--.+-.+..-| -|.|..|..-|.
T Consensus 137 ~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 137 RFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp SSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred CcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 5799999976655422222222222 388999999995
No 5
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=65.48 E-value=5.4 Score=32.02 Aligned_cols=40 Identities=23% Similarity=0.555 Sum_probs=29.0
Q ss_pred cCCCCCCCCCCceeeeecccCCCCCc---chhhhhccccccCc
Q 021974 38 ALKCPRCDSTNTKFCYYNNYSLSQPR---YFCKSCRRYWTKGG 77 (304)
Q Consensus 38 ~l~CPRC~S~nTKFcYyNNys~~QPR---hfCksCrRYWT~GG 77 (304)
...||+|...+.-|-..+-.+...|- |.|..|.--|...-
T Consensus 72 ~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~nn 114 (122)
T 1twf_I 72 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQ 114 (122)
T ss_dssp CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCT
T ss_pred CCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccCC
Confidence 47899999877665444444444443 89999999998764
No 6
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=60.86 E-value=3.3 Score=38.33 Aligned_cols=35 Identities=23% Similarity=0.589 Sum_probs=25.4
Q ss_pred cCCCCCCCCCCceeeeecccC-------CCCCcchhhhhcccc
Q 021974 38 ALKCPRCDSTNTKFCYYNNYS-------LSQPRYFCKSCRRYW 73 (304)
Q Consensus 38 ~l~CPRC~S~nTKFcYyNNys-------~~QPRhfCksCrRYW 73 (304)
..+||.|..+ .++-|+.--. ...--+.|..|+.|+
T Consensus 222 R~~C~~Cg~~-~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~Yl 263 (309)
T 2fiy_A 222 RIKCSHCEES-KHLAYLSLEHDGQPAEKAVLRAETCPSCQGYL 263 (309)
T ss_dssp TTSCSSSCCC-SCCEEECCCC-CCCSTTCSEEEEEETTTTEEE
T ss_pred CcCCcCCCCC-CCeeEEEecCccccCCCcceEEEEcccccchH
Confidence 5789999998 4677775443 112238999999998
No 7
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=60.75 E-value=3.6 Score=37.70 Aligned_cols=37 Identities=19% Similarity=0.645 Sum_probs=23.9
Q ss_pred cCCCCCCCCCCceeeeecccCCCCC---cchhhhhccccc
Q 021974 38 ALKCPRCDSTNTKFCYYNNYSLSQP---RYFCKSCRRYWT 74 (304)
Q Consensus 38 ~l~CPRC~S~nTKFcYyNNys~~QP---RhfCksCrRYWT 74 (304)
...||+|...+..|-=.+..+...| -|.|..|..-|.
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 5689999966655422223333333 289999999885
No 8
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=49.33 E-value=9.4 Score=26.73 Aligned_cols=41 Identities=27% Similarity=0.631 Sum_probs=29.5
Q ss_pred ccCCCCCCCCCCceeeeecccCCCCCcchhhhhccccccCccccc
Q 021974 37 QALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRN 81 (304)
Q Consensus 37 ~~l~CPRC~S~nTKFcYyNNys~~QPRhfCksCrRYWT~GGtLRn 81 (304)
+...|..|....|-. +-.- .....+|-+|.-||-..|..|-
T Consensus 3 ~~~~C~~C~tt~Tp~--WR~g--p~G~~LCNaCGl~~k~~~~~RP 43 (46)
T 1gnf_A 3 EARECVNCGATATPL--WRRD--RTGHYLCNACGLYHKMNGQNRP 43 (46)
T ss_dssp CSCCCTTTCCCCCSS--CBCC--TTCCCBCSHHHHHHHHTCSCCC
T ss_pred CCCCCCCcCCCCCCc--CccC--CCCCccchHHHHHHHHcCCCCC
Confidence 356799999887753 2221 1223899999999999999874
No 9
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=46.21 E-value=4.2 Score=33.62 Aligned_cols=38 Identities=29% Similarity=0.722 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCceeeeecccCCCCC---cchhhhhcccccc
Q 021974 38 ALKCPRCDSTNTKFCYYNNYSLSQP---RYFCKSCRRYWTK 75 (304)
Q Consensus 38 ~l~CPRC~S~nTKFcYyNNys~~QP---RhfCksCrRYWT~ 75 (304)
..+||+|...+..|-..+-.+...| -|.|..|.--|..
