Query 021975
Match_columns 304
No_of_seqs 301 out of 3152
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 07:04:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11088 rrmA 23S rRNA methylt 99.9 1.1E-24 2.4E-29 193.9 15.5 178 60-277 2-184 (272)
2 COG2226 UbiE Methylase involve 99.9 1.2E-24 2.6E-29 187.0 13.2 133 128-278 28-160 (238)
3 PF01209 Ubie_methyltran: ubiE 99.9 6.1E-24 1.3E-28 184.1 13.4 133 128-278 24-157 (233)
4 PLN02233 ubiquinone biosynthes 99.9 6.9E-21 1.5E-25 168.4 15.0 119 160-278 67-186 (261)
5 KOG1540 Ubiquinone biosynthesi 99.8 9.8E-21 2.1E-25 160.3 11.0 135 128-277 77-217 (296)
6 PLN02244 tocopherol O-methyltr 99.8 8.4E-20 1.8E-24 167.4 17.2 110 165-277 117-226 (340)
7 PF08241 Methyltransf_11: Meth 99.8 5E-20 1.1E-24 137.0 11.3 95 171-272 1-95 (95)
8 COG2227 UbiG 2-polyprenyl-3-me 99.8 1.4E-20 3.1E-25 159.3 8.7 107 165-277 58-164 (243)
9 PLN02396 hexaprenyldihydroxybe 99.8 1.6E-19 3.4E-24 163.2 12.5 108 166-277 131-238 (322)
10 PF13847 Methyltransf_31: Meth 99.8 1.8E-18 3.8E-23 140.8 13.8 107 166-276 3-112 (152)
11 PF12847 Methyltransf_18: Meth 99.8 1E-18 2.2E-23 134.4 10.8 107 166-275 1-112 (112)
12 TIGR02752 MenG_heptapren 2-hep 99.8 8.8E-18 1.9E-22 146.0 16.8 119 156-277 35-154 (231)
13 PRK14103 trans-aconitate 2-met 99.8 1.5E-18 3.2E-23 153.2 11.9 109 157-276 20-128 (255)
14 PTZ00098 phosphoethanolamine N 99.8 5.3E-18 1.1E-22 150.1 15.2 134 135-277 24-159 (263)
15 PRK11036 putative S-adenosyl-L 99.8 3.1E-18 6.8E-23 151.1 13.7 109 165-277 43-152 (255)
16 PRK10258 biotin biosynthesis p 99.8 9.2E-18 2E-22 147.8 14.3 113 155-277 31-143 (251)
17 KOG1270 Methyltransferases [Co 99.8 2.6E-18 5.6E-23 146.5 8.4 105 167-277 90-198 (282)
18 PRK15068 tRNA mo(5)U34 methylt 99.8 2.2E-17 4.7E-22 150.1 14.9 118 156-277 112-229 (322)
19 PRK05785 hypothetical protein; 99.7 1.9E-17 4.2E-22 143.3 12.8 89 167-267 52-140 (226)
20 PRK11207 tellurite resistance 99.7 5.5E-17 1.2E-21 137.7 14.6 113 158-276 22-136 (197)
21 PRK15451 tRNA cmo(5)U34 methyl 99.7 1.2E-16 2.7E-21 140.3 17.2 126 148-277 36-167 (247)
22 COG2230 Cfa Cyclopropane fatty 99.7 1E-16 2.2E-21 140.4 16.2 119 155-279 61-181 (283)
23 TIGR00452 methyltransferase, p 99.7 5.4E-17 1.2E-21 146.2 14.8 116 157-276 112-227 (314)
24 PLN02336 phosphoethanolamine N 99.7 8.1E-17 1.8E-21 154.4 16.5 119 154-277 254-372 (475)
25 TIGR00477 tehB tellurite resis 99.7 5.8E-17 1.3E-21 137.3 13.0 114 157-277 21-136 (195)
26 PRK01683 trans-aconitate 2-met 99.7 3.8E-17 8.2E-22 144.5 12.4 112 156-276 21-132 (258)
27 PRK08317 hypothetical protein; 99.7 1.6E-16 3.4E-21 138.2 15.7 117 156-276 9-126 (241)
28 PF13489 Methyltransf_23: Meth 99.7 2.9E-17 6.2E-22 134.2 10.2 107 157-278 12-119 (161)
29 KOG4300 Predicted methyltransf 99.7 4.9E-17 1.1E-21 133.8 11.1 118 156-277 66-185 (252)
30 PRK11873 arsM arsenite S-adeno 99.7 1.5E-16 3.3E-21 141.7 14.6 111 164-277 75-186 (272)
31 smart00828 PKS_MT Methyltransf 99.7 1.3E-16 2.7E-21 138.1 13.5 107 168-277 1-107 (224)
32 TIGR00740 methyltransferase, p 99.7 2.5E-16 5.5E-21 137.7 15.4 108 166-277 53-164 (239)
33 TIGR02072 BioC biotin biosynth 99.7 2E-16 4.3E-21 137.7 14.3 105 166-277 34-138 (240)
34 PF02353 CMAS: Mycolic acid cy 99.7 1.4E-16 3.1E-21 141.1 13.4 117 155-277 51-169 (273)
35 PF13649 Methyltransf_25: Meth 99.7 6.5E-17 1.4E-21 122.3 7.9 95 170-268 1-101 (101)
36 PLN02490 MPBQ/MSBQ methyltrans 99.7 4.5E-16 9.8E-21 141.3 14.3 106 165-276 112-217 (340)
37 PF08242 Methyltransf_12: Meth 99.7 7.1E-18 1.5E-22 127.1 1.9 97 171-270 1-99 (99)
38 PRK00107 gidB 16S rRNA methylt 99.7 1.6E-15 3.4E-20 127.2 15.3 103 167-277 46-148 (187)
39 PRK00216 ubiE ubiquinone/menaq 99.7 2.9E-15 6.4E-20 130.4 16.4 119 157-277 42-161 (239)
40 PF08003 Methyltransf_9: Prote 99.7 9.5E-16 2E-20 134.5 13.0 118 156-277 105-222 (315)
41 PRK12335 tellurite resistance 99.7 1.7E-15 3.6E-20 136.0 14.2 104 166-276 120-225 (287)
42 TIGR02469 CbiT precorrin-6Y C5 99.7 3.9E-15 8.4E-20 116.2 14.4 114 156-275 9-123 (124)
43 TIGR03587 Pse_Me-ase pseudamin 99.7 2.5E-15 5.3E-20 128.0 14.1 101 166-277 43-145 (204)
44 PRK06922 hypothetical protein; 99.6 2.1E-15 4.5E-20 145.1 13.6 108 165-276 417-539 (677)
45 TIGR03840 TMPT_Se_Te thiopurin 99.6 8.1E-15 1.8E-19 125.5 15.3 111 165-277 33-155 (213)
46 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 7.9E-15 1.7E-19 126.3 15.4 115 158-277 31-146 (223)
47 PF03848 TehB: Tellurite resis 99.6 7.2E-15 1.6E-19 122.7 14.3 112 159-277 23-136 (192)
48 TIGR00138 gidB 16S rRNA methyl 99.6 6.8E-15 1.5E-19 123.0 14.0 101 166-274 42-142 (181)
49 PRK13944 protein-L-isoaspartat 99.6 9E-15 1.9E-19 124.9 15.1 114 154-275 60-174 (205)
50 PRK00121 trmB tRNA (guanine-N( 99.6 3.5E-15 7.6E-20 127.1 12.0 109 166-277 40-159 (202)
51 TIGR02716 C20_methyl_CrtF C-20 99.6 1.7E-14 3.7E-19 130.7 16.1 118 156-278 139-258 (306)
52 PF05401 NodS: Nodulation prot 99.6 7.3E-15 1.6E-19 121.5 12.4 110 159-276 36-148 (201)
53 COG4106 Tam Trans-aconitate me 99.6 4E-15 8.7E-20 123.5 9.4 111 158-277 22-132 (257)
54 TIGR00537 hemK_rel_arch HemK-r 99.6 2.5E-14 5.5E-19 119.5 14.3 113 157-277 10-143 (179)
55 PLN03075 nicotianamine synthas 99.6 2.7E-14 5.9E-19 126.6 14.9 107 166-275 123-234 (296)
56 PF05175 MTS: Methyltransferas 99.6 3.8E-14 8.2E-19 117.5 14.9 119 154-276 19-142 (170)
57 PRK06202 hypothetical protein; 99.6 1.7E-14 3.7E-19 125.5 13.2 107 163-277 57-169 (232)
58 smart00138 MeTrc Methyltransfe 99.6 1.4E-14 3.1E-19 128.2 12.7 110 166-275 99-243 (264)
59 PRK11705 cyclopropane fatty ac 99.6 2E-14 4.2E-19 133.6 14.1 112 156-277 157-270 (383)
60 PRK13942 protein-L-isoaspartat 99.6 4.2E-14 9.2E-19 121.3 14.7 113 153-274 63-176 (212)
61 PRK05134 bifunctional 3-demeth 99.6 3.5E-14 7.5E-19 123.6 14.3 117 155-277 37-154 (233)
62 PLN02336 phosphoethanolamine N 99.6 2E-14 4.4E-19 137.8 13.8 114 156-276 27-144 (475)
63 PRK08287 cobalt-precorrin-6Y C 99.6 6.9E-14 1.5E-18 117.7 15.2 114 154-275 19-132 (187)
64 TIGR00091 tRNA (guanine-N(7)-) 99.6 1.4E-14 3E-19 122.6 11.0 109 166-277 16-135 (194)
65 PRK14121 tRNA (guanine-N(7)-)- 99.6 3.2E-14 6.9E-19 130.6 13.8 112 158-277 114-238 (390)
66 TIGR02021 BchM-ChlM magnesium 99.6 4.9E-14 1.1E-18 121.6 14.0 111 155-272 42-156 (219)
67 PF07021 MetW: Methionine bios 99.6 1.9E-14 4E-19 118.8 10.7 105 156-276 5-111 (193)
68 PRK13255 thiopurine S-methyltr 99.6 7.4E-14 1.6E-18 120.0 14.8 110 165-276 36-157 (218)
69 TIGR01983 UbiG ubiquinone bios 99.6 6.6E-14 1.4E-18 121.0 14.2 107 166-277 45-152 (224)
70 TIGR00080 pimt protein-L-isoas 99.6 9E-14 1.9E-18 119.6 14.5 112 154-274 65-177 (215)
71 PRK00377 cbiT cobalt-precorrin 99.5 2.6E-13 5.7E-18 115.2 15.2 118 153-275 27-146 (198)
72 PF13659 Methyltransf_26: Meth 99.5 5.1E-14 1.1E-18 109.0 9.4 106 167-275 1-116 (117)
73 PRK15001 SAM-dependent 23S rib 99.5 1.6E-13 3.5E-18 126.5 14.2 121 154-275 216-341 (378)
74 PRK11188 rrmJ 23S rRNA methylt 99.5 1.6E-13 3.5E-18 117.3 12.6 100 164-277 49-168 (209)
75 PRK09489 rsmC 16S ribosomal RN 99.5 3.9E-13 8.5E-18 123.0 15.5 116 155-276 185-305 (342)
76 TIGR02081 metW methionine bios 99.5 1.4E-13 3E-18 116.5 11.5 97 157-266 6-104 (194)
77 PRK07580 Mg-protoporphyrin IX 99.5 3.4E-13 7.3E-18 117.0 13.9 108 155-269 49-161 (230)
78 PRK07402 precorrin-6B methylas 99.5 7.4E-13 1.6E-17 112.3 15.4 119 152-277 26-145 (196)
79 PRK00312 pcm protein-L-isoaspa 99.5 7.3E-13 1.6E-17 113.7 14.8 112 153-275 65-176 (212)
80 KOG1271 Methyltransferases [Ge 99.5 3.3E-13 7.2E-18 109.2 10.4 108 168-277 69-184 (227)
81 PLN02585 magnesium protoporphy 99.5 8.3E-13 1.8E-17 119.3 13.9 113 153-271 128-247 (315)
82 PLN02232 ubiquinone biosynthes 99.5 2.6E-13 5.7E-18 111.3 9.7 85 194-278 1-85 (160)
83 COG2242 CobL Precorrin-6B meth 99.5 2.3E-12 5.1E-17 105.8 14.8 121 150-277 18-138 (187)
84 PRK04266 fibrillarin; Provisio 99.5 1.9E-12 4.1E-17 111.8 15.0 104 162-276 68-178 (226)
85 PRK14968 putative methyltransf 99.5 1.3E-12 2.8E-17 109.6 13.6 117 156-276 13-150 (188)
86 TIGR00536 hemK_fam HemK family 99.5 1.8E-12 4E-17 116.1 15.3 121 152-275 99-245 (284)
87 TIGR00406 prmA ribosomal prote 99.4 1.6E-12 3.5E-17 116.6 14.2 104 166-277 159-262 (288)
88 TIGR03438 probable methyltrans 99.4 2.7E-12 5.8E-17 116.0 15.2 110 166-277 63-180 (301)
89 PRK13256 thiopurine S-methyltr 99.4 3.3E-12 7.1E-17 109.7 14.8 110 165-276 42-165 (226)
90 TIGR01177 conserved hypothetic 99.4 2.2E-12 4.8E-17 118.0 14.7 121 152-277 168-297 (329)
91 KOG1541 Predicted protein carb 99.4 3.6E-13 7.8E-18 112.2 8.2 112 156-277 38-163 (270)
92 TIGR03533 L3_gln_methyl protei 99.4 3.5E-12 7.5E-17 114.2 15.0 107 166-275 121-252 (284)
93 COG2518 Pcm Protein-L-isoaspar 99.4 3.5E-12 7.5E-17 107.0 13.5 112 153-275 59-170 (209)
94 TIGR03534 RF_mod_PrmC protein- 99.4 4.7E-12 1E-16 111.2 15.0 117 153-274 75-217 (251)
95 PRK14967 putative methyltransf 99.4 4.2E-12 9E-17 109.9 14.4 107 164-276 34-161 (223)
96 COG2519 GCD14 tRNA(1-methylade 99.4 4.9E-12 1.1E-16 108.4 14.0 118 152-277 80-198 (256)
97 TIGR00563 rsmB ribosomal RNA s 99.4 2.6E-12 5.5E-17 121.5 13.3 128 155-284 227-378 (426)
98 PF01135 PCMT: Protein-L-isoas 99.4 1.7E-12 3.7E-17 110.6 10.1 114 153-275 59-173 (209)
99 PRK11805 N5-glutamine S-adenos 99.4 8.3E-12 1.8E-16 112.8 14.9 105 168-275 135-264 (307)
100 cd02440 AdoMet_MTases S-adenos 99.4 5E-12 1.1E-16 94.1 11.2 101 169-273 1-103 (107)
101 PRK10901 16S rRNA methyltransf 99.4 5.9E-12 1.3E-16 119.1 14.0 120 156-279 234-377 (427)
102 PRK00517 prmA ribosomal protei 99.4 4.8E-12 1E-16 111.3 12.6 99 165-277 118-216 (250)
103 PRK14901 16S rRNA methyltransf 99.4 4.8E-12 1.1E-16 119.9 13.2 123 154-279 240-389 (434)
104 PRK13943 protein-L-isoaspartat 99.4 6.7E-12 1.4E-16 113.7 13.4 112 154-274 68-180 (322)
105 COG4123 Predicted O-methyltran 99.4 4.7E-12 1E-16 109.3 11.4 118 157-276 35-172 (248)
106 PF02390 Methyltransf_4: Putat 99.4 7.6E-12 1.6E-16 105.7 11.6 101 168-276 19-135 (195)
107 PRK09328 N5-glutamine S-adenos 99.4 2.3E-11 5E-16 108.4 15.2 119 152-274 94-238 (275)
108 COG2813 RsmC 16S RNA G1207 met 99.4 1.6E-11 3.4E-16 108.3 13.4 132 152-289 144-280 (300)
109 PF05219 DREV: DREV methyltran 99.3 1.4E-11 3E-16 106.1 12.7 105 166-284 94-198 (265)
110 PF03291 Pox_MCEL: mRNA cappin 99.3 1.6E-11 3.4E-16 111.7 13.7 111 166-277 62-189 (331)
111 PF00891 Methyltransf_2: O-met 99.3 1.5E-11 3.3E-16 107.5 13.1 107 159-278 93-203 (241)
112 PF08704 GCD14: tRNA methyltra 99.3 3E-11 6.4E-16 105.1 14.3 121 150-277 24-149 (247)
113 PF05724 TPMT: Thiopurine S-me 99.3 2.4E-11 5.3E-16 104.3 12.8 119 155-276 27-157 (218)
114 PRK14903 16S rRNA methyltransf 99.3 1.7E-11 3.8E-16 115.8 12.9 126 156-284 227-376 (431)
115 TIGR00446 nop2p NOL1/NOP2/sun 99.3 1.9E-11 4.1E-16 108.4 12.2 117 160-279 65-204 (264)
116 PRK14966 unknown domain/N5-glu 99.3 4.7E-11 1E-15 110.6 14.9 115 154-274 241-381 (423)
117 PRK04457 spermidine synthase; 99.3 2.1E-11 4.5E-16 107.9 12.1 111 165-277 65-180 (262)
118 TIGR00438 rrmJ cell division p 99.3 1.8E-11 3.9E-16 103.0 11.1 108 155-276 21-148 (188)
119 KOG3010 Methyltransferase [Gen 99.3 1.2E-11 2.6E-16 104.7 9.6 104 169-277 36-140 (261)
120 PRK14904 16S rRNA methyltransf 99.3 3.8E-11 8.3E-16 114.1 13.6 121 157-281 241-384 (445)
121 PF05148 Methyltransf_8: Hypot 99.3 1.2E-11 2.6E-16 103.2 8.8 124 129-278 38-162 (219)
122 PTZ00146 fibrillarin; Provisio 99.3 9.9E-11 2.1E-15 103.7 14.8 106 163-275 129-238 (293)
123 COG0220 Predicted S-adenosylme 99.3 2.7E-11 5.8E-16 104.2 10.7 107 161-275 43-165 (227)
124 COG4976 Predicted methyltransf 99.3 1.6E-12 3.6E-17 108.9 3.1 122 145-277 105-228 (287)
125 PRK01544 bifunctional N5-gluta 99.3 6.4E-11 1.4E-15 114.0 14.2 105 167-274 139-269 (506)
126 COG2264 PrmA Ribosomal protein 99.3 4.8E-11 1E-15 105.7 12.3 116 152-277 150-266 (300)
127 PRK14902 16S rRNA methyltransf 99.3 4.7E-11 1E-15 113.5 12.9 118 156-277 240-382 (444)
128 PHA03411 putative methyltransf 99.3 8.8E-11 1.9E-15 102.9 13.0 116 147-273 47-182 (279)
129 KOG1975 mRNA cap methyltransfe 99.3 3.3E-11 7.1E-16 105.9 10.0 111 166-277 117-240 (389)
130 PLN02781 Probable caffeoyl-CoA 99.3 6.3E-11 1.4E-15 103.1 11.9 117 153-274 55-178 (234)
131 PF06325 PrmA: Ribosomal prote 99.2 4.5E-11 9.7E-16 106.8 10.8 111 155-277 152-262 (295)
132 TIGR03704 PrmC_rel_meth putati 99.2 2E-10 4.3E-15 101.0 14.4 103 167-275 87-217 (251)
133 smart00650 rADc Ribosomal RNA 99.2 1.6E-10 3.4E-15 95.6 12.8 108 157-274 4-113 (169)
134 PRK00811 spermidine synthase; 99.2 1.1E-10 2.3E-15 104.5 11.5 109 166-274 76-191 (283)
135 KOG2361 Predicted methyltransf 99.2 6.3E-11 1.4E-15 100.3 9.4 106 169-278 74-187 (264)
136 COG2890 HemK Methylase of poly 99.2 4.8E-10 1E-14 100.0 14.2 102 169-275 113-239 (280)
137 KOG3045 Predicted RNA methylas 99.2 2.1E-10 4.6E-15 97.9 11.0 123 129-278 146-268 (325)
138 PRK13168 rumA 23S rRNA m(5)U19 99.1 3.7E-10 8.1E-15 107.3 11.8 115 152-275 283-401 (443)
139 COG4122 Predicted O-methyltran 99.1 6.1E-10 1.3E-14 94.8 11.5 121 152-277 45-169 (219)
140 PRK15128 23S rRNA m(5)C1962 me 99.1 4.6E-10 1E-14 104.7 11.1 111 166-278 220-343 (396)
141 PLN02476 O-methyltransferase 99.1 1.3E-09 2.8E-14 96.4 12.8 119 153-276 105-230 (278)
142 PRK11783 rlmL 23S rRNA m(2)G24 99.1 5.6E-10 1.2E-14 111.6 11.7 110 166-277 538-659 (702)
143 PHA03412 putative methyltransf 99.1 1.2E-09 2.6E-14 93.7 12.0 113 146-269 31-158 (241)
144 PF01596 Methyltransf_3: O-met 99.1 1E-09 2.2E-14 93.3 11.2 117 155-276 34-157 (205)
145 TIGR00417 speE spermidine synt 99.1 1.4E-09 3.1E-14 96.7 12.6 109 166-274 72-186 (270)
146 PRK01581 speE spermidine synth 99.1 5.8E-10 1.3E-14 101.4 10.1 110 165-274 149-268 (374)
147 PRK03522 rumB 23S rRNA methylu 99.1 8.2E-10 1.8E-14 100.4 11.1 115 153-275 160-275 (315)
148 PF06080 DUF938: Protein of un 99.1 2E-09 4.2E-14 90.4 12.0 121 154-278 14-145 (204)
149 PRK10909 rsmD 16S rRNA m(2)G96 99.1 3.4E-09 7.3E-14 89.8 13.5 124 149-277 35-162 (199)
150 PF10294 Methyltransf_16: Puta 99.1 1.5E-09 3.3E-14 90.1 10.8 115 164-279 43-161 (173)
151 PF05891 Methyltransf_PK: AdoM 99.1 3.9E-10 8.5E-15 95.1 7.2 109 166-278 55-165 (218)
152 PLN02366 spermidine synthase 99.1 2.5E-09 5.5E-14 96.4 12.7 108 166-273 91-205 (308)
153 PRK01544 bifunctional N5-gluta 99.0 1.5E-09 3.2E-14 104.6 10.0 102 166-275 347-463 (506)
154 TIGR00479 rumA 23S rRNA (uraci 99.0 3E-09 6.5E-14 100.9 11.5 113 154-274 280-396 (431)
155 COG1041 Predicted DNA modifica 99.0 4.1E-09 8.8E-14 94.8 11.0 121 151-276 182-312 (347)
156 PRK03612 spermidine synthase; 99.0 2.5E-09 5.5E-14 103.4 10.3 109 166-274 297-415 (521)
157 PLN02589 caffeoyl-CoA O-methyl 99.0 4.6E-09 9.9E-14 91.7 10.8 117 153-274 66-190 (247)
158 COG3963 Phospholipid N-methylt 99.0 1.6E-08 3.5E-13 81.1 12.7 123 147-277 29-159 (194)
159 KOG2940 Predicted methyltransf 99.0 9.5E-10 2.1E-14 92.4 5.8 105 167-277 73-177 (325)
160 TIGR02085 meth_trns_rumB 23S r 99.0 4.7E-09 1E-13 97.6 10.6 113 155-275 222-335 (374)
161 PLN02672 methionine S-methyltr 98.9 1.3E-08 2.8E-13 104.4 14.5 110 167-276 119-280 (1082)
162 COG2263 Predicted RNA methylas 98.9 1.1E-08 2.3E-13 84.1 11.0 74 163-244 42-115 (198)
163 PF01170 UPF0020: Putative RNA 98.9 1.2E-08 2.6E-13 85.1 11.2 120 152-274 14-150 (179)
164 KOG1499 Protein arginine N-met 98.9 6.8E-09 1.5E-13 92.9 9.7 103 165-271 59-164 (346)
165 PRK00274 ksgA 16S ribosomal RN 98.9 8.7E-09 1.9E-13 91.8 10.5 87 151-245 27-113 (272)
166 PRK14896 ksgA 16S ribosomal RN 98.9 1.4E-08 3E-13 89.8 11.2 87 152-247 15-101 (258)
167 KOG1269 SAM-dependent methyltr 98.9 6.4E-09 1.4E-13 95.4 9.1 142 133-277 70-218 (364)
168 PF05185 PRMT5: PRMT5 arginine 98.9 1.8E-08 4E-13 95.3 12.4 113 156-271 172-294 (448)
169 KOG2899 Predicted methyltransf 98.9 1.1E-08 2.4E-13 86.8 9.4 106 166-273 58-208 (288)
170 PF03141 Methyltransf_29: Puta 98.9 2.1E-09 4.6E-14 100.3 5.4 115 152-278 99-223 (506)
171 PTZ00338 dimethyladenosine tra 98.9 1.9E-08 4.2E-13 90.2 10.8 87 153-245 23-109 (294)
172 TIGR00755 ksgA dimethyladenosi 98.9 5E-08 1.1E-12 86.0 13.4 85 152-245 15-102 (253)
173 PRK10611 chemotaxis methyltran 98.9 1.7E-08 3.7E-13 89.9 10.2 123 152-274 100-262 (287)
174 PRK04338 N(2),N(2)-dimethylgua 98.8 2.4E-08 5.2E-13 92.8 11.2 100 167-273 58-157 (382)
175 KOG2904 Predicted methyltransf 98.8 7.2E-08 1.6E-12 83.4 12.7 126 150-277 129-288 (328)
176 PF12147 Methyltransf_20: Puta 98.8 1.6E-07 3.4E-12 82.4 14.7 108 165-274 134-249 (311)
177 PF01739 CheR: CheR methyltran 98.8 1.9E-08 4.2E-13 84.8 8.4 109 166-274 31-175 (196)
178 KOG1661 Protein-L-isoaspartate 98.8 4.7E-08 1E-12 81.3 10.3 113 157-275 71-194 (237)
179 KOG1331 Predicted methyltransf 98.8 7.5E-09 1.6E-13 90.1 5.8 99 166-278 45-147 (293)
180 PF02475 Met_10: Met-10+ like- 98.8 2.9E-08 6.3E-13 83.9 9.2 100 165-271 100-199 (200)
181 PRK04148 hypothetical protein; 98.8 1.7E-07 3.8E-12 73.6 12.3 107 154-277 4-112 (134)
182 TIGR00095 RNA methyltransferas 98.8 1.5E-07 3.2E-12 79.3 12.7 122 151-276 33-161 (189)
183 KOG3191 Predicted N6-DNA-methy 98.7 1.3E-07 2.7E-12 77.1 10.6 112 162-278 39-172 (209)
184 PF02527 GidB: rRNA small subu 98.7 2.3E-07 5E-12 77.5 12.6 98 169-274 51-148 (184)
185 COG1092 Predicted SAM-dependen 98.7 8.4E-08 1.8E-12 88.7 10.1 114 167-282 218-344 (393)
186 TIGR02143 trmA_only tRNA (urac 98.7 9.1E-08 2E-12 88.3 9.6 113 152-275 184-312 (353)
187 KOG3178 Hydroxyindole-O-methyl 98.7 1.3E-07 2.7E-12 85.0 9.9 99 168-278 179-279 (342)
188 KOG3420 Predicted RNA methylas 98.7 4.1E-08 8.9E-13 76.9 5.9 85 157-246 39-123 (185)
189 TIGR00478 tly hemolysin TlyA f 98.7 2.5E-07 5.4E-12 79.9 11.4 92 165-274 74-171 (228)
190 KOG2915 tRNA(1-methyladenosine 98.7 7.1E-07 1.5E-11 77.2 13.8 114 154-274 93-210 (314)
191 PRK05031 tRNA (uracil-5-)-meth 98.7 1E-07 2.2E-12 88.4 9.4 113 152-275 193-321 (362)
192 PLN02823 spermine synthase 98.7 1.7E-07 3.7E-12 85.5 10.8 107 166-273 103-219 (336)
193 PRK11933 yebU rRNA (cytosine-C 98.7 2.2E-07 4.7E-12 88.4 11.6 112 163-277 110-245 (470)
194 PF02384 N6_Mtase: N-6 DNA Met 98.6 2E-07 4.4E-12 84.6 10.5 131 146-277 26-186 (311)
195 COG0421 SpeE Spermidine syntha 98.6 3E-07 6.5E-12 81.7 11.2 104 168-273 78-189 (282)
196 PRK11727 23S rRNA mA1618 methy 98.6 3.3E-07 7.2E-12 82.9 11.2 81 166-248 114-200 (321)
197 KOG1500 Protein arginine N-met 98.6 3E-07 6.6E-12 81.6 10.2 101 165-271 176-279 (517)
198 PF10672 Methyltrans_SAM: S-ad 98.6 1E-07 2.3E-12 84.8 7.3 111 166-278 123-242 (286)
199 PF03602 Cons_hypoth95: Conser 98.6 1.8E-07 4E-12 78.2 8.3 126 149-277 23-156 (183)
200 COG0500 SmtA SAM-dependent met 98.6 9.6E-07 2.1E-11 70.0 11.7 104 170-278 52-159 (257)
201 PF11968 DUF3321: Putative met 98.6 2.6E-07 5.6E-12 77.9 8.4 89 168-277 53-152 (219)
202 COG1352 CheR Methylase of chem 98.6 6.1E-07 1.3E-11 79.1 11.1 109 167-275 97-242 (268)
203 COG2520 Predicted methyltransf 98.5 9.9E-07 2.2E-11 80.0 12.0 117 154-279 178-294 (341)
204 KOG1663 O-methyltransferase [S 98.5 1.3E-06 2.8E-11 74.0 11.8 121 149-274 56-183 (237)
205 COG2265 TrmA SAM-dependent met 98.5 4.4E-07 9.6E-12 85.4 9.9 111 151-275 278-397 (432)
206 COG2521 Predicted archaeal met 98.5 1.3E-07 2.8E-12 80.0 4.9 113 161-275 129-246 (287)
207 COG0144 Sun tRNA and rRNA cyto 98.5 2E-06 4.4E-11 79.4 13.3 130 156-288 146-302 (355)
208 KOG3987 Uncharacterized conser 98.5 9.3E-08 2E-12 79.4 3.8 103 166-282 112-215 (288)
209 PRK00050 16S rRNA m(4)C1402 me 98.5 5.5E-07 1.2E-11 80.5 8.6 85 156-245 9-98 (296)
210 COG0293 FtsJ 23S rRNA methylas 98.5 1E-06 2.2E-11 74.0 9.6 110 154-277 33-162 (205)
211 PF07942 N2227: N2227-like pro 98.5 9.4E-07 2E-11 77.8 9.7 122 155-278 41-206 (270)
212 COG0030 KsgA Dimethyladenosine 98.5 1.3E-06 2.9E-11 76.2 10.3 86 152-244 16-102 (259)
213 PF01564 Spermine_synth: Sperm 98.5 9.1E-07 2E-11 77.6 9.1 110 166-275 76-192 (246)
214 KOG0820 Ribosomal RNA adenine 98.4 1.8E-06 3.9E-11 74.8 10.1 85 154-244 46-130 (315)
215 PRK00536 speE spermidine synth 98.4 2.4E-06 5.1E-11 75.2 10.8 99 166-274 72-171 (262)
216 KOG2352 Predicted spermine/spe 98.4 2.3E-06 4.9E-11 80.0 10.9 104 168-276 50-163 (482)
217 PF09243 Rsm22: Mitochondrial 98.4 3.1E-06 6.8E-11 75.4 11.3 116 157-278 24-143 (274)
218 TIGR03439 methyl_EasF probable 98.4 1.1E-05 2.3E-10 73.2 14.6 108 166-274 76-197 (319)
219 COG0742 N6-adenine-specific me 98.4 6.9E-06 1.5E-10 68.1 11.8 126 149-277 24-157 (187)
220 COG0357 GidB Predicted S-adeno 98.4 6.1E-06 1.3E-10 70.3 11.6 102 167-275 68-169 (215)
221 TIGR02987 met_A_Alw26 type II 98.4 4.3E-06 9.4E-11 81.4 12.1 129 147-278 5-200 (524)
222 PF09445 Methyltransf_15: RNA 98.4 6.5E-07 1.4E-11 73.0 5.4 72 169-244 2-76 (163)
223 PF01728 FtsJ: FtsJ-like methy 98.3 4.4E-07 9.6E-12 75.8 4.0 99 166-278 23-143 (181)
224 PF05958 tRNA_U5-meth_tr: tRNA 98.3 1.7E-06 3.7E-11 79.9 6.6 73 152-230 183-255 (352)
225 COG0116 Predicted N6-adenine-s 98.3 1.4E-05 3.1E-10 73.2 12.2 140 134-277 161-347 (381)
226 PF08123 DOT1: Histone methyla 98.3 4.5E-06 9.7E-11 71.0 8.3 116 157-274 33-158 (205)
227 COG3897 Predicted methyltransf 98.2 4.1E-06 8.8E-11 69.3 7.5 116 154-277 67-182 (218)
228 PRK11783 rlmL 23S rRNA m(2)G24 98.2 1.7E-05 3.7E-10 79.7 13.4 127 149-277 172-350 (702)
229 PRK11827 hypothetical protein; 98.2 5.6E-07 1.2E-11 60.0 1.7 46 57-111 5-50 (60)
230 KOG3115 Methyltransferase-like 98.2 5E-06 1.1E-10 69.0 7.4 105 167-276 61-185 (249)
231 TIGR00308 TRM1 tRNA(guanine-26 98.2 1.6E-05 3.5E-10 73.7 11.4 101 167-274 45-147 (374)
232 COG2835 Uncharacterized conser 98.2 9.8E-07 2.1E-11 58.2 2.2 46 57-111 5-50 (60)
233 PF13679 Methyltransf_32: Meth 98.1 1.5E-05 3.2E-10 63.8 8.9 102 165-273 24-130 (141)
234 PRK11760 putative 23S rRNA C24 98.1 2.6E-05 5.7E-10 70.4 10.4 87 165-267 210-296 (357)
235 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.1 2.4E-05 5.2E-10 70.1 10.2 123 157-282 76-227 (283)
236 PF00398 RrnaAD: Ribosomal RNA 98.1 2.6E-05 5.6E-10 69.1 10.1 105 152-266 16-123 (262)
237 COG4076 Predicted RNA methylas 98.1 1.7E-05 3.7E-10 65.2 7.5 99 167-272 33-133 (252)
238 KOG3201 Uncharacterized conser 98.1 2.4E-06 5.1E-11 68.4 2.5 136 149-284 12-150 (201)
239 PF04672 Methyltransf_19: S-ad 98.0 7E-05 1.5E-09 65.7 11.7 108 167-277 69-193 (267)
240 KOG2730 Methylase [General fun 98.0 7E-06 1.5E-10 69.0 4.7 93 149-245 76-173 (263)
241 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.0 1.2E-05 2.7E-10 70.3 6.3 110 166-277 56-202 (256)
242 PF03059 NAS: Nicotianamine sy 98.0 7.9E-05 1.7E-09 65.9 11.3 109 167-277 121-233 (276)
243 KOG1709 Guanidinoacetate methy 98.0 5.2E-05 1.1E-09 63.7 9.3 105 165-274 100-206 (271)
244 TIGR01444 fkbM_fam methyltrans 98.0 3.5E-05 7.5E-10 61.5 7.7 59 169-230 1-59 (143)
245 PF01269 Fibrillarin: Fibrilla 97.9 0.00041 8.9E-09 59.0 13.8 118 153-277 57-181 (229)
246 KOG2187 tRNA uracil-5-methyltr 97.9 1.4E-05 3E-10 75.1 5.4 115 149-275 366-491 (534)
247 TIGR00006 S-adenosyl-methyltra 97.9 7.7E-05 1.7E-09 67.0 9.9 88 154-245 8-100 (305)
248 PF06962 rRNA_methylase: Putat 97.7 0.00018 3.9E-09 57.0 7.8 83 192-278 1-96 (140)
249 PF03966 Trm112p: Trm112p-like 97.7 1.5E-05 3.3E-10 55.4 1.4 47 56-102 3-68 (68)
250 PF13578 Methyltransf_24: Meth 97.7 9.7E-06 2.1E-10 61.4 -0.0 100 171-274 1-105 (106)
251 KOG4589 Cell division protein 97.7 0.00018 3.9E-09 59.2 7.2 100 164-277 67-187 (232)