T Consensus 92 ~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w~e 132 (133)
T 3qt1_I 92 DRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRWKE 132 (133)
T ss_dssp -----------------------------------------
T ss_pred cCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCEeCc
Confidence 5799999987765433333333222 2889999999975
No 10
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=44.11 E-value=8.2 Score=34.58 Aligned_cols=29 Identities=24% Similarity=0.668 Sum_probs=21.5
Q ss_pred cCCCCCCCCCCceeeeecccCCCCCcchhhhhcc
Q 021974 38 ALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRR 71 (304)
Q Consensus 38 ~l~CPRC~S~nTKFcYyNNys~~QPRhfCksCrR 71 (304)
..+||||...=.|.-+ -.+.-|||..|++
T Consensus 235 g~pC~~CG~~I~~~~~-----~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 235 GLPCPACGRPVERRVV-----AGRGTHFCPTCQG 263 (266)
T ss_dssp TSBCTTTCCBCEEEES-----SSCEEEECTTTTT
T ss_pred CCCCCCCCCEeeEEEE-----CCCceEECCCCCC
Confidence 4789999987666533 1355599999997
No 11
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=44.07 E-value=7.6 Score=34.77 Aligned_cols=29 Identities=14% Similarity=0.579 Sum_probs=21.3
Q ss_pred cCCCCCCCCCCceeeeecccCCCCCcchhhhhcc
Q 021974 38 ALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRR 71 (304)
Q Consensus 38 ~l~CPRC~S~nTKFcYyNNys~~QPRhfCksCrR 71 (304)
..+||||...=.|.-+ . .+.-|||..|++
T Consensus 240 g~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 268 (268)
T 1k82_A 240 GEPCRVCGTPIVATKH-A----QRATFYCRQCQK 268 (268)
T ss_dssp TSBCTTTCCBCEEEEE-T----TEEEEECTTTCC
T ss_pred CCCCCCCCCEeeEEEE-C----CCceEECCCCCC
Confidence 4789999987766543 2 345599999985
No 12
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=43.98 E-value=18 Score=26.79 Aligned_cols=44 Identities=18% Similarity=0.510 Sum_probs=31.8
Q ss_pred ccCCCCCCCCCCceeeeecccCCCCCcchhhhhccccccCcccccccC
Q 021974 37 QALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPV 84 (304)
Q Consensus 37 ~~l~CPRC~S~nTKFcYyNNys~~QPRhfCksCrRYWT~GGtLRnVPV 84 (304)
....|-.|..+.|-. +-.- .....+|-+|.-||-+.|..|-+.+
T Consensus 6 ~~~~C~~C~tt~Tp~--WR~g--p~G~~LCNACGl~~~~~~~~RP~~~ 49 (63)
T 3dfx_A 6 AGTSCANCQTTTTTL--WRRN--ANGDPVCNACGLYYKLHNINRPLTM 49 (63)
T ss_dssp TTCCCTTTCCSCCSS--CCCC--TTSCCCCHHHHHHHHHHSSCCCGGG
T ss_pred CCCcCCCcCCCCCCc--cCCC--CCCCchhhHHHHHHHHcCCCCCcCc
Confidence 356799999887753 2111 1223899999999999999887655
No 13
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=43.71 E-value=6.1 Score=30.54 Aligned_cols=17 Identities=29% Similarity=1.026 Sum_probs=15.0
Q ss_pred CcchhhhhccccccCcc
Q 021974 62 PRYFCKSCRRYWTKGGT 78 (304)
Q Consensus 62 PRhfCksCrRYWT~GGt 78 (304)
|||||+-|..|.|+.-.
T Consensus 2 PkYyCdYCd~~lt~Ds~ 18 (77)
T 3cw1_L 2 PKFYCDYCDTYLTHDSP 18 (77)
T ss_pred CCcccccCCceecCCCH
Confidence 89999999999987744
No 14
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=43.60 E-value=23 Score=26.41 Aligned_cols=46 Identities=15% Similarity=0.462 Sum_probs=32.8
Q ss_pred CcccCCCCCCCCCCceeeeecccCCCCCcchhhhhccccccCcccccccC
Q 021974 35 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPV 84 (304)
Q Consensus 35 pe~~l~CPRC~S~nTKFcYyNNys~~QPRhfCksCrRYWT~GGtLRnVPV 84 (304)
+.....|-.|.+.+|-- .-. ...-+ .+|-+|.-||-.-|++|-+..
T Consensus 6 ~~~~~~C~~C~t~~Tp~--WR~-gp~G~-~LCNaCGl~~~~~~~~RP~~~ 51 (66)
T 4gat_A 6 QNGPTTCTNCFTQTTPL--WRR-NPEGQ-PLCNACGLFLKLHGVVRPLSL 51 (66)
T ss_dssp SSSSCCCTTTCCCCCSS--CEE-ETTTE-EECHHHHHHHHHHCSCCCGGG
T ss_pred CCCCCCCCCCCCCCCCc--CCc-CCCCC-CccHHHHHHHHHcCCCCchhh
Confidence 34578999999988752 111 11222 899999999999999876543
No 15
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=42.57 E-value=8.3 Score=34.69 Aligned_cols=30 Identities=27% Similarity=0.628 Sum_probs=21.5
Q ss_pred ccCCCCCCCCCCceeeeecccCCCCCcchhhhhcc
Q 021974 37 QALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRR 71 (304)
Q Consensus 37 ~~l~CPRC~S~nTKFcYyNNys~~QPRhfCksCrR 71 (304)
...+||||...=.|.-+ . .+.-|||..|++
T Consensus 244 ~g~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 273 (273)
T 3u6p_A 244 QGNPCKRCGTPIEKTVV-A----GRGTHYCPRCQR 273 (273)
T ss_dssp TTSBCTTTCCBCEEEEE-T----TEEEEECTTTCC
T ss_pred CcCCCCCCCCeEEEEEE-C----CCCeEECCCCCC
Confidence 35699999987666433 2 245599999985
No 16
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=42.00 E-value=8.5 Score=34.43 Aligned_cols=29 Identities=28% Similarity=0.651 Sum_probs=21.4
Q ss_pred cCCCCCCCCCCceeeeecccCCCCCcchhhhhcc
Q 021974 38 ALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRR 71 (304)
Q Consensus 38 ~l~CPRC~S~nTKFcYyNNys~~QPRhfCksCrR 71 (304)
..+||||...=.|.-+ . .+.-|||..|++
T Consensus 242 G~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 242 GEKCSRCGAEIQKIKV-A----GRGTHFCPVCQQ 270 (271)
T ss_dssp TSBCTTTCCBCEEEEE-T----TEEEEECTTTSC
T ss_pred CCCCCCCCCEeeEEEE-C----CCceEECCCCCC
Confidence 4789999987666533 2 345599999996
No 17
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=41.30 E-value=4.3 Score=35.93 Aligned_cols=38 Identities=24% Similarity=0.569 Sum_probs=30.6
Q ss_pred cCCCCCCCCCCceeeeecccCCCCCcchhhhhccccccC
Q 021974 38 ALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKG 76 (304)
Q Consensus 38 ~l~CPRC~S~nTKFcYyNNys~~QPRhfCksCrRYWT~G 76 (304)
...||.|...=+..|+.. |-.++....|..|+..|+..