252 KOG1122 tRNA and rRNA cytosine 97.7 0.00029 6.2E-09 64.9 9.3 123 162-288 237-385 (460)
253 PF04816 DUF633: Family of unk 97.7 0.00033 7.2E-09 59.6 9.1 73 170-245 1-74 (205)
254 COG4262 Predicted spermidine s 97.6 0.00041 9E-09 62.8 9.9 105 167-276 290-409 (508)
255 COG4798 Predicted methyltransf 97.6 0.00026 5.6E-09 58.6 6.9 114 161-278 43-170 (238)
256 COG4627 Uncharacterized protei 97.5 2.9E-05 6.3E-10 61.8 0.7 58 220-277 30-89 (185)
257 PF07091 FmrO: Ribosomal RNA m 97.5 0.00034 7.4E-09 60.6 7.0 105 167-277 106-211 (251)
258 KOG4058 Uncharacterized conser 97.5 0.0013 2.9E-08 52.0 9.7 142 149-302 55-197 (199)
259 COG1189 Predicted rRNA methyla 97.5 0.0012 2.6E-08 56.6 10.2 106 156-274 69-178 (245)
260 COG2384 Predicted SAM-dependen 97.5 0.0011 2.4E-08 56.1 9.6 88 154-245 6-93 (226)
261 KOG2798 Putative trehalase [Ca 97.4 0.00085 1.8E-08 59.6 8.8 123 154-278 134-300 (369)
262 KOG2198 tRNA cytosine-5-methyl 97.3 0.0028 6E-08 57.7 10.9 140 161-303 150-326 (375)
263 PF05971 Methyltransf_10: Prot 97.3 0.002 4.3E-08 57.7 9.6 79 167-249 103-189 (299)
264 COG1889 NOP1 Fibrillarin-like 97.2 0.004 8.6E-08 52.1 10.3 116 153-278 60-184 (231)
265 PF03141 Methyltransf_29: Puta 97.2 0.00052 1.1E-08 64.8 5.8 99 166-277 365-470 (506)
266 PF01795 Methyltransf_5: MraW 97.1 0.00088 1.9E-08 60.3 5.9 85 156-244 10-100 (310)
267 PF04989 CmcI: Cephalosporin h 97.1 0.0022 4.7E-08 54.2 7.8 111 160-275 26-148 (206)
268 COG0286 HsdM Type I restrictio 97.1 0.0075 1.6E-07 58.2 12.2 147 129-277 144-329 (489)
269 PRK10742 putative methyltransf 97.0 0.0049 1.1E-07 53.6 8.9 118 156-277 76-222 (250)
270 KOG1099 SAM-dependent methyltr 97.0 0.0018 3.9E-08 55.1 5.7 96 167-276 42-165 (294)
271 COG0275 Predicted S-adenosylme 96.8 0.0093 2E-07 53.1 9.6 87 154-244 11-103 (314)
272 PF11599 AviRa: RRNA methyltra 96.8 0.023 5E-07 48.1 10.9 121 156-277 41-217 (246)
273 KOG2793 Putative N2,N2-dimethy 96.7 0.02 4.3E-07 49.9 10.3 111 166-278 86-203 (248)
274 PF01861 DUF43: Protein of unk 96.7 0.087 1.9E-06 45.6 13.8 105 165-277 43-151 (243)
275 COG5459 Predicted rRNA methyla 96.5 0.012 2.6E-07 53.3 8.2 112 163-278 110-229 (484)
276 PLN02668 indole-3-acetate carb 96.5 0.013 2.8E-07 54.5 8.7 112 167-278 64-241 (386)
277 PF07757 AdoMet_MTase: Predict 96.4 0.0037 8.1E-08 46.9 3.6 32 166-199 58-89 (112)
278 PRK09424 pntA NAD(P) transhydr 96.4 0.042 9.1E-07 53.1 11.5 100 165-275 163-286 (509)
279 COG1064 AdhP Zn-dependent alco 96.2 0.038 8.2E-07 50.4 9.7 97 163-276 163-261 (339)
280 PF04445 SAM_MT: Putative SAM- 96.2 0.022 4.7E-07 49.2 7.6 117 157-277 64-209 (234)
281 cd08283 FDH_like_1 Glutathione 96.0 0.096 2.1E-06 48.9 11.9 105 162-275 180-307 (386)
282 PF03269 DUF268: Caenorhabditi 96.0 0.0054 1.2E-07 49.5 2.9 45 235-279 61-116 (177)
283 PF03492 Methyltransf_7: SAM d 95.8 0.068 1.5E-06 49.1 9.5 111 166-279 16-188 (334)
284 PF02005 TRM: N2,N2-dimethylgu 95.7 0.05 1.1E-06 50.7 8.4 102 167-274 50-154 (377)
285 COG1063 Tdh Threonine dehydrog 95.7 0.13 2.8E-06 47.5 11.2 99 166-279 168-274 (350)
286 PRK11524 putative methyltransf 95.7 0.048 1E-06 48.9 7.9 59 151-212 194-252 (284)
287 KOG1562 Spermidine synthase [A 95.7 0.032 6.9E-07 49.5 6.4 105 165-274 120-236 (337)
288 PRK00420 hypothetical protein; 95.7 0.0066 1.4E-07 46.1 1.9 32 60-101 23-54 (112)
289 PHA01634 hypothetical protein 95.6 0.089 1.9E-06 40.9 7.7 48 166-214 28-75 (156)
290 PF02636 Methyltransf_28: Puta 95.5 0.036 7.8E-07 48.7 6.5 46 167-212 19-72 (252)
291 COG1867 TRM1 N2,N2-dimethylgua 95.5 0.16 3.4E-06 46.6 10.5 101 167-274 53-154 (380)
292 KOG0024 Sorbitol dehydrogenase 95.5 0.16 3.5E-06 45.8 10.3 102 164-278 167-277 (354)
293 PF01555 N6_N4_Mtase: DNA meth 95.5 0.054 1.2E-06 46.1 7.3 57 149-208 175-231 (231)
294 PF13719 zinc_ribbon_5: zinc-r 95.4 0.0086 1.9E-07 36.1 1.4 35 60-98 2-36 (37)
295 PF14803 Nudix_N_2: Nudix N-te 95.4 0.0095 2.1E-07 35.1 1.4 30 62-96 2-31 (34)
296 PRK13699 putative methylase; P 95.3 0.098 2.1E-06 45.3 8.3 62 149-213 147-208 (227)
297 KOG0822 Protein kinase inhibit 95.3 0.085 1.8E-06 50.4 8.1 107 167-277 368-481 (649)
298 KOG1596 Fibrillarin and relate 95.3 0.085 1.8E-06 45.5 7.4 105 163-277 153-264 (317)
299 COG4301 Uncharacterized conser 95.2 0.63 1.4E-05 40.5 12.6 111 165-277 77-196 (321)
300 TIGR01206 lysW lysine biosynth 95.2 0.027 5.9E-07 36.9 3.2 31 60-97 2-32 (54)
301 COG1645 Uncharacterized Zn-fin 94.8 0.015 3.2E-07 45.2 1.6 30 57-97 25-54 (131)
302 PF10571 UPF0547: Uncharacteri 94.8 0.017 3.8E-07 31.8 1.4 24 62-98 2-25 (26)
303 PRK00398 rpoP DNA-directed RNA 94.8 0.029 6.2E-07 35.6 2.6 31 58-97 1-31 (46)
304 COG3129 Predicted SAM-dependen 94.8 0.13 2.8E-06 44.2 7.1 98 149-249 55-165 (292)
305 KOG2920 Predicted methyltransf 94.7 0.04 8.7E-07 48.6 4.1 108 165-275 115-235 (282)
306 PHA00626 hypothetical protein 94.6 0.022 4.7E-07 37.1 1.7 33 61-97 1-33 (59)
307 PRK09880 L-idonate 5-dehydroge 94.6 0.44 9.5E-06 43.6 11.0 96 165-275 168-267 (343)
308 KOG2671 Putative RNA methylase 94.5 0.045 9.7E-07 49.5 4.0 83 158-243 200-290 (421)
309 KOG1088 Uncharacterized conser 94.5 0.018 3.9E-07 43.4 1.2 28 82-109 93-120 (124)
310 KOG1227 Putative methyltransfe 94.4 0.036 7.8E-07 49.2 3.2 103 167-277 195-300 (351)
311 KOG1501 Arginine N-methyltrans 94.4 0.093 2E-06 49.0 6.0 60 169-231 69-128 (636)
312 cd08254 hydroxyacyl_CoA_DH 6-h 94.4 0.68 1.5E-05 41.8 11.7 95 164-275 163-264 (338)
313 PF13717 zinc_ribbon_4: zinc-r 94.3 0.027 5.8E-07 33.7 1.6 34 60-97 2-35 (36)
314 PF08271 TF_Zn_Ribbon: TFIIB z 94.3 0.031 6.7E-07 34.9 1.8 29 61-97 1-29 (43)
315 cd00315 Cyt_C5_DNA_methylase C 94.1 0.17 3.6E-06 45.2 6.9 68 169-246 2-71 (275)
316 COG3510 CmcI Cephalosporin hyd 94.1 0.38 8.2E-06 40.2 8.3 111 159-277 62-183 (237)
317 PRK09678 DNA-binding transcrip 94.1 0.032 6.9E-07 38.9 1.7 50 60-110 1-52 (72)
318 COG1565 Uncharacterized conser 94.0 0.33 7.3E-06 44.5 8.5 50 164-213 75-132 (370)
319 PF08274 PhnA_Zn_Ribbon: PhnA 94.0 0.032 7E-07 31.8 1.3 27 61-97 3-29 (30)
320 KOG2539 Mitochondrial/chloropl 93.9 0.11 2.3E-06 49.0 5.4 110 165-277 199-318 (491)
321 COG1997 RPL43A Ribosomal prote 93.9 0.037 8.1E-07 39.6 1.7 31 59-98 34-64 (89)
322 PF09862 DUF2089: Protein of u 93.8 0.029 6.2E-07 42.7 1.2 22 63-97 1-22 (113)
323 cd08237 ribitol-5-phosphate_DH 93.3 0.78 1.7E-05 42.0 10.1 95 165-276 162-258 (341)
324 TIGR00561 pntA NAD(P) transhyd 93.3 0.4 8.7E-06 46.4 8.3 97 165-273 162-283 (511)
325 PRK10220 hypothetical protein; 93.2 0.07 1.5E-06 39.9 2.4 34 58-101 1-34 (111)
326 PF09538 FYDLN_acid: Protein o 93.2 0.052 1.1E-06 41.1 1.7 31 60-100 9-39 (108)
327 PF09297 zf-NADH-PPase: NADH p 93.2 0.069 1.5E-06 30.9 1.9 27 62-97 5-31 (32)
328 COG1198 PriA Primosomal protei 93.0 1.5 3.2E-05 44.4 12.0 106 169-277 485-603 (730)
329 PRK00432 30S ribosomal protein 92.8 0.072 1.6E-06 34.4 1.7 33 55-97 15-47 (50)
330 PF00107 ADH_zinc_N: Zinc-bind 92.7 0.61 1.3E-05 35.9 7.3 86 176-277 1-92 (130)
331 PF06859 Bin3: Bicoid-interact 92.6 0.055 1.2E-06 40.9 1.2 38 237-274 1-44 (110)
332 PF08792 A2L_zn_ribbon: A2L zi 92.6 0.11 2.4E-06 30.4 2.2 30 59-98 2-32 (33)
333 KOG2651 rRNA adenine N-6-methy 92.6 0.43 9.4E-06 43.9 6.9 43 165-208 152-194 (476)
334 COG1656 Uncharacterized conser 92.5 0.055 1.2E-06 43.8 1.1 42 57-98 94-141 (165)
335 PF11312 DUF3115: Protein of u 92.5 0.44 9.6E-06 42.9 6.9 110 167-276 87-244 (315)
336 TIGR02098 MJ0042_CXXC MJ0042 f 92.5 0.077 1.7E-06 32.0 1.5 34 60-97 2-35 (38)
337 PF11781 RRN7: RNA polymerase 92.4 0.072 1.6E-06 31.8 1.2 28 59-96 7-34 (36)
338 PF13240 zinc_ribbon_2: zinc-r 92.3 0.061 1.3E-06 28.7 0.8 22 62-96 1-22 (23)
339 KOG2352 Predicted spermine/spe 92.2 0.13 2.9E-06 48.7 3.4 115 166-284 295-426 (482)
340 TIGR02822 adh_fam_2 zinc-bindi 92.2 2.5 5.4E-05 38.5 11.7 94 162-275 161-255 (329)
341 PF14446 Prok-RING_1: Prokaryo 92.2 0.089 1.9E-06 34.3 1.5 26 61-97 6-31 (54)
342 COG1568 Predicted methyltransf 92.2 0.8 1.7E-05 40.5 7.8 105 165-275 151-261 (354)
343 PF01096 TFIIS_C: Transcriptio 92.0 0.072 1.6E-06 32.5 0.9 37 61-97 1-38 (39)
344 PTZ00357 methyltransferase; Pr 91.9 1.2 2.5E-05 44.4 9.3 100 169-269 703-830 (1072)
345 KOG1253 tRNA methyltransferase 91.8 0.23 5.1E-06 47.1 4.5 104 165-274 108-216 (525)
346 TIGR00027 mthyl_TIGR00027 meth 91.8 5.3 0.00012 35.3 12.9 117 157-276 73-199 (260)
347 PF01927 Mut7-C: Mut7-C RNAse 91.8 0.095 2.1E-06 42.1 1.7 41 60-100 91-137 (147)
348 TIGR00497 hsdM type I restrict 91.8 3 6.6E-05 40.5 12.4 127 148-275 197-356 (501)
349 cd08230 glucose_DH Glucose deh 91.8 1.1 2.5E-05 41.1 9.1 95 165-276 171-271 (355)
350 PF14353 CpXC: CpXC protein 91.7 0.1 2.3E-06 40.8 1.8 41 61-101 2-52 (128)
351 TIGR00686 phnA alkylphosphonat 91.6 0.13 2.8E-06 38.5 2.1 31 61-101 3-33 (109)
352 smart00661 RPOL9 RNA polymeras 91.6 0.2 4.4E-06 32.3 2.8 34 62-102 2-35 (52)
353 PF07191 zinc-ribbons_6: zinc- 91.5 0.11 2.4E-06 35.8 1.5 26 61-97 2-27 (70)
354 PF07279 DUF1442: Protein of u 91.5 3.8 8.2E-05 34.9 11.0 114 156-277 31-151 (218)
355 cd05188 MDR Medium chain reduc 91.5 3 6.6E-05 35.9 11.1 97 165-277 133-235 (271)
356 TIGR02300 FYDLN_acid conserved 91.4 0.12 2.7E-06 39.8 1.8 31 60-100 9-39 (129)
357 TIGR00595 priA primosomal prot 91.4 5 0.00011 39.1 13.4 31 169-199 263-293 (505)
358 TIGR01202 bchC 2-desacetyl-2-h 91.4 1.5 3.2E-05 39.6 9.2 89 166-276 144-233 (308)
359 PRK00464 nrdR transcriptional 91.2 0.13 2.8E-06 41.6 1.8 40 61-100 1-41 (154)
360 PF05711 TylF: Macrocin-O-meth 91.1 0.46 9.9E-06 41.6 5.3 114 161-277 69-215 (248)
361 PF03119 DNA_ligase_ZBD: NAD-d 91.1 0.16 3.4E-06 28.5 1.6 22 62-92 1-22 (28)
362 PRK05580 primosome assembly pr 90.6 4.7 0.0001 40.8 12.7 31 169-199 431-461 (679)
363 PF03514 GRAS: GRAS domain fam 90.5 2.9 6.3E-05 39.0 10.4 120 156-276 100-245 (374)
364 PF06677 Auto_anti-p27: Sjogre 90.5 0.19 4.2E-06 30.9 1.7 27 58-94 15-41 (41)
365 PF13248 zf-ribbon_3: zinc-rib 90.5 0.12 2.7E-06 28.3 0.8 23 61-96 3-25 (26)
366 PRK01747 mnmC bifunctional tRN 90.4 1 2.3E-05 45.3 8.0 108 166-274 57-206 (662)
367 TIGR03366 HpnZ_proposed putati 90.2 3.5 7.5E-05 36.5 10.4 95 165-275 119-219 (280)
368 smart00440 ZnF_C2C2 C2C2 Zinc 90.0 0.18 3.9E-06 30.9 1.3 37 61-97 1-38 (40)
369 PF11899 DUF3419: Protein of u 89.9 0.62 1.3E-05 43.5 5.3 67 218-284 274-344 (380)
370 smart00659 RPOLCX RNA polymera 89.8 0.29 6.4E-06 30.6 2.2 28 60-97 2-29 (44)
371 TIGR03451 mycoS_dep_FDH mycoth 89.5 6.5 0.00014 36.1 12.0 97 164-275 174-277 (358)
372 PF14205 Cys_rich_KTR: Cystein 89.5 0.28 6E-06 31.9 1.9 36 59-97 3-38 (55)
373 COG1779 C4-type Zn-finger prot 89.4 0.16 3.4E-06 42.4 0.9 41 57-97 11-53 (201)
374 PRK11524 putative methyltransf 89.4 0.29 6.2E-06 43.9 2.7 56 219-274 7-80 (284)
375 TIGR03655 anti_R_Lar restricti 89.4 0.3 6.5E-06 31.9 2.1 38 60-99 1-38 (53)
376 PF01780 Ribosomal_L37ae: Ribo 89.2 0.18 3.9E-06 36.6 1.0 30 59-97 34-63 (90)
377 PF02150 RNA_POL_M_15KD: RNA p 89.2 0.21 4.6E-06 29.6 1.2 32 61-100 2-33 (35)
378 cd08281 liver_ADH_like1 Zinc-d 89.0 5.8 0.00013 36.7 11.3 98 163-275 188-291 (371)
379 cd00401 AdoHcyase S-adenosyl-L 89.0 4.5 9.8E-05 38.3 10.5 90 165-275 200-290 (413)
380 COG3877 Uncharacterized protei 89.0 0.2 4.3E-06 37.2 1.1 26 59-97 5-30 (122)
381 PRK14873 primosome assembly pr 88.9 5.2 0.00011 40.3 11.4 95 168-274 431-536 (665)
382 PF05206 TRM13: Methyltransfer 88.9 1.6 3.4E-05 38.6 6.9 74 156-232 8-86 (259)
383 COG0686 Ald Alanine dehydrogen 88.6 1.7 3.7E-05 39.2 6.9 100 166-273 167-267 (371)
384 PF04072 LCM: Leucine carboxyl 88.5 1.4 3E-05 36.6 6.1 95 156-251 67-171 (183)
385 cd08232 idonate-5-DH L-idonate 88.5 5.7 0.00012 35.9 10.8 95 166-275 165-263 (339)
386 TIGR02825 B4_12hDH leukotriene 88.3 11 0.00023 34.0 12.3 96 162-274 134-237 (325)
387 COG4306 Uncharacterized protei 88.0 0.19 4.2E-06 38.4 0.5 45 57-101 36-82 (160)
388 PF09986 DUF2225: Uncharacteri 87.8 0.3 6.5E-06 41.9 1.7 40 60-99 5-60 (214)
389 smart00834 CxxC_CXXC_SSSS Puta 87.8 0.38 8.3E-06 29.2 1.7 33 57-95 2-34 (41)
390 PF05050 Methyltransf_21: Meth 87.8 1.7 3.7E-05 34.8 6.1 42 172-213 1-48 (167)
391 KOG1098 Putative SAM-dependent 87.7 1.3 2.7E-05 43.5 5.9 105 155-274 33-158 (780)
392 COG2933 Predicted SAM-dependen 87.6 2.6 5.7E-05 37.1 7.2 86 165-266 210-295 (358)
393 COG3677 Transposase and inacti 87.6 0.32 6.9E-06 38.2 1.6 41 59-103 29-69 (129)
394 PF02254 TrkA_N: TrkA-N domain 87.5 6.9 0.00015 29.3 9.1 87 175-276 4-98 (116)
395 PF03604 DNA_RNApol_7kD: DNA d 87.5 0.54 1.2E-05 27.3 2.1 27 61-97 1-27 (32)
396 PRK12495 hypothetical protein; 87.4 0.33 7.2E-06 41.1 1.7 31 57-98 39-69 (226)
397 COG1571 Predicted DNA-binding 87.4 0.33 7E-06 45.4 1.7 33 59-101 349-381 (421)
398 PRK05786 fabG 3-ketoacyl-(acyl 87.2 14 0.0003 31.4 11.9 104 166-276 4-137 (238)
399 cd08245 CAD Cinnamyl alcohol d 87.1 11 0.00023 33.9 11.6 97 163-275 159-257 (330)
400 COG3809 Uncharacterized protei 87.0 0.35 7.6E-06 33.8 1.3 36 60-102 1-36 (88)
401 PRK13699 putative methylase; P 86.9 0.46 9.9E-06 41.1 2.3 52 222-273 3-71 (227)
402 cd08239 THR_DH_like L-threonin 86.8 8.9 0.00019 34.7 11.0 98 162-275 159-263 (339)
403 PLN03154 putative allyl alcoho 86.4 13 0.00028 34.1 11.8 97 163-275 155-259 (348)
404 PRK07806 short chain dehydroge 86.3 14 0.0003 31.6 11.4 102 167-274 6-134 (248)
405 PLN02740 Alcohol dehydrogenase 86.3 8.6 0.00019 35.7 10.7 99 163-276 195-302 (381)
406 PF14354 Lar_restr_allev: Rest 86.1 0.54 1.2E-05 31.4 1.9 35 59-95 2-37 (61)
407 PF10354 DUF2431: Domain of un 86.0 5.5 0.00012 32.6 8.2 110 173-288 3-138 (166)
408 PTZ00255 60S ribosomal protein 85.8 0.4 8.8E-06 34.8 1.2 31 59-98 35-65 (90)
409 TIGR00244 transcriptional regu 85.7 0.47 1E-05 37.8 1.6 42 61-102 1-43 (147)
410 COG1327 Predicted transcriptio 85.6 0.42 9.2E-06 38.0 1.3 43 61-103 1-44 (156)
411 PRK12939 short chain dehydroge 85.5 7.8 0.00017 33.1 9.5 74 166-246 6-93 (250)
412 PRK06701 short chain dehydroge 85.5 9.9 0.00021 33.8 10.4 104 166-275 45-182 (290)
413 cd08234 threonine_DH_like L-th 85.3 15 0.00032 33.0 11.6 98 163-276 156-259 (334)
414 COG0287 TyrA Prephenate dehydr 85.2 4.1 8.8E-05 36.4 7.5 90 168-271 4-95 (279)
415 PF07754 DUF1610: Domain of un 85.1 0.71 1.5E-05 24.8 1.6 9 86-94 15-23 (24)
416 PF13453 zf-TFIIB: Transcripti 85.1 0.43 9.4E-06 29.3 0.9 30 62-98 1-30 (41)
417 cd08255 2-desacetyl-2-hydroxye 85.0 12 0.00026 32.6 10.6 95 163-274 94-190 (277)
418 TIGR00280 L37a ribosomal prote 85.0 0.42 9.1E-06 34.8 0.9 30 59-97 34-63 (91)
419 COG1326 Uncharacterized archae 85.0 0.56 1.2E-05 38.9 1.8 37 60-99 6-42 (201)
420 COG3315 O-Methyltransferase in 84.9 11 0.00023 34.1 10.1 115 157-275 84-210 (297)
421 KOG2782 Putative SAM dependent 84.8 0.52 1.1E-05 40.2 1.5 93 154-249 31-130 (303)
422 PLN02827 Alcohol dehydrogenase 84.8 13 0.00028 34.6 11.1 96 164-274 191-295 (378)
423 PF00145 DNA_methylase: C-5 cy 84.7 1.7 3.7E-05 39.1 5.1 66 169-246 2-70 (335)
424 smart00531 TFIIE Transcription 84.7 0.41 8.9E-06 38.4 0.9 38 57-97 96-133 (147)
425 TIGR02819 fdhA_non_GSH formald 84.6 21 0.00046 33.4 12.5 104 164-276 183-301 (393)
426 cd00350 rubredoxin_like Rubred 84.6 0.71 1.5E-05 26.9 1.6 24 61-95 2-25 (33)
427 PRK05854 short chain dehydroge 84.5 20 0.00043 32.3 12.0 78 166-247 13-103 (313)
428 PRK07109 short chain dehydroge 84.4 18 0.0004 32.9 11.8 76 166-247 7-95 (334)
429 PF04606 Ogr_Delta: Ogr/Delta- 84.3 0.47 1E-05 30.1 0.8 40 62-102 1-42 (47)
430 PLN02586 probable cinnamyl alc 84.2 9.2 0.0002 35.3 9.8 96 165-275 182-279 (360)
431 PRK14892 putative transcriptio 84.0 0.74 1.6E-05 34.2 1.9 33 59-97 20-52 (99)
432 PRK03976 rpl37ae 50S ribosomal 83.8 0.48 1E-05 34.4 0.8 30 59-97 35-64 (90)
433 TIGR02818 adh_III_F_hyde S-(hy 83.7 20 0.00043 33.1 11.8 99 163-275 182-288 (368)
434 PF10237 N6-adenineMlase: Prob 83.6 18 0.00039 29.5 10.0 108 153-277 10-126 (162)
435 PRK10309 galactitol-1-phosphat 83.5 16 0.00034 33.2 11.0 98 164-276 158-262 (347)
436 KOG2078 tRNA modification enzy 83.4 0.92 2E-05 42.5 2.7 69 155-229 240-309 (495)
437 KOG2906 RNA polymerase III sub 83.4 0.63 1.4E-05 34.1 1.3 35 60-101 1-35 (105)
438 COG1592 Rubrerythrin [Energy p 83.0 0.77 1.7E-05 37.5 1.8 25 60-96 134-158 (166)
439 TIGR00518 alaDH alanine dehydr 83.0 2.9 6.4E-05 38.9 5.9 102 166-275 166-268 (370)
440 COG1594 RPB9 DNA-directed RNA 82.9 0.9 2E-05 34.7 2.1 48 50-97 62-110 (113)
441 COG1062 AdhC Zn-dependent alco 82.8 21 0.00045 32.8 10.9 103 161-278 180-289 (366)
442 COG1096 Predicted RNA-binding 82.8 0.76 1.6E-05 38.0 1.7 26 61-97 150-175 (188)
443 PRK08339 short chain dehydroge 82.7 28 0.00062 30.3 11.9 77 166-247 7-95 (263)
444 KOG3507 DNA-directed RNA polym 82.7 1.5 3.2E-05 29.0 2.6 33 55-97 15-47 (62)
445 COG2888 Predicted Zn-ribbon RN 82.5 1.1 2.4E-05 29.7 2.0 36 57-96 24-59 (61)
446 PF07282 OrfB_Zn_ribbon: Putat 82.5 0.85 1.8E-05 31.3 1.6 30 59-97 27-56 (69)
447 PRK06181 short chain dehydroge 82.4 15 0.00032 31.8 10.0 73 168-247 2-88 (263)
448 PRK07576 short chain dehydroge 82.4 17 0.00036 31.7 10.3 74 166-245 8-94 (264)
449 cd08294 leukotriene_B4_DH_like 82.3 25 0.00054 31.4 11.7 96 162-274 139-241 (329)
450 PF02153 PDH: Prephenate dehyd 82.2 3.3 7.1E-05 36.5 5.7 76 180-271 1-76 (258)
451 TIGR01384 TFS_arch transcripti 82.1 0.92 2E-05 34.0 1.9 27 62-99 2-28 (104)
452 COG1996 RPC10 DNA-directed RNA 82.1 0.98 2.1E-05 28.9 1.6 32 57-97 3-34 (49)
453 TIGR03201 dearomat_had 6-hydro 82.0 13 0.00028 33.9 9.9 99 163-276 163-274 (349)
454 PRK08265 short chain dehydroge 81.9 17 0.00036 31.6 10.1 72 166-246 5-89 (261)
455 cd08242 MDR_like Medium chain 81.9 24 0.00052 31.5 11.4 93 163-274 152-245 (319)
456 PF12760 Zn_Tnp_IS1595: Transp 81.8 1.1 2.3E-05 28.2 1.8 27 61-95 19-45 (46)
457 PRK08213 gluconate 5-dehydroge 81.7 18 0.00039 31.2 10.3 75 166-247 11-99 (259)
458 PRK09072 short chain dehydroge 81.6 15 0.00033 31.8 9.8 75 167-248 5-91 (263)
459 cd08298 CAD2 Cinnamyl alcohol 81.4 31 0.00067 30.9 12.0 92 163-274 164-256 (329)
460 TIGR00373 conserved hypothetic 81.3 0.64 1.4E-05 37.8 0.7 32 57-96 106-137 (158)
461 PRK08267 short chain dehydroge 81.2 16 0.00035 31.6 9.7 72 168-247 2-87 (260)
462 cd05278 FDH_like Formaldehyde 81.1 18 0.0004 32.6 10.5 96 164-274 165-267 (347)
463 PRK03659 glutathione-regulated 81.1 12 0.00026 37.3 9.8 90 169-277 402-501 (601)
464 PF11899 DUF3419: Protein of u 81.1 6.5 0.00014 36.8 7.4 54 156-211 25-78 (380)
465 PRK08324 short chain dehydroge 80.9 19 0.0004 36.5 11.2 103 166-275 421-558 (681)
466 COG1255 Uncharacterized protei 80.8 6.3 0.00014 30.1 5.8 90 166-277 13-105 (129)
467 PRK13394 3-hydroxybutyrate deh 80.8 22 0.00047 30.6 10.4 75 167-247 7-94 (262)
468 PRK06266 transcription initiat 80.7 0.74 1.6E-05 38.2 1.0 31 58-96 115-145 (178)
469 PRK07774 short chain dehydroge 80.5 27 0.00059 29.8 10.9 74 167-247 6-93 (250)
470 KOG2691 RNA polymerase II subu 80.5 1.3 2.9E-05 33.0 2.1 39 59-97 72-111 (113)
471 cd08300 alcohol_DH_class_III c 80.5 28 0.00061 32.0 11.6 99 163-276 183-290 (368)
472 cd08277 liver_alcohol_DH_like 80.3 30 0.00065 31.8 11.7 98 163-275 181-287 (365)
473 PRK10458 DNA cytosine methylas 80.2 13 0.00028 35.8 9.3 72 154-231 69-146 (467)
474 smart00778 Prim_Zn_Ribbon Zinc 80.2 1.7 3.7E-05 26.1 2.1 30 61-95 4-33 (37)
475 TIGR00675 dcm DNA-methyltransf 80.1 4 8.7E-05 37.1 5.6 66 170-245 1-67 (315)
476 cd08285 NADP_ADH NADP(H)-depen 80.0 27 0.00058 31.8 11.2 97 164-275 164-267 (351)
477 PF09723 Zn-ribbon_8: Zinc rib 80.0 1.3 2.8E-05 27.4 1.6 33 57-95 2-34 (42)
478 KOG3924 Putative protein methy 79.9 6.3 0.00014 36.7 6.7 120 157-278 183-312 (419)
479 PLN02178 cinnamyl-alcohol dehy 79.8 11 0.00023 35.1 8.5 95 165-275 177-274 (375)
480 cd05285 sorbitol_DH Sorbitol d 79.7 37 0.0008 30.7 12.0 98 162-275 158-266 (343)
481 TIGR03831 YgiT_finger YgiT-typ 79.7 0.91 2E-05 28.2 0.9 14 86-99 31-44 (46)
482 COG0777 AccD Acetyl-CoA carbox 79.6 0.86 1.9E-05 40.0 1.0 36 57-100 25-60 (294)
483 cd08261 Zn_ADH7 Alcohol dehydr 79.5 28 0.00061 31.3 11.1 96 163-274 156-258 (337)
484 COG0863 DNA modification methy 79.5 9.2 0.0002 34.0 7.8 60 151-213 208-267 (302)
485 PRK07231 fabG 3-ketoacyl-(acyl 79.5 29 0.00062 29.6 10.7 74 167-247 5-91 (251)
486 COG4888 Uncharacterized Zn rib 79.4 1 2.3E-05 33.2 1.2 34 58-97 20-56 (104)
487 PF12692 Methyltransf_17: S-ad 79.4 6.5 0.00014 31.5 5.8 100 167-277 29-137 (160)
488 PRK06914 short chain dehydroge 79.2 24 0.00053 30.8 10.4 76 167-246 3-90 (280)
489 PF03811 Zn_Tnp_IS1: InsA N-te 79.0 2.4 5.2E-05 25.2 2.5 31 60-94 5-36 (36)
490 COG4640 Predicted membrane pro 78.9 1 2.2E-05 41.5 1.2 29 60-101 1-29 (465)
491 PRK06940 short chain dehydroge 78.8 28 0.0006 30.6 10.6 99 168-272 3-123 (275)
492 TIGR00936 ahcY adenosylhomocys 78.8 24 0.00053 33.3 10.4 91 165-276 193-284 (406)
493 PHA02998 RNA polymerase subuni 78.6 1.2 2.7E-05 36.4 1.6 42 59-100 142-184 (195)
494 TIGR00340 zpr1_rel ZPR1-relate 78.4 1.3 2.7E-05 36.3 1.6 35 63-97 1-38 (163)
495 cd08236 sugar_DH NAD(P)-depend 78.4 41 0.00088 30.3 11.8 95 163-274 156-258 (343)
496 PRK07819 3-hydroxybutyryl-CoA 78.2 6.9 0.00015 35.0 6.5 100 168-275 6-122 (286)
497 PRK09242 tropinone reductase; 78.0 44 0.00095 28.7 11.9 78 166-247 8-98 (257)
498 PRK07502 cyclohexadienyl dehyd 77.9 13 0.00029 33.4 8.4 90 168-272 7-98 (307)
499 PRK05978 hypothetical protein; 77.8 1.5 3.3E-05 35.1 1.9 33 60-100 33-65 (148)
500 cd08295 double_bond_reductase_ 77.6 29 0.00063 31.4 10.6 97 162-274 147-251 (338)
No 1
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.92 E-value=1.1e-24 Score=193.95 Aligned_cols=178 Identities=22% Similarity=0.423 Sum_probs=127.9
Q ss_pred eeeccCCCccccccCCCCccccccccCceeeCCCCccccCCCCeeeeecccCccCccCCCccccccccCchhhHHHHHhH
Q 021975 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGW 139 (304)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~w 139 (304)
+|+||+|++++.... ..++|.++++++..++||+++++.......... ...+++..
T Consensus 2 ~~~CP~C~~~l~~~~-----------~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~--d~~~~~~a----------- 57 (272)
T PRK11088 2 SYQCPLCHQPLTLEE-----------NSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPG--DNKEMMQA----------- 57 (272)
T ss_pred cccCCCCCcchhcCC-----------CEEEcCCCCCCccccCceEEeccccccCCCCCC--cCHHHHHH-----------
Confidence 489999999996633 689999977777999999999975433221110 01112211
Q ss_pred HHhhhcCCCCCc--HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCC---CeEEEEeCCHHHHHHHHHHHHhcC
Q 021975 140 RQNFNRSGFPGP--DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY---SGVVALDFSENMLRQCYDFIKQDN 214 (304)
Q Consensus 140 ~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~---~~v~giD~s~~~~~~a~~~~~~~~ 214 (304)
++.|...+++.+ +...+.+.+.+. ....+|||+|||+|.++..+++..+. .+++|+|+|+.+++.|+++
T Consensus 58 r~~fl~~g~y~~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~----- 131 (272)
T PRK11088 58 RRAFLDAGHYQPLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR----- 131 (272)
T ss_pred HHHHHHCCChHHHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----
Confidence 334444443222 222233444433 24568999999999999999876442 3799999999999999874
Q ss_pred ccCCCCeEEEEccCCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 215 TILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 215 ~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
..++.+..+|+.++|+++++||+|++.+. ...++++.|+|||||+|++.++..