T Consensus 193 g~~C~~C~~~~H~~C~~~-~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 193 GQSCETCGIRMHLPCVAK-YFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CEECSSSCCEECHHHHHH-HTTTCSSCBCTTTCCBCCSC
T ss_pred CcccCccChHHHHHHHHH-HHHhCCCCCCCCCCCCCCCC
Confidence 588999998888888754 44466778899999999865
No 18
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=35.80 E-value=12 Score=28.46 Aligned_cols=49 Identities=22% Similarity=0.411 Sum_probs=32.8
Q ss_pred CCCcccCCCCCCCCCCceeeeecccCCCCCcchhhhhccccccCcccccccC
Q 021974 33 PQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPV 84 (304)
Q Consensus 33 p~pe~~l~CPRC~S~nTKFcYyNNys~~QPRhfCksCrRYWT~GGtLRnVPV 84 (304)
++++....|-.|..+.|-. +-.-..... .+|-+|.-||-+.|+.|-+..
T Consensus 3 ~~~~~~~~C~nC~tt~Tp~--WRrg~~~~g-~LCNACGl~~~~~~~~RP~~~ 51 (71)
T 2kae_A 3 HMNKKSFQCSNCSVTETIR--WRNIRSKEG-IQCNACFIYQRKYNKTRPVTA 51 (71)
T ss_dssp -----CCCCSSSCCSCCSS--CCCCSSSSC-CCSSHHHHHHHHHHSCCCTHH
T ss_pred CCCCCCCcCCccCCCCCCc--cccCCCCCC-ccchHHHHHHHHhCCCCCccc
Confidence 3455678999999998853 333111222 899999999999999886654
No 19
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=35.39 E-value=11 Score=33.48 Aligned_cols=29 Identities=34% Similarity=0.792 Sum_probs=20.6
Q ss_pred cCCCCCCCCCCceeeeecccCCCCCcchhhhhcc
Q 021974 38 ALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRR 71 (304)
Q Consensus 38 ~l~CPRC~S~nTKFcYyNNys~~QPRhfCksCrR 71 (304)
..+||||...=.|.-+ . .+.-|||..|++
T Consensus 234 g~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 262 (262)
T 1k3x_A 234 GEPCERCGSIIEKTTL-S----SRPFYWCPGCQH 262 (262)
T ss_dssp TSBCTTTCCBCEEEEE-T----TEEEEECTTTCC
T ss_pred cCCCCCCCCEeEEEEE-C----CCCeEECCCCCC
Confidence 4689999987665432 2 344599999985
No 20
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=34.87 E-value=21 Score=24.05 Aligned_cols=33 Identities=18% Similarity=0.524 Sum_probs=22.5
Q ss_pred ccCCCCCCCCCCceeeeecccCCCCCcchhhhhcccccc
Q 021974 37 QALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTK 75 (304)
Q Consensus 37 ~~l~CPRC~S~nTKFcYyNNys~~QPRhfCksCrRYWT~ 75 (304)
..+.||.|.+.+-.| ...+-...|+.|+.-+..
T Consensus 4 ~~~~CP~C~~~~l~~------d~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 4 KQKVCPACESAELIY------DPERGEIVCAKCGYVIEE 36 (50)
T ss_dssp SCCSCTTTSCCCEEE------ETTTTEEEESSSCCBCCC
T ss_pred ccEeCcCCCCcceEE------cCCCCeEECcccCCcccc
Confidence 367899998854433 223456899999776643
No 21
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=34.76 E-value=15 Score=27.98 Aligned_cols=13 Identities=46% Similarity=0.907 Sum_probs=11.6
Q ss_pred cCCCCCCCCCCce
Q 021974 38 ALKCPRCDSTNTK 50 (304)
Q Consensus 38 ~l~CPRC~S~nTK 50 (304)
.++||.|.|.||+
T Consensus 55 g~kC~~C~SyNTr 67 (79)
T 2k2d_A 55 GMKCKICESYNTA 67 (79)
T ss_dssp CCCCTTTSCCCEE
T ss_pred cccCcCCCCcCeE
Confidence 4599999999998
No 22
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=31.11 E-value=28 Score=28.31 Aligned_cols=13 Identities=31% Similarity=0.866 Sum_probs=10.2
Q ss_pred cCCCCCCCCCCce
Q 021974 38 ALKCPRCDSTNTK 50 (304)
Q Consensus 38 ~l~CPRC~S~nTK 50 (304)
+-.||+|.|.+..