T Consensus 132 ---~~~~~~~~~d~~~lp~~~~sfD~I~~~~~-------~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 132 ---YPQVTFCVASSHRLPFADQSLDAIIRIYA-------PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred ---CCCCeEEEeecccCCCcCCceeEEEEecC-------CCCHHHHHhhccCCCEEEEEeCCC
Confidence 35788999999999999999999998754 124689999999999999988654
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.92 E-value=1.2e-24 Score=186.98 Aligned_cols=133 Identities=30% Similarity=0.451 Sum_probs=119.9
Q ss_pred CchhhHHHHHhHHHhhhcCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Q 021975 128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCY 207 (304)
Q Consensus 128 ~~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~ 207 (304)
|+++|++.++.|++.+.. .+...++.+|||+|||||.++..+++....++|+|+|+|+.|++.++
T Consensus 28 n~~~S~g~~~~Wr~~~i~---------------~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~ 92 (238)
T COG2226 28 NDLMSFGLHRLWRRALIS---------------LLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAR 92 (238)
T ss_pred cccccCcchHHHHHHHHH---------------hhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHH
Confidence 789999999999975432 33334789999999999999999999966789999999999999999
Q ss_pred HHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975 208 DFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 208 ~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
++....+. .++.|+.+|++.+||++++||+|++.+.|++++|++.+|+|+.|+|||||++++.++..+
T Consensus 93 ~k~~~~~~---~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 93 EKLKKKGV---QNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred HHhhccCc---cceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 99988762 349999999999999999999999999999999999999999999999999999998874
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.91 E-value=6.1e-24 Score=184.15 Aligned_cols=133 Identities=30% Similarity=0.542 Sum_probs=92.6
Q ss_pred CchhhHHHHHhHHHhhhcCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHH
Q 021975 128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQC 206 (304)
Q Consensus 128 ~~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a 206 (304)
|.++|++.++.|++.. .+.+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.|++.|
T Consensus 24 n~~ls~g~~~~wr~~~---------------~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a 88 (233)
T PF01209_consen 24 NDLLSFGQDRRWRRKL---------------IKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVA 88 (233)
T ss_dssp -------------SHH---------------HHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHH
T ss_pred ccccCCcHHHHHHHHH---------------HhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHH
Confidence 7788999999998743 33445567889999999999999999887 5567999999999999999
Q ss_pred HHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975 207 YDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 207 ~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
+++.+..+ ..+++++++|++++|+++++||+|++.+.|++++|+.+.++|++|+|||||++++.++..+
T Consensus 89 ~~k~~~~~---~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 89 RKKLKREG---LQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp HHHHHHTT-----SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred HHHHHhhC---CCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 99998876 2599999999999999999999999999999999999999999999999999999998874
No 4
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.86 E-value=6.9e-21 Score=168.38 Aligned_cols=119 Identities=24% Similarity=0.369 Sum_probs=101.7
Q ss_pred HhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCcc
Q 021975 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV 238 (304)
Q Consensus 160 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f 238 (304)
+.+...++.+|||+|||+|.++..+++. ++..+|+|+|+|++|++.|+++..........++.++++|++++|+++++|
T Consensus 67 ~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sf 146 (261)
T PLN02233 67 SWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYF 146 (261)
T ss_pred HHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCE
Confidence 3445556789999999999999988876 455699999999999999988654211002357999999999999999999
Q ss_pred ceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975 239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
|+|++.++++|++|+..+++++.|+|||||++++.++...
T Consensus 147 D~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 147 DAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred eEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 9999999999999999999999999999999999998764
No 5
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.84 E-value=9.8e-21 Score=160.27 Aligned_cols=135 Identities=24% Similarity=0.312 Sum_probs=120.0
Q ss_pred CchhhHHHHHhHHHhhhcCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCC------CeEEEEeCCHH
Q 021975 128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY------SGVVALDFSEN 201 (304)
Q Consensus 128 ~~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~------~~v~giD~s~~ 201 (304)
|+.++.+.++.|+..+ ...+.+.++.++||++||+|..+..+.++-.. .+|+++|+++.
T Consensus 77 ND~mSlGiHRlWKd~~---------------v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~ 141 (296)
T KOG1540|consen 77 NDAMSLGIHRLWKDMF---------------VSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPH 141 (296)
T ss_pred HHHhhcchhHHHHHHh---------------hhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHH
Confidence 7888999999998644 44677778899999999999999888887544 79999999999
Q ss_pred HHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 202 MLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 202 ~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
|+..++++.++.++.....+.|+++|++++||++.+||..++.+.|.+++++++.|+|++|+|||||+|.+.++..
T Consensus 142 mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 142 MLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred HHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 9999999987766434445999999999999999999999999999999999999999999999999999988876
No 6
>PLN02244 tocopherol O-methyltransferase
Probab=99.84 E-value=8.4e-20 Score=167.36 Aligned_cols=110 Identities=24% Similarity=0.326 Sum_probs=100.6
Q ss_pred cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (304)
.++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.++++.+..+ ...++.++++|+.++|+++++||+|++.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g--~~~~v~~~~~D~~~~~~~~~~FD~V~s~ 193 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQG--LSDKVSFQVADALNQPFEDGQFDLVWSM 193 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEcCcccCCCCCCCccEEEEC
Confidence 467899999999999999999875 4599999999999999999888776 3467999999999999999999999999
Q ss_pred chhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
.+++|++|+..+++++.++|||||+|++.++..
T Consensus 194 ~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 194 ESGEHMPDKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred CchhccCCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 999999999999999999999999999998754
No 7
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.83 E-value=5e-20 Score=136.96 Aligned_cols=95 Identities=34% Similarity=0.579 Sum_probs=84.3
Q ss_pred EEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhccC
Q 021975 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCW 250 (304)
Q Consensus 171 LDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~ 250 (304)
||+|||+|..+..+++. +..+++|+|+++.+++.++++... .++.+..+|++++|+++++||+|++..+++|+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT------STEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc------cCchheeehHHhCccccccccccccccceeec
Confidence 89999999999999999 345999999999999999998754 34669999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcccCcEEEE
Q 021975 251 PSPSNAVAEISRILRSGGVFVG 272 (304)
Q Consensus 251 ~d~~~~l~~~~r~LkpgG~lvi 272 (304)
+++..+++++.|+|||||++++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999999986
No 8
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.83 E-value=1.4e-20 Score=159.31 Aligned_cols=107 Identities=26% Similarity=0.413 Sum_probs=98.9
Q ss_pred cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (304)
.++.+|||||||.|.++..+++.|. +|+|+|+++.+++.|+......+ ..+.+.+..++++....++||+|+|.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga--~VtgiD~se~~I~~Ak~ha~e~g----v~i~y~~~~~edl~~~~~~FDvV~cm 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA--SVTGIDASEKPIEVAKLHALESG----VNIDYRQATVEDLASAGGQFDVVTCM 131 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC--eeEEecCChHHHHHHHHhhhhcc----ccccchhhhHHHHHhcCCCccEEEEh
Confidence 4688999999999999999999996 99999999999999999887766 45778888888887666899999999
Q ss_pred chhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
.||||++||..+++.+.+++||||.++++|.++
T Consensus 132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 132 EVLEHVPDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred hHHHccCCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 999999999999999999999999999999987
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.81 E-value=1.6e-19 Score=163.23 Aligned_cols=108 Identities=22% Similarity=0.314 Sum_probs=97.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (304)
++.+|||||||+|.++..+++.+. +|+|+|+++.+++.|+++.+..+ ...++.++++|++++++.+++||+|++.+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~--~V~GID~s~~~i~~Ar~~~~~~~--~~~~i~~~~~dae~l~~~~~~FD~Vi~~~ 206 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA--TVTGVDAVDKNVKIARLHADMDP--VTSTIEYLCTTAEKLADEGRKFDAVLSLE 206 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--cccceeEEecCHHHhhhccCCCCEEEEhh
Confidence 567999999999999999988765 99999999999999998766543 23579999999999888888999999999
Q ss_pred hhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 246 vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+|||+.|+..+++++.++|||||.+++.++.+
T Consensus 207 vLeHv~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 207 VIEHVANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred HHHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 99999999999999999999999999999765
No 10
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.79 E-value=1.8e-18 Score=140.78 Aligned_cols=107 Identities=22% Similarity=0.464 Sum_probs=97.1
Q ss_pred CCCeEEEEcCCccHHHHHHH-HhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--CCCCccceEE
Q 021975 166 QGGLLVDVSCGSGLFSRKFA-KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVH 242 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~-~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~ 242 (304)
++.+|||+|||+|.++..++ +.++..+++|+|+++.+++.|+++++..+ ..++.++++|+.+++ ++ +.||+|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~---~~ni~~~~~d~~~l~~~~~-~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG---LDNIEFIQGDIEDLPQELE-EKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT---STTEEEEESBTTCGCGCSS-TTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc---ccccceEEeehhccccccC-CCeeEEE
Confidence 46799999999999999999 45667899999999999999999998877 358999999999977 55 7999999
Q ss_pred ecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
+..+++|+.++..+++++.++||+||.+++.++.
T Consensus 79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999999999999999999999999999999887
No 11
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.79 E-value=1e-18 Score=134.45 Aligned_cols=107 Identities=27% Similarity=0.419 Sum_probs=89.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC-CCCCCCCCccceEEec
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFVDAVHAG 244 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~V~~~ 244 (304)
|+.+|||||||+|.++..+++..+..+++|+|+|+.+++.++++....+ ...++.++++|+ ..... ...||+|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~-~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG--LSDRITFVQGDAEFDPDF-LEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT--TTTTEEEEESCCHGGTTT-SSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEECccccCccc-CCCCCEEEEC
Confidence 4789999999999999999996556799999999999999999996555 568999999999 33333 3569999999
Q ss_pred c-hhccCC---CHHHHHHHHHHhcccCcEEEEEEe
Q 021975 245 A-ALHCWP---SPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 245 ~-vl~h~~---d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
. +++++. +...+++++.+.|+|||++++.++
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 8 555443 457899999999999999999863
No 12
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.78 E-value=8.8e-18 Score=146.00 Aligned_cols=119 Identities=29% Similarity=0.430 Sum_probs=104.3
Q ss_pred HHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (304)
Q Consensus 156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (304)
+.+...+...++.+|||+|||+|.++..+++. ++..+++|+|+++.+++.++++.+..+ ..++.++.+|+..++++
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~ 111 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG---LHNVELVHGNAMELPFD 111 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC---CCceEEEEechhcCCCC
Confidence 34455566667889999999999999999887 456799999999999999999887655 36799999999998888
Q ss_pred CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+++||+|++.++++|++++..+++++.++|||||++++.+...
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 112 DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 8999999999999999999999999999999999999887654
No 13
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.78 E-value=1.5e-18 Score=153.21 Aligned_cols=109 Identities=20% Similarity=0.191 Sum_probs=95.6
Q ss_pred HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCC
Q 021975 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (304)
Q Consensus 157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 236 (304)
.+.+.+...++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|++ .++.++++|+++++ +++
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~----------~~~~~~~~d~~~~~-~~~ 88 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE----------RGVDARTGDVRDWK-PKP 88 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh----------cCCcEEEcChhhCC-CCC
Confidence 3445566567789999999999999999998766799999999999999976 35789999998775 567
Q ss_pred ccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
+||+|++..++||++++..+++++.++|||||++++..+.
T Consensus 89 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 89 DTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 9999999999999999999999999999999999987654
No 14
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.78 E-value=5.3e-18 Score=150.15 Aligned_cols=134 Identities=13% Similarity=0.171 Sum_probs=109.0
Q ss_pred HHHhHHHhhhcCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 021975 135 YERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN 214 (304)
Q Consensus 135 ~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~ 214 (304)
|+..|...+.. ++..+....+...+...++.+|||||||+|..+..+++.. ..+|+|+|+++.+++.++++...
T Consensus 24 ~e~~~g~~~~~---~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-- 97 (263)
T PTZ00098 24 YEFIFGEDYIS---SGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-- 97 (263)
T ss_pred HHHHhCCCCCC---CCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc--
Confidence 44444443333 3333445566666777788899999999999998887753 45999999999999999987643
Q ss_pred ccCCCCeEEEEccCCCCCCCCCccceEEecchhccCC--CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 215 TILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 215 ~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
..++.++.+|+...++++++||+|++..+++|++ ++..+++++.++|||||+|++.++..
T Consensus 98 ---~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 98 ---KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred ---CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 2579999999998889899999999999999987 78899999999999999999998765
No 15
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.78 E-value=3.1e-18 Score=151.13 Aligned_cols=109 Identities=18% Similarity=0.283 Sum_probs=97.6
Q ss_pred cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-CCCCccceEEe
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHA 243 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~ 243 (304)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++.+..+ ...++.++++|+.+++ +.+++||+|++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~g--~~~~v~~~~~d~~~l~~~~~~~fD~V~~ 118 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAKG--VSDNMQFIHCAAQDIAQHLETPVDLILF 118 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CccceEEEEcCHHHHhhhcCCCCCEEEe
Confidence 3467999999999999999999876 99999999999999999988776 3467899999997764 55789999999
Q ss_pred cchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 244 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 244 ~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
..+++|+.+|..+++++.++|||||++++..+..
T Consensus 119 ~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 119 HAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred hhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 9999999999999999999999999999887664
No 16
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.76 E-value=9.2e-18 Score=147.79 Aligned_cols=113 Identities=27% Similarity=0.381 Sum_probs=98.6
Q ss_pred HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (304)
Q Consensus 155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (304)
.+.+.+.+...+..+|||+|||+|.++..+...+. +++|+|+|+.+++.++++. ....++++|++.+|++
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~~D~s~~~l~~a~~~~--------~~~~~~~~d~~~~~~~ 100 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS--QVTALDLSPPMLAQARQKD--------AADHYLAGDIESLPLA 100 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhC--------CCCCEEEcCcccCcCC
Confidence 34555566655677999999999999999988765 9999999999999998853 2356889999999998
Q ss_pred CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+++||+|++..++++.+|+..++.++.++|||||.++++++..
T Consensus 101 ~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 101 TATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 9999999999999999999999999999999999999998765
No 17
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.75 E-value=2.6e-18 Score=146.54 Aligned_cols=105 Identities=31% Similarity=0.456 Sum_probs=91.6
Q ss_pred CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCC----CeEEEEccCCCCCCCCCccceEE
Q 021975 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS----NLALVRADVCRLPFASGFVDAVH 242 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~----~i~~~~~d~~~lp~~~~~fD~V~ 242 (304)
+.+|||+|||+|.++..|++.|. +|+|||+++.+++.|++....... ... ++.+.+.+++.+. +.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h~~~dP~-~~~~~~y~l~~~~~~~E~~~---~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEHKKMDPV-LEGAIAYRLEYEDTDVEGLT---GKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHhhhcCch-hccccceeeehhhcchhhcc---cccceee
Confidence 47799999999999999999997 999999999999999998444331 222 3667777877763 5599999
Q ss_pred ecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
|..|+||+.||..++..+.++|||||.+++++..+
T Consensus 164 csevleHV~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 164 CSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred eHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 99999999999999999999999999999999887
No 18
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.75 E-value=2.2e-17 Score=150.10 Aligned_cols=118 Identities=23% Similarity=0.265 Sum_probs=98.4
Q ss_pred HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (304)
Q Consensus 156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (304)
+.+...+...++.+|||||||+|.++..++..++ ..|+|+|+|+.++..++...+..+ ...++.++.+|++++|+ +
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~--~~~~i~~~~~d~e~lp~-~ 187 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLG--NDQRAHLLPLGIEQLPA-L 187 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcC--CCCCeEEEeCCHHHCCC-c
Confidence 4555566656788999999999999999999875 369999999999876554333222 13579999999999988 7
Q ss_pred CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
++||+|++..+++|+.++..+++++++.|||||.+++.++..
T Consensus 188 ~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i 229 (322)
T PRK15068 188 KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVI 229 (322)
T ss_pred CCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEe
Confidence 899999999999999999999999999999999999987543
No 19
>PRK05785 hypothetical protein; Provisional
Probab=99.74 E-value=1.9e-17 Score=143.30 Aligned_cols=89 Identities=33% Similarity=0.356 Sum_probs=81.1
Q ss_pred CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecch
Q 021975 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 246 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 246 (304)
+.+|||+|||+|.++..+++.+ ..+|+|+|+|++|++.|+++ ..++++|++.+|+++++||+|++.++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~-----------~~~~~~d~~~lp~~d~sfD~v~~~~~ 119 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA-----------DDKVVGSFEALPFRDKSFDVVMSSFA 119 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc-----------cceEEechhhCCCCCCCEEEEEecCh
Confidence 6799999999999999999885 34999999999999999873 23578999999999999999999999
Q ss_pred hccCCCHHHHHHHHHHhcccC
Q 021975 247 LHCWPSPSNAVAEISRILRSG 267 (304)
Q Consensus 247 l~h~~d~~~~l~~~~r~Lkpg 267 (304)
|+|++|+..+++|+.|+|||.
T Consensus 120 l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 120 LHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred hhccCCHHHHHHHHHHHhcCc
Confidence 999999999999999999994
No 20
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.74 E-value=5.5e-17 Score=137.68 Aligned_cols=113 Identities=23% Similarity=0.278 Sum_probs=94.3
Q ss_pred HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCc
Q 021975 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF 237 (304)
Q Consensus 158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~ 237 (304)
+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++.+..+ ..++.+...|+.+.+++ ++
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~~~~~---~~~v~~~~~d~~~~~~~-~~ 95 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIKAAEN---LDNLHTAVVDLNNLTFD-GE 95 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcC---CCcceEEecChhhCCcC-CC
Confidence 33444445678999999999999999999876 99999999999999999888765 24688999999887764 57
Q ss_pred cceEEecchhccCC--CHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 238 VDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 238 fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
||+|++..+++|++ +...+++++.++|||||++++.+..
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~ 136 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM 136 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 99999999999886 4568999999999999997665443
No 21
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.74 E-value=1.2e-16 Score=140.27 Aligned_cols=126 Identities=17% Similarity=0.272 Sum_probs=101.6
Q ss_pred CCCcHHHHHHHHHhhc--ccCCCeEEEEcCCccHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEE
Q 021975 148 FPGPDEEFKMAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL 223 (304)
Q Consensus 148 ~~~~~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~ 223 (304)
.|.++.....+...+. ..++.+|||+|||+|..+..+++. .++.+++|+|+|+.|++.|+++++..+ ...++.+
T Consensus 36 ~p~y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~--~~~~v~~ 113 (247)
T PRK15451 36 VPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDV 113 (247)
T ss_pred CCChHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEE
Confidence 3555555444443322 235779999999999999888873 456799999999999999999998765 3457999
Q ss_pred EEccCCCCCCCCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCC
Q 021975 224 VRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 224 ~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+++|+..++++ .+|+|++..++||+++. ..+++++.++|||||.|++.+...
T Consensus 114 ~~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 114 IEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred EeCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 99999988764 49999999999999743 579999999999999999998654
No 22
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=1e-16 Score=140.44 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=106.9
Q ss_pred HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (304)
Q Consensus 155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (304)
.+.+.+.+...+|.+|||||||.|.++..+++.. +.+|+|+++|+++.+.++++++..+ ...++++...|..++.
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~g--l~~~v~v~l~d~rd~~-- 135 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARG--LEDNVEVRLQDYRDFE-- 135 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcC--CCcccEEEeccccccc--
Confidence 4567778888899999999999999999999996 5699999999999999999999999 4578999999988864
Q ss_pred CCccceEEecchhccCCC--HHHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975 235 SGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYT 279 (304)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~lvi~~~~~~~ 279 (304)
+.||-|++..++||+.. ...+++.+.++|+|||++++-+...+.
T Consensus 136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 45999999999999975 789999999999999999999888765
No 23
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.73 E-value=5.4e-17 Score=146.21 Aligned_cols=116 Identities=21% Similarity=0.205 Sum_probs=94.6
Q ss_pred HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCC
Q 021975 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (304)
Q Consensus 157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 236 (304)
.+...+...++.+|||||||+|.++..++..++ ..|+|+|+|+.++..++..-+..+ ...++.+...++++++.. .
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~--~~~~v~~~~~~ie~lp~~-~ 187 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLD--NDKRAILEPLGIEQLHEL-Y 187 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhc--cCCCeEEEECCHHHCCCC-C
Confidence 445555566788999999999999999988875 379999999999876543222211 135788889999888754 4
Q ss_pred ccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
+||+|++.++|+|+++|..+|++++++|||||.|++.+..
T Consensus 188 ~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 188 AFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred CcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEE
Confidence 8999999999999999999999999999999999998764
No 24
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.73 E-value=8.1e-17 Score=154.40 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=102.7
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (304)
Q Consensus 154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (304)
..+.+.+.+...++.+|||||||+|..+..+++.. +.+++|+|+|+.+++.|+++.... ..++.+..+|+...++
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~----~~~v~~~~~d~~~~~~ 328 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR----KCSVEFEVADCTKKTY 328 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC----CCceEEEEcCcccCCC
Confidence 34455555555567899999999999998888764 459999999999999998876532 3579999999998888
Q ss_pred CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
++++||+|++..+++|++++..+++++.++|||||.+++.++..
T Consensus 329 ~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 329 PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 88899999999999999999999999999999999999998765
No 25
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.73 E-value=5.8e-17 Score=137.31 Aligned_cols=114 Identities=18% Similarity=0.198 Sum_probs=93.3
Q ss_pred HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCC
Q 021975 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (304)
Q Consensus 157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 236 (304)
.+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++.+..+ ..+.+...|+...+++ +
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~-~ 93 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDMKAREN----LPLRTDAYDINAAALN-E 93 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHhC----CCceeEeccchhcccc-C
Confidence 344455555567999999999999999999875 99999999999999999887665 2477888888766654 5
Q ss_pred ccceEEecchhccCC--CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 237 FVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 237 ~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+||+|++..+++|++ +...+++++.++|||||++++.++..
T Consensus 94 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~ 136 (195)
T TIGR00477 94 DYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMD 136 (195)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecc
Confidence 799999999999985 44689999999999999977765543
No 26
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.73 E-value=3.8e-17 Score=144.45 Aligned_cols=112 Identities=19% Similarity=0.267 Sum_probs=96.2
Q ss_pred HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (304)
Q Consensus 156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (304)
+.+...+...++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.++++. .++.++.+|+..+. ++
T Consensus 21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~--------~~~~~~~~d~~~~~-~~ 91 (258)
T PRK01683 21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL--------PDCQFVEADIASWQ-PP 91 (258)
T ss_pred HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC--------CCCeEEECchhccC-CC
Confidence 3444555556678999999999999999998876779999999999999998853 56889999998764 45
Q ss_pred CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
.+||+|++..+++|++|+..+++++.++|||||.+++..+.
T Consensus 92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 68999999999999999999999999999999999987543
No 27
>PRK08317 hypothetical protein; Provisional
Probab=99.72 E-value=1.6e-16 Score=138.18 Aligned_cols=117 Identities=34% Similarity=0.467 Sum_probs=101.9
Q ss_pred HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (304)
Q Consensus 156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (304)
+.+...+...++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.++++... ...++.+..+|+...+++
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~----~~~~~~~~~~d~~~~~~~ 84 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG----LGPNVEFVRGDADGLPFP 84 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC----CCCceEEEecccccCCCC
Confidence 445556666678899999999999999999875 567999999999999999987332 236799999999988888
Q ss_pred CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
+++||+|++..+++|+.++..+++++.++|||||.+++.++.
T Consensus 85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 899999999999999999999999999999999999998753
No 28
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.72 E-value=2.9e-17 Score=134.20 Aligned_cols=107 Identities=29% Similarity=0.507 Sum_probs=87.8
Q ss_pred HHHHhhc-ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975 157 MAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (304)
Q Consensus 157 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (304)
.+..... ..++.+|||||||+|.++..+++.+. +++|+|+++.+++. . .+.....+....+.++
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~--~-----------~~~~~~~~~~~~~~~~ 76 (161)
T PF13489_consen 12 LLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK--R-----------NVVFDNFDAQDPPFPD 76 (161)
T ss_dssp HHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH--T-----------TSEEEEEECHTHHCHS
T ss_pred HHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh--h-----------hhhhhhhhhhhhhccc
Confidence 3444443 45678999999999999999988887 99999999999887 1 1233333333445568
Q ss_pred CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
++||+|+++.+|+|++|+..+|+++.++|||||++++.++...
T Consensus 77 ~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 77 GSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp SSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred cchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 8999999999999999999999999999999999999999863
No 29
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.72 E-value=4.9e-17 Score=133.78 Aligned_cols=118 Identities=23% Similarity=0.322 Sum_probs=102.1
Q ss_pred HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeE-EEEccCCCCC-C
Q 021975 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA-LVRADVCRLP-F 233 (304)
Q Consensus 156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~-~~~~d~~~lp-~ 233 (304)
.-+..++.......|||+|||+|.....+... +..+|+++|+++.|.+++.+.++++. +.++. |+.++.+++| +
T Consensus 66 s~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k---~~~~~~fvva~ge~l~~l 141 (252)
T KOG4300|consen 66 SGIYYFLGKSGKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKK---PLQVERFVVADGENLPQL 141 (252)
T ss_pred hhhHHHhcccCccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhcc---CcceEEEEeechhcCccc
Confidence 34444555555567899999999988766543 35699999999999999999998875 56676 9999999998 8
Q ss_pred CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+++++|+|++..+|..+.||.+.|.++.|+|||||++++.++..
T Consensus 142 ~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 142 ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 89999999999999999999999999999999999999999887
No 30
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.71 E-value=1.5e-16 Score=141.70 Aligned_cols=111 Identities=21% Similarity=0.350 Sum_probs=98.6
Q ss_pred ccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEE
Q 021975 164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (304)
Q Consensus 164 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~ 242 (304)
..++.+|||+|||+|..+..+++. ++..+|+|+|+++.+++.|+++....+ ..++.++.+|++.+++++++||+|+
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g---~~~v~~~~~d~~~l~~~~~~fD~Vi 151 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG---YTNVEFRLGEIEALPVADNSVDVII 151 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC---CCCEEEEEcchhhCCCCCCceeEEE
Confidence 456889999999999988776665 555689999999999999999887765 3588999999999998888999999
Q ss_pred ecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+..+++|+++...+++++.++|||||+|++.++..
T Consensus 152 ~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 152 SNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred EcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 99999999999999999999999999999987654
No 31
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.71 E-value=1.3e-16 Score=138.09 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=96.0
Q ss_pred CeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchh
Q 021975 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 247 (304)
Q Consensus 168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl 247 (304)
.+|||||||+|.++..+++.++..+++|+|+|+.+++.++++++..+ ...++.++..|+...+++ ++||+|++..++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g--l~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG--LQGRIRIFYRDSAKDPFP-DTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CCcceEEEecccccCCCC-CCCCEeehHHHH
Confidence 37999999999999999988766799999999999999999998776 457899999999776664 589999999999
Q ss_pred ccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 248 HCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 248 ~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+|+.++..+++++.++|||||++++.++..
T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 107 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDGGHLVLADFIA 107 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCCCEEEEEEccc
Confidence 999999999999999999999999988643
No 32
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.71 E-value=2.5e-16 Score=137.66 Aligned_cols=108 Identities=17% Similarity=0.245 Sum_probs=94.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEe
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (304)
++.+|||+|||+|.++..+++.. ++.+++|+|+|+.|++.|+++++..+ ...++.++++|+..++++ .+|+|++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~--~~d~v~~ 128 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH--SEIPVEILCNDIRHVEIK--NASMVIL 128 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEECChhhCCCC--CCCEEee
Confidence 56799999999999999998863 56799999999999999999987654 345789999999988865 4899999
Q ss_pred cchhccCCC--HHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 244 GAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 244 ~~vl~h~~d--~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
.++++|+++ +..+++++.++|||||.+++.++..
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 999999974 4689999999999999999998765
No 33
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.71 E-value=2e-16 Score=137.66 Aligned_cols=105 Identities=28% Similarity=0.464 Sum_probs=95.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (304)
.+.+|||+|||+|.++..+++.++..+++|+|+++.+++.++++.. .++.++.+|+...++++++||+|++.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~fD~vi~~~ 106 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAEKLPLEDSSFDLIVSNL 106 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchhhCCCCCCceeEEEEhh
Confidence 3568999999999999999999887789999999999999988642 468899999999988889999999999
Q ss_pred hhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 246 vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+++|+.++..+++++.++|||||.+++.++..
T Consensus 107 ~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 107 ALQWCDDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred hhhhccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 99999999999999999999999999988654
No 34
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.71 E-value=1.4e-16 Score=141.13 Aligned_cols=117 Identities=21% Similarity=0.269 Sum_probs=94.5
Q ss_pred HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (304)
Q Consensus 155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (304)
.+.+.+.+...++.+|||||||.|.++..++++. +++|+|+++|++..+.++++++..+ ...++.+...|..+++
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~g--l~~~v~v~~~D~~~~~-- 125 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAG--LEDRVEVRLQDYRDLP-- 125 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST--SSSTEEEEES-GGG----
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEeeccccC--
Confidence 4566677777889999999999999999999994 4599999999999999999999988 5678999999988765
Q ss_pred CCccceEEecchhccCC--CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 235 SGFVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 235 ~~~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
.+||.|++..++||+. +...+++++.++|||||++++.+...
T Consensus 126 -~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 126 -GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred -CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 3899999999999995 56899999999999999999877665
No 35
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.69 E-value=6.5e-17 Score=122.33 Aligned_cols=95 Identities=32% Similarity=0.552 Sum_probs=80.3
Q ss_pred EEEEcCCccHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec-c
Q 021975 170 LVDVSCGSGLFSRKFAKSG---TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG-A 245 (304)
Q Consensus 170 vLDiGcG~G~~~~~l~~~~---~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~-~ 245 (304)
|||+|||+|..+..+.+.. +..+++|+|+|+.+++.++++....+ .+++++++|+.++++.+++||+|++. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~----~~~~~~~~D~~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG----PKVRFVQADARDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT----TTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC----CceEEEECCHhHCcccCCCeeEEEEcCC
Confidence 7999999999999999875 34699999999999999999987755 48999999999999888999999995 5
Q ss_pred hhccCCCH--HHHHHHHHHhcccCc
Q 021975 246 ALHCWPSP--SNAVAEISRILRSGG 268 (304)
Q Consensus 246 vl~h~~d~--~~~l~~~~r~LkpgG 268 (304)
+++|+.+. ..+++++.++|||||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 59998744 579999999999998
No 36
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.69 E-value=4.5e-16 Score=141.33 Aligned_cols=106 Identities=23% Similarity=0.358 Sum_probs=94.1
Q ss_pred cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (304)
.++.+|||||||+|.++..+++..+..+++++|+++.+++.|+++... .++.++.+|++++++++++||+|++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~------~~i~~i~gD~e~lp~~~~sFDvVIs~ 185 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECKIIEGDAEDLPFPTDYADRYVSA 185 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc------cCCeEEeccHHhCCCCCCceeEEEEc
Confidence 356799999999999998888775556999999999999999986532 46789999999999988999999999
Q ss_pred chhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
.+++|++++..+++++.++|||||++++....
T Consensus 186 ~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 186 GSIEYWPDPQRGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred ChhhhCCCHHHHHHHHHHhcCCCcEEEEEEec
Confidence 99999999999999999999999999887654
No 37
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.69 E-value=7.1e-18 Score=127.07 Aligned_cols=97 Identities=25% Similarity=0.379 Sum_probs=66.6
Q ss_pred EEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--CCCCccceEEecchhc
Q 021975 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAGAALH 248 (304)
Q Consensus 171 LDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~~vl~ 248 (304)
||||||+|.++..+.+..+..+++|+|+|+.+++.+++++.... ..+...+..+..+.. ...++||+|++..++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---NDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 79999999999999999777899999999999998888887764 233444444433322 1125999999999999
Q ss_pred cCCCHHHHHHHHHHhcccCcEE
Q 021975 249 CWPSPSNAVAEISRILRSGGVF 270 (304)
Q Consensus 249 h~~d~~~~l~~~~r~LkpgG~l 270 (304)
|++++..+++++.++|||||+|
T Consensus 78 ~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999986
No 38
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.68 E-value=1.6e-15 Score=127.23 Aligned_cols=103 Identities=19% Similarity=0.172 Sum_probs=91.0
Q ss_pred CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecch
Q 021975 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 246 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 246 (304)
+.+|||+|||+|..+..+++..+..+|+|+|+++.+++.|+++.+..+. .++.++.+|+.+++. .++||+|++..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l---~~i~~~~~d~~~~~~-~~~fDlV~~~~- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL---KNVTVVHGRAEEFGQ-EEKFDVVTSRA- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC---CCEEEEeccHhhCCC-CCCccEEEEcc-
Confidence 7899999999999999998876677999999999999999999998873 459999999988876 77999999975
Q ss_pred hccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 247 LHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 247 l~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+.++..+++++.++|||||++++.....
T Consensus 121 ---~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 121 ---VASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred ---ccCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 4577889999999999999999887543
No 39
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.67 E-value=2.9e-15 Score=130.37 Aligned_cols=119 Identities=30% Similarity=0.475 Sum_probs=102.5
Q ss_pred HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (304)
Q Consensus 157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (304)
.+...+...++.+|||+|||+|.++..++..++ ..+++|+|+++.+++.+++++...+ ...++.++.+|+...++..
T Consensus 42 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~ 119 (239)
T PRK00216 42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG--LSGNVEFVQGDAEALPFPD 119 (239)
T ss_pred HHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc--cccCeEEEecccccCCCCC
Confidence 334444444678999999999999999998875 5799999999999999999886644 2467899999999888777
Q ss_pred CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
++||+|++.++++|+.++..+++++.++|+|||++++.+...
T Consensus 120 ~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 120 NSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred CCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 899999999999999999999999999999999999987755
No 40
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.66 E-value=9.5e-16 Score=134.55 Aligned_cols=118 Identities=21% Similarity=0.264 Sum_probs=95.5
Q ss_pred HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (304)
Q Consensus 156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (304)
+.+...+..-.+++|||||||+|+++..+...|+ ..|+|+|++.....+.+-.-+-.+ ....+..+...++++|. .
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg--~~~~~~~lplgvE~Lp~-~ 180 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLG--QDPPVFELPLGVEDLPN-L 180 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhC--CCccEEEcCcchhhccc-c
Confidence 5566677667899999999999999999999985 579999999977665443322222 12334555467788887 7
Q ss_pred CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+.||+|++.+||.|..+|...|.+++..|++||.+++-|..-
T Consensus 181 ~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi 222 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVI 222 (315)
T ss_pred CCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeee
Confidence 899999999999999999999999999999999999988764
No 41
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.66 E-value=1.7e-15 Score=136.01 Aligned_cols=104 Identities=18% Similarity=0.224 Sum_probs=89.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (304)
++++|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++.+..+ .++.+...|+...++ +++||+|++..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~~~~~~----l~v~~~~~D~~~~~~-~~~fD~I~~~~ 192 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEIAEKEN----LNIRTGLYDINSASI-QEEYDFILSTV 192 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC----CceEEEEechhcccc-cCCccEEEEcc
Confidence 456999999999999999999875 99999999999999999888766 378888889877655 67899999999
Q ss_pred hhccCC--CHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 246 ALHCWP--SPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 246 vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
+++|++ +...+++++.++|||||++++....
T Consensus 193 vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~ 225 (287)
T PRK12335 193 VLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAM 225 (287)
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 999986 4568999999999999997775543
No 42
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.66 E-value=3.9e-15 Score=116.23 Aligned_cols=114 Identities=23% Similarity=0.231 Sum_probs=92.4
Q ss_pred HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-CCCC
Q 021975 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFA 234 (304)
Q Consensus 156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~ 234 (304)
..+.+.+...++.+|||+|||+|.++..+++..+..+++|+|+++.+++.++++.+..+ ..++.++.+|+.. ++..
T Consensus 9 ~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~ 85 (124)
T TIGR02469 9 ALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG---VSNIVIVEGDAPEALEDS 85 (124)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC---CCceEEEeccccccChhh
Confidence 44555555556779999999999999999998766799999999999999999888765 2578999888764 3333
Q ss_pred CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
..+||+|++....++ ...+++++.+.|||||+|++...
T Consensus 86 ~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 86 LPEPDRVFIGGSGGL---LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred cCCCCEEEECCcchh---HHHHHHHHHHHcCCCCEEEEEec
Confidence 468999999776543 35889999999999999998764
No 43
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.65 E-value=2.5e-15 Score=128.04 Aligned_cols=101 Identities=12% Similarity=0.261 Sum_probs=86.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (304)
++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|+++. .++.+.++|+.. |+++++||+|++.+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~--------~~~~~~~~d~~~-~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL--------PNINIIQGSLFD-PFKDNFFDLVLTKG 113 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC--------CCCcEEEeeccC-CCCCCCEEEEEECC
Confidence 467899999999999999998755669999999999999998853 457788999888 88899999999999
Q ss_pred hhccCC--CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 246 ALHCWP--SPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 246 vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+|+|++ +...+++++.+++ ++.+++.++..
T Consensus 114 vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 114 VLIHINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred hhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 999995 2357889999987 56888888755
No 44
>PRK06922 hypothetical protein; Provisional
Probab=99.64 E-value=2.1e-15 Score=145.13 Aligned_cols=108 Identities=19% Similarity=0.309 Sum_probs=94.0
Q ss_pred cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--CCCCccceEE
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVH 242 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~ 242 (304)
.++.+|||+|||+|.++..+++..++.+++|+|+|+.|++.|+++....+ .++.++++|+.+++ +++++||+|+
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g----~~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG----RSWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC----CCeEEEEcchHhCccccCCCCEEEEE
Confidence 35789999999999999999988788899999999999999998765543 56888999998887 7889999999
Q ss_pred ecchhccCC-------------CHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 243 AGAALHCWP-------------SPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 243 ~~~vl~h~~-------------d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
++.++||+. ++..+++++.++|||||.+++.+..
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 999998762 4578999999999999999998753
No 45
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.64 E-value=8.1e-15 Score=125.54 Aligned_cols=111 Identities=24% Similarity=0.242 Sum_probs=88.1
Q ss_pred cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC---------ccCCCCeEEEEccCCCCCCC-
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN---------TILTSNLALVRADVCRLPFA- 234 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~~~~~i~~~~~d~~~lp~~- 234 (304)
.++.+|||+|||.|..+..|+++|. +|+|+|+|+.+++.+.+...... .....+++++++|+.+++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 3567999999999999999999988 99999999999998644221100 00135789999999887642
Q ss_pred CCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCC
Q 021975 235 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
.+.||.|+...+++|++.. ..+++.+.++|||||++++.++..
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 4579999999999999644 358999999999999988877654
No 46
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.63 E-value=7.9e-15 Score=126.31 Aligned_cols=115 Identities=30% Similarity=0.425 Sum_probs=99.6
Q ss_pred HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCC
Q 021975 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (304)
Q Consensus 158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 236 (304)
+...+...++.+|||+|||+|.++..+++.++. .+++|+|+++.+++.++++.. . ..++.++.+|+.+.+++++
T Consensus 31 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~----~~~i~~~~~d~~~~~~~~~ 105 (223)
T TIGR01934 31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L----PLNIEFIQADAEALPFEDN 105 (223)
T ss_pred HHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c----CCCceEEecchhcCCCCCC
Confidence 333444446789999999999999999988764 689999999999999998765 1 2578999999998888778
Q ss_pred ccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+||+|++.++++|..++..+++++.++|+|||++++.++..
T Consensus 106 ~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 106 SFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred cEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 99999999999999999999999999999999999988754
No 47
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.63 E-value=7.2e-15 Score=122.70 Aligned_cols=112 Identities=19% Similarity=0.270 Sum_probs=90.4
Q ss_pred HHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCcc
Q 021975 159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV 238 (304)
Q Consensus 159 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f 238 (304)
.+.+...+++++||+|||.|+.+..|++.|. .|+++|.|+.+++.+++..+..+ ..+...+.|+....++ +.|
T Consensus 23 ~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~~~----l~i~~~~~Dl~~~~~~-~~y 95 (192)
T PF03848_consen 23 LEAVPLLKPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEEEG----LDIRTRVADLNDFDFP-EEY 95 (192)
T ss_dssp HHHCTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHTT-----TEEEEE-BGCCBS-T-TTE
T ss_pred HHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhhcC----ceeEEEEecchhcccc-CCc
Confidence 3334445678999999999999999999998 99999999999999988887766 4599999999887775 689
Q ss_pred ceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCC
Q 021975 239 DAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 239 D~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
|+|++..|++|++.+ ..+++.+...++|||++++.++..
T Consensus 96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~ 136 (192)
T PF03848_consen 96 DFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFME 136 (192)
T ss_dssp EEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB-
T ss_pred CEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecc
Confidence 999999999998744 468999999999999999877755
No 48
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.63 E-value=6.8e-15 Score=123.01 Aligned_cols=101 Identities=16% Similarity=0.220 Sum_probs=86.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (304)
++.+|||+|||+|.++..++..++..+|+|+|+++.+++.++++.+..+ ..++.++++|+.+++ ..++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~---~~~i~~i~~d~~~~~-~~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG---LNNVEIVNGRAEDFQ-HEEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC---CCCeEEEecchhhcc-ccCCccEEEehh
Confidence 4789999999999999998887777799999999999999999888776 246999999998874 357899999976
Q ss_pred hhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 246 ALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 246 vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
+ .+...+++.+.++|||||++++..
T Consensus 118 -~---~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 118 -L---ASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred -h---hCHHHHHHHHHHhcCCCCEEEEEc
Confidence 3 456678899999999999999874
No 49
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.63 E-value=9e-15 Score=124.87 Aligned_cols=114 Identities=20% Similarity=0.177 Sum_probs=93.0
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (304)
Q Consensus 154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (304)
....+.+.+...++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|+++++..+ ...++.++.+|+.+..
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~--~~~~v~~~~~d~~~~~ 137 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG--YWGVVEVYHGDGKRGL 137 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEECCcccCC
Confidence 34556666766678899999999999998888763 34599999999999999999998776 3346899999997754
Q ss_pred CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
...++||+|++..+++|++ +++.+.|||||+|++...
T Consensus 138 ~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 138 EKHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred ccCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEEc
Confidence 4567999999999988765 468899999999988653
No 50
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.62 E-value=3.5e-15 Score=127.07 Aligned_cols=109 Identities=19% Similarity=0.231 Sum_probs=91.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC-CCCC--CCCCccceEE
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLP--FASGFVDAVH 242 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp--~~~~~fD~V~ 242 (304)
++.+|||+|||+|.++..+++..+..+++|+|+++.+++.++++++..+ ..++.++++|+ ..++ +++++||+|+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~---~~~v~~~~~d~~~~l~~~~~~~~~D~V~ 116 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG---LTNLRLLCGDAVEVLLDMFPDGSLDRIY 116 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC---CCCEEEEecCHHHHHHHHcCccccceEE
Confidence 5679999999999999999988777799999999999999999988765 26799999999 6665 6678999999
Q ss_pred ecchhccCC--------CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 243 AGAALHCWP--------SPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 243 ~~~vl~h~~--------d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+.+...... ....+++++.++|||||+|++.+...
T Consensus 117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 876532211 13678999999999999999987543
No 51
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.61 E-value=1.7e-14 Score=130.69 Aligned_cols=118 Identities=15% Similarity=0.125 Sum_probs=100.1
Q ss_pred HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (304)
Q Consensus 156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (304)
+.+.+.+...+..+|||||||+|.++..+++++|..+++++|. +.+++.++++++..+ ...+++++.+|+.+.+++.
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g--l~~rv~~~~~d~~~~~~~~ 215 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG--VADRMRGIAVDIYKESYPE 215 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC--ccceEEEEecCccCCCCCC
Confidence 4445555555678999999999999999999998889999997 789999999998877 4578999999998766543
Q ss_pred CccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCCC
Q 021975 236 GFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
+|+|++.+++|++.+. ..+++++.+.|||||++++.++...
T Consensus 216 --~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 216 --ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred --CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 6999999999998765 4789999999999999999987553
No 52
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.61 E-value=7.3e-15 Score=121.48 Aligned_cols=110 Identities=17% Similarity=0.250 Sum_probs=87.7
Q ss_pred HHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCcc
Q 021975 159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV 238 (304)
Q Consensus 159 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f 238 (304)
...++...-.++||+|||.|.++..|+.... +++++|+++.+++.|+++++.. +++.|.++|+... .+.++|
T Consensus 36 ~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~-----~~V~~~~~dvp~~-~P~~~F 107 (201)
T PF05401_consen 36 LAALPRRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGL-----PHVEWIQADVPEF-WPEGRF 107 (201)
T ss_dssp HHHHTTSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT----SS-E
T ss_pred HHhcCccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCC-----CCeEEEECcCCCC-CCCCCe
Confidence 3345665667899999999999999999976 9999999999999999998753 6899999999774 468899
Q ss_pred ceEEecchhccCCCH---HHHHHHHHHhcccCcEEEEEEeC
Q 021975 239 DAVHAGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 239 D~V~~~~vl~h~~d~---~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
|+|+++.+++++.+. ..+++.+...|+|||.|++.++.
T Consensus 108 DLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 108 DLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp EEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred eEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 999999999999764 46899999999999999999874
No 53
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.60 E-value=4e-15 Score=123.49 Aligned_cols=111 Identities=19% Similarity=0.212 Sum_probs=100.3
Q ss_pred HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCc
Q 021975 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF 237 (304)
Q Consensus 158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~ 237 (304)
+...+...+..+|.|+|||+|..+..|+++.|.+.++|+|-|++|++.|+++ .+++.|..+|+.... ++..
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r--------lp~~~f~~aDl~~w~-p~~~ 92 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR--------LPDATFEEADLRTWK-PEQP 92 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh--------CCCCceecccHhhcC-CCCc
Confidence 4455666677899999999999999999999999999999999999999884 588999999998875 4678
Q ss_pred cceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 238 fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+|+++++.+|+.++|-..+|..+...|.|||+|.+..+..
T Consensus 93 ~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 93 TDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred cchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 9999999999999999999999999999999999987765
No 54
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.60 E-value=2.5e-14 Score=119.51 Aligned_cols=113 Identities=15% Similarity=0.232 Sum_probs=93.6
Q ss_pred HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCC
Q 021975 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (304)
Q Consensus 157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 236 (304)
++...+...++.+|||+|||+|.++..+++.++ +++|+|+++.+++.++++++..+ .++.++.+|+...+ .+
T Consensus 10 ~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~--~~ 81 (179)
T TIGR00537 10 LLEANLRELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNN----VGLDVVMTDLFKGV--RG 81 (179)
T ss_pred HHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC----CceEEEEccccccc--CC
Confidence 444555555677999999999999999999886 99999999999999999988765 46889999987654 45
Q ss_pred ccceEEecchhccCCC---------------------HHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 237 FVDAVHAGAALHCWPS---------------------PSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 237 ~fD~V~~~~vl~h~~d---------------------~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+||+|+++..+++.++ ...+++++.++|||||.+++.+...
T Consensus 82 ~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 82 KFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred cccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 8999999988776653 2457999999999999999988654
No 55
>PLN03075 nicotianamine synthase; Provisional
Probab=99.60 E-value=2.7e-14 Score=126.61 Aligned_cols=107 Identities=11% Similarity=0.087 Sum_probs=90.2
Q ss_pred CCCeEEEEcCCccHHHHH--HHHhCCCCeEEEEeCCHHHHHHHHHHHHh-cCccCCCCeEEEEccCCCCCCCCCccceEE
Q 021975 166 QGGLLVDVSCGSGLFSRK--FAKSGTYSGVVALDFSENMLRQCYDFIKQ-DNTILTSNLALVRADVCRLPFASGFVDAVH 242 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~--l~~~~~~~~v~giD~s~~~~~~a~~~~~~-~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~ 242 (304)
++.+|+|||||.|.++.. ++..+++++++|+|+++++++.|++.++. .+ ...++.|..+|+.+.+-..+.||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g--L~~rV~F~~~Da~~~~~~l~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD--LSKRMFFHTADVMDVTESLKEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC--ccCCcEEEECchhhcccccCCcCEEE
Confidence 678999999998855443 33457788999999999999999999854 44 45789999999987643357899999
Q ss_pred ecchhccC--CCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 243 AGAALHCW--PSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 243 ~~~vl~h~--~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
+. +++++ .++.++++++.+.|+|||++++...
T Consensus 201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred Ee-cccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 99 99998 6899999999999999999999874
No 56
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.59 E-value=3.8e-14 Score=117.48 Aligned_cols=119 Identities=21% Similarity=0.370 Sum_probs=96.0
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (304)
Q Consensus 154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (304)
-.+++.+.+...+..+|||+|||+|..+..+++.++..+|+++|+++.+++.++++++.++. .++.++..|..+. .
T Consensus 19 ~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~---~~v~~~~~d~~~~-~ 94 (170)
T PF05175_consen 19 GTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL---ENVEVVQSDLFEA-L 94 (170)
T ss_dssp HHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC---TTEEEEESSTTTT-C
T ss_pred HHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc---ccccccccccccc-c
Confidence 34566666666678899999999999999999999877799999999999999999999873 2399999998663 3
Q ss_pred CCCccceEEecchhccCCC-----HHHHHHHHHHhcccCcEEEEEEeC
Q 021975 234 ASGFVDAVHAGAALHCWPS-----PSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d-----~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
++++||+|+++--++.-.+ ...++++..+.|||||.+++....
T Consensus 95 ~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 95 PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 4789999999876554443 357899999999999999876653
No 57
>PRK06202 hypothetical protein; Provisional
Probab=99.59 E-value=1.7e-14 Score=125.52 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=86.4
Q ss_pred cccCCCeEEEEcCCccHHHHHHHH----hCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCcc
Q 021975 163 KSAQGGLLVDVSCGSGLFSRKFAK----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV 238 (304)
Q Consensus 163 ~~~~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f 238 (304)
...++.+|||+|||+|.++..+++ .+++.+++|+|+++.+++.|+++... .++.+...+...++..+++|
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~------~~~~~~~~~~~~l~~~~~~f 130 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR------PGVTFRQAVSDELVAEGERF 130 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc------CCCeEEEEecccccccCCCc
Confidence 334567999999999999888775 35556999999999999999886532 34667777777777677899
Q ss_pred ceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCC
Q 021975 239 DAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 239 D~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
|+|++++++||++++ ..+++++.++++ |.+++.+..+
T Consensus 131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~ 169 (232)
T PRK06202 131 DVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR 169 (232)
T ss_pred cEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence 999999999999986 479999999998 5667767665
No 58
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.59 E-value=1.4e-14 Score=128.19 Aligned_cols=110 Identities=14% Similarity=0.175 Sum_probs=85.6
Q ss_pred CCCeEEEEcCCccHH----HHHHHHhCC-----CCeEEEEeCCHHHHHHHHHHHHh----cCc-----------------
Q 021975 166 QGGLLVDVSCGSGLF----SRKFAKSGT-----YSGVVALDFSENMLRQCYDFIKQ----DNT----------------- 215 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~----~~~l~~~~~-----~~~v~giD~s~~~~~~a~~~~~~----~~~----------------- 215 (304)
++.+|||+|||+|.- +..+++.++ +.+++|+|+|+.+++.|++..-. .+.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 456899999999973 334444432 46899999999999999985310 000
Q ss_pred ---cCCCCeEEEEccCCCCCCCCCccceEEecchhccCCCHH--HHHHHHHHhcccCcEEEEEEe
Q 021975 216 ---ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 216 ---~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~ 275 (304)
....++.|.++|+.+.+++.++||+|+|.++++|++++. .++++++++|||||+|++..-
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 001368999999999877788999999999999997554 799999999999999998653
No 59
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.59 E-value=2e-14 Score=133.62 Aligned_cols=112 Identities=17% Similarity=0.181 Sum_probs=93.5
Q ss_pred HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (304)
Q Consensus 156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (304)
+.+.+.+...++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|+++.+. ..+.+...|...+ +
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~------l~v~~~~~D~~~l---~ 226 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAG------LPVEIRLQDYRDL---N 226 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcc------CeEEEEECchhhc---C
Confidence 344455666678899999999999999998874 35999999999999999997742 3478888888765 4
Q ss_pred CccceEEecchhccCCC--HHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 236 GFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 236 ~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
++||.|++..+++|+.+ +..+++++.++|||||++++.++..
T Consensus 227 ~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 227 GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 68999999999999964 4689999999999999999988754
No 60
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.58 E-value=4.2e-14 Score=121.30 Aligned_cols=113 Identities=18% Similarity=0.195 Sum_probs=92.9
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (304)
Q Consensus 153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (304)
.....+.+.+...++.+|||||||+|+++..+++. +...+|+++|+++.+++.++++++..+ ..++.++.+|....
T Consensus 63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g---~~~v~~~~gd~~~~ 139 (212)
T PRK13942 63 HMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG---YDNVEVIVGDGTLG 139 (212)
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEECCcccC
Confidence 44556666777778899999999999999888877 445699999999999999999998876 35799999998776
Q ss_pred CCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
....+.||+|++....++++ ..+.+.|||||++++..
T Consensus 140 ~~~~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 140 YEENAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcCCCcCEEEECCCcccch------HHHHHhhCCCcEEEEEE
Confidence 55678999999988776553 45777899999988854
No 61
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.58 E-value=3.5e-14 Score=123.60 Aligned_cols=117 Identities=22% Similarity=0.347 Sum_probs=98.6
Q ss_pred HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-C
Q 021975 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F 233 (304)
Q Consensus 155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~ 233 (304)
++.+...+...++.+|||||||+|.++..+.+.+. +++++|+++.+++.+++++...+ ..+.++..++.+.+ .
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~ 110 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHALESG----LKIDYRQTTAEELAAE 110 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHHHHcC----CceEEEecCHHHhhhh
Confidence 34555555555688999999999999999988765 89999999999999999877654 36788888887654 3
Q ss_pred CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
.++.||+|++.++++|++++..+++.+.++|+|||.+++..+..
T Consensus 111 ~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred cCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 45789999999999999999999999999999999999887653
No 62
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.58 E-value=2e-14 Score=137.84 Aligned_cols=114 Identities=22% Similarity=0.315 Sum_probs=95.1
Q ss_pred HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC--CCCC
Q 021975 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC--RLPF 233 (304)
Q Consensus 156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~--~lp~ 233 (304)
..+.+.+...++.+|||||||+|.++..+++.+. +++|+|+++.+++.+++... ...++.++++|+. .+++
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~-----~~~~i~~~~~d~~~~~~~~ 99 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESING-----HYKNVKFMCADVTSPDLNI 99 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhc-----cCCceEEEEecccccccCC
Confidence 3455555555677999999999999999999865 99999999999988765322 2357899999986 4677
Q ss_pred CCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeC
Q 021975 234 ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
++++||+|++..+++|+++. ..+++++.++|||||++++.+..
T Consensus 100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 78899999999999999874 68999999999999999998754
No 63
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.58 E-value=6.9e-14 Score=117.69 Aligned_cols=114 Identities=19% Similarity=0.166 Sum_probs=92.8
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (304)
Q Consensus 154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (304)
....+...+...++.+|||+|||+|.++..+++.++..+++++|+++.+++.++++.+..+. .++.++.+|+.. ++
T Consensus 19 ~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~---~~i~~~~~d~~~-~~ 94 (187)
T PRK08287 19 VRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC---GNIDIIPGEAPI-EL 94 (187)
T ss_pred HHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC---CCeEEEecCchh-hc
Confidence 33445566666678899999999999999999887778999999999999999999887662 468999988743 33
Q ss_pred CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
.++||+|++....++ ...+++++.+.|||||++++...
T Consensus 95 -~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 95 -PGKADAIFIGGSGGN---LTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred -CcCCCEEEECCCccC---HHHHHHHHHHhcCCCeEEEEEEe
Confidence 357999999876543 46789999999999999988654
No 64
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.58 E-value=1.4e-14 Score=122.62 Aligned_cols=109 Identities=18% Similarity=0.255 Sum_probs=89.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---CCCCccceEE
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVH 242 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~V~ 242 (304)
...+|||||||+|.++..+++..++.+++|+|+++.+++.|+++....++ .++.++++|+..++ ++++++|.|+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l---~ni~~i~~d~~~~~~~~~~~~~~d~v~ 92 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL---KNLHVLCGDANELLDKFFPDGSLSKVF 92 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC---CCEEEEccCHHHHHHhhCCCCceeEEE
Confidence 35699999999999999999998888999999999999999998887762 58999999997643 4566899999
Q ss_pred ecchhccCCC--------HHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 243 AGAALHCWPS--------PSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 243 ~~~vl~h~~d--------~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+.+...+... ...+++++.++|||||.|++.+...
T Consensus 93 ~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 93 LNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred EECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 8754322111 1468999999999999999987554
No 65
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.57 E-value=3.2e-14 Score=130.59 Aligned_cols=112 Identities=21% Similarity=0.288 Sum_probs=94.3
Q ss_pred HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC--CCCC
Q 021975 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFAS 235 (304)
Q Consensus 158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~ 235 (304)
+...+....+..+||||||+|.++..+++..|+..++|+|+++.+++.+.+++...++ .++.++++|+..+ .+++
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL---~NV~~i~~DA~~ll~~~~~ 190 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL---KNLLIINYDARLLLELLPS 190 (390)
T ss_pred HHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC---CcEEEEECCHHHhhhhCCC
Confidence 3444445556799999999999999999998888999999999999999999988763 6899999998654 4778
Q ss_pred CccceEEecchhccCCCH-----------HHHHHHHHHhcccCcEEEEEEeCC
Q 021975 236 GFVDAVHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~-----------~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+++|.|++.+ ++| ..+++++.|+|+|||.+.+.|-..
T Consensus 191 ~s~D~I~lnF-----PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 191 NSVEKIFVHF-----PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred CceeEEEEeC-----CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 9999999854 454 578999999999999999977443
No 66
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.57 E-value=4.9e-14 Score=121.56 Aligned_cols=111 Identities=23% Similarity=0.383 Sum_probs=90.4
Q ss_pred HHHHHHhhc--ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975 155 FKMAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (304)
Q Consensus 155 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (304)
.+.+.+++. ..++.+|||+|||+|.++..+++.+. +++|+|+++.++..|++++...+ ...++.+.++|+..++
T Consensus 42 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~~~ 117 (219)
T TIGR02021 42 RRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQGRD--VAGNVEFEVNDLLSLC 117 (219)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECChhhCC
Confidence 344445554 34678999999999999999998765 99999999999999999987665 2357999999998875
Q ss_pred CCCCccceEEecchhccCCC--HHHHHHHHHHhcccCcEEEE
Q 021975 233 FASGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVG 272 (304)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~lvi 272 (304)
++||+|++..+++|++. ...+++++.+++++++++.+
T Consensus 118 ---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 118 ---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred ---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 68999999999999864 46789999999987665554
No 67
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.57 E-value=1.9e-14 Score=118.85 Aligned_cols=105 Identities=16% Similarity=0.329 Sum_probs=87.9
Q ss_pred HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-CC-C
Q 021975 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-F 233 (304)
Q Consensus 156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-~ 233 (304)
+.+.+++.+ +.+|||+|||.|.++..|.+.- +.+.+|+|++++.+..+.+ .++.++++|++. ++ |
T Consensus 5 ~~I~~~I~p--gsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~----------rGv~Viq~Dld~gL~~f 71 (193)
T PF07021_consen 5 QIIAEWIEP--GSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVA----------RGVSVIQGDLDEGLADF 71 (193)
T ss_pred HHHHHHcCC--CCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHH----------cCCCEEECCHHHhHhhC
Confidence 345555544 7899999999999999999863 5699999999999988877 578899999965 43 8
Q ss_pred CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
++++||.|+++.+|+++.+|..+|+|+.|+ |...+++.++
T Consensus 72 ~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPN 111 (193)
T PF07021_consen 72 PDQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPN 111 (193)
T ss_pred CCCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecC
Confidence 899999999999999999999999999776 4456665554
No 68
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.57 E-value=7.4e-14 Score=120.03 Aligned_cols=110 Identities=23% Similarity=0.226 Sum_probs=86.1
Q ss_pred cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC---------ccCCCCeEEEEccCCCCCCC-
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN---------TILTSNLALVRADVCRLPFA- 234 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~~~~~i~~~~~d~~~lp~~- 234 (304)
.++.+|||+|||.|..+..|+++|. +|+|+|+|+.+++.+.+...... .....++++.++|+.+++..
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~--~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC--eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 4567999999999999999999988 99999999999998743211100 00135789999999887533
Q ss_pred CCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeC
Q 021975 235 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
.+.||+|+...+++|++.. ..+++.+.++|||||++++.++.
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~ 157 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLD 157 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 2589999999999999743 47899999999999976654443
No 69
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.56 E-value=6.6e-14 Score=120.97 Aligned_cols=107 Identities=26% Similarity=0.374 Sum_probs=93.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC-CCccceEEec
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAG 244 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~ 244 (304)
.+.+|||+|||+|.++..+++.+. +++|+|+++.+++.+++++...+ ..++.+..+|+.+.+.. .++||+|++.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~D~i~~~ 119 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDP---LLKIEYRCTSVEDLAEKGAKSFDVVTCM 119 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcC---CCceEEEeCCHHHhhcCCCCCccEEEeh
Confidence 467999999999999999988775 79999999999999999887654 12688999998776644 3789999999
Q ss_pred chhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
++++|+.++..+++++.++|+|||.+++.+...
T Consensus 120 ~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 120 EVLEHVPDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred hHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 999999999999999999999999999887643
No 70
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.56 E-value=9e-14 Score=119.61 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=92.0
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (304)
Q Consensus 154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (304)
....+.+.+...++.+|||||||+|.++..+++... ..+|+++|+++.+++.|+++++..+ ..++.++.+|.....
T Consensus 65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g---~~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG---LDNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC---CCCeEEEECCcccCC
Confidence 445666677777889999999999999999998743 4579999999999999999998876 267999999997654
Q ss_pred CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
....+||+|++.....++ ...+.+.|||||++++..
T Consensus 142 ~~~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 142 EPLAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred cccCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEE
Confidence 445689999998776655 356788999999998865
No 71
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.54 E-value=2.6e-13 Score=115.22 Aligned_cols=118 Identities=17% Similarity=0.263 Sum_probs=93.9
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (304)
Q Consensus 153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (304)
+........+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.++++++..+ ...++.++.+|..+.
T Consensus 27 ~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g--~~~~v~~~~~d~~~~ 104 (198)
T PRK00377 27 EIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG--VLNNIVLIKGEAPEI 104 (198)
T ss_pred HHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC--CCCCeEEEEechhhh
Confidence 33444456667778899999999999999988775 455699999999999999999988876 346789999998663
Q ss_pred -CCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 232 -PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 232 -p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
+...+.||.|++.. ...++..+++++.+.|||||++++...
T Consensus 105 l~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 105 LFTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred HhhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 32246899999854 345778899999999999999987443
No 72
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.53 E-value=5.1e-14 Score=109.02 Aligned_cols=106 Identities=23% Similarity=0.359 Sum_probs=88.6
Q ss_pred CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--CCCCccceEEec
Q 021975 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAG 244 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~ 244 (304)
|.+|||+|||+|.++..+.+.+ ..+++|+|+++..++.++.++...+ ...+++++++|+.+.. +++++||+|+++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNG--LDDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCT--TTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHcc--CCceEEEEECchhhchhhccCceeEEEEEC
Confidence 4589999999999999999998 5699999999999999999999877 4578999999998765 778999999997
Q ss_pred chhccCC--------CHHHHHHHHHHhcccCcEEEEEEe
Q 021975 245 AALHCWP--------SPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 245 ~vl~h~~--------d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
-...... ....+++++.++|||||.+++.++
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 6554321 124789999999999999999875
No 73
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.53 E-value=1.6e-13 Score=126.46 Aligned_cols=121 Identities=13% Similarity=0.115 Sum_probs=95.9
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (304)
Q Consensus 154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (304)
-.+++.+.++....++|||+|||+|..+..+++.+|..+|+++|+|+.+++.++++++.++.....++.++..|.... +
T Consensus 216 GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~ 294 (378)
T PRK15001 216 GARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-V 294 (378)
T ss_pred HHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-C
Confidence 345677777665567999999999999999999988889999999999999999999877521123688998887542 3
Q ss_pred CCCccceEEecchhccC---CC--HHHHHHHHHHhcccCcEEEEEEe
Q 021975 234 ASGFVDAVHAGAALHCW---PS--PSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 234 ~~~~fD~V~~~~vl~h~---~d--~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
+.++||+|+++-.+|.. .+ ..++++++.++|||||.|+++..
T Consensus 295 ~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 295 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 45689999997655432 22 24789999999999999999864
No 74
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.52 E-value=1.6e-13 Score=117.35 Aligned_cols=100 Identities=22% Similarity=0.231 Sum_probs=80.4
Q ss_pred ccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--------CC
Q 021975 164 SAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA 234 (304)
Q Consensus 164 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~ 234 (304)
..++.+|||||||+|.++..+++.. +..+|+|+|+++ + . ...++.++++|+.+.+ +.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~---~~~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------D---PIVGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------c---CCCCcEEEecCCCChHHHHHHHHHhC
Confidence 3457899999999999999998874 446999999988 1 1 1256899999998853 56
Q ss_pred CCccceEEecchhccCCCH-----------HHHHHHHHHhcccCcEEEEEEeCC
Q 021975 235 SGFVDAVHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~-----------~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+++||+|++..+.++..++ ..+|+++.++|||||.|++..+..
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 7899999998766665443 357999999999999999988765
No 75
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.51 E-value=3.9e-13 Score=122.98 Aligned_cols=116 Identities=17% Similarity=0.215 Sum_probs=94.2
Q ss_pred HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (304)
Q Consensus 155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (304)
.+.+.+.+.....++|||+|||+|.++..+++.++..+++++|+++.+++.++++++.++ ....++.+|.... .
T Consensus 185 t~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~----l~~~~~~~D~~~~--~ 258 (342)
T PRK09489 185 SQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG----LEGEVFASNVFSD--I 258 (342)
T ss_pred HHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCEEEEcccccc--c
Confidence 345556565545568999999999999999999877899999999999999999998876 2456777787553 2
Q ss_pred CCccceEEecchhccCC-----CHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 235 SGFVDAVHAGAALHCWP-----SPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 235 ~~~fD~V~~~~vl~h~~-----d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
.+.||+|+++..+|+.. ....+++++.+.|||||.|+++...
T Consensus 259 ~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 259 KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 57899999998887632 3468899999999999999988753
No 76
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.51 E-value=1.4e-13 Score=116.50 Aligned_cols=97 Identities=16% Similarity=0.310 Sum_probs=79.7
Q ss_pred HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-C-CCC
Q 021975 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-PFA 234 (304)
Q Consensus 157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-l-p~~ 234 (304)
.+.+.+. ++.+|||+|||+|.++..+++.. ..+++|+|+++.+++.+++ .++.++++|+.+ + +++
T Consensus 6 ~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~----------~~~~~~~~d~~~~l~~~~ 72 (194)
T TIGR02081 6 SILNLIP--PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA----------RGVNVIQGDLDEGLEAFP 72 (194)
T ss_pred HHHHhcC--CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH----------cCCeEEEEEhhhcccccC
Confidence 4444544 46799999999999999887664 3488999999999998865 356788889865 4 367
Q ss_pred CCccceEEecchhccCCCHHHHHHHHHHhccc
Q 021975 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRS 266 (304)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkp 266 (304)
+++||+|++.+++||++++..+++++.+.+++
T Consensus 73 ~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 73 DKSFDYVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred CCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 78999999999999999999999999887664
No 77
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.51 E-value=3.4e-13 Score=116.98 Aligned_cols=108 Identities=22% Similarity=0.347 Sum_probs=84.8
Q ss_pred HHHHHHhhcc---cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975 155 FKMAQEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (304)
Q Consensus 155 ~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (304)
.+.+...+.. .++.+|||||||+|.++..+++.+. .++|+|+++.+++.|+++....+ ...++.+..+|+..
T Consensus 49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~- 123 (230)
T PRK07580 49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAG--LAGNITFEVGDLES- 123 (230)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CccCcEEEEcCchh-
Confidence 3344444433 4567999999999999999998876 89999999999999999887765 23578999998533
Q ss_pred CCCCCccceEEecchhccCCCH--HHHHHHHHHhcccCcE
Q 021975 232 PFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGV 269 (304)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~ 269 (304)
.+++||+|++..+++|++++ ..+++++.+.++++++
T Consensus 124 --~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 124 --LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred --ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEE
Confidence 36789999999999998755 4678888887654443
No 78
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.50 E-value=7.4e-13 Score=112.25 Aligned_cols=119 Identities=14% Similarity=0.134 Sum_probs=92.6
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-
Q 021975 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR- 230 (304)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~- 230 (304)
.+....+...+...++.+|||+|||+|.++..+++..+..+++++|+++.+++.++++++..+ ..++.++.+|+.+
T Consensus 26 ~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~---~~~v~~~~~d~~~~ 102 (196)
T PRK07402 26 REVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG---VKNVEVIEGSAPEC 102 (196)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCCeEEEECchHHH
Confidence 334445677777667889999999999999999877666799999999999999999998776 2579999998854
Q ss_pred CCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
++.....+|.|+... ..+...+++++.++|||||++++..+..
T Consensus 103 ~~~~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 103 LAQLAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred HhhCCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 222123467765532 2355789999999999999999988654
No 79
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.49 E-value=7.3e-13 Score=113.67 Aligned_cols=112 Identities=17% Similarity=0.132 Sum_probs=91.0
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (304)
Q Consensus 153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (304)
.....+...+...++.+|||+|||+|.++..+++... +++++|+++.+++.++++++..+ ..++.++.+|.....
T Consensus 65 ~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~ 139 (212)
T PRK00312 65 YMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLG---LHNVSVRHGDGWKGW 139 (212)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCC---CCceEEEECCcccCC
Confidence 3445666677777788999999999999988887764 89999999999999999998876 256999999986532
Q ss_pred CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
...++||+|++...++++ .+++.+.|+|||++++...
T Consensus 140 ~~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 PAYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 234789999998877665 3567889999999998775
No 80
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.47 E-value=3.3e-13 Score=109.18 Aligned_cols=108 Identities=22% Similarity=0.365 Sum_probs=91.9
Q ss_pred CeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchh
Q 021975 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 247 (304)
Q Consensus 168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl 247 (304)
.+|||+|||+|.++..|++.+....++|+|.|+.+++.|+...+..+ ....|.|.+.|+.+..+..+.||+|+-...+
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~--~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG--FSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC--CCcceeEEEeeccCCcccccceeEEeecCce
Confidence 39999999999999999999876779999999999999999888887 3455999999998877778899999987776
Q ss_pred ccCC--------CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 248 HCWP--------SPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 248 ~h~~--------d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
..+. .+..++..+.++|+|||+|+|+..+-
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 6543 12357888999999999999988664
No 81
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.47 E-value=8.3e-13 Score=119.26 Aligned_cols=113 Identities=20% Similarity=0.259 Sum_probs=84.3
Q ss_pred HHHHHHHHhhcc---cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcc--CCCCeEEEEcc
Q 021975 153 EEFKMAQEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRAD 227 (304)
Q Consensus 153 ~~~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~--~~~~i~~~~~d 227 (304)
...+.+.+++.. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.++++.+..... ...++.|...|
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~D 205 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAND 205 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcc
Confidence 344445555543 2567999999999999999999875 9999999999999999988654200 12467888888
Q ss_pred CCCCCCCCCccceEEecchhccCCCHH--HHHHHHHHhcccCcEEE
Q 021975 228 VCRLPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFV 271 (304)
Q Consensus 228 ~~~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~lv 271 (304)
+..+ +++||+|++..+++|+++.. .+++.+.+ +.+||.++
T Consensus 206 l~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 206 LESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred hhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 8654 57899999999999998653 45666664 45655544
No 82
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.47 E-value=2.6e-13 Score=111.28 Aligned_cols=85 Identities=24% Similarity=0.259 Sum_probs=74.2
Q ss_pred EEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEE
Q 021975 194 VALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT 273 (304)
Q Consensus 194 ~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~ 273 (304)
+|+|+|++|++.|+++.+..+.....++.++++|++++|+++++||+|++.++++|++|+..++++++|+|||||.|++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 48999999999998776532210234799999999999999999999999999999999999999999999999999999
Q ss_pred EeCCC
Q 021975 274 TFLRY 278 (304)
Q Consensus 274 ~~~~~ 278 (304)
++...