T Consensus 84 PsrCP~CkSe~Ie 96 (105)
T 2gmg_A 84 PSRCPKCKSEWIE 96 (105)
T ss_dssp CSSCSSSCCCCBC
T ss_pred CCCCcCCCCCccC
Confidence 4689999988765
No 23
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=30.33 E-value=22 Score=26.47 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=20.1
Q ss_pred ccCCCCCCCCCCceeeeecccCCCCCcchhhhhcccc
Q 021974 37 QALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYW 73 (304)
Q Consensus 37 ~~l~CPRC~S~nTKFcYyNNys~~QPRhfCksCrRYW 73 (304)
+.+.||.|...-. | ........|+.|++-+
T Consensus 7 eiL~CP~ck~~L~----~---~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 7 DILACPICKGPLK----L---SADKTELISKGAGLAY 36 (69)
T ss_dssp GTCCCTTTCCCCE----E---CTTSSEEEETTTTEEE
T ss_pred hheeCCCCCCcCe----E---eCCCCEEEcCCCCcEe
Confidence 4788999986422 1 2335668899997654
No 24
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=29.23 E-value=19 Score=26.84 Aligned_cols=30 Identities=17% Similarity=0.301 Sum_probs=20.0
Q ss_pred ccCCCCCCCCCCceeeeecccCCCCCcchhhhhcccc
Q 021974 37 QALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYW 73 (304)
Q Consensus 37 ~~l~CPRC~S~nTKFcYyNNys~~QPRhfCksCrRYW 73 (304)
+.+.||.|... .-| ........|+.|++-+
T Consensus 9 eiL~CP~ck~~---L~~----~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 9 EVLACPKDKGP---LRY----LESEQLLVNERLNLAY 38 (67)
T ss_dssp CCCBCTTTCCB---CEE----ETTTTEEEETTTTEEE
T ss_pred HHhCCCCCCCc---CeE----eCCCCEEEcCCCCccc
Confidence 47889999883 222 2235568899997655
No 25
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=26.73 E-value=42 Score=25.41 Aligned_cols=46 Identities=24% Similarity=0.592 Sum_probs=27.7
Q ss_pred CCCCCCc-ccCCCCCCCCCCceeeeecccCCCCCcchhhhhccccccCcccccccC
Q 021974 30 KPRPQPE-QALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPV 84 (304)
Q Consensus 30 ~p~p~pe-~~l~CPRC~S~nTKFcYyNNys~~QPRhfCksCrRYWT~GGtLRnVPV 84 (304)
+|.-.|+ +...|..|.. +| ++..-||-|+.|++-.=..=+-..+|+
T Consensus 11 ~p~W~~d~~~~~C~~C~~---~F------~~~~RrhhCr~CG~v~C~~Cs~~~~~l 57 (90)
T 3t7l_A 11 QPTWVPDSEAPNCMNCQV---KF------TFTKRRHHCRACGKVFCGVCCNRKCKL 57 (90)
T ss_dssp CCCCCCGGGCCBCTTTCC---BC------CSSSCCEECTTTCCEECGGGSCEEEEE
T ss_pred CCcCcccccCCcCcCCCC---cc------cchhhCccccCCCCEECCcccCCeeec
Confidence 3433444 4667888876 33 244678888888776655544444444
No 26
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=26.44 E-value=23 Score=26.36 Aligned_cols=30 Identities=13% Similarity=0.406 Sum_probs=19.8
Q ss_pred ccCCCCCCCCCCceeeeecccCCCCCcchhhhhcccc
Q 021974 37 QALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYW 73 (304)
Q Consensus 37 ~~l~CPRC~S~nTKFcYyNNys~~QPRhfCksCrRYW 73 (304)
+.+.||.|... .-| ........|+.|++-+
T Consensus 7 ~iL~CP~ck~~---L~~----~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 7 DILVCPVTKGR---LEY----HQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCCBCSSSCCB---CEE----ETTTTEEEETTTTEEE