T Consensus 81 d~~~~ 85 (160)
T PLN02232 81 DFNKS 85 (160)
T ss_pred ECCCC
Confidence 98763
No 83
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.46 E-value=2.3e-12 Score=105.78 Aligned_cols=121 Identities=19% Similarity=0.224 Sum_probs=103.1
Q ss_pred CcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC
Q 021975 150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229 (304)
Q Consensus 150 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~ 229 (304)
+..+........|.+.++.+++|||||+|..+..++..++..+++++|-++++++..+++.+..+ .+++.++.+++.
T Consensus 18 TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg---~~n~~vv~g~Ap 94 (187)
T COG2242 18 TKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG---VDNLEVVEGDAP 94 (187)
T ss_pred cHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC---CCcEEEEeccch
Confidence 44556667778888999999999999999999999988999999999999999999999999997 589999999996
Q ss_pred CCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 230 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+.--...+||.|+.... .+.+.+++.+...|||||++++....-
T Consensus 95 ~~L~~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 95 EALPDLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred HhhcCCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 53212227999999887 356788999999999999999876543
No 84
>PRK04266 fibrillarin; Provisional
Probab=99.46 E-value=1.9e-12 Score=111.80 Aligned_cols=104 Identities=17% Similarity=0.233 Sum_probs=81.7
Q ss_pred hcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC----CCCCCc
Q 021975 162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGF 237 (304)
Q Consensus 162 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~ 237 (304)
+...++.+|||+|||+|.++..+++..+..+|+|+|+++.|++.+.++.+.. .++.++.+|+... ++. ++
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-----~nv~~i~~D~~~~~~~~~l~-~~ 141 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-----KNIIPILADARKPERYAHVV-EK 141 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-----CCcEEEECCCCCcchhhhcc-cc
Confidence 6666788999999999999999998754569999999999999887765432 5789999998652 222 46
Q ss_pred cceEEecchhccCCCHH---HHHHHHHHhcccCcEEEEEEeC
Q 021975 238 VDAVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 238 fD~V~~~~vl~h~~d~~---~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
||+|++. +.++. .+++++.++|||||.++++.+.
T Consensus 142 ~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~ 178 (226)
T PRK04266 142 VDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKA 178 (226)
T ss_pred CCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 9999853 33443 4689999999999999996543
No 85
>PRK14968 putative methyltransferase; Provisional
Probab=99.46 E-value=1.3e-12 Score=109.62 Aligned_cols=117 Identities=21% Similarity=0.262 Sum_probs=88.9
Q ss_pred HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (304)
Q Consensus 156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (304)
..+...+...++.+|||+|||+|.++..+++.+. +++|+|+++.+++.+++++...+. ...++.++.+|+.+ ++.+
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~~~~d~~~-~~~~ 88 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNGK--KVVGVDINPYAVECAKCNAKLNNI-RNNGVEVIRSDLFE-PFRG 88 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCHHHHHHHhhcc--eEEEEECCHHHHHHHHHHHHHcCC-CCcceEEEeccccc-cccc
Confidence 3444455445678999999999999999998854 999999999999999999887662 11128899999866 3455
Q ss_pred CccceEEecchhccCC---------------------CHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 236 GFVDAVHAGAALHCWP---------------------SPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 236 ~~fD~V~~~~vl~h~~---------------------d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
.+||+|+++..+.+.. ....+++++.++|||||.+++....
T Consensus 89 ~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 89 DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 6899999875443211 1346799999999999998887643
No 86
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.46 E-value=1.8e-12 Score=116.12 Aligned_cols=121 Identities=17% Similarity=0.225 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhc-ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975 152 DEEFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (304)
Q Consensus 152 ~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (304)
+.+.+.+...+. ..+..+|||+|||+|.++..++...+..+++|+|+|+.+++.|+++.+..+ ...++.++++|+.+
T Consensus 99 e~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~--~~~~v~~~~~d~~~ 176 (284)
T TIGR00536 99 EELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQ--LEHRVEFIQSNLFE 176 (284)
T ss_pred HHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhc
Confidence 334444443332 222368999999999999999998877899999999999999999998876 33469999999866
Q ss_pred CCCCCCccceEEec-------------chhccCC------------CHHHHHHHHHHhcccCcEEEEEEe
Q 021975 231 LPFASGFVDAVHAG-------------AALHCWP------------SPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 231 lp~~~~~fD~V~~~-------------~vl~h~~------------d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
+++..+||+|+++ .++.|-| ....+++++.++|+|||++++..-
T Consensus 177 -~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 177 -PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred -cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 3444589999985 2333333 234678999999999999887664
No 87
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.45 E-value=1.6e-12 Score=116.62 Aligned_cols=104 Identities=20% Similarity=0.304 Sum_probs=84.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (304)
++.+|||+|||+|.++..+++.+ ..+|+|+|+++.+++.|+++.+.++ ....+.+...+... ..+++||+|+++.
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~--~~~~~~~~~~~~~~--~~~~~fDlVvan~ 233 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQ--VSDRLQVKLIYLEQ--PIEGKADVIVANI 233 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcC--CCcceEEEeccccc--ccCCCceEEEEec
Confidence 57899999999999998888776 3589999999999999999998876 34556677666433 3367899999976
Q ss_pred hhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 246 vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
..++ ...++.++.++|||||+++++....
T Consensus 234 ~~~~---l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 234 LAEV---IKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred CHHH---HHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 5443 3578999999999999999988654
No 88
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.44 E-value=2.7e-12 Score=115.96 Aligned_cols=110 Identities=18% Similarity=0.208 Sum_probs=84.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-CCCCCC----ccc
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASG----FVD 239 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~----~fD 239 (304)
++.+|||+|||+|..+..+.+..+ ..+|+|+|+|++|++.+++++.... ...++.++++|+.+ +++... ...
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~--p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY--PQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC--CCceEEEEEEcccchhhhhcccccCCeE
Confidence 467899999999999999998854 3599999999999999999876543 23567788999876 333332 233
Q ss_pred eEEecchhccCCC--HHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 240 AVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 240 ~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
++++..+++|++. ...+|++++++|+|||.|++.....
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 4555567888763 3468999999999999999866544
No 89
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.44 E-value=3.3e-12 Score=109.65 Aligned_cols=110 Identities=14% Similarity=0.157 Sum_probs=89.4
Q ss_pred cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh---------cCccCCCCeEEEEccCCCCCCC-
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ---------DNTILTSNLALVRADVCRLPFA- 234 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~---------~~~~~~~~i~~~~~d~~~lp~~- 234 (304)
.++.+||+.|||.|..+..|++.|. +|+|+|+|+.+++.+.+.... .......+++++++|+.+++..
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 3568999999999999999999998 899999999999998663210 0001235799999999998632
Q ss_pred --CCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeC
Q 021975 235 --SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 235 --~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
.+.||+|+-...+.+++.. .+..+.+.++|+|||.+++.++.
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 2589999999999999744 47899999999999998888764
No 90
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.44 E-value=2.2e-12 Score=117.96 Aligned_cols=121 Identities=20% Similarity=0.264 Sum_probs=96.6
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (304)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (304)
..+...+.......++.+|||+|||+|.++..++..+. +++|+|+++.+++.++.+++..+. .++.++.+|+.++
T Consensus 168 ~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~~g~---~~i~~~~~D~~~l 242 (329)
T TIGR01177 168 PKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEHYGI---EDFFVKRGDATKL 242 (329)
T ss_pred HHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHHhCC---CCCeEEecchhcC
Confidence 34455555555666788999999999999988877665 999999999999999999988773 3488999999999
Q ss_pred CCCCCccceEEecchh------c-c-C-CCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 232 PFASGFVDAVHAGAAL------H-C-W-PSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 232 p~~~~~fD~V~~~~vl------~-h-~-~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
|+++++||+|++.... . + . .....+++++.++|||||++++..+..
T Consensus 243 ~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 243 PLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 9888899999996321 1 1 1 113678999999999999999888654
No 91
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.43 E-value=3.6e-13 Score=112.18 Aligned_cols=112 Identities=27% Similarity=0.398 Sum_probs=86.7
Q ss_pred HHHHHhhc--ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC-CCCC
Q 021975 156 KMAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLP 232 (304)
Q Consensus 156 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp 232 (304)
+...+.+. ..++.-|||||||+|..+..+...|+ ..+|+|+|+.|++.|.+.-- .-.++.+|+ +.+|
T Consensus 38 eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh--~wiGvDiSpsML~~a~~~e~--------egdlil~DMG~Glp 107 (270)
T KOG1541|consen 38 ERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH--QWIGVDISPSMLEQAVEREL--------EGDLILCDMGEGLP 107 (270)
T ss_pred HHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc--eEEeecCCHHHHHHHHHhhh--------hcCeeeeecCCCCC
Confidence 33344443 33477899999999999999999987 99999999999999997321 134667777 6689
Q ss_pred CCCCccceEEecchhccC-------CCHH----HHHHHHHHhcccCcEEEEEEeCC
Q 021975 233 FASGFVDAVHAGAALHCW-------PSPS----NAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~-------~d~~----~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
|+.++||.+++...+..+ .+|. .++..+..+|++|++.++..+-.
T Consensus 108 frpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 108 FRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred CCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 999999999987665443 2333 57888999999999999887654
No 92
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.43 E-value=3.5e-12 Score=114.16 Aligned_cols=107 Identities=21% Similarity=0.223 Sum_probs=85.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (304)
++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|+++.+.++ ...++.++.+|+.. ++++++||+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~--~~~~i~~~~~D~~~-~~~~~~fD~Iv~NP 197 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHG--LEDRVTLIQSDLFA-ALPGRKYDLIVSNP 197 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhh-ccCCCCccEEEECC
Confidence 4568999999999999999998777799999999999999999998877 34579999999854 23456899999851
Q ss_pred ------hhccC-----CCH--------------HHHHHHHHHhcccCcEEEEEEe
Q 021975 246 ------ALHCW-----PSP--------------SNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 246 ------vl~h~-----~d~--------------~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
.+.++ .+| ..+++++.++|+|||++++...
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 11111 122 3568889999999999987664
No 93
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=3.5e-12 Score=106.99 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=95.9
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (304)
Q Consensus 153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (304)
.+...+.+.+...++.+|||||||+|+.+..|++... +|+.+|..+...+.|+++++..+ ..++.++++|...--
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg---~~nV~v~~gDG~~G~ 133 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLG---YENVTVRHGDGSKGW 133 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcC---CCceEEEECCcccCC
Confidence 4556778888888999999999999999999999876 99999999999999999999987 467999999997643
Q ss_pred CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
-+...||.|+.......+|+. +.+.||+||++++-.-
T Consensus 134 ~~~aPyD~I~Vtaaa~~vP~~------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 134 PEEAPYDRIIVTAAAPEVPEA------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCCcCEEEEeeccCCCCHH------HHHhcccCCEEEEEEc
Confidence 345899999999888877644 5678999999998664
No 94
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.42 E-value=4.7e-12 Score=111.19 Aligned_cols=117 Identities=22% Similarity=0.284 Sum_probs=90.1
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (304)
Q Consensus 153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (304)
...+.+.+.+.. .+.+|||+|||+|.++..++...+..+++|+|+++.+++.++++++..+. .++.++.+|+.. +
T Consensus 75 ~l~~~~l~~~~~-~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~d~~~-~ 149 (251)
T TIGR03534 75 ELVEAALERLKK-GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL---DNVTFLQSDWFE-P 149 (251)
T ss_pred HHHHHHHHhccc-CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhc-c
Confidence 334444444433 35689999999999999999987777999999999999999999987762 479999999876 4
Q ss_pred CCCCccceEEecchh------ccCC--------------------CHHHHHHHHHHhcccCcEEEEEE
Q 021975 233 FASGFVDAVHAGAAL------HCWP--------------------SPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 233 ~~~~~fD~V~~~~vl------~h~~--------------------d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
+++++||+|+++-.. +++. ....+++++.++|+|||++++..
T Consensus 150 ~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 150 LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 567899999985321 1111 01357899999999999998865
No 95
>PRK14967 putative methyltransferase; Provisional
Probab=99.42 E-value=4.2e-12 Score=109.86 Aligned_cols=107 Identities=20% Similarity=0.202 Sum_probs=83.9
Q ss_pred ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEe
Q 021975 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (304)
Q Consensus 164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (304)
..++.+|||+|||+|.++..+++.+ ..+++++|+++.+++.++++++..+ .++.++.+|+... +++++||+|++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~----~~~~~~~~d~~~~-~~~~~fD~Vi~ 107 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAG----VDVDVRRGDWARA-VEFRPFDVVVS 107 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhC----CeeEEEECchhhh-ccCCCeeEEEE
Confidence 3456799999999999999988875 3599999999999999999887765 3688899998663 45678999999
Q ss_pred cchhccCCC---------------------HHHHHHHHHHhcccCcEEEEEEeC
Q 021975 244 GAALHCWPS---------------------PSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 244 ~~vl~h~~d---------------------~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
+-...+... ...+++++.++|||||++++....
T Consensus 108 npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 108 NPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 743221111 345788999999999999986543
No 96
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=4.9e-12 Score=108.37 Aligned_cols=118 Identities=21% Similarity=0.274 Sum_probs=103.8
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (304)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (304)
.....++..++...++.+|||.|.|+|.++.+|+.. ++.++|+.+|+.++..+.|+++++..+ ..+++.+..+|+.+
T Consensus 80 PKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~--l~d~v~~~~~Dv~~ 157 (256)
T COG2519 80 PKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG--LGDRVTLKLGDVRE 157 (256)
T ss_pred CCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc--cccceEEEeccccc
Confidence 345567888888899999999999999999999975 777899999999999999999999987 45669999999988
Q ss_pred CCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
.-+.+ .||+|+.. +++|..+++.+...|||||.+++..++-
T Consensus 158 ~~~~~-~vDav~LD-----mp~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 158 GIDEE-DVDAVFLD-----LPDPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred ccccc-ccCEEEEc-----CCChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 66655 89999985 5899999999999999999999888765
No 97
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.41 E-value=2.6e-12 Score=121.53 Aligned_cols=128 Identities=18% Similarity=0.210 Sum_probs=98.9
Q ss_pred HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC-
Q 021975 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF- 233 (304)
Q Consensus 155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~- 233 (304)
...+...+...++.+|||+|||+|..+..+++..+.++++++|+++.+++.++++++..+. ...+.+..+|....+.
T Consensus 227 s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~--~~~v~~~~~d~~~~~~~ 304 (426)
T TIGR00563 227 AQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL--TIKAETKDGDGRGPSQW 304 (426)
T ss_pred HHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEecccccccccc
Confidence 3455566777788999999999999999999875457999999999999999999998873 2334457777665443
Q ss_pred -CCCccceEEe------cchhccCCC----------------HHHHHHHHHHhcccCcEEEEEEeCCCCCCccc
Q 021975 234 -ASGFVDAVHA------GAALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSL 284 (304)
Q Consensus 234 -~~~~fD~V~~------~~vl~h~~d----------------~~~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~ 284 (304)
..++||.|++ .+++.+.++ ...+|+++.++|||||+|+.+|..-....+..
T Consensus 305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~ 378 (426)
T TIGR00563 305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSE 378 (426)
T ss_pred ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHH
Confidence 4678999995 356766665 24789999999999999999987664444433
No 98
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.40 E-value=1.7e-12 Score=110.56 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=88.4
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (304)
Q Consensus 153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (304)
.....+.+.+...++.+|||||||+|+++..++.. ++...|+++|.++..++.|+++++..+ ..++.++.+|....
T Consensus 59 ~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~---~~nv~~~~gdg~~g 135 (209)
T PF01135_consen 59 SMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG---IDNVEVVVGDGSEG 135 (209)
T ss_dssp HHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT---THSEEEEES-GGGT
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc---cCceeEEEcchhhc
Confidence 34566777788888999999999999999999987 555589999999999999999999887 35899999998654
Q ss_pred CCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
--....||.|++......++ ..+.+.||+||++++-.-
T Consensus 136 ~~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 136 WPEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp TGGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred cccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEEc
Confidence 33457899999998776543 346778999999998664
No 99
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.39 E-value=8.3e-12 Score=112.80 Aligned_cols=105 Identities=21% Similarity=0.223 Sum_probs=84.3
Q ss_pred CeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc--
Q 021975 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA-- 245 (304)
Q Consensus 168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~-- 245 (304)
.+|||+|||+|.++..++...+..+++|+|+|+.+++.|+++++..+ ...++.++++|+.+ ++++++||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~--l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHG--LEDRVTLIESDLFA-ALPGRRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC--CCCcEEEEECchhh-hCCCCCccEEEECCCC
Confidence 68999999999999999998777899999999999999999998876 34579999999854 23456899999861
Q ss_pred ----h-------hccCCC------------HHHHHHHHHHhcccCcEEEEEEe
Q 021975 246 ----A-------LHCWPS------------PSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 246 ----v-------l~h~~d------------~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
. ++|-+. ...+++++.++|+|||++++...
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0 122221 13678999999999999998653
No 100
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.39 E-value=5e-12 Score=94.09 Aligned_cols=101 Identities=27% Similarity=0.404 Sum_probs=85.2
Q ss_pred eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC-CCCccceEEecchh
Q 021975 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHAGAAL 247 (304)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~V~~~~vl 247 (304)
+|+|+|||.|.++..+.+ ....+++++|+++..+..+++..... ...++.++..|+.+... ..++||+|++..++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL---LADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc---cccceEEEEcChhhhccccCCceEEEEEccce
Confidence 589999999999999988 33569999999999999998543332 24678999999987653 46789999999999
Q ss_pred cc-CCCHHHHHHHHHHhcccCcEEEEE
Q 021975 248 HC-WPSPSNAVAEISRILRSGGVFVGT 273 (304)
Q Consensus 248 ~h-~~d~~~~l~~~~r~LkpgG~lvi~ 273 (304)
++ ..+...+++.+.+.|+|||.+++.
T Consensus 77 ~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 99 778889999999999999999876
No 101
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.39 E-value=5.9e-12 Score=119.08 Aligned_cols=120 Identities=17% Similarity=0.255 Sum_probs=93.4
Q ss_pred HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--C
Q 021975 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--F 233 (304)
Q Consensus 156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~ 233 (304)
..+...+...++.+|||+|||+|..+..+++.++..+|+++|+++.+++.++++++..+ .++.++++|+..++ +
T Consensus 234 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g----~~~~~~~~D~~~~~~~~ 309 (427)
T PRK10901 234 QLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG----LKATVIVGDARDPAQWW 309 (427)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEcCcccchhhc
Confidence 34445666677889999999999999999988655699999999999999999998876 34789999998754 3
Q ss_pred CCCccceEEecc------hhccCC------CH----------HHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975 234 ASGFVDAVHAGA------ALHCWP------SP----------SNAVAEISRILRSGGVFVGTTFLRYT 279 (304)
Q Consensus 234 ~~~~fD~V~~~~------vl~h~~------d~----------~~~l~~~~r~LkpgG~lvi~~~~~~~ 279 (304)
..++||.|++.. ++.+-+ .+ ..+++++.++|||||+++++|..-..
T Consensus 310 ~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 377 (427)
T PRK10901 310 DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP 377 (427)
T ss_pred ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 457899999532 222211 11 36899999999999999998865543
No 102
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.39 E-value=4.8e-12 Score=111.34 Aligned_cols=99 Identities=23% Similarity=0.377 Sum_probs=76.8
Q ss_pred cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (304)
.++.+|||+|||+|.++..+++.+. .+++|+|+++.+++.|+++.+.++ ....+.+..++ .+||+|+++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~--~~~~~~~~~~~--------~~fD~Vvan 186 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNG--VELNVYLPQGD--------LKADVIVAN 186 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcC--CCceEEEccCC--------CCcCEEEEc
Confidence 3578999999999999988888765 369999999999999999988776 22333333222 279999987
Q ss_pred chhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
...+. ...++.++.++|||||++++.....
T Consensus 187 i~~~~---~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 187 ILANP---LLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred CcHHH---HHHHHHHHHHhcCCCcEEEEEECcH
Confidence 54332 3567899999999999999987654
No 103
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.38 E-value=4.8e-12 Score=119.87 Aligned_cols=123 Identities=17% Similarity=0.261 Sum_probs=98.4
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (304)
Q Consensus 154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (304)
....+...+...++.+|||+|||+|..+..+++.. ..++++++|+++.+++.++++++..+. .++.++.+|+..++
T Consensus 240 ~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~---~~v~~~~~D~~~~~ 316 (434)
T PRK14901 240 SAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL---KSIKILAADSRNLL 316 (434)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC---CeEEEEeCChhhcc
Confidence 33445556677778899999999999999998873 346999999999999999999998873 56999999998765
Q ss_pred ----CCCCccceEEec------chhccCCC----------------HHHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975 233 ----FASGFVDAVHAG------AALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYT 279 (304)
Q Consensus 233 ----~~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~~~r~LkpgG~lvi~~~~~~~ 279 (304)
+..++||.|++. .++.+-++ ...+|.++.++|||||+|+.+|..-.+
T Consensus 317 ~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~ 389 (434)
T PRK14901 317 ELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP 389 (434)
T ss_pred cccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 445789999973 45665554 346799999999999999988866543
No 104
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.38 E-value=6.7e-12 Score=113.67 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=89.0
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (304)
Q Consensus 154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (304)
....+.+.+...++.+|||||||+|.++..+++... ...|+++|+++.+++.|+++++..+ ..++.++.+|+...+
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g---~~nV~~i~gD~~~~~ 144 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG---IENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeCChhhcc
Confidence 334455556666788999999999999999988753 2479999999999999999998876 367999999987665
Q ss_pred CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
...++||+|++...++++ ...+.+.|+|||++++..
T Consensus 145 ~~~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 PEFAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cccCCccEEEECCchHHh------HHHHHHhcCCCCEEEEEe
Confidence 455689999998766654 234678999999988855
No 105
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.37 E-value=4.7e-12 Score=109.33 Aligned_cols=118 Identities=12% Similarity=0.221 Sum_probs=95.9
Q ss_pred HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--CC
Q 021975 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FA 234 (304)
Q Consensus 157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~ 234 (304)
++..+......++|||+|||+|..+..++.+.+..+++|+|+.+.+.+.|+++++.++ ...+++++++|+.++. ..
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~--l~~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP--LEERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc--chhceeEehhhHHHhhhccc
Confidence 3455566556889999999999999999999666899999999999999999999988 6799999999998764 33
Q ss_pred CCccceEEecchhccC------------------CCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 235 SGFVDAVHAGAALHCW------------------PSPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 235 ~~~fD~V~~~~vl~h~------------------~d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
..+||+|+|+--..-. .+.+.+++...++||+||.+.++-..
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence 4579999996332211 13346789999999999999987743
No 106
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.36 E-value=7.6e-12 Score=105.74 Aligned_cols=101 Identities=22% Similarity=0.420 Sum_probs=83.6
Q ss_pred CeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-C--CCCCccceEEec
Q 021975 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P--FASGFVDAVHAG 244 (304)
Q Consensus 168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p--~~~~~fD~V~~~ 244 (304)
..+||||||.|.++..++...|+..++|+|+....+..+.+++...+ ..|+.++++|+..+ . ++++++|.|+..
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~---l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG---LKNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT---TSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc---ccceEEEEccHHHHHhhcccCCchheEEEe
Confidence 38999999999999999999999999999999999999999998886 48999999999872 2 557899999986
Q ss_pred chhccCCCHH-------------HHHHHHHHhcccCcEEEEEEeC
Q 021975 245 AALHCWPSPS-------------NAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 245 ~vl~h~~d~~-------------~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
+ |||. .+++.+.++|+|||.|.+.|=.
T Consensus 96 F-----PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 96 F-----PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp S----------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred C-----CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 5 6663 6899999999999999998843
No 107
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.36 E-value=2.3e-11 Score=108.40 Aligned_cols=119 Identities=21% Similarity=0.261 Sum_probs=89.4
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (304)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (304)
+...+.+.......++.+|||+|||+|.++..++...+..+++|+|+++.+++.++++++ .. ...++.++.+|+..
T Consensus 94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~--~~~~i~~~~~d~~~- 169 (275)
T PRK09328 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HG--LGARVEFLQGDWFE- 169 (275)
T ss_pred HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hC--CCCcEEEEEccccC-
Confidence 344444444444556779999999999999999998877799999999999999999887 22 24689999999855
Q ss_pred CCCCCccceEEecchh------c--------cC------------CCHHHHHHHHHHhcccCcEEEEEE
Q 021975 232 PFASGFVDAVHAGAAL------H--------CW------------PSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 232 p~~~~~fD~V~~~~vl------~--------h~------------~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
++..++||+|+++... + |- .....+++++.++|||||++++..
T Consensus 170 ~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 170 PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 2335789999985221 1 11 112457888889999999999854
No 108
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.6e-11 Score=108.27 Aligned_cols=132 Identities=16% Similarity=0.276 Sum_probs=102.4
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (304)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (304)
+.-.+.+.+.+....+++|||+|||.|.++..+++..|..+++-+|++..+++.+++++..++. .+..++..|...
T Consensus 144 D~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~---~~~~v~~s~~~~- 219 (300)
T COG2813 144 DKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV---ENTEVWASNLYE- 219 (300)
T ss_pred ChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCC---CccEEEEecccc-
Confidence 3345677777877767799999999999999999999999999999999999999999998873 333566666644
Q ss_pred CCCCCccceEEecchhccCCCH-----HHHHHHHHHhcccCcEEEEEEeCCCCCCcccccccc
Q 021975 232 PFASGFVDAVHAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVL 289 (304)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~-----~~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~~~~~~ 289 (304)
+..+ +||+|+++--+|-=.+. ++++++..+.|++||.|.++.. +..+....+.+.|
T Consensus 220 ~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan-~~l~y~~~L~~~F 280 (300)
T COG2813 220 PVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN-RHLPYEKKLKELF 280 (300)
T ss_pred cccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc-CCCChHHHHHHhc
Confidence 3334 99999998776643222 3789999999999999999887 4344444434444
No 109
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.35 E-value=1.4e-11 Score=106.13 Aligned_cols=105 Identities=17% Similarity=0.211 Sum_probs=87.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (304)
...++||||+|.|..+..++..+. +|++.|.|+.|....++ .+++++..+- ..-.+.+||+|.|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~----------kg~~vl~~~~--w~~~~~~fDvIscLN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSK----------KGFTVLDIDD--WQQTDFKFDVISCLN 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHh----------CCCeEEehhh--hhccCCceEEEeehh
Confidence 466899999999999999999877 99999999999777666 3445543332 332356899999999
Q ss_pred hhccCCCHHHHHHHHHHhcccCcEEEEEEeCCCCCCccc
Q 021975 246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL 284 (304)
Q Consensus 246 vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~ 284 (304)
+|..-.+|..+|+++++.|+|+|+++++....+.++..+
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~ 198 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEF 198 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEc
Confidence 999999999999999999999999999998877666655
No 110
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.35 E-value=1.6e-11 Score=111.65 Aligned_cols=111 Identities=26% Similarity=0.322 Sum_probs=81.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-------ccCCCCeEEEEccCCCCC----CC
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-------TILTSNLALVRADVCRLP----FA 234 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------~~~~~~i~~~~~d~~~lp----~~ 234 (304)
++.+|||+|||.|..+.-+...+ -..++|+|++...++.|+++.+... ........++.+|..... +.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 67899999999998887777765 3599999999999999999983211 001235678888875421 23
Q ss_pred --CCccceEEecchhccCCCH----HHHHHHHHHhcccCcEEEEEEeCC
Q 021975 235 --SGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 235 --~~~fD~V~~~~vl~h~~d~----~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
...||+|.|.+.||+.-.. ..+|+.+...|||||+|+++++..
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 3599999999999997533 358999999999999999999876
No 111
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.34 E-value=1.5e-11 Score=107.54 Aligned_cols=107 Identities=21% Similarity=0.311 Sum_probs=89.5
Q ss_pred HHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCcc
Q 021975 159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV 238 (304)
Q Consensus 159 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f 238 (304)
.......+..+|+|||+|.|.++..++++.|+.+++.+|. |..++.+++ ..++.++.+|+. -+++. +
T Consensus 93 ~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---------~~rv~~~~gd~f-~~~P~--~ 159 (241)
T PF00891_consen 93 LEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---------ADRVEFVPGDFF-DPLPV--A 159 (241)
T ss_dssp HHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---------TTTEEEEES-TT-TCCSS--E
T ss_pred hccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---------ccccccccccHH-hhhcc--c
Confidence 3344444567899999999999999999999999999997 888888888 278999999998 56665 9
Q ss_pred ceEEecchhccCCCHH--HHHHHHHHhcccC--cEEEEEEeCCC
Q 021975 239 DAVHAGAALHCWPSPS--NAVAEISRILRSG--GVFVGTTFLRY 278 (304)
Q Consensus 239 D~V~~~~vl~h~~d~~--~~l~~~~r~Lkpg--G~lvi~~~~~~ 278 (304)
|+|++.++||+++|.. .+|+++++.|+|| |+|+|.++..+
T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 9999999999998775 7899999999999 99999998754
No 112
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.34 E-value=3e-11 Score=105.15 Aligned_cols=121 Identities=21% Similarity=0.325 Sum_probs=97.7
Q ss_pred CcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC
Q 021975 150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 228 (304)
Q Consensus 150 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~ 228 (304)
.+...+.++...+...+|.+|||.|.|+|.++..|++. ++.++|+.+|+.++.++.|+++++.++ ...++.+...|+
T Consensus 24 iYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g--l~~~v~~~~~Dv 101 (247)
T PF08704_consen 24 IYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG--LDDNVTVHHRDV 101 (247)
T ss_dssp --HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT--CCTTEEEEES-G
T ss_pred eeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC--CCCCceeEecce
Confidence 34456678888899999999999999999999999986 788899999999999999999999998 567899999999
Q ss_pred CCCCCC---CCccceEEecchhccCCCHHHHHHHHHHhc-ccCcEEEEEEeCC
Q 021975 229 CRLPFA---SGFVDAVHAGAALHCWPSPSNAVAEISRIL-RSGGVFVGTTFLR 277 (304)
Q Consensus 229 ~~lp~~---~~~fD~V~~~~vl~h~~d~~~~l~~~~r~L-kpgG~lvi~~~~~ 277 (304)
....|. +..+|.|+.. +++|..++..+.+.| |+||++....++-
T Consensus 102 ~~~g~~~~~~~~~DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 102 CEEGFDEELESDFDAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp GCG--STT-TTSEEEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred ecccccccccCcccEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCCH
Confidence 654442 3679999984 589999999999999 9999999888764
No 113
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.32 E-value=2.4e-11 Score=104.31 Aligned_cols=119 Identities=19% Similarity=0.301 Sum_probs=87.9
Q ss_pred HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC---------ccCCCCeEEEE
Q 021975 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN---------TILTSNLALVR 225 (304)
Q Consensus 155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~~~~~i~~~~ 225 (304)
.+++.. +...++.+||..|||.|..+..|++.|. +|+|+|+|+.+++.+.+...... .....+|.+++
T Consensus 27 ~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~--~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
T PF05724_consen 27 VEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGH--DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC 103 (218)
T ss_dssp HHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTE--EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred HHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCC--eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence 333333 4555677999999999999999999997 99999999999999854322100 00234689999
Q ss_pred ccCCCCCCCC-CccceEEecchhccCC--CHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 226 ADVCRLPFAS-GFVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 226 ~d~~~lp~~~-~~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
+|+..++... ++||+|+-...|.-++ ......+.+.++|||||.+++.+..
T Consensus 104 gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~ 157 (218)
T PF05724_consen 104 GDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLE 157 (218)
T ss_dssp S-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred cccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 9999976433 4799999998888886 3357899999999999995554443
No 114
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.32 E-value=1.7e-11 Score=115.75 Aligned_cols=126 Identities=16% Similarity=0.213 Sum_probs=96.7
Q ss_pred HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-C
Q 021975 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F 233 (304)
Q Consensus 156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~ 233 (304)
..+...+...++.+|||+|||+|..+.+++... ...+|+++|+++.+++.++++++..+. .++.++.+|...++ +
T Consensus 227 ~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~---~~v~~~~~Da~~l~~~ 303 (431)
T PRK14903 227 QIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL---SSIEIKIADAERLTEY 303 (431)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhhhhhh
Confidence 344445666778899999999999999888863 356999999999999999999998873 46899999998765 4
Q ss_pred CCCccceEEec------chhccCCC----------------HHHHHHHHHHhcccCcEEEEEEeCCCCCCccc
Q 021975 234 ASGFVDAVHAG------AALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSL 284 (304)
Q Consensus 234 ~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~ 284 (304)
.+++||.|++. +++.+-++ ..++|.++.+.|||||+++.+|..-....+..
T Consensus 304 ~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~ 376 (431)
T PRK14903 304 VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTE 376 (431)
T ss_pred hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHH
Confidence 46789999963 23332221 13578999999999999999998764444433
No 115
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.32 E-value=1.9e-11 Score=108.36 Aligned_cols=117 Identities=18% Similarity=0.140 Sum_probs=91.4
Q ss_pred HhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCcc
Q 021975 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV 238 (304)
Q Consensus 160 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f 238 (304)
..+...++.+|||+|||+|..+..++... ..+.|+++|+++.+++.++++++..+. .++.++..|...++...+.|
T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~~~~~~f 141 (264)
T TIGR00446 65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV---LNVAVTNFDGRVFGAAVPKF 141 (264)
T ss_pred HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC---CcEEEecCCHHHhhhhccCC
Confidence 34556678899999999999999988763 235899999999999999999998872 57899999987766555679
Q ss_pred ceEEec------chhccCCC----------------HHHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975 239 DAVHAG------AALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYT 279 (304)
Q Consensus 239 D~V~~~------~vl~h~~d----------------~~~~l~~~~r~LkpgG~lvi~~~~~~~ 279 (304)
|.|++. .++.+-++ ...+|+++.+.|||||+|+.+|..-..
T Consensus 142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 999963 23332221 135899999999999999998876543
No 116
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.31 E-value=4.7e-11 Score=110.57 Aligned_cols=115 Identities=15% Similarity=0.126 Sum_probs=85.0
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (304)
Q Consensus 154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (304)
..+.+...+. ++.+|||+|||+|.++..++...+..+++|+|+|+.+++.|+++.+..+ .++.++++|+.+..+
T Consensus 241 LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g----~rV~fi~gDl~e~~l 314 (423)
T PRK14966 241 LVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG----ARVEFAHGSWFDTDM 314 (423)
T ss_pred HHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CcEEEEEcchhcccc
Confidence 3344443333 3569999999999999999987767799999999999999999998765 479999999865432
Q ss_pred -CCCccceEEecchhc-----cCC------CH--------------HHHHHHHHHhcccCcEEEEEE
Q 021975 234 -ASGFVDAVHAGAALH-----CWP------SP--------------SNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 234 -~~~~fD~V~~~~vl~-----h~~------d~--------------~~~l~~~~r~LkpgG~lvi~~ 274 (304)
..++||+|+++--.. +.. +| ..+++++.+.|+|||.+++..
T Consensus 315 ~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 315 PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 245799999954210 000 11 245677778999999987654
No 117
>PRK04457 spermidine synthase; Provisional
Probab=99.31 E-value=2.1e-11 Score=107.90 Aligned_cols=111 Identities=11% Similarity=0.137 Sum_probs=86.7
Q ss_pred cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-CCCCCccceEEe
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAVHA 243 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~ 243 (304)
.++.+|||||||+|.++..+++..+..+++++|+++.+++.|++.+...+ ..++++++.+|+.+. .-..++||+|++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~--~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE--NGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC--CCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 34678999999999999999998888899999999999999999876543 246899999998542 222358999997
Q ss_pred cchh-ccCC---CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 244 GAAL-HCWP---SPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 244 ~~vl-~h~~---d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
...- ...+ ....+++++.+.|+|||++++..+..
T Consensus 143 D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 143 DGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred eCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 5311 1111 12589999999999999999976654
No 118
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.31 E-value=1.8e-11 Score=103.05 Aligned_cols=108 Identities=20% Similarity=0.273 Sum_probs=79.4
Q ss_pred HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-
Q 021975 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP- 232 (304)
Q Consensus 155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp- 232 (304)
.+....+....++.+|||+|||+|.++..+++.. +..+++|+|+++.+ . ..++.++++|+.+.+
T Consensus 21 ~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~---------~~~i~~~~~d~~~~~~ 86 (188)
T TIGR00438 21 LQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P---------IENVDFIRGDFTDEEV 86 (188)
T ss_pred HHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c---------CCCceEEEeeCCChhH
Confidence 3444444455678899999999999999888774 44689999999854 1 146788888987642
Q ss_pred -------CCCCccceEEecch--------hccCC---CHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 233 -------FASGFVDAVHAGAA--------LHCWP---SPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 233 -------~~~~~fD~V~~~~v--------l~h~~---d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
++.++||+|++... ++|.. +...+++++.++|+|||++++..+.
T Consensus 87 ~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 87 LNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred HHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 34678999998543 22211 2357899999999999999997644
No 119
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.30 E-value=1.2e-11 Score=104.65 Aligned_cols=104 Identities=24% Similarity=0.264 Sum_probs=79.6
Q ss_pred eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhc
Q 021975 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 248 (304)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~ 248 (304)
.++|+|||+|..++-++.... +|+|+|+|+.|++.|++...... ..........+..++--.++++|+|++...+|
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y--~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTY--CHTPSTMSSDEMVDLLGGEESVDLITAAQAVH 111 (261)
T ss_pred eEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCccc--ccCCccccccccccccCCCcceeeehhhhhHH
Confidence 899999999988888888876 99999999999999988433221 12223333334444433488999999999887
Q ss_pred cCCCHHHHHHHHHHhcccCc-EEEEEEeCC
Q 021975 249 CWPSPSNAVAEISRILRSGG-VFVGTTFLR 277 (304)
Q Consensus 249 h~~d~~~~l~~~~r~LkpgG-~lvi~~~~~ 277 (304)
.+ |..++.+++.|+||+.| ++.+..+..
T Consensus 112 WF-dle~fy~~~~rvLRk~Gg~iavW~Y~d 140 (261)
T KOG3010|consen 112 WF-DLERFYKEAYRVLRKDGGLIAVWNYND 140 (261)
T ss_pred hh-chHHHHHHHHHHcCCCCCEEEEEEccC
Confidence 65 77889999999998866 788887773
No 120
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.29 E-value=3.8e-11 Score=114.14 Aligned_cols=121 Identities=16% Similarity=0.162 Sum_probs=92.8
Q ss_pred HHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (304)
Q Consensus 157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (304)
.....+...++.+|||+|||+|..+..+++.. ...+|+++|+++.+++.++++++..+. .++.++++|+..++ ++
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---~~v~~~~~Da~~~~-~~ 316 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI---TIIETIEGDARSFS-PE 316 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC---CeEEEEeCcccccc-cC
Confidence 34445556678899999999999988888753 245999999999999999999988772 47899999998765 45
Q ss_pred CccceEEec------chhccCC------C----------HHHHHHHHHHhcccCcEEEEEEeCCCCCC
Q 021975 236 GFVDAVHAG------AALHCWP------S----------PSNAVAEISRILRSGGVFVGTTFLRYTSS 281 (304)
Q Consensus 236 ~~fD~V~~~------~vl~h~~------d----------~~~~l~~~~r~LkpgG~lvi~~~~~~~~~ 281 (304)
++||+|++. .++.+-+ + ...+|+++.+.|||||+++..|..-....
T Consensus 317 ~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~E 384 (445)
T PRK14904 317 EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEE 384 (445)
T ss_pred CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhh
Confidence 789999962 2222111 1 23589999999999999999997664333
No 121
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.29 E-value=1.2e-11 Score=103.20 Aligned_cols=124 Identities=19% Similarity=0.339 Sum_probs=80.5
Q ss_pred chhhHHHHHhHHHhhhcCCCCCcHHHHHHHHHhhccc-CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Q 021975 129 PFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCY 207 (304)
Q Consensus 129 ~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~ 207 (304)
+-.-..|+.+++++...+... -.+.+.+++... +...|.|+|||.+.++..+... . +|+.+|+-.
T Consensus 38 P~~F~~YH~Gfr~Qv~~WP~n----Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~-~--~V~SfDLva------- 103 (219)
T PF05148_consen 38 PELFDIYHEGFRQQVKKWPVN----PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK-H--KVHSFDLVA------- 103 (219)
T ss_dssp HHHHHHHHHHHHHHHCTSSS-----HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS--------
T ss_pred HHHHHHHHHHHHHHHhcCCCC----cHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC-c--eEEEeeccC-------
Confidence 333456888888877654322 334455555543 3568999999999998766533 2 899999854
Q ss_pred HHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975 208 DFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 208 ~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
.+-.++.+|+..+|++++++|++++...|-- .|...++.|..|+|||||.|.|++..+.
T Consensus 104 -----------~n~~Vtacdia~vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~SR 162 (219)
T PF05148_consen 104 -----------PNPRVTACDIANVPLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKSR 162 (219)
T ss_dssp -----------SSTTEEES-TTS-S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred -----------CCCCEEEecCccCcCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEeccc
Confidence 3445788999999999999999999877665 4778899999999999999999998764
No 122
>PTZ00146 fibrillarin; Provisional
Probab=99.28 E-value=9.9e-11 Score=103.65 Aligned_cols=106 Identities=19% Similarity=0.200 Sum_probs=78.4
Q ss_pred cccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC---CCCCCcc
Q 021975 163 KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---PFASGFV 238 (304)
Q Consensus 163 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l---p~~~~~f 238 (304)
...++.+|||+|||+|.++..+++. ++...|+++|+++.+.+...+..+. ..++.++.+|+... .....+|
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----r~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----RPNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCCEEEECCccChhhhhcccCCC
Confidence 3457889999999999999999988 4456899999998766544443332 15788999998541 2224579
Q ss_pred ceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
|+|++... ...+...++.++.++|||||.|++...
T Consensus 204 DvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 204 DVIFADVA--QPDQARIVALNAQYFLKNGGHFIISIK 238 (293)
T ss_pred CEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEEe
Confidence 99999764 222334566799999999999999543
No 123
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.28 E-value=2.7e-11 Score=104.21 Aligned_cols=107 Identities=21% Similarity=0.310 Sum_probs=90.9
Q ss_pred hhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---CCCCc
Q 021975 161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF 237 (304)
Q Consensus 161 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~ 237 (304)
.+.......+||||||.|.++..++...|+..++|||+....+..|.+++.+.++ .|+.+++.|+..+- +++++
T Consensus 43 ~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l---~Nlri~~~DA~~~l~~~~~~~s 119 (227)
T COG0220 43 LFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL---KNLRLLCGDAVEVLDYLIPDGS 119 (227)
T ss_pred HhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC---CcEEEEcCCHHHHHHhcCCCCC
Confidence 3444334689999999999999999999999999999999999999999999872 39999999996632 45669
Q ss_pred cceEEecchhccCCCHH-------------HHHHHHHHhcccCcEEEEEEe
Q 021975 238 VDAVHAGAALHCWPSPS-------------NAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 238 fD~V~~~~vl~h~~d~~-------------~~l~~~~r~LkpgG~lvi~~~ 275 (304)
.|-|..++ |||. .+++.+.++|||||.|.+.|=
T Consensus 120 l~~I~i~F-----PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 120 LDKIYINF-----PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred eeEEEEEC-----CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 99999865 6662 689999999999999999884
No 124
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.28 E-value=1.6e-12 Score=108.89 Aligned_cols=122 Identities=20% Similarity=0.242 Sum_probs=94.8
Q ss_pred cCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEE
Q 021975 145 RSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224 (304)
Q Consensus 145 ~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~ 224 (304)
+-+|..+..+.++|... ...+-.++||+|||||..+..+...-. .++|+|+|.+|++.|.++- .--...
T Consensus 105 kL~Y~vP~~l~emI~~~-~~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg--------~YD~L~ 173 (287)
T COG4976 105 KLGYSVPELLAEMIGKA-DLGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKG--------LYDTLY 173 (287)
T ss_pred HhcCccHHHHHHHHHhc-cCCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhcc--------chHHHH
Confidence 34566666666666543 333467899999999999999998876 9999999999999998842 112334
Q ss_pred EccCCCC-C-CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 225 RADVCRL-P-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 225 ~~d~~~l-p-~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
++++..+ + ..+..||+|++..|+-++.+.+.++..+...|+|||.|.++.-..
T Consensus 174 ~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 174 VAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred HHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEeccc
Confidence 4444321 1 346789999999999999999999999999999999999987554
No 125
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.28 E-value=6.4e-11 Score=113.98 Aligned_cols=105 Identities=12% Similarity=0.137 Sum_probs=82.3
Q ss_pred CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc-
Q 021975 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA- 245 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~- 245 (304)
+.+|||+|||+|.++..++...+..+++++|+|+.+++.|+++++..+ ...++.++.+|+.. +++.++||+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~--l~~~v~~~~~D~~~-~~~~~~fDlIvsNPP 215 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE--VTDRIQIIHSNWFE-NIEKQKFDFIVSNPP 215 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC--Cccceeeeecchhh-hCcCCCccEEEECCC
Confidence 468999999999999999887777799999999999999999998776 34679999999754 23456899999842
Q ss_pred -------------hhccCCC------------HHHHHHHHHHhcccCcEEEEEE
Q 021975 246 -------------ALHCWPS------------PSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 246 -------------vl~h~~d------------~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
++.|-+. ...+++++.++|+|||.+++..
T Consensus 216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1222211 1246778889999999998753
No 126
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=4.8e-11 Score=105.72 Aligned_cols=116 Identities=22% Similarity=0.369 Sum_probs=86.9
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (304)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (304)
.--.+.+.+++. ++.+|||+|||+|-++.+.++.|. .+++|+|++|-+++.++++...++ ....+.....+....
T Consensus 150 ~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~--v~~~~~~~~~~~~~~ 224 (300)
T COG2264 150 SLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNG--VELLVQAKGFLLLEV 224 (300)
T ss_pred HHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcC--Cchhhhcccccchhh
Confidence 334556666655 588999999999999999999985 579999999999999999999887 222122222222222
Q ss_pred CCCCCccceEEecchhccCCCH-HHHHHHHHHhcccCcEEEEEEeCC
Q 021975 232 PFASGFVDAVHAGAALHCWPSP-SNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~-~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+ ..+.||+|+++= | .++ ..+..++.+.|||||+++++-...
T Consensus 225 ~-~~~~~DvIVANI-L---A~vl~~La~~~~~~lkpgg~lIlSGIl~ 266 (300)
T COG2264 225 P-ENGPFDVIVANI-L---AEVLVELAPDIKRLLKPGGRLILSGILE 266 (300)
T ss_pred c-ccCcccEEEehh-h---HHHHHHHHHHHHHHcCCCceEEEEeehH
Confidence 2 236999999974 2 233 367889999999999999998665
No 127
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.27 E-value=4.7e-11 Score=113.55 Aligned_cols=118 Identities=20% Similarity=0.254 Sum_probs=92.1
Q ss_pred HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--
Q 021975 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-- 232 (304)
Q Consensus 156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-- 232 (304)
..+...+...++.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++++..+. .++.++++|+..++
T Consensus 240 ~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~~~ 316 (444)
T PRK14902 240 MLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL---TNIETKALDARKVHEK 316 (444)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCCcccccch
Confidence 345556666678899999999999999998863 456999999999999999999988873 45999999997753
Q ss_pred CCCCccceEEecc------hhccCCCH----------------HHHHHHHHHhcccCcEEEEEEeCC
Q 021975 233 FASGFVDAVHAGA------ALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 233 ~~~~~fD~V~~~~------vl~h~~d~----------------~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
++ ++||+|++.. ++.+.++. ..+|+++.++|||||+|+.+|..-
T Consensus 317 ~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 317 FA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred hc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 33 6899999742 22222211 357999999999999999877654
No 128
>PHA03411 putative methyltransferase; Provisional
Probab=99.26 E-value=8.8e-11 Score=102.93 Aligned_cols=116 Identities=13% Similarity=0.140 Sum_probs=87.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc
Q 021975 147 GFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226 (304)
Q Consensus 147 ~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~ 226 (304)
.|.++..+...+. ......++|||+|||+|.++..++...+..+++|+|+++.+++.+++++ .++.++++
T Consensus 47 ~FfTP~~i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~--------~~v~~v~~ 116 (279)
T PHA03411 47 AFFTPEGLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL--------PEAEWITS 116 (279)
T ss_pred eEcCCHHHHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--------cCCEEEEC
Confidence 3566666653332 2233457999999999999888877654469999999999999998852 46889999
Q ss_pred cCCCCCCCCCccceEEecchhccCCCH--------------------HHHHHHHHHhcccCcEEEEE
Q 021975 227 DVCRLPFASGFVDAVHAGAALHCWPSP--------------------SNAVAEISRILRSGGVFVGT 273 (304)
Q Consensus 227 d~~~lp~~~~~fD~V~~~~vl~h~~d~--------------------~~~l~~~~r~LkpgG~lvi~ 273 (304)
|+..+.. +++||+|+++-.+.|.+.. ..+++....+|+|+|.+++.
T Consensus 117 D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 117 DVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred chhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 9987653 5689999998887775321 34667778899999977766
No 129
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.26 E-value=3.3e-11 Score=105.88 Aligned_cols=111 Identities=25% Similarity=0.372 Sum_probs=88.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcc---CCCCeEEEEccCCC------CCCCCC
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---LTSNLALVRADVCR------LPFASG 236 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~---~~~~i~~~~~d~~~------lp~~~~ 236 (304)
++..++|+|||.|..+..+-+.+ -..++|+||.+..++.|+++.+..... -...+.|+.+|... +++++.
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred cccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 47789999999999888888776 469999999999999999988654310 01236889998754 345566
Q ss_pred ccceEEecchhccCC----CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 237 FVDAVHAGAALHCWP----SPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 237 ~fD~V~~~~vl~h~~----d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+||+|.|-+++|+.- ....+|+++.+.|||||+++.+.+.+
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 699999999998853 33468999999999999999999876
No 130
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.26 E-value=6.3e-11 Score=103.11 Aligned_cols=117 Identities=13% Similarity=0.161 Sum_probs=91.5
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (304)
Q Consensus 153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (304)
...+++.......++.+|||+|||+|..+..++.. .+.++++++|+++.+++.|+++++..+ ...+++++.+|+.+.
T Consensus 55 ~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g--l~~~i~~~~gda~~~ 132 (234)
T PLN02781 55 DEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG--VDHKINFIQSDALSA 132 (234)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEccHHHH
Confidence 33445555555566789999999999988888876 346799999999999999999999988 457899999999653
Q ss_pred -C-----CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 232 -P-----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 232 -p-----~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
+ .+.++||+|+....- +....+++.+.++|||||++++..
T Consensus 133 L~~l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 133 LDQLLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred HHHHHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEc
Confidence 1 124689999986421 233578899999999999888754
No 131
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.25 E-value=4.5e-11 Score=106.76 Aligned_cols=111 Identities=23% Similarity=0.379 Sum_probs=82.8
Q ss_pred HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (304)
Q Consensus 155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (304)
.+.+.++. .++.+|||+|||+|-++...++.|. .+|+|+|+++.+++.|+++.+.++ ...++.+. ...+. .
T Consensus 152 l~~l~~~~--~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~--~~~~~~v~--~~~~~--~ 222 (295)
T PF06325_consen 152 LELLEKYV--KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNG--VEDRIEVS--LSEDL--V 222 (295)
T ss_dssp HHHHHHHS--STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT---TTCEEES--CTSCT--C
T ss_pred HHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcC--CCeeEEEE--Eeccc--c
Confidence 34444443 3478999999999999999999884 589999999999999999999998 44555442 22232 3
Q ss_pred CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
.+.||+|+++-..+- ...++..+.++|+|||+|+++-...
T Consensus 223 ~~~~dlvvANI~~~v---L~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 223 EGKFDLVVANILADV---LLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp CS-EEEEEEES-HHH---HHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred cccCCEEEECCCHHH---HHHHHHHHHHhhCCCCEEEEccccH
Confidence 589999999753321 2456788899999999999998765
No 132
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.24 E-value=2e-10 Score=101.01 Aligned_cols=103 Identities=22% Similarity=0.236 Sum_probs=78.5
Q ss_pred CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-CC-CCCccceEEec
Q 021975 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PF-ASGFVDAVHAG 244 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~-~~~~fD~V~~~ 244 (304)
..+|||+|||+|.++..+++..+..+++|+|+|+.+++.|+++++.++ +.++++|+.+. +- ..++||+|+++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~------~~~~~~D~~~~l~~~~~~~fDlVv~N 160 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG------GTVHEGDLYDALPTALRGRVDILAAN 160 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC------CEEEEeechhhcchhcCCCEeEEEEC
Confidence 458999999999999999887666699999999999999999987654 47888998652 21 13579999986
Q ss_pred chh------c--------cCC--------C----HHHHHHHHHHhcccCcEEEEEEe
Q 021975 245 AAL------H--------CWP--------S----PSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 245 ~vl------~--------h~~--------d----~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
--. . |-+ | ...+++.+.++|||||++++...
T Consensus 161 PPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 161 APYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred CCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 321 1 110 1 13567778899999999998764
No 133
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.24 E-value=1.6e-10 Score=95.63 Aligned_cols=108 Identities=9% Similarity=0.143 Sum_probs=81.8
Q ss_pred HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCC
Q 021975 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (304)
Q Consensus 157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 236 (304)
.+.+.+...++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++.. ..+++++.+|+.++++++.
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~--~v~~vE~~~~~~~~~~~~~~~-----~~~v~ii~~D~~~~~~~~~ 76 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLERAA--RVTAIEIDPRLAPRLREKFAA-----ADNLTVIHGDALKFDLPKL 76 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhcCC--eEEEEECCHHHHHHHHHHhcc-----CCCEEEEECchhcCCcccc
Confidence 445555556678999999999999999998854 999999999999999988753 2579999999999888777
Q ss_pred ccceEEecchhccCCCHHHHHHHHHHh--cccCcEEEEEE
Q 021975 237 FVDAVHAGAALHCWPSPSNAVAEISRI--LRSGGVFVGTT 274 (304)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~--LkpgG~lvi~~ 274 (304)
.||.|+++--++ +. ...+..+... +.++|++++..
T Consensus 77 ~~d~vi~n~Py~-~~--~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 77 QPYKVVGNLPYN-IS--TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred CCCEEEECCCcc-cH--HHHHHHHHhcCCCcceEEEEEEH
Confidence 799998875443 22 3445555443 34677776644
No 134
>PRK00811 spermidine synthase; Provisional
Probab=99.22 E-value=1.1e-10 Score=104.53 Aligned_cols=109 Identities=15% Similarity=0.242 Sum_probs=83.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC--ccCCCCeEEEEccCCCC-CCCCCccceEE
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN--TILTSNLALVRADVCRL-PFASGFVDAVH 242 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--~~~~~~i~~~~~d~~~l-p~~~~~fD~V~ 242 (304)
++.+||+||||+|..+..+.+.....+|+++|+++.+++.|++.+.... ....++++++.+|+... ...+++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4679999999999999999887445699999999999999999886432 00246899999998653 23467899999
Q ss_pred ecchhccCCC----HHHHHHHHHHhcccCcEEEEEE
Q 021975 243 AGAALHCWPS----PSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 243 ~~~vl~h~~d----~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
+...-.+.+. ...+++.+.+.|+|||++++..
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 8643222221 2567899999999999988753
No 135
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.22 E-value=6.3e-11 Score=100.33 Aligned_cols=106 Identities=22% Similarity=0.284 Sum_probs=87.1
Q ss_pred eEEEEcCCccHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC----CCCCCCccceEE
Q 021975 169 LLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASGFVDAVH 242 (304)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~~~fD~V~ 242 (304)
+|||||||.|....-+.+..++ ..+++.|.|+.+++..+++.+... .++.....|+.. .+...+++|+|+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e----~~~~afv~Dlt~~~~~~~~~~~svD~it 149 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE----SRVEAFVWDLTSPSLKEPPEEGSVDIIT 149 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch----hhhcccceeccchhccCCCCcCccceEE
Confidence 8999999999999888887665 789999999999999988665432 445555555532 346688999999
Q ss_pred ecchhccCC--CHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975 243 AGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 243 ~~~vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
+.+||..++ .-..++.++.++|||||.|++.+++++
T Consensus 150 ~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 150 LIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred EEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence 999998885 335789999999999999999999985
No 136
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=4.8e-10 Score=99.97 Aligned_cols=102 Identities=25% Similarity=0.383 Sum_probs=80.9
Q ss_pred eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecch--
Q 021975 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA-- 246 (304)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v-- 246 (304)
+|||+|||+|..+..++...+..+|+|+|+|+.+++.|+++.+.++ . .++.++.+|... +. .++||+|+++--
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~--l-~~~~~~~~dlf~-~~-~~~fDlIVsNPPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNG--L-VRVLVVQSDLFE-PL-RGKFDLIVSNPPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcC--C-ccEEEEeeeccc-cc-CCceeEEEeCCCCC
Confidence 7999999999999999999988899999999999999999999987 3 667777777655 23 348999999621
Q ss_pred ---hccC------CCHH--------------HHHHHHHHhcccCcEEEEEEe
Q 021975 247 ---LHCW------PSPS--------------NAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 247 ---l~h~------~d~~--------------~~l~~~~r~LkpgG~lvi~~~ 275 (304)
..+. .+|. .++.++.+.|+|||.+++-.-
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 1111 1231 467889999999998877653
No 137
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.18 E-value=2.1e-10 Score=97.89 Aligned_cols=123 Identities=19% Similarity=0.275 Sum_probs=92.2
Q ss_pred chhhHHHHHhHHHhhhcCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 021975 129 PFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD 208 (304)
Q Consensus 129 ~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~ 208 (304)
+..-..|+.+++.+...+..-..+.+++.|... .....|.|+|||.+.+.. .... .|+.+|+-.
T Consensus 146 p~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r---~~~~vIaD~GCGEakiA~---~~~~--kV~SfDL~a-------- 209 (325)
T KOG3045|consen 146 PTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRR---PKNIVIADFGCGEAKIAS---SERH--KVHSFDLVA-------- 209 (325)
T ss_pred cHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhC---cCceEEEecccchhhhhh---cccc--ceeeeeeec--------
Confidence 344456888888777654433333333333332 345789999999998765 2233 899999843
Q ss_pred HHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975 209 FIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
.+-+++.+|+.++|+++++.|++++..+|-- .|...++.|+.|+||+||.++|++..+.
T Consensus 210 ----------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~SR 268 (325)
T KOG3045|consen 210 ----------VNERVIACDMRNVPLEDESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKSR 268 (325)
T ss_pred ----------CCCceeeccccCCcCccCcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhhh
Confidence 5667889999999999999999998776553 5788899999999999999999998764
No 138
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.14 E-value=3.7e-10 Score=107.35 Aligned_cols=115 Identities=18% Similarity=0.315 Sum_probs=86.8
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-
Q 021975 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR- 230 (304)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~- 230 (304)
+.+.+.+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++++.++. .++.++++|+.+
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~--~V~gvD~s~~al~~A~~n~~~~~~---~~v~~~~~d~~~~ 357 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA--EVVGVEGVEAMVERARENARRNGL---DNVTFYHANLEED 357 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHcCC---CceEEEEeChHHh
Confidence 33455566666656678999999999999999998875 999999999999999999988762 579999999864
Q ss_pred ---CCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 231 ---LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 231 ---lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
.++.+++||+|++.---. .....++.+.+ ++|+++++++..
T Consensus 358 l~~~~~~~~~fD~Vi~dPPr~---g~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 358 FTDQPWALGGFDKVLLDPPRA---GAAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred hhhhhhhcCCCCEEEECcCCc---ChHHHHHHHHh-cCCCeEEEEEeC
Confidence 234456899999853211 12345555554 689998888763
No 139
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.13 E-value=6.1e-10 Score=94.83 Aligned_cols=121 Identities=13% Similarity=0.158 Sum_probs=95.4
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEE-ccCC
Q 021975 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVC 229 (304)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~~ 229 (304)
.+...++.........++|||||.+.|+.+..++...+ +.+++.+|+++++.+.|++++++.+ ...++..+. +|..
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag--~~~~i~~~~~gdal 122 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG--VDDRIELLLGGDAL 122 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC--CcceEEEEecCcHH
Confidence 34445555555556778999999999999999999876 7899999999999999999999999 566688888 4664
Q ss_pred CC-C-CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 230 RL-P-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 230 ~l-p-~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+. . ...++||+|+....= .+-..+++.+.++|+|||++++-....
T Consensus 123 ~~l~~~~~~~fDliFIDadK---~~yp~~le~~~~lLr~GGliv~DNvl~ 169 (219)
T COG4122 123 DVLSRLLDGSFDLVFIDADK---ADYPEYLERALPLLRPGGLIVADNVLF 169 (219)
T ss_pred HHHHhccCCCccEEEEeCCh---hhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence 32 1 346899999986521 133578999999999999888766544
No 140
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.12 E-value=4.6e-10 Score=104.68 Aligned_cols=111 Identities=17% Similarity=0.195 Sum_probs=83.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--C--CCCccceE
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--F--ASGFVDAV 241 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~--~~~~fD~V 241 (304)
++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.|+++++.+++ ...++.++++|+.+.. + ..++||+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~s~~al~~a~~N~~~Ngl-~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKL-DLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC-CCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 47899999999999988766554 45999999999999999999998873 1147899999986642 1 24689999
Q ss_pred Eecchhcc---------CCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975 242 HAGAALHC---------WPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 242 ~~~~vl~h---------~~d~~~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
++.--... ..+...++....++|+|||.|+..+....
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~ 343 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGL 343 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCc
Confidence 98632110 01223455677899999999998876553
No 141
>PLN02476 O-methyltransferase
Probab=99.10 E-value=1.3e-09 Score=96.36 Aligned_cols=119 Identities=13% Similarity=0.119 Sum_probs=92.5
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (304)
Q Consensus 153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (304)
...+++.......+.++|||||+++|+.+..++.. .++++++.+|.+++..+.|+++++..| ...+++++.+|+.+.
T Consensus 105 ~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG--l~~~I~li~GdA~e~ 182 (278)
T PLN02476 105 DQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG--VSHKVNVKHGLAAES 182 (278)
T ss_pred HHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHH
Confidence 33444555555566789999999999999999886 335689999999999999999999998 567899999998552
Q ss_pred -C-C----CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 232 -P-F----ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 232 -p-~----~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
+ + ..++||+|+...-= .+...+++.+.++|+|||++++-...
T Consensus 183 L~~l~~~~~~~~FD~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 183 LKSMIQNGEGSSYDFAFVDADK---RMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred HHHHHhcccCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 2 1 13689999996531 23457889999999999998875443
No 142
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.10 E-value=5.6e-10 Score=111.65 Aligned_cols=110 Identities=17% Similarity=0.182 Sum_probs=85.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-CCCCccceEEec
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAG 244 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~~ 244 (304)
++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.|+++++.+++ ...++.++++|+.+.. -..++||+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga-~~V~~vD~s~~al~~a~~N~~~ng~-~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGA-KSTTTVDMSNTYLEWAERNFALNGL-SGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCC-CccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 468999999999999999998763 4799999999999999999998873 1147999999986521 114689999985
Q ss_pred c-----------hhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 245 A-----------ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 245 ~-----------vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
- +.....+...++..+.++|+|||++++.+...
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 2 11112234567888999999999998877554
No 143
>PHA03412 putative methyltransferase; Provisional
Probab=99.10 E-value=1.2e-09 Score=93.72 Aligned_cols=113 Identities=15% Similarity=0.188 Sum_probs=82.5
Q ss_pred CCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeE
Q 021975 146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG---TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA 222 (304)
Q Consensus 146 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~ 222 (304)
..|.++..+.+.+... ...+.+|||+|||+|.++..+++.. +..+++++|+++.+++.|+++. .++.
T Consensus 31 GqFfTP~~iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--------~~~~ 100 (241)
T PHA03412 31 GAFFTPIGLARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--------PEAT 100 (241)
T ss_pred CccCCCHHHHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--------cCCE
Confidence 4567777776555422 2236799999999999999888752 2458999999999999999853 4588
Q ss_pred EEEccCCCCCCCCCccceEEecchhccC--CC----------HHHHHHHHHHhcccCcE
Q 021975 223 LVRADVCRLPFASGFVDAVHAGAALHCW--PS----------PSNAVAEISRILRSGGV 269 (304)
Q Consensus 223 ~~~~d~~~lp~~~~~fD~V~~~~vl~h~--~d----------~~~~l~~~~r~LkpgG~ 269 (304)
++.+|+...++ +++||+|+++--..-. .+ ...+++.+.+++++|+.
T Consensus 101 ~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 101 WINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred EEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 99999987665 5689999996433211 11 23578888887777664
No 144
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.09 E-value=1e-09 Score=93.28 Aligned_cols=117 Identities=14% Similarity=0.201 Sum_probs=90.6
Q ss_pred HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-C
Q 021975 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P 232 (304)
Q Consensus 155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p 232 (304)
.+++..+....+..+|||||+++|+.+..+++..+ +++++.+|+++...+.|++.++..+ ...+++++.+|+.+. +
T Consensus 34 g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag--~~~~I~~~~gda~~~l~ 111 (205)
T PF01596_consen 34 GQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG--LDDRIEVIEGDALEVLP 111 (205)
T ss_dssp HHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT--GGGGEEEEES-HHHHHH
T ss_pred HHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC--CCCcEEEEEeccHhhHH
Confidence 34444444455678999999999999999998744 6899999999999999999999988 467899999998542 1
Q ss_pred -----CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 233 -----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 233 -----~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
-..++||+|+....= .+....++.+.++|+|||++++-...
T Consensus 112 ~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 112 ELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp HHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred HHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEcccc
Confidence 113589999997632 23457788999999999988876544
No 145
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.09 E-value=1.4e-09 Score=96.71 Aligned_cols=109 Identities=14% Similarity=0.193 Sum_probs=81.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-ccCCCCeEEEEccCCCC-CCCCCccceEEe
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL-PFASGFVDAVHA 243 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~ 243 (304)
.+.+||+||||+|..+..+.+..+..+++++|+++.+++.+++.+...+ ....++++++.+|.... ....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 3459999999999999988887645689999999999999999875432 11235788888887442 222468999998
Q ss_pred cchhccCCC----HHHHHHHHHHhcccCcEEEEEE
Q 021975 244 GAALHCWPS----PSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 244 ~~vl~h~~d----~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
......-+. ..++++.+.+.|+|||++++..
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 654221111 3578899999999999999864
No 146
>PRK01581 speE spermidine synthase; Validated
Probab=99.09 E-value=5.8e-10 Score=101.39 Aligned_cols=110 Identities=18% Similarity=0.190 Sum_probs=80.8
Q ss_pred cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH--Hh--cCccCCCCeEEEEccCCC-CCCCCCccc
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI--KQ--DNTILTSNLALVRADVCR-LPFASGFVD 239 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~--~~--~~~~~~~~i~~~~~d~~~-lp~~~~~fD 239 (304)
....+||+||||+|..+..+.+..+..+++++|+++.+++.|++.. .. .+....++++++.+|+.+ +....+.||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 3457999999999999999998765579999999999999999721 10 010024789999999876 333456899
Q ss_pred eEEecchh--cc-CC--CHHHHHHHHHHhcccCcEEEEEE
Q 021975 240 AVHAGAAL--HC-WP--SPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 240 ~V~~~~vl--~h-~~--d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
+|++...- .+ .. .-..+++.+.+.|+|||++++..
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 99997421 00 00 11468999999999999988764
No 147
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.08 E-value=8.2e-10 Score=100.44 Aligned_cols=115 Identities=11% Similarity=0.176 Sum_probs=83.4
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (304)
Q Consensus 153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (304)
.+.+.+.+++...++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+++.+.++. .+++++++|+.++.
T Consensus 160 ~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~--~V~gvD~s~~av~~A~~n~~~~~l---~~v~~~~~D~~~~~ 234 (315)
T PRK03522 160 QLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGM--QLTGIEISAEAIACAKQSAAELGL---TNVQFQALDSTQFA 234 (315)
T ss_pred HHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHcCC---CceEEEEcCHHHHH
Confidence 3444455555544568999999999999999999765 999999999999999999988872 57999999997653
Q ss_pred C-CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 233 F-ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 233 ~-~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
. ..+.||+|++.---. .....+.++...++|+++++++..
T Consensus 235 ~~~~~~~D~Vv~dPPr~---G~~~~~~~~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 235 TAQGEVPDLVLVNPPRR---GIGKELCDYLSQMAPRFILYSSCN 275 (315)
T ss_pred HhcCCCCeEEEECCCCC---CccHHHHHHHHHcCCCeEEEEECC
Confidence 2 235799999863210 011223334445778887777664
No 148
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.07 E-value=2e-09 Score=90.38 Aligned_cols=121 Identities=19% Similarity=0.287 Sum_probs=92.1
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCe-EEEEccCCCC-
Q 021975 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL-ALVRADVCRL- 231 (304)
Q Consensus 154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i-~~~~~d~~~l- 231 (304)
+.+.+.+++... +.+|||||+|+|....++++..|..+..-.|+++......+..+...++ .++ .-+..|+...
T Consensus 14 Il~vL~~~l~~~-~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~---~Nv~~P~~lDv~~~~ 89 (204)
T PF06080_consen 14 ILEVLKQYLPDS-GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGL---PNVRPPLALDVSAPP 89 (204)
T ss_pred HHHHHHHHhCcc-CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCC---cccCCCeEeecCCCC
Confidence 456677776553 2269999999999999999999988999999999987777777766553 221 2233455443
Q ss_pred -CC------CCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCCC
Q 021975 232 -PF------ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 232 -p~------~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
+. ..++||+|++..++|-.+-. ..+++.+.++|++||.|++..+...
T Consensus 90 w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~ 145 (204)
T PF06080_consen 90 WPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNR 145 (204)
T ss_pred CccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCccc
Confidence 22 24589999999999988743 5789999999999999999887664
No 149
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.07 E-value=3.4e-09 Score=89.76 Aligned_cols=124 Identities=10% Similarity=0.102 Sum_probs=87.1
Q ss_pred CCcHHHHHHHHHhhcc-cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc
Q 021975 149 PGPDEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD 227 (304)
Q Consensus 149 ~~~~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d 227 (304)
+..+.+.+.+...+.. .++.+|||+|||+|.++..+...+ ..+|+++|.++.+++.++++++..+. .++.++++|
T Consensus 35 p~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~---~~v~~~~~D 110 (199)
T PRK10909 35 PTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKA---GNARVVNTN 110 (199)
T ss_pred cCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCC---CcEEEEEch
Confidence 3344444555555432 456799999999999998655554 25999999999999999999988873 479999999
Q ss_pred CCCC-CCCCCccceEEecchhccCCCHHHHHHHHHH--hcccCcEEEEEEeCC
Q 021975 228 VCRL-PFASGFVDAVHAGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTFLR 277 (304)
Q Consensus 228 ~~~l-p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r--~LkpgG~lvi~~~~~ 277 (304)
+... +...++||+|++.--... .-...+++.+.. +|+|+|++++.....
T Consensus 111 ~~~~l~~~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 111 ALSFLAQPGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred HHHHHhhcCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 8652 222457999999754221 122345555555 378999888876654
No 150
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.06 E-value=1.5e-09 Score=90.11 Aligned_cols=115 Identities=19% Similarity=0.157 Sum_probs=77.7
Q ss_pred ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----CCCCccc
Q 021975 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVD 239 (304)
Q Consensus 164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD 239 (304)
..++.+|||+|||+|..+..++......+|+..|.++ .++..+.+++.++.....++.+...|..+.. .....||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 4567899999999999999999884356999999999 9999999998765223456777777654411 3346899
Q ss_pred eEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975 240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT 279 (304)
Q Consensus 240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~~ 279 (304)
+|+...++..-.....+++.+.++|+++|.++++...+..
T Consensus 122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R~~ 161 (173)
T PF10294_consen 122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRRRK 161 (173)
T ss_dssp EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S-T
T ss_pred EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEecH
Confidence 9999999998777788999999999999998877766643
No 151
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.06 E-value=3.9e-10 Score=95.05 Aligned_cols=109 Identities=15% Similarity=0.161 Sum_probs=81.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (304)
...+.||.|+|.|+.+..+.... ..+|-.+|+.+..++.|++.+.... ..-..+++..+++.....++||+|++-+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~---~~v~~~~~~gLQ~f~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDN---PRVGEFYCVGLQDFTPEEGKYDLIWIQW 130 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGG---CCEEEEEES-GGG----TT-EEEEEEES
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccC---CCcceEEecCHhhccCCCCcEeEEEehH
Confidence 45689999999999998776553 3499999999999999998776522 2446788888887765567999999999
Q ss_pred hhccCCCHH--HHHHHHHHhcccCcEEEEEEeCCC
Q 021975 246 ALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 246 vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
++-|+.|.+ .+|+.+...|+|+|++++-+....