T ss_pred hheECCCCCCc---CeE----eCCCCEEEcCCCCcEe
Confidence 47899999863 222 2234667899997654
No 27
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=26.14 E-value=48 Score=26.65 Aligned_cols=46 Identities=17% Similarity=0.473 Sum_probs=34.0
Q ss_pred CcccCCCCCCCCCCceeeeecccCCCCCcchhhhhccccccCcccccccC
Q 021974 35 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPV 84 (304)
Q Consensus 35 pe~~l~CPRC~S~nTKFcYyNNys~~QPRhfCksCrRYWT~GGtLRnVPV 84 (304)
......|-.|....|-- .-. -+..+.+|-+|.-||-.-|..|-+.+
T Consensus 56 ~~~~~~C~~C~t~~tp~--WRr--~~~g~~lCNaCgl~~~~~~~~rp~~~ 101 (115)
T 4hc9_A 56 RRAGTSCANCQTTTTTL--WRR--NANGDPVCNACGLYYKLHNINRPLTM 101 (115)
T ss_dssp CCTTCCCTTTCCSCCSS--CEE--CTTSCEECHHHHHHHHHHSSCCCGGG
T ss_pred ccccccCCCcCCCCcce--eEE--CCCCCCcchHHHHHHHHhCCCCCccc
Confidence 34578999999988742 111 12336899999999999999887655
No 28
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=25.51 E-value=24 Score=24.23 Aligned_cols=40 Identities=18% Similarity=0.538 Sum_probs=27.9
Q ss_pred CCCCCCCCCCceeeeecccCCCCCcchhhhhccccccCcccccc
Q 021974 39 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNV 82 (304)
Q Consensus 39 l~CPRC~S~nTKFcYyNNys~~QPRhfCksCrRYWT~GGtLRnV 82 (304)
..|-.|..+.|-. +-.- .....+|-+|.-||-..|+.|-+
T Consensus 2 ~~C~~C~tt~Tp~--WR~g--p~G~~LCNaCGl~~k~~~~~RP~ 41 (43)
T 2vut_I 2 TTCTNCFTQTTPL--WRRN--PEGQPLCNACGLFLKLHGVVRPL 41 (43)
T ss_dssp CCCSSSCCCCCSC--CEEC--TTSCEECHHHHHHHHHHSSCCCC
T ss_pred CcCCccCCCCCCc--cccC--CCCCcccHHHHHHHHHhCCCCCC
Confidence 4678888877642 2211 12238999999999999998754
No 29
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=24.33 E-value=22 Score=26.39 Aligned_cols=30 Identities=27% Similarity=0.648 Sum_probs=19.5
Q ss_pred ccCCCCCCCCCCceeeeecccCCCCCcchhhhhcccc
Q 021974 37 QALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYW 73 (304)
Q Consensus 37 ~~l~CPRC~S~nTKFcYyNNys~~QPRhfCksCrRYW 73 (304)
+.+.||.|... .-| ........|+.|++-+
T Consensus 7 ~iL~CP~ck~~---L~~----~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 7 EILVCPLCKGP---LVF----DKSKDELICKGDRLAF 36 (68)
T ss_dssp EECBCTTTCCB---CEE----ETTTTEEEETTTTEEE
T ss_pred hheECCCCCCc---CeE----eCCCCEEEcCCCCcEe
Confidence 46889999863 222 2235667899997654
No 30
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=22.92 E-value=23 Score=26.45 Aligned_cols=31 Identities=23% Similarity=0.566 Sum_probs=21.0
Q ss_pred ccCCCCCCCCCCceeeeecccCCCCCcchhhhhccccc
Q 021974 37 QALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWT 74 (304)
Q Consensus 37 ~~l~CPRC~S~nTKFcYyNNys~~QPRhfCksCrRYWT 74 (304)
+.+.||.|... .-| ........|+.|++-+-
T Consensus 7 ~iL~CP~ck~~---L~~----~~~~~~LiC~~cg~~YP 37 (70)
T 2js4_A 7 DILVCPVCKGR---LEF----QRAQAELVCNADRLAFP 37 (70)
T ss_dssp CCCBCTTTCCB---EEE----ETTTTEEEETTTTEEEE