T Consensus 131 ~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~ 165 (218)
T PF05891_consen 131 CLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSS 165 (218)
T ss_dssp -GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred hhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCC
Confidence 999998665 899999999999999999887664
No 152
>PLN02366 spermidine synthase
Probab=99.05 E-value=2.5e-09 Score=96.40 Aligned_cols=108 Identities=17% Similarity=0.208 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc-cCCCCeEEEEccCCCC--CCCCCccceEE
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL--PFASGFVDAVH 242 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-~~~~~i~~~~~d~~~l--p~~~~~fD~V~ 242 (304)
+..+||+||||.|..+..+.+.....+++.+|+++.+++.+++.+...+. ...++++++.+|+... ..++++||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 46799999999999999999874446899999999999999998764210 1246899999997432 12256899999
Q ss_pred ecchhccCCC----HHHHHHHHHHhcccCcEEEEE
Q 021975 243 AGAALHCWPS----PSNAVAEISRILRSGGVFVGT 273 (304)
Q Consensus 243 ~~~vl~h~~d----~~~~l~~~~r~LkpgG~lvi~ 273 (304)
+...-.+.+. -..+++.+.+.|+|||+++..
T Consensus 171 ~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 171 VDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 8643322221 136899999999999998763
No 153
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.01 E-value=1.5e-09 Score=104.56 Aligned_cols=102 Identities=14% Similarity=0.184 Sum_probs=87.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC--CCCCCccceEEe
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHA 243 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~~ 243 (304)
....+||||||.|.++..++...|+..++|+|+....+..+.++....+ ..|+.++..|+..+ -++++++|.|+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~---l~N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN---ITNFLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC---CCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence 4668999999999999999999999999999999999999988887776 36888888887433 267889999999
Q ss_pred cchhccCCCHH-------------HHHHHHHHhcccCcEEEEEEe
Q 021975 244 GAALHCWPSPS-------------NAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 244 ~~vl~h~~d~~-------------~~l~~~~r~LkpgG~lvi~~~ 275 (304)
.+ |||. .+++.+.++|||||.+.+.|=
T Consensus 424 ~F-----PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 424 LF-----PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred EC-----CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 65 5663 689999999999999998874
No 154
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.00 E-value=3e-09 Score=100.93 Aligned_cols=113 Identities=17% Similarity=0.255 Sum_probs=84.4
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC--
Q 021975 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-- 231 (304)
Q Consensus 154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-- 231 (304)
+.+.+.+.+...++.+|||+|||+|.++..+++... +|+|+|+++.+++.|+++++.++ ..++.++.+|+.+.
T Consensus 280 l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~~---~~nv~~~~~d~~~~l~ 354 (431)
T TIGR00479 280 LVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELNG---IANVEFLAGTLETVLP 354 (431)
T ss_pred HHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHhC---CCceEEEeCCHHHHHH
Confidence 344555555555668999999999999999998865 99999999999999999998876 36899999998652
Q ss_pred --CCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 232 --PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 232 --p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
++.+.+||+|++.-.= ..-...+++.+. .++|++.++++.
T Consensus 355 ~~~~~~~~~D~vi~dPPr--~G~~~~~l~~l~-~l~~~~ivyvsc 396 (431)
T TIGR00479 355 KQPWAGQIPDVLLLDPPR--KGCAAEVLRTII-ELKPERIVYVSC 396 (431)
T ss_pred HHHhcCCCCCEEEECcCC--CCCCHHHHHHHH-hcCCCEEEEEcC
Confidence 2335679999974320 111245566655 488988777764
No 155
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.98 E-value=4.1e-09 Score=94.79 Aligned_cols=121 Identities=20% Similarity=0.266 Sum_probs=99.1
Q ss_pred cHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc-cCC
Q 021975 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVC 229 (304)
Q Consensus 151 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~ 229 (304)
..++.+.+.+.-...+|..|||-=||||.++....-.|. .++|.|++..|++-++.|++..+ .....+... |+.
T Consensus 182 ~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~--~viG~Did~~mv~gak~Nl~~y~---i~~~~~~~~~Da~ 256 (347)
T COG1041 182 DPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA--RVIGSDIDERMVRGAKINLEYYG---IEDYPVLKVLDAT 256 (347)
T ss_pred CHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc--eEeecchHHHHHhhhhhhhhhhC---cCceeEEEecccc
Confidence 456677788887888899999999999999999988877 99999999999999999999876 255656666 999
Q ss_pred CCCCCCCccceEEecchhcc-----CCC----HHHHHHHHHHhcccCcEEEEEEeC
Q 021975 230 RLPFASGFVDAVHAGAALHC-----WPS----PSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 230 ~lp~~~~~fD~V~~~~vl~h-----~~d----~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
.+|+++.+||.|++.--.-- ... ...+++.+.++||+||+++++.+.
T Consensus 257 ~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~ 312 (347)
T COG1041 257 NLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR 312 (347)
T ss_pred cCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC
Confidence 99999889999998421110 011 246899999999999999999983
No 156
>PRK03612 spermidine synthase; Provisional
Probab=98.98 E-value=2.5e-09 Score=103.44 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=81.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH--HHhcC--ccCCCCeEEEEccCCCC-CCCCCccce
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF--IKQDN--TILTSNLALVRADVCRL-PFASGFVDA 240 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~--~~~~~--~~~~~~i~~~~~d~~~l-p~~~~~fD~ 240 (304)
++++|||||||+|..+..+.+.....+++++|+++++++.++++ +...+ ....++++++.+|..+. ...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 46799999999999999998864336999999999999999983 22110 00236899999998663 223468999
Q ss_pred EEecchhccCCCH-----HHHHHHHHHhcccCcEEEEEE
Q 021975 241 VHAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 241 V~~~~vl~h~~d~-----~~~l~~~~r~LkpgG~lvi~~ 274 (304)
|++...-...+.+ .++++.+.+.|||||++++..
T Consensus 377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 9997543322222 358899999999999998865
No 157
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.97 E-value=4.6e-09 Score=91.71 Aligned_cols=117 Identities=12% Similarity=0.127 Sum_probs=91.7
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (304)
Q Consensus 153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (304)
...+++...+...+..+|||||+++|+.+..+++. .++++++.+|.++...+.|++.++..+ ...+++++.+++.+.
T Consensus 66 ~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag--~~~~I~~~~G~a~e~ 143 (247)
T PLN02589 66 DEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG--VAHKIDFREGPALPV 143 (247)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--CCCceEEEeccHHHH
Confidence 44455555555556789999999999999999876 346799999999999999999999998 568999999998552
Q ss_pred -C-C-----CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 232 -P-F-----ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 232 -p-~-----~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
+ + ..++||+|+..+-= .+....++.+.++|+|||++++-.
T Consensus 144 L~~l~~~~~~~~~fD~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 144 LDQMIEDGKYHGTFDFIFVDADK---DNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred HHHHHhccccCCcccEEEecCCH---HHhHHHHHHHHHhcCCCeEEEEcC
Confidence 2 1 13689999997531 123467888899999999977643
No 158
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.97 E-value=1.6e-08 Score=81.13 Aligned_cols=123 Identities=16% Similarity=0.299 Sum_probs=103.5
Q ss_pred CCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEE
Q 021975 147 GFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225 (304)
Q Consensus 147 ~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~ 225 (304)
-.|...-..+.+...+....+.-|||+|.|+|-++.++.+++ +...++.+|.+++......+. .+.+.++.
T Consensus 29 I~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~--------~p~~~ii~ 100 (194)
T COG3963 29 ILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL--------YPGVNIIN 100 (194)
T ss_pred ecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh--------CCCccccc
Confidence 356667777888888888888899999999999999999985 467899999999999999884 46778999
Q ss_pred ccCCCCC-----CCCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCC
Q 021975 226 ADVCRLP-----FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 226 ~d~~~lp-----~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+|+.++. +.+..||.|++.--+-.++-- .+.|+++...|.+||.++..++..
T Consensus 101 gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 101 GDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred cchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 9998764 567789999998776666533 378999999999999999999874
No 159
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.96 E-value=9.5e-10 Score=92.43 Aligned_cols=105 Identities=19% Similarity=0.299 Sum_probs=92.0
Q ss_pred CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecch
Q 021975 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 246 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 246 (304)
...++|||||-|.....+...+ -.+++-+|.|-.|++.++..-. ....+....+|-+.++|.+++||+|+++..
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qd-----p~i~~~~~v~DEE~Ldf~ens~DLiisSls 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQD-----PSIETSYFVGDEEFLDFKENSVDLIISSLS 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCC-----CceEEEEEecchhcccccccchhhhhhhhh
Confidence 5689999999999999999887 4699999999999999987321 123466778899999999999999999999
Q ss_pred hccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 247 LHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 247 l~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+|++.|...-+.+++-.|||+|.|+.+.+..
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~Fiasmlgg 177 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIASMLGG 177 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhHHhcc
Confidence 9999999999999999999999999877665
No 160
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.95 E-value=4.7e-09 Score=97.63 Aligned_cols=113 Identities=12% Similarity=0.147 Sum_probs=82.5
Q ss_pred HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC-
Q 021975 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF- 233 (304)
Q Consensus 155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~- 233 (304)
.+.+..++...++.+|||+|||+|.++..++..+. +|+|+|+++.+++.|+++.+.++. .++.++.+|+.+...
T Consensus 222 ~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~--~v~~vE~~~~av~~a~~N~~~~~~---~~~~~~~~d~~~~~~~ 296 (374)
T TIGR02085 222 YATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDT--QLTGIEIESEAIACAQQSAQMLGL---DNLSFAALDSAKFATA 296 (374)
T ss_pred HHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCC--eEEEEECCHHHHHHHHHHHHHcCC---CcEEEEECCHHHHHHh
Confidence 34444444434567999999999999999997764 999999999999999999988872 489999999865321
Q ss_pred CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
...+||+|++.---.. -...+++.+. .++|++++++...
T Consensus 297 ~~~~~D~vi~DPPr~G--~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 297 QMSAPELVLVNPPRRG--IGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred cCCCCCEEEECCCCCC--CcHHHHHHHH-hcCCCeEEEEEeC
Confidence 1246999998532111 1134455554 4799998888763
No 161
>PLN02672 methionine S-methyltransferase
Probab=98.95 E-value=1.3e-08 Score=104.45 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=82.8
Q ss_pred CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcc-------------CCCCeEEEEccCCCCCC
Q 021975 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-------------LTSNLALVRADVCRLPF 233 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~-------------~~~~i~~~~~d~~~lp~ 233 (304)
+.+|||+|||+|..+..+++..+..+++|+|+|+.+++.|+++.+.+++. ...++.++++|+.....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999887779999999999999999999875421 12479999999876331
Q ss_pred C-CCccceEEecch--------------hccCC------------------CH------HHHHHHHHHhcccCcEEEEEE
Q 021975 234 A-SGFVDAVHAGAA--------------LHCWP------------------SP------SNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 234 ~-~~~fD~V~~~~v--------------l~h~~------------------d~------~~~l~~~~r~LkpgG~lvi~~ 274 (304)
. ...||+|+++-- .+|-| +. .+++.+..++|||||.+++-.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 236999999521 11110 01 356788889999999888765
Q ss_pred eC
Q 021975 275 FL 276 (304)
Q Consensus 275 ~~ 276 (304)
-.
T Consensus 279 G~ 280 (1082)
T PLN02672 279 GG 280 (1082)
T ss_pred Cc
Confidence 43
No 162
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=1.1e-08 Score=84.10 Aligned_cols=74 Identities=24% Similarity=0.336 Sum_probs=64.4
Q ss_pred cccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEE
Q 021975 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (304)
Q Consensus 163 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~ 242 (304)
....+.+|+|+|||||.++...+-.|+ ..|+|+|+++++++.++++..+.. .++.|+.+|+.+. .+.+|.++
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~----g~v~f~~~dv~~~---~~~~dtvi 113 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELL----GDVEFVVADVSDF---RGKFDTVI 113 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhC----CceEEEEcchhhc---CCccceEE
Confidence 345678899999999999999998884 599999999999999999998743 7899999999887 46789888
Q ss_pred ec
Q 021975 243 AG 244 (304)
Q Consensus 243 ~~ 244 (304)
++
T Consensus 114 mN 115 (198)
T COG2263 114 MN 115 (198)
T ss_pred EC
Confidence 85
No 163
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.92 E-value=1.2e-08 Score=85.12 Aligned_cols=120 Identities=20% Similarity=0.259 Sum_probs=85.7
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCe---------EEEEeCCHHHHHHHHHHHHhcCccCCCCeE
Q 021975 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG---------VVALDFSENMLRQCYDFIKQDNTILTSNLA 222 (304)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~---------v~giD~s~~~~~~a~~~~~~~~~~~~~~i~ 222 (304)
+.+...+.......++..|||.-||+|.++.+.+..+.+.. ++|.|+++.+++.++++++..+ ....+.
T Consensus 14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag--~~~~i~ 91 (179)
T PF01170_consen 14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG--VEDYID 91 (179)
T ss_dssp HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---CGGEE
T ss_pred HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc--cCCceE
Confidence 34455666666666788999999999999988877755445 8999999999999999999888 456799
Q ss_pred EEEccCCCCCCCCCccceEEecchhccC-CC---H----HHHHHHHHHhcccCcEEEEEE
Q 021975 223 LVRADVCRLPFASGFVDAVHAGAALHCW-PS---P----SNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 223 ~~~~d~~~lp~~~~~fD~V~~~~vl~h~-~d---~----~~~l~~~~r~LkpgG~lvi~~ 274 (304)
+.+.|+..+++.++++|+|++.--.-.- .+ . ..+++++.++|++ ..+++.+
T Consensus 92 ~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~ 150 (179)
T PF01170_consen 92 FIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT 150 (179)
T ss_dssp EEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred EEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence 9999999999778899999996432211 11 1 2568899999999 4344433
No 164
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.91 E-value=6.8e-09 Score=92.93 Aligned_cols=103 Identities=20% Similarity=0.314 Sum_probs=83.6
Q ss_pred cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (304)
.++++|||+|||+|-++...++.| ..+|+++|.|. +++.|++.+..++ ....++++++.++++.+|..++|+|++-
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~-ia~~a~~iv~~N~--~~~ii~vi~gkvEdi~LP~eKVDiIvSE 134 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASS-IADFARKIVKDNG--LEDVITVIKGKVEDIELPVEKVDIIVSE 134 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechH-HHHHHHHHHHhcC--ccceEEEeecceEEEecCccceeEEeeh
Confidence 468899999999999999999998 57999999776 5599999999988 4567999999999887777899999985
Q ss_pred ch---hccCCCHHHHHHHHHHhcccCcEEE
Q 021975 245 AA---LHCWPSPSNAVAEISRILRSGGVFV 271 (304)
Q Consensus 245 ~v---l~h~~d~~~~l~~~~r~LkpgG~lv 271 (304)
+. |-+-.-...+|-.=-+.|+|||.++
T Consensus 135 WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 135 WMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 43 2222234456666678999999865
No 165
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.91 E-value=8.7e-09 Score=91.77 Aligned_cols=87 Identities=11% Similarity=0.192 Sum_probs=70.0
Q ss_pred cHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (304)
Q Consensus 151 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (304)
.....+.+.+.+...++.+|||||||+|.++..+++.++ +|+|+|+++.+++.+++++.. .++.++.+|+.+
T Consensus 27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~------~~v~~i~~D~~~ 98 (272)
T PRK00274 27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAE------DNLTIIEGDALK 98 (272)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhcc------CceEEEEChhhc
Confidence 344556666666666788999999999999999999986 999999999999999886532 579999999998
Q ss_pred CCCCCCccceEEecc
Q 021975 231 LPFASGFVDAVHAGA 245 (304)
Q Consensus 231 lp~~~~~fD~V~~~~ 245 (304)
+++++-.+|.|+++-
T Consensus 99 ~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 99 VDLSELQPLKVVANL 113 (272)
T ss_pred CCHHHcCcceEEEeC
Confidence 876542257777764
No 166
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.90 E-value=1.4e-08 Score=89.83 Aligned_cols=87 Identities=16% Similarity=0.282 Sum_probs=71.5
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (304)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (304)
....+.+.+.+...++.+|||||||+|.++..+++.+. +++|+|+++.+++.+++++.. ..++.++++|+..+
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D~~~~ 87 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGDALKV 87 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhcc-----CCCEEEEEeccccC
Confidence 44556666666666788999999999999999999865 999999999999999987753 25799999999888
Q ss_pred CCCCCccceEEecchh
Q 021975 232 PFASGFVDAVHAGAAL 247 (304)
Q Consensus 232 p~~~~~fD~V~~~~vl 247 (304)
+++ .||.|+++.-.
T Consensus 88 ~~~--~~d~Vv~NlPy 101 (258)
T PRK14896 88 DLP--EFNKVVSNLPY 101 (258)
T ss_pred Cch--hceEEEEcCCc
Confidence 765 48999887543
No 167
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.89 E-value=6.4e-09 Score=95.41 Aligned_cols=142 Identities=27% Similarity=0.384 Sum_probs=110.8
Q ss_pred HHHHHhHHHhhhcCCCCCcHHHHHHH------HHh-hcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHH
Q 021975 133 FLYERGWRQNFNRSGFPGPDEEFKMA------QEY-FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQ 205 (304)
Q Consensus 133 ~~~~~~w~~~~~~~~~~~~~~~~~~l------~~~-l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~ 205 (304)
..|.+.|-+.++...++......+.. ..+ ....++..++|+|||.|.....+.... ...++|+|.++..+..
T Consensus 70 dl~~~~w~~~~h~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~ 148 (364)
T KOG1269|consen 70 DLYERNWGQSFHFGRIPEGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFR 148 (364)
T ss_pred hhhhhhhccchhccCccchhHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHH
Confidence 45777788877766553332221111 111 112346689999999999999998875 4699999999998888
Q ss_pred HHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 206 CYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 206 a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+........ ......++.+|+...|+++.+||.+.+..+.+|.+++..+++|+.+++||||+++..++..
T Consensus 149 ~~~~~~~~~--l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~ 218 (364)
T KOG1269|consen 149 ANELAKKAY--LDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIK 218 (364)
T ss_pred HHHHHHHHH--hhhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHH
Confidence 877666555 3455666889999999999999999999999999999999999999999999999987766
No 168
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.89 E-value=1.8e-08 Score=95.28 Aligned_cols=113 Identities=13% Similarity=0.245 Sum_probs=80.1
Q ss_pred HHHHHhhccc----CCCeEEEEcCCccHHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc
Q 021975 156 KMAQEYFKSA----QGGLLVDVSCGSGLFSRKFAKSG----TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD 227 (304)
Q Consensus 156 ~~l~~~l~~~----~~~~vLDiGcG~G~~~~~l~~~~----~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d 227 (304)
+.+.+..... ++..|||||||+|-+....++.+ ...+|+++|-++.++...+++++.++ ...+|+++.+|
T Consensus 172 ~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~--w~~~V~vi~~d 249 (448)
T PF05185_consen 172 EALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG--WGDKVTVIHGD 249 (448)
T ss_dssp HHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT--TTTTEEEEES-
T ss_pred HHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC--CCCeEEEEeCc
Confidence 3444444432 35789999999999987766654 24699999999999988888777776 56889999999
Q ss_pred CCCCCCCCCccceEEecc--hhccCCCHHHHHHHHHHhcccCcEEE
Q 021975 228 VCRLPFASGFVDAVHAGA--ALHCWPSPSNAVAEISRILRSGGVFV 271 (304)
Q Consensus 228 ~~~lp~~~~~fD~V~~~~--vl~h~~d~~~~l~~~~r~LkpgG~lv 271 (304)
++++..+. ++|+|++=. .+-.-.-..+.|....|.|||||+++
T Consensus 250 ~r~v~lpe-kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 250 MREVELPE-KVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp TTTSCHSS--EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCCCCC-ceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 99987654 899999832 11111123456888999999999876
No 169
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.88 E-value=1.1e-08 Score=86.83 Aligned_cols=106 Identities=17% Similarity=0.223 Sum_probs=74.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc---cC-------------------------
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT---IL------------------------- 217 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~---~~------------------------- 217 (304)
.+..+|||||..|.++..+++.+....+.|+||++..++.|++.++..-- ..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 46789999999999999999997667899999999999999998753210 00
Q ss_pred -----------CCCeEEEEccCCCCCCCCCccceEEecch--hccCC----CHHHHHHHHHHhcccCcEEEEE
Q 021975 218 -----------TSNLALVRADVCRLPFASGFVDAVHAGAA--LHCWP----SPSNAVAEISRILRSGGVFVGT 273 (304)
Q Consensus 218 -----------~~~i~~~~~d~~~lp~~~~~fD~V~~~~v--l~h~~----d~~~~l~~~~r~LkpgG~lvi~ 273 (304)
..+..+...|+. .+....||+|+|.-+ .-|+. -...+++.+.++|.|||+|++-
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 001111122222 123567999998543 22322 2358999999999999988874
No 170
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.88 E-value=2.1e-09 Score=100.31 Aligned_cols=115 Identities=24% Similarity=0.343 Sum_probs=81.6
Q ss_pred HHHHHHHHHhhcc----cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEE---eCCHHHHHHHHHHHHhcCccCCCCeEEE
Q 021975 152 DEEFKMAQEYFKS----AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVAL---DFSENMLRQCYDFIKQDNTILTSNLALV 224 (304)
Q Consensus 152 ~~~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gi---D~s~~~~~~a~~~~~~~~~~~~~~i~~~ 224 (304)
.+.++.|.+.+.. ..-.++||+|||.|.|+.+|.+++- .+..+ |..+..++.|.++ ++..+
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V--~t~s~a~~d~~~~qvqfaleR----------Gvpa~ 166 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV--TTMSFAPNDEHEAQVQFALER----------GVPAM 166 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc--eEEEcccccCCchhhhhhhhc----------Ccchh
Confidence 4455566666544 2334699999999999999999863 33333 4445566666652 23333
Q ss_pred Ecc--CCCCCCCCCccceEEecchhccCC-CHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975 225 RAD--VCRLPFASGFVDAVHAGAALHCWP-SPSNAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 225 ~~d--~~~lp~~~~~fD~V~~~~vl~h~~-d~~~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
.+- ...+||++++||+|.|...+..+. +-..+|-++.|+|+|||+++++.+-.+
T Consensus 167 ~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 167 IGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred hhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 222 478999999999999998876654 335689999999999999999876543
No 171
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.86 E-value=1.9e-08 Score=90.24 Aligned_cols=87 Identities=16% Similarity=0.272 Sum_probs=71.5
Q ss_pred HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (304)
Q Consensus 153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (304)
...+.+.+.....++.+|||||||+|.++..+.+.+. +++++|+++.+++.+++++...+ ...++.++.+|+...+
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~--~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSP--LASKLEVIEGDALKTE 98 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcC--CCCcEEEEECCHhhhc
Confidence 4455666666666788999999999999999998875 89999999999999999887654 2468999999998766
Q ss_pred CCCCccceEEecc
Q 021975 233 FASGFVDAVHAGA 245 (304)
Q Consensus 233 ~~~~~fD~V~~~~ 245 (304)
+ ..||.|+++.
T Consensus 99 ~--~~~d~VvaNl 109 (294)
T PTZ00338 99 F--PYFDVCVANV 109 (294)
T ss_pred c--cccCEEEecC
Confidence 4 3689888753
No 172
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.86 E-value=5e-08 Score=86.01 Aligned_cols=85 Identities=12% Similarity=0.230 Sum_probs=68.5
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (304)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (304)
....+.+.+.+...++.+|||||||+|.++..+++.++ .++++|+++.+++.+++++.. ..++.++.+|+...
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDALKV 87 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchhcC
Confidence 44555666666666788999999999999999999986 899999999999999987643 25799999999988
Q ss_pred CCCCCccc---eEEecc
Q 021975 232 PFASGFVD---AVHAGA 245 (304)
Q Consensus 232 p~~~~~fD---~V~~~~ 245 (304)
+++ .+| +|+++-
T Consensus 88 ~~~--~~d~~~~vvsNl 102 (253)
T TIGR00755 88 DLP--DFPKQLKVVSNL 102 (253)
T ss_pred Chh--HcCCcceEEEcC
Confidence 765 466 565543
No 173
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.85 E-value=1.7e-08 Score=89.93 Aligned_cols=123 Identities=13% Similarity=0.163 Sum_probs=85.3
Q ss_pred HHHHHHHHHhhcc-cCCCeEEEEcCCccHHHHHH----HHhC----CCCeEEEEeCCHHHHHHHHHHHHh----------
Q 021975 152 DEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKF----AKSG----TYSGVVALDFSENMLRQCYDFIKQ---------- 212 (304)
Q Consensus 152 ~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l----~~~~----~~~~v~giD~s~~~~~~a~~~~~~---------- 212 (304)
...++.+.+.+.. ...-+|+..||++|.=...+ .+.. ...+++|+|+|+.+++.|++-.-.
T Consensus 100 ~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~ 179 (287)
T PRK10611 100 AHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQ 179 (287)
T ss_pred cHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHH
Confidence 3344444443322 22368999999999633222 2321 135899999999999999885200
Q ss_pred --------c-----C-----ccCCCCeEEEEccCCCCCCC-CCccceEEecchhccCCC--HHHHHHHHHHhcccCcEEE
Q 021975 213 --------D-----N-----TILTSNLALVRADVCRLPFA-SGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFV 271 (304)
Q Consensus 213 --------~-----~-----~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~lv 271 (304)
. + ...-..|.|.+.|+.+.+++ .+.||+|+|.+|+.|+.. ...+++.+.+.|+|||+|+
T Consensus 180 ~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~ 259 (287)
T PRK10611 180 QLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLF 259 (287)
T ss_pred HHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 0 0 00124578999999875443 578999999999999965 4589999999999999887
Q ss_pred EEE
Q 021975 272 GTT 274 (304)
Q Consensus 272 i~~ 274 (304)
+..
T Consensus 260 lG~ 262 (287)
T PRK10611 260 AGH 262 (287)
T ss_pred EeC
Confidence 755
No 174
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.84 E-value=2.4e-08 Score=92.82 Aligned_cols=100 Identities=17% Similarity=0.188 Sum_probs=81.4
Q ss_pred CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecch
Q 021975 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 246 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 246 (304)
+.+|||++||+|.++..++......+|+++|+++.+++.++++++.++. .++.++++|+..+....+.||+|++.--
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~---~~~~v~~~Da~~~l~~~~~fD~V~lDP~ 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL---ENEKVFNKDANALLHEERKFDVVDIDPF 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CceEEEhhhHHHHHhhcCCCCEEEECCC
Confidence 4689999999999999998765445899999999999999999988873 4677899998664221457999998531
Q ss_pred hccCCCHHHHHHHHHHhcccCcEEEEE
Q 021975 247 LHCWPSPSNAVAEISRILRSGGVFVGT 273 (304)
Q Consensus 247 l~h~~d~~~~l~~~~r~LkpgG~lvi~ 273 (304)
..+..++....+.+++||+++++
T Consensus 135 ----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 ----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 45567888888889999999998
No 175
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.83 E-value=7.2e-08 Score=83.36 Aligned_cols=126 Identities=16% Similarity=0.204 Sum_probs=92.6
Q ss_pred CcHHHHHHHHHhhccc---CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc
Q 021975 150 GPDEEFKMAQEYFKSA---QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226 (304)
Q Consensus 150 ~~~~~~~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~ 226 (304)
..++..+++.+.+... .+..|||+|||+|..+..+....+...++++|.|+.++..|.++.+..+ ...++.++..
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~--l~g~i~v~~~ 206 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK--LSGRIEVIHN 206 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh--hcCceEEEec
Confidence 3455566666666532 3447999999999999999998878999999999999999999999888 5677777754
Q ss_pred cCCC-----CCCCCCccceEEecchhccCCC------------H--------------HHHHHHHHHhcccCcEEEEEEe
Q 021975 227 DVCR-----LPFASGFVDAVHAGAALHCWPS------------P--------------SNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 227 d~~~-----lp~~~~~fD~V~~~~vl~h~~d------------~--------------~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
+.+. .+...+++|+++++--.---.| | ..++.-+.|.|+|||.+.+...
T Consensus 207 ~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 207 IMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 4322 3455789999999632111011 1 1245667899999999999887
Q ss_pred CC
Q 021975 276 LR 277 (304)
Q Consensus 276 ~~ 277 (304)
.+
T Consensus 287 ~~ 288 (328)
T KOG2904|consen 287 ER 288 (328)
T ss_pred cc
Confidence 44
No 176
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.82 E-value=1.6e-07 Score=82.35 Aligned_cols=108 Identities=13% Similarity=0.185 Sum_probs=90.0
Q ss_pred cCCCeEEEEcCCccHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---CCCCccc
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVD 239 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD 239 (304)
....+||||.||.|.+........+. .++.-.|.++..++..++.+++.++ ..-++|.++|+.+.. --+-..+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL--~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL--EDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC--ccceEEEecCCCCHhHhhccCCCCC
Confidence 45678999999999998888877654 6899999999999999999999983 455599999997632 1133579
Q ss_pred eEEecchhccCCCHH---HHHHHHHHhcccCcEEEEEE
Q 021975 240 AVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 240 ~V~~~~vl~h~~d~~---~~l~~~~r~LkpgG~lvi~~ 274 (304)
+++.+..+|.++|-. ..++.+.+.+.|||+++.+.
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 999999999999854 56899999999999988766
No 177
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.80 E-value=1.9e-08 Score=84.82 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCccHHHHH----HHH---h--CCCCeEEEEeCCHHHHHHHHHHHHh-------------------cC---
Q 021975 166 QGGLLVDVSCGSGLFSRK----FAK---S--GTYSGVVALDFSENMLRQCYDFIKQ-------------------DN--- 214 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~----l~~---~--~~~~~v~giD~s~~~~~~a~~~~~~-------------------~~--- 214 (304)
+.-+|+.+||++|.=... +.+ . ....+++|+|+|+.+++.|++-.=. .+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 456899999999963322 223 1 1145999999999999999874300 00
Q ss_pred ---ccCCCCeEEEEccCCCCCCCCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEE
Q 021975 215 ---TILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 215 ---~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~ 274 (304)
...-..+.|.+.|+.+.+...+.||+|+|.+||-++... ..+++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 001245899999998844456789999999999999765 479999999999999999865
No 178
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=4.7e-08 Score=81.35 Aligned_cols=113 Identities=27% Similarity=0.346 Sum_probs=86.0
Q ss_pred HHHHhhc--ccCCCeEEEEcCCccHHHHHHHHh-C-CCCeEEEEeCCHHHHHHHHHHHHhcCc-------cCCCCeEEEE
Q 021975 157 MAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKS-G-TYSGVVALDFSENMLRQCYDFIKQDNT-------ILTSNLALVR 225 (304)
Q Consensus 157 ~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~~v~giD~s~~~~~~a~~~~~~~~~-------~~~~~i~~~~ 225 (304)
.+.++|. ..++..+||+|.|+|+++..++.. + ++..++|||.-++.++++++++...-. ....++.++.
T Consensus 71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 3344444 456999999999999999888854 3 334569999999999999999876431 0235678999
Q ss_pred ccCCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 226 ~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
+|....--+...||.|++... .....+++...|++||.+++-.-
T Consensus 151 GDgr~g~~e~a~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVGAA------ASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred CCccccCCccCCcceEEEccC------ccccHHHHHHhhccCCeEEEeec
Confidence 999887767889999999853 34456778888999999988654
No 179
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.80 E-value=7.5e-09 Score=90.07 Aligned_cols=99 Identities=26% Similarity=0.400 Sum_probs=83.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCe-EEEEccCCCCCCCCCccceEEec
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL-ALVRADVCRLPFASGFVDAVHAG 244 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i-~~~~~d~~~lp~~~~~fD~V~~~ 244 (304)
.+..++|+|||.|.++.. .|..-++|.|.+...+..+++ .+. ....+|+..+|+++.+||.+++.
T Consensus 45 ~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~----------~~~~~~~~ad~l~~p~~~~s~d~~lsi 110 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKR----------SGGDNVCRADALKLPFREESFDAALSI 110 (293)
T ss_pred CcceeeecccCCcccCcC----CCcceeeecchhhhhcccccc----------CCCceeehhhhhcCCCCCCccccchhh
Confidence 367899999999976632 255689999999999988877 333 68889999999999999999999
Q ss_pred chhccCCCH---HHHHHHHHHhcccCcEEEEEEeCCC
Q 021975 245 AALHCWPSP---SNAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 245 ~vl~h~~d~---~~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
.|+||+... ..+++++.+.|+|||...+..+...
T Consensus 111 avihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 111 AVIHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 999999754 4789999999999999888877653
No 180
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.79 E-value=2.9e-08 Score=83.90 Aligned_cols=100 Identities=21% Similarity=0.334 Sum_probs=75.5
Q ss_pred cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (304)
.++.+|+|+.||.|.++..+++.+....|+++|++|.+++..+++++.++ ....+..+.+|...+.. .+.||-|++.
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk--v~~~i~~~~~D~~~~~~-~~~~drvim~ 176 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK--VENRIEVINGDAREFLP-EGKFDRVIMN 176 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT---TTTEEEEES-GGG----TT-EEEEEE-
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC--CCCeEEEEcCCHHHhcC-ccccCEEEEC
Confidence 34789999999999999999996555699999999999999999999998 56779999999988754 7899999986
Q ss_pred chhccCCCHHHHHHHHHHhcccCcEEE
Q 021975 245 AALHCWPSPSNAVAEISRILRSGGVFV 271 (304)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~LkpgG~lv 271 (304)
.. ..-..+|..+.+++|+||++-
T Consensus 177 lp----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 177 LP----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred Ch----HHHHHHHHHHHHHhcCCcEEE
Confidence 42 123467899999999999763
No 181
>PRK04148 hypothetical protein; Provisional
Probab=98.77 E-value=1.7e-07 Score=73.61 Aligned_cols=107 Identities=11% Similarity=0.146 Sum_probs=75.4
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCccH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975 154 EFKMAQEYFKSAQGGLLVDVSCGSGL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (304)
Q Consensus 154 ~~~~l~~~l~~~~~~~vLDiGcG~G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (304)
+.+.+.+.+...++.++||||||+|. ++..|++.|. +|+++|+++..++.+++ ..+.++.+|+.+..
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~----------~~~~~v~dDlf~p~ 71 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKK----------LGLNAFVDDLFNPN 71 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHH----------hCCeEEECcCCCCC
Confidence 34556666655567899999999996 8888888887 99999999999998877 35789999998754
Q ss_pred CC-CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 233 FA-SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 233 ~~-~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+. -+.+|+|.+... -++....+.++.+.+ |.-+++.....
T Consensus 72 ~~~y~~a~liysirp---p~el~~~~~~la~~~--~~~~~i~~l~~ 112 (134)
T PRK04148 72 LEIYKNAKLIYSIRP---PRDLQPFILELAKKI--NVPLIIKPLSG 112 (134)
T ss_pred HHHHhcCCEEEEeCC---CHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 32 346899988642 112233444444433 44577766654
No 182
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.77 E-value=1.5e-07 Score=79.30 Aligned_cols=122 Identities=14% Similarity=0.103 Sum_probs=83.6
Q ss_pred cHHHHHHHHHhhc-ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC
Q 021975 151 PDEEFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229 (304)
Q Consensus 151 ~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~ 229 (304)
.+...+.+...+. ..++.++||++||+|.++..++.++. ..|+++|.++.+++.++++++..+ ...++.++.+|+.