T ss_pred hheECCCCCCc---CEE----eCCCCEEEcCCCCceec
Confidence 47899999983 222 22356688999987553
No 31
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=22.06 E-value=34 Score=24.92 Aligned_cols=25 Identities=28% Similarity=0.821 Sum_probs=20.4
Q ss_pred cccCCCCCCCCCCceeeeecccCCCCCcchhhhhccc
Q 021974 36 EQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRY 72 (304)
Q Consensus 36 e~~l~CPRC~S~nTKFcYyNNys~~QPRhfCksCrRY 72 (304)
.....||.|... | .|.+.|.+|.-|
T Consensus 28 p~l~~c~~cG~~--~----------~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 28 PNLTECPQCHGK--K----------LSHHICPNCGYY 52 (60)
T ss_dssp CCCEECTTTCCE--E----------CTTBCCTTTCBS
T ss_pred CCceECCCCCCE--e----------CCceEcCCCCcC
Confidence 347789999875 4 799999999966
No 32
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=21.88 E-value=58 Score=23.27 Aligned_cols=42 Identities=26% Similarity=0.502 Sum_probs=28.6
Q ss_pred ccCCCCCCCCCCceeeeecccCCCC---CcchhhhhccccccCcc
Q 021974 37 QALKCPRCDSTNTKFCYYNNYSLSQ---PRYFCKSCRRYWTKGGT 78 (304)
Q Consensus 37 ~~l~CPRC~S~nTKFcYyNNys~~Q---PRhfCksCrRYWT~GGt 78 (304)
...+||.|...-.|----|.-.-.. --+||-.|.+-|..-|.
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~~ 49 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGS 49 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGGT
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCCC
Confidence 3578999988877765444333332 35789999988876654
No 33
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=21.72 E-value=70 Score=24.79 Aligned_cols=41 Identities=15% Similarity=0.327 Sum_probs=29.6
Q ss_pred CCCcccCCCCCCCCCCceeeeecccCCCCCcchhhhhccccc
Q 021974 33 PQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWT 74 (304)
Q Consensus 33 p~pe~~l~CPRC~S~nTKFcYyNNys~~QPRhfCksCrRYWT 74 (304)
++.+..-.||.|+..++=-|-..- ...-...-|+.|...+.
T Consensus 18 ~~L~t~F~CPfCnh~~sV~vkidk-~~~~g~l~C~~Cg~~~~ 58 (85)
T 1wii_A 18 GTLETQFTCPFCNHEKSCDVKMDR-ARNTGVISCTVCLEEFQ 58 (85)
T ss_dssp CCCSSCCCCTTTCCSSCEEEEEET-TTTEEEEEESSSCCEEE
T ss_pred CCCCCeEcCCCCCCCCeEEEEEEc-cCCEEEEEcccCCCeEE
Confidence 445568899999999877666643 23356788999987664
No 34
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=20.62 E-value=63 Score=27.59 Aligned_cols=33 Identities=24% Similarity=0.610 Sum_probs=25.6
Q ss_pred cCCCCCCCCCCceeeeecccCCCCCcchhhhhccccccCcc
Q 021974 38 ALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGT 78 (304)
Q Consensus 38 ~l~CPRC~S~nTKFcYyNNys~~QPRhfCksCrRYWT~GGt 78 (304)
..+||.|.|..|-. ...-+.|..|.-=|+....
T Consensus 27 lP~CP~C~seytYe--------Dg~l~vCPeC~hEW~~~~~ 59 (138)
T 2akl_A 27 LPPCPQCNSEYTYE--------DGALLVCPECAHEWSPNEA 59 (138)
T ss_dssp SCCCTTTCCCCCEE--------CSSSEEETTTTEEECTTTT
T ss_pred CCCCCCCCCcceEe--------cCCeEECCccccccCCccc
Confidence 46899999987742 2566999999999975553
Done!