T Consensus 33 ~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~--~~~~~~~~~~D~~ 109 (189)
T TIGR00095 33 TRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLK--SGEQAEVVRNSAL 109 (189)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhC--CcccEEEEehhHH
Confidence 3333344444332 23578999999999999999999974 589999999999999999998887 3457899999994
Q ss_pred CC-C-C-CCC-ccceEEecchhccCCCHHHHHHHHHH--hcccCcEEEEEEeC
Q 021975 230 RL-P-F-ASG-FVDAVHAGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTFL 276 (304)
Q Consensus 230 ~l-p-~-~~~-~fD~V~~~~vl~h~~d~~~~l~~~~r--~LkpgG~lvi~~~~ 276 (304)
.. . + ... .||+|+..--... .....+++.+.. +|+++|++++....
T Consensus 110 ~~l~~~~~~~~~~dvv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 110 RALKFLAKKPTFDNVIYLDPPFFN-GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred HHHHHhhccCCCceEEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 42 2 1 122 4788887533321 223444554443 68888877766544
No 183
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=1.3e-07 Score=77.11 Aligned_cols=112 Identities=19% Similarity=0.276 Sum_probs=85.2
Q ss_pred hcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccce
Q 021975 162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 240 (304)
Q Consensus 162 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 240 (304)
+.......+||||||+|..+..|++. +++..+.++|+++.+++...+..+.++ .++..+++|+..- +..++.|+
T Consensus 39 L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~----~~~~~V~tdl~~~-l~~~~VDv 113 (209)
T KOG3191|consen 39 LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR----VHIDVVRTDLLSG-LRNESVDV 113 (209)
T ss_pred HhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC----CccceeehhHHhh-hccCCccE
Confidence 33334678999999999999999887 677889999999999999888887776 6789999998763 33589999
Q ss_pred EEecchhccCC---C------------------HHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975 241 VHAGAALHCWP---S------------------PSNAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 241 V~~~~vl~h~~---d------------------~~~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
++.+--..-.+ . .++++..+-.+|.|.|++++....+.
T Consensus 114 LvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 114 LVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN 172 (209)
T ss_pred EEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence 99863221110 0 12456677788899999999887663
No 184
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.73 E-value=2.3e-07 Score=77.48 Aligned_cols=98 Identities=15% Similarity=0.198 Sum_probs=83.8
Q ss_pred eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhc
Q 021975 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 248 (304)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~ 248 (304)
+++|||+|.|.-+.-++-..|+.+++.+|....-+...+......++ .++.++++.+++ +....+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L---~nv~v~~~R~E~-~~~~~~fd~v~aRAv-- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL---SNVEVINGRAEE-PEYRESFDVVTARAV-- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT----SSEEEEES-HHH-TTTTT-EEEEEEESS--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC---CCEEEEEeeecc-cccCCCccEEEeehh--
Confidence 89999999999999999988888999999999999999998888874 689999999988 445789999999875
Q ss_pred cCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 249 CWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 249 h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
.....+++-+...|++||.+++.-
T Consensus 125 --~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 --APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp --SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred --cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 557788899999999999988876
No 185
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.71 E-value=8.4e-08 Score=88.72 Aligned_cols=114 Identities=19% Similarity=0.173 Sum_probs=90.2
Q ss_pred CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----CCCCccceEE
Q 021975 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDAVH 242 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~V~ 242 (304)
+++|||+=|=||.++.+.+..| -.+|+++|.|...++.|+++++.+++ ...++.|+++|+...- -...+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~-~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGL-DGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCC-CccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 8899999999999999999887 36999999999999999999999985 3466899999996531 2345899999
Q ss_pred ecc---------hhccCCCHHHHHHHHHHhcccCcEEEEEEeCCCCCCc
Q 021975 243 AGA---------ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST 282 (304)
Q Consensus 243 ~~~---------vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~~~~~ 282 (304)
+.- ...-..+-..++..+.++|+|||++++++..+.-+..
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~ 344 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSD 344 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHH
Confidence 831 1111123346789999999999999999987754333
No 186
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.68 E-value=9.1e-08 Score=88.30 Aligned_cols=113 Identities=15% Similarity=0.159 Sum_probs=77.9
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (304)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (304)
+.+.+.+.+++... +.+|||++||+|.++..+++... +|+|+|+++.+++.|+++++.++. .++.++.+|+.++
T Consensus 184 ~~l~~~v~~~~~~~-~~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~---~~v~~~~~d~~~~ 257 (353)
T TIGR02143 184 IKMLEWACEVTQGS-KGDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNI---DNVQIIRMSAEEF 257 (353)
T ss_pred HHHHHHHHHHhhcC-CCcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCC---CcEEEEEcCHHHH
Confidence 34445555555432 24799999999999999998865 999999999999999999998873 5799999998663
Q ss_pred CC-----------C-----CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 232 PF-----------A-----SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 232 p~-----------~-----~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
.- . ...||+|+..-- ...-...+++.+. +|+++++++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 258 TQAMNGVREFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred HHHHhhccccccccccccccCCCCEEEECCC--CCCCcHHHHHHHH---cCCcEEEEEcC
Confidence 21 0 113799888321 0001123444443 47888887664
No 187
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.68 E-value=1.3e-07 Score=84.99 Aligned_cols=99 Identities=16% Similarity=0.251 Sum_probs=83.9
Q ss_pred CeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchh
Q 021975 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 247 (304)
Q Consensus 168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl 247 (304)
...+|+|.|.|..+..+...++ .+-|++++...+-.++..+. ++|..+-+|..+- .|. -|+|++.++|
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~-~P~--~daI~mkWiL 246 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQD-TPK--GDAIWMKWIL 246 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-------CCcceeccccccc-CCC--cCeEEEEeec
Confidence 6899999999999999999888 89999999988877777543 4588888888664 444 3699999999
Q ss_pred ccCCCHH--HHHHHHHHhcccCcEEEEEEeCCC
Q 021975 248 HCWPSPS--NAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 248 ~h~~d~~--~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
||+.|.+ ++|+++...|+|||.+++.+...+
T Consensus 247 hdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 247 HDWTDEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 9999775 899999999999999999998553
No 188
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=4.1e-08 Score=76.94 Aligned_cols=85 Identities=19% Similarity=0.363 Sum_probs=70.0
Q ss_pred HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCC
Q 021975 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (304)
Q Consensus 157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 236 (304)
.+.+.....++++++|+|||.|-+........ ...|+|+|+++++++.++++.+... .++.++++|+.++.+..+
T Consensus 39 ~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~-~e~vlGfDIdpeALEIf~rNaeEfE----vqidlLqcdildle~~~g 113 (185)
T KOG3420|consen 39 TIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPK-NESVLGFDIDPEALEIFTRNAEEFE----VQIDLLQCDILDLELKGG 113 (185)
T ss_pred HHHhhhccccCcchhhhcCchhhhHHHhhcCC-CceEEeeecCHHHHHHHhhchHHhh----hhhheeeeeccchhccCC
Confidence 33444455678999999999999996666554 4589999999999999999988865 677999999999888889
Q ss_pred ccceEEecch
Q 021975 237 FVDAVHAGAA 246 (304)
Q Consensus 237 ~fD~V~~~~v 246 (304)
.||.++.+--
T Consensus 114 ~fDtaviNpp 123 (185)
T KOG3420|consen 114 IFDTAVINPP 123 (185)
T ss_pred eEeeEEecCC
Confidence 9999998643
No 189
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.67 E-value=2.5e-07 Score=79.87 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=61.8
Q ss_pred cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeE-EEEccCCCC-----CCCCCcc
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA-LVRADVCRL-----PFASGFV 238 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~-~~~~d~~~l-----p~~~~~f 238 (304)
.++.++||+|||+|.++..+++.+ ..+|+|+|+++.++....+ . ..++. +...++..+ +..-..+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~---~-----~~~v~~~~~~ni~~~~~~~~~~d~~~~ 144 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLR---Q-----DERVKVLERTNIRYVTPADIFPDFATF 144 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHh---c-----CCCeeEeecCCcccCCHhHcCCCceee
Confidence 467799999999999999999986 3589999999988776222 1 12322 223333322 2122367
Q ss_pred ceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
|+++++..+ .+..+.+.|++ |.+++..
T Consensus 145 DvsfiS~~~--------~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 145 DVSFISLIS--------ILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred eEEEeehHh--------HHHHHHHHhCc-CeEEEEc
Confidence 777776532 48889999999 7655433
No 190
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=7.1e-07 Score=77.19 Aligned_cols=114 Identities=21% Similarity=0.400 Sum_probs=96.7
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (304)
Q Consensus 154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (304)
.+.++..++...++.+|+|-|.|+|.++.++++. +|.+.++-+|+.+...+.|++-++.++ ...+++++..|+...-
T Consensus 93 Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg--i~~~vt~~hrDVc~~G 170 (314)
T KOG2915|consen 93 DIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG--IGDNVTVTHRDVCGSG 170 (314)
T ss_pred cHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC--CCcceEEEEeecccCC
Confidence 3457888888899999999999999999999998 777899999999999999999999999 7899999999997754
Q ss_pred CC--CCccceEEecchhccCCCHHHHHHHHHHhcccCcE-EEEEE
Q 021975 233 FA--SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGV-FVGTT 274 (304)
Q Consensus 233 ~~--~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~-lvi~~ 274 (304)
|. +..+|.|+.. ++.|..++-.+..+||.+|. |.-.+
T Consensus 171 F~~ks~~aDaVFLD-----lPaPw~AiPha~~~lk~~g~r~csFS 210 (314)
T KOG2915|consen 171 FLIKSLKADAVFLD-----LPAPWEAIPHAAKILKDEGGRLCSFS 210 (314)
T ss_pred ccccccccceEEEc-----CCChhhhhhhhHHHhhhcCceEEecc
Confidence 33 5678888874 58899889999999998874 44333
No 191
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.67 E-value=1e-07 Score=88.35 Aligned_cols=113 Identities=14% Similarity=0.185 Sum_probs=78.6
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (304)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (304)
+.+.+.+.+++... +.++||++||+|.++..+++... +|+|+|.++.+++.++++++.++. .++.++.+|+.+.
T Consensus 193 e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~---~~v~~~~~d~~~~ 266 (362)
T PRK05031 193 EKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGI---DNVQIIRMSAEEF 266 (362)
T ss_pred HHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCC---CcEEEEECCHHHH
Confidence 34555555555432 35799999999999999988765 999999999999999999988873 5899999998652
Q ss_pred -C-CC--------------CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 232 -P-FA--------------SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 232 -p-~~--------------~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
+ +. ...||+|+..--= ..-...+++.+. +|+++++++..
T Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR--~G~~~~~l~~l~---~~~~ivyvSC~ 321 (362)
T PRK05031 267 TQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR--AGLDDETLKLVQ---AYERILYISCN 321 (362)
T ss_pred HHHHhhcccccccccccccCCCCCEEEECCCC--CCCcHHHHHHHH---ccCCEEEEEeC
Confidence 1 10 1258999984210 001123444443 46777777664
No 192
>PLN02823 spermine synthase
Probab=98.67 E-value=1.7e-07 Score=85.48 Aligned_cols=107 Identities=17% Similarity=0.212 Sum_probs=80.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-ccCCCCeEEEEccCCCC-CCCCCccceEEe
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL-PFASGFVDAVHA 243 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~ 243 (304)
...+||.||+|.|..+..+.+..+..+++.+|+++.+++.|++.+.... ....++++++.+|.... ....++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4568999999999999998887555689999999999999999875421 01247899999998653 333578999998
Q ss_pred cchhccCC-C------HHHHHH-HHHHhcccCcEEEEE
Q 021975 244 GAALHCWP-S------PSNAVA-EISRILRSGGVFVGT 273 (304)
Q Consensus 244 ~~vl~h~~-d------~~~~l~-~~~r~LkpgG~lvi~ 273 (304)
... .... . -.++++ .+.+.|+|||++++.
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 632 1110 1 135777 899999999998764
No 193
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.66 E-value=2.2e-07 Score=88.42 Aligned_cols=112 Identities=18% Similarity=0.177 Sum_probs=87.8
Q ss_pred cccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-CCCCccce
Q 021975 163 KSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDA 240 (304)
Q Consensus 163 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~ 240 (304)
...++.+|||+++|.|.-+.+++... ..+.+++.|+++..++..+++++..| ..++.+...|...+. ...+.||.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G---~~nv~v~~~D~~~~~~~~~~~fD~ 186 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG---VSNVALTHFDGRVFGAALPETFDA 186 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEeCchhhhhhhchhhcCe
Confidence 55678999999999999999998874 24589999999999999999999987 367888888887653 22457999
Q ss_pred EEe----c--chhccCCCH----------------HHHHHHHHHhcccCcEEEEEEeCC
Q 021975 241 VHA----G--AALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 241 V~~----~--~vl~h~~d~----------------~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
|+. + +++..-++. .++|..+.+.|||||+|+-+|..-
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 995 2 233332211 357899999999999999888764
No 194
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.64 E-value=2e-07 Score=84.63 Aligned_cols=131 Identities=13% Similarity=0.126 Sum_probs=90.1
Q ss_pred CCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHHHhcCccCC
Q 021975 146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-------GTYSGVVALDFSENMLRQCYDFIKQDNTILT 218 (304)
Q Consensus 146 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-------~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~ 218 (304)
+.|.+|..+.+++.+.+...++.+|+|.+||+|.++..+.+. ....+++|+|+++.++..++-++..++. ..
T Consensus 26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~-~~ 104 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI-DN 104 (311)
T ss_dssp GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH-HC
T ss_pred ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc-cc
Confidence 357889999999999998877888999999999999888763 2456999999999999999887765542 12
Q ss_pred CCeEEEEccCCCCCCC--CCccceEEecchhccC--------CC-------------HHHHHHHHHHhcccCcEEEEEEe
Q 021975 219 SNLALVRADVCRLPFA--SGFVDAVHAGAALHCW--------PS-------------PSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 219 ~~i~~~~~d~~~lp~~--~~~fD~V~~~~vl~h~--------~d-------------~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
....+..+|....+.. ...||+|+++--+.-. .+ ...++..+.+.||+||++.+..+
T Consensus 105 ~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 105 SNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp BGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 3346888887654432 4789999996322111 01 12578999999999999888887
Q ss_pred CC
Q 021975 276 LR 277 (304)
Q Consensus 276 ~~ 277 (304)
..
T Consensus 185 ~~ 186 (311)
T PF02384_consen 185 NG 186 (311)
T ss_dssp HH
T ss_pred ch
Confidence 54
No 195
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.64 E-value=3e-07 Score=81.72 Aligned_cols=104 Identities=12% Similarity=0.167 Sum_probs=83.8
Q ss_pred CeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccC-CCCeEEEEccCCCCC-CCCCccceEEecc
Q 021975 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL-TSNLALVRADVCRLP-FASGFVDAVHAGA 245 (304)
Q Consensus 168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~-~~~i~~~~~d~~~lp-~~~~~fD~V~~~~ 245 (304)
++||-||.|.|..++.+.+..+..+++.+|+++..++.+++.+....... .+++.++..|..+.- -...+||+|++..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 69999999999999999999877899999999999999999886643111 478999999986532 1233899999864
Q ss_pred hhccCCCH------HHHHHHHHHhcccCcEEEEE
Q 021975 246 ALHCWPSP------SNAVAEISRILRSGGVFVGT 273 (304)
Q Consensus 246 vl~h~~d~------~~~l~~~~r~LkpgG~lvi~ 273 (304)
.=. . .| ..+++.+++.|+++|+++..
T Consensus 158 tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 TDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 311 1 12 57899999999999999987
No 196
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.62 E-value=3.3e-07 Score=82.92 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-CccCCCCeEEEE-ccCCCCC----CCCCccc
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVR-ADVCRLP----FASGFVD 239 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~i~~~~-~d~~~lp----~~~~~fD 239 (304)
+..++||||||+|.....++...+..+++|+|+++.+++.|+++++.+ + ...++.+.. .+...+. .+.+.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~--l~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPG--LNGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccC--CcCcEEEEEccchhhhhhcccccCCceE
Confidence 467899999999988777776655679999999999999999999988 5 346777754 3332221 2356899
Q ss_pred eEEecchhc
Q 021975 240 AVHAGAALH 248 (304)
Q Consensus 240 ~V~~~~vl~ 248 (304)
+|+|+--++
T Consensus 192 livcNPPf~ 200 (321)
T PRK11727 192 ATLCNPPFH 200 (321)
T ss_pred EEEeCCCCc
Confidence 999975544
No 197
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.61 E-value=3e-07 Score=81.58 Aligned_cols=101 Identities=20% Similarity=0.290 Sum_probs=78.6
Q ss_pred cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (304)
-.++.|||+|||+|-++...+..| ..+|+++|.| +|.++|++.++.++ ...+|.++.+-++++.+| ++.|+|++-
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS-~MAqyA~~Lv~~N~--~~~rItVI~GKiEdieLP-Ek~DviISE 250 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEAS-EMAQYARKLVASNN--LADRITVIPGKIEDIELP-EKVDVIISE 250 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhC-cceEEEEehh-HHHHHHHHHHhcCC--ccceEEEccCccccccCc-hhccEEEec
Confidence 357899999999999999888887 4699999965 59999999999887 679999999999998876 578999983
Q ss_pred c---hhccCCCHHHHHHHHHHhcccCcEEE
Q 021975 245 A---ALHCWPSPSNAVAEISRILRSGGVFV 271 (304)
Q Consensus 245 ~---vl~h~~d~~~~l~~~~r~LkpgG~lv 271 (304)
- .|-.-.-.+. .-..++.|||.|..+
T Consensus 251 PMG~mL~NERMLEs-Yl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 251 PMGYMLVNERMLES-YLHARKWLKPNGKMF 279 (517)
T ss_pred cchhhhhhHHHHHH-HHHHHhhcCCCCccc
Confidence 2 2221111122 234569999999865
No 198
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.61 E-value=1e-07 Score=84.76 Aligned_cols=111 Identities=17% Similarity=0.211 Sum_probs=80.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-C--CCCCccceEE
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P--FASGFVDAVH 242 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p--~~~~~fD~V~ 242 (304)
++++|||+=|=+|.++.+.+..| ..+|+.+|.|..+++.++++++.+++ ...++.+++.|+.+. . -..++||+|+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~-~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGL-DLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT--CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCC-CccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 47899999999999999888776 35899999999999999999999884 236799999998652 1 1246899999
Q ss_pred ecc---h---hccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975 243 AGA---A---LHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 243 ~~~---v---l~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
+.- . ..-..+...++..+.++|+|||.|++++....
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~ 242 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH 242 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 831 1 00011334678899999999999988887653
No 199
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.60 E-value=1.8e-07 Score=78.18 Aligned_cols=126 Identities=13% Similarity=0.190 Sum_probs=89.8
Q ss_pred CCcHHHHHHHHHhhcc--cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc
Q 021975 149 PGPDEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226 (304)
Q Consensus 149 ~~~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~ 226 (304)
|+.+...+.+-+.+.. .++.++||+-||+|.++.....+|. .+|+.+|.++..++..+++++..+ ...++.++..
T Consensus 23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~--~~~~~~v~~~ 99 (183)
T PF03602_consen 23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLG--LEDKIRVIKG 99 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT---GGGEEEEES
T ss_pred CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhC--CCcceeeecc
Confidence 5555666666666654 4789999999999999999998883 599999999999999999999887 3456899998
Q ss_pred cCCC-CC---CCCCccceEEecchhccCCCHHHHHHHHH--HhcccCcEEEEEEeCC
Q 021975 227 DVCR-LP---FASGFVDAVHAGAALHCWPSPSNAVAEIS--RILRSGGVFVGTTFLR 277 (304)
Q Consensus 227 d~~~-lp---~~~~~fD~V~~~~vl~h~~d~~~~l~~~~--r~LkpgG~lvi~~~~~ 277 (304)
|... ++ -....||+|++.--...-.....+++.+. .+|+++|++++-....
T Consensus 100 d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 100 DAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp SHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 8643 21 14678999999643322111256777776 7899999888877665
No 200
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.58 E-value=9.6e-07 Score=70.00 Aligned_cols=104 Identities=29% Similarity=0.429 Sum_probs=75.8
Q ss_pred EEEEcCCccHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC--CCCCC-CccceEEecc
Q 021975 170 LVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPFAS-GFVDAVHAGA 245 (304)
Q Consensus 170 vLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~--lp~~~-~~fD~V~~~~ 245 (304)
++|+|||+|... .+...... ..++|+|+++.++..++..... . ....+.+...+... +++.. ..||++ ...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A--GLGLVDFVVADALGGVLPFEDSASFDLV-ISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c--CCCceEEEEeccccCCCCCCCCCceeEE-eee
Confidence 999999999966 33333222 3899999999999986554432 2 01116788888776 77776 489999 554
Q ss_pred hhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975 246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 246 vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
...|..++...+.++.+.|+|+|.+++......
T Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 127 LVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 444444488899999999999999999887754
No 201
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.57 E-value=2.6e-07 Score=77.86 Aligned_cols=89 Identities=19% Similarity=0.262 Sum_probs=71.1
Q ss_pred CeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC---CCccceEEec
Q 021975 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAVHAG 244 (304)
Q Consensus 168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~V~~~ 244 (304)
.++|||||=+......- .+ .-.|+.||+++ ..-.+.+.|+.+.|++ ++.||+|+++
T Consensus 53 lrlLEVGals~~N~~s~--~~-~fdvt~IDLns------------------~~~~I~qqDFm~rplp~~~~e~FdvIs~S 111 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST--SG-WFDVTRIDLNS------------------QHPGILQQDFMERPLPKNESEKFDVISLS 111 (219)
T ss_pred ceEEeecccCCCCcccc--cC-ceeeEEeecCC------------------CCCCceeeccccCCCCCCcccceeEEEEE
Confidence 58999999865544332 22 23699999976 3345678899887764 6799999999
Q ss_pred chhccCCCHH---HHHHHHHHhcccCcE-----EEEEEeCC
Q 021975 245 AALHCWPSPS---NAVAEISRILRSGGV-----FVGTTFLR 277 (304)
Q Consensus 245 ~vl~h~~d~~---~~l~~~~r~LkpgG~-----lvi~~~~~ 277 (304)
.||+++|+|. +.+..+.+.|+|+|. |+++.+..
T Consensus 112 LVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~ 152 (219)
T PF11968_consen 112 LVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP 152 (219)
T ss_pred EEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence 9999999997 689999999999999 99988765
No 202
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.57 E-value=6.1e-07 Score=79.06 Aligned_cols=109 Identities=14% Similarity=0.144 Sum_probs=80.5
Q ss_pred CCeEEEEcCCccH--HH--HHHHHhCC-----CCeEEEEeCCHHHHHHHHHHHHh-----cC------------------
Q 021975 167 GGLLVDVSCGSGL--FS--RKFAKSGT-----YSGVVALDFSENMLRQCYDFIKQ-----DN------------------ 214 (304)
Q Consensus 167 ~~~vLDiGcG~G~--~~--~~l~~~~~-----~~~v~giD~s~~~~~~a~~~~~~-----~~------------------ 214 (304)
.-+|+-+||++|. ++ ..+.+.++ ..+++|+|+|..+++.|+.-.=. .+
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5689999999996 22 33333332 57999999999999999763311 11
Q ss_pred ---ccCCCCeEEEEccCCCCCCCCCccceEEecchhccCCCHH--HHHHHHHHhcccCcEEEEEEe
Q 021975 215 ---TILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 215 ---~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~ 275 (304)
...-..|.|...|+...+...+.||+|+|.+||-++..+. +++..++..|+|||+|++..-
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 0011346788888876553467899999999999997664 789999999999999998653
No 203
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.54 E-value=9.9e-07 Score=80.02 Aligned_cols=117 Identities=21% Similarity=0.295 Sum_probs=97.3
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (304)
Q Consensus 154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (304)
+...+.+.... |.+|||+=+|-|.++..+++++.- .|+++|++|.++++.+++++.++ ....+..+++|....+.
T Consensus 178 ER~Rva~~v~~--GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~--v~~~v~~i~gD~rev~~ 252 (341)
T COG2520 178 ERARVAELVKE--GETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNK--VEGRVEPILGDAREVAP 252 (341)
T ss_pred HHHHHHhhhcC--CCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcC--ccceeeEEeccHHHhhh
Confidence 34455555555 889999999999999999999862 49999999999999999999998 45669999999988775
Q ss_pred CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT 279 (304)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~~ 279 (304)
.-+.+|-|++... .+-..++....+.+++||++...+.....
T Consensus 253 ~~~~aDrIim~~p----~~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 253 ELGVADRIIMGLP----KSAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred ccccCCEEEeCCC----CcchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 5588999999753 34567889999999999999998887643
No 204
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.54 E-value=1.3e-06 Score=74.05 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=94.8
Q ss_pred CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc
Q 021975 149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD 227 (304)
Q Consensus 149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d 227 (304)
-...+...++..+++....++.||||.=+|+.+..++...| +++|+++|+++...+.+.+..+..+ ....+.+++++
T Consensus 56 ~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag--v~~KI~~i~g~ 133 (237)
T KOG1663|consen 56 LVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG--VDHKITFIEGP 133 (237)
T ss_pred ecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc--ccceeeeeecc
Confidence 33445555666666666778999999999999888887743 6799999999999999999999988 68899999998
Q ss_pred CCCC-C-----CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 228 VCRL-P-----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 228 ~~~l-p-----~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
+.+. + ...++||+++..+-= .+-....+++.++||+||++++--
T Consensus 134 a~esLd~l~~~~~~~tfDfaFvDadK---~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 134 ALESLDELLADGESGTFDFAFVDADK---DNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred hhhhHHHHHhcCCCCceeEEEEccch---HHHHHHHHHHHhhcccccEEEEec
Confidence 8542 1 346899999985411 122367899999999999888744
No 205
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=4.4e-07 Score=85.43 Aligned_cols=111 Identities=18% Similarity=0.276 Sum_probs=88.0
Q ss_pred cHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (304)
Q Consensus 151 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (304)
.+.+.+...+++...++.++||+=||.|.++..+++... +|+|+|+++++++.|+++.+.++. .|+.|..+++++
T Consensus 278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n~i---~N~~f~~~~ae~ 352 (432)
T COG2265 278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAANGI---DNVEFIAGDAEE 352 (432)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHcCC---CcEEEEeCCHHH
Confidence 355667777788877788999999999999999998876 999999999999999999999983 669999999988
Q ss_pred CCCC---CCccceEEecchhccCCCHH------HHHHHHHHhcccCcEEEEEEe
Q 021975 231 LPFA---SGFVDAVHAGAALHCWPSPS------NAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 231 lp~~---~~~fD~V~~~~vl~h~~d~~------~~l~~~~r~LkpgG~lvi~~~ 275 (304)
.... ...+|.|+. ||. .+++. ...++|..+++++..
T Consensus 353 ~~~~~~~~~~~d~Vvv--------DPPR~G~~~~~lk~-l~~~~p~~IvYVSCN 397 (432)
T COG2265 353 FTPAWWEGYKPDVVVV--------DPPRAGADREVLKQ-LAKLKPKRIVYVSCN 397 (432)
T ss_pred HhhhccccCCCCEEEE--------CCCCCCCCHHHHHH-HHhcCCCcEEEEeCC
Confidence 6533 247899998 342 33443 345667777777764
No 206
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.51 E-value=1.3e-07 Score=80.02 Aligned_cols=113 Identities=18% Similarity=0.188 Sum_probs=84.3
Q ss_pred hhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC--CCCCCcc
Q 021975 161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFV 238 (304)
Q Consensus 161 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~f 238 (304)
.++..++.+|||.+.|-|+.+....++|. ..|+-+|.++..++.|.-+-=..++ ....+.++.+|+.+. .|+|.+|
T Consensus 129 ~V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l-~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 129 LVKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSREL-FEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred eeccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccc-cccccEEecccHHHHHhcCCcccc
Confidence 34456789999999999999999999983 5899999999999888654322222 223689999998664 3789999
Q ss_pred ceEEec---chhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 239 DAVHAG---AALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 239 D~V~~~---~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
|+|+.. +++.--.--.++.+|++|+|||||.++-.+-
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG 246 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVG 246 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeC
Confidence 999873 1111111235789999999999999886553
No 207
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=2e-06 Score=79.36 Aligned_cols=130 Identities=19% Similarity=0.212 Sum_probs=98.0
Q ss_pred HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-
Q 021975 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP- 232 (304)
Q Consensus 156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp- 232 (304)
.+....+.+.++.+|||+.++.|.=+.+++....+ ..|+++|.++.-++..+++++..| ..++..+..|...++
T Consensus 146 ~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG---~~nv~~~~~d~~~~~~ 222 (355)
T COG0144 146 QLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG---VRNVIVVNKDARRLAE 222 (355)
T ss_pred HHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC---CCceEEEecccccccc
Confidence 34445677888999999999999999999888653 457999999999999999999988 356788888876543
Q ss_pred --CCCCccceEEe------cchhccCCCH----------------HHHHHHHHHhcccCcEEEEEEeCCCCCCccccccc
Q 021975 233 --FASGFVDAVHA------GAALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV 288 (304)
Q Consensus 233 --~~~~~fD~V~~------~~vl~h~~d~----------------~~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~~~~~ 288 (304)
...+.||.|+. .+++.--|+. .++|....++|||||+|+.+|..-....+.-....
T Consensus 223 ~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~ 302 (355)
T COG0144 223 LLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVER 302 (355)
T ss_pred cccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHH
Confidence 22235999997 3455433322 25799999999999999999987755555444433
No 208
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.50 E-value=9.3e-08 Score=79.37 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=80.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (304)
.+.++||+|+|.|..+..++.... +|++.|.|..|..+.+++ +..++.. .+..--+-+||+|.|..
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk----------~ynVl~~--~ew~~t~~k~dli~clN 177 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK----------NYNVLTE--IEWLQTDVKLDLILCLN 177 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhc----------CCceeee--hhhhhcCceeehHHHHH
Confidence 457899999999999999998876 899999999998887762 2222211 11111244699999999
Q ss_pred hhccCCCHHHHHHHHHHhccc-CcEEEEEEeCCCCCCc
Q 021975 246 ALHCWPSPSNAVAEISRILRS-GGVFVGTTFLRYTSST 282 (304)
Q Consensus 246 vl~h~~d~~~~l~~~~r~Lkp-gG~lvi~~~~~~~~~~ 282 (304)
+|..-.+|-++|+.++.+|+| .|+++++-...+..+.
T Consensus 178 lLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYV 215 (288)
T KOG3987|consen 178 LLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYV 215 (288)
T ss_pred HHHhhcChHHHHHHHHHHhccCCCcEEEEEEeccccee
Confidence 999999999999999999999 8998887766544433
No 209
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.48 E-value=5.5e-07 Score=80.53 Aligned_cols=85 Identities=21% Similarity=0.280 Sum_probs=68.0
Q ss_pred HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--
Q 021975 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-- 232 (304)
Q Consensus 156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-- 232 (304)
+.+.+.+...++..+||.+||.|..+..+++..+ ..+|+|+|.++.+++.+++++.. . .++.++++++.++.
T Consensus 9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~----~ri~~i~~~f~~l~~~ 83 (296)
T PRK00050 9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-F----GRFTLVHGNFSNLKEV 83 (296)
T ss_pred HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-C----CcEEEEeCCHHHHHHH
Confidence 3455556666788999999999999999999864 67999999999999999988754 2 58999999998753
Q ss_pred CCCC--ccceEEecc
Q 021975 233 FASG--FVDAVHAGA 245 (304)
Q Consensus 233 ~~~~--~fD~V~~~~ 245 (304)
.+++ ++|+|++..
T Consensus 84 l~~~~~~vDgIl~DL 98 (296)
T PRK00050 84 LAEGLGKVDGILLDL 98 (296)
T ss_pred HHcCCCccCEEEECC
Confidence 2222 799999843
No 210
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=1e-06 Score=74.05 Aligned_cols=110 Identities=22% Similarity=0.286 Sum_probs=78.5
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (304)
Q Consensus 154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (304)
+.++..++--..++..|+|+|+..|.|++.+++. +....|+|+|+.|-- ...++.++++|+..-+
T Consensus 33 L~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~--------------~~~~V~~iq~d~~~~~ 98 (205)
T COG0293 33 LLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK--------------PIPGVIFLQGDITDED 98 (205)
T ss_pred HHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc--------------cCCCceEEeeeccCcc
Confidence 3444444433456889999999999999999987 444569999998732 3577999999997743
Q ss_pred --------CCCCccceEEecch--------hccCCCH---HHHHHHHHHhcccCcEEEEEEeCC
Q 021975 233 --------FASGFVDAVHAGAA--------LHCWPSP---SNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 233 --------~~~~~fD~V~~~~v--------l~h~~d~---~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+....+|+|++... .+|.... ..++.-+..+|+|||.+++-.+..
T Consensus 99 ~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 99 TLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred HHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 33456799997433 1222111 135666778999999999998876
No 211
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.48 E-value=9.4e-07 Score=77.79 Aligned_cols=122 Identities=20% Similarity=0.216 Sum_probs=91.0
Q ss_pred HHHHHHhhc----ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh---cC-------------
Q 021975 155 FKMAQEYFK----SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ---DN------------- 214 (304)
Q Consensus 155 ~~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~---~~------------- 214 (304)
.+.+.+.+. .....+||--|||-|++...++..|. .+.|.|.|--|+-..+-.+.. .+
T Consensus 41 ~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~--~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn 118 (270)
T PF07942_consen 41 LDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY--AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSN 118 (270)
T ss_pred HHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc--eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccC
Confidence 344444444 23456899999999999999999987 999999999886555443321 00
Q ss_pred ---------------------ccCCCCeEEEEccCCCCCCCC---CccceEEecchhccCCCHHHHHHHHHHhcccCcEE
Q 021975 215 ---------------------TILTSNLALVRADVCRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVF 270 (304)
Q Consensus 215 ---------------------~~~~~~i~~~~~d~~~lp~~~---~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l 270 (304)
.....++....+|+......+ ++||+|+..+.|.-..+.-..++.|.++|||||+.
T Consensus 119 ~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~W 198 (270)
T PF07942_consen 119 QKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYW 198 (270)
T ss_pred CCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEE
Confidence 012345777788887654444 79999999988888888899999999999999977
Q ss_pred EEEEeCCC
Q 021975 271 VGTTFLRY 278 (304)
Q Consensus 271 vi~~~~~~ 278 (304)
|=..+..+
T Consensus 199 IN~GPLly 206 (270)
T PF07942_consen 199 INFGPLLY 206 (270)
T ss_pred EecCCccc
Confidence 76666554
No 212
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=1.3e-06 Score=76.21 Aligned_cols=86 Identities=15% Similarity=0.210 Sum_probs=71.8
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (304)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (304)
...++.+.+.....++..|||||+|.|.++..|.+.+. .|+++|+++.++...++.+.. ..+++++.+|+...
T Consensus 16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~n~~vi~~DaLk~ 88 (259)
T COG0030 16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAP-----YDNLTVINGDALKF 88 (259)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhccc-----ccceEEEeCchhcC
Confidence 34456677777777788999999999999999999987 999999999999999997652 36899999999988
Q ss_pred CCCCC-ccceEEec
Q 021975 232 PFASG-FVDAVHAG 244 (304)
Q Consensus 232 p~~~~-~fD~V~~~ 244 (304)
++++- .++.|+++
T Consensus 89 d~~~l~~~~~vVaN 102 (259)
T COG0030 89 DFPSLAQPYKVVAN 102 (259)
T ss_pred cchhhcCCCEEEEc
Confidence 87643 56778775
No 213
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.45 E-value=9.1e-07 Score=77.55 Aligned_cols=110 Identities=11% Similarity=0.113 Sum_probs=81.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc-cCCCCeEEEEccCCCCC-CCCC-ccceEE
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRLP-FASG-FVDAVH 242 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-~~~~~i~~~~~d~~~lp-~~~~-~fD~V~ 242 (304)
+..+||-||.|.|..+..+.+..+..+++.+|+++.+++.|++.+..... ...++++++.+|....- -..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 57899999999999999999887567999999999999999998765321 13478999999985421 1133 899999
Q ss_pred ecchhccCCC----HHHHHHHHHHhcccCcEEEEEEe
Q 021975 243 AGAALHCWPS----PSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 243 ~~~vl~h~~d----~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
....-...+. -..+++.+.+.|+|||++++...
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 8543211111 24789999999999999998763
No 214
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.43 E-value=1.8e-06 Score=74.79 Aligned_cols=85 Identities=15% Similarity=0.242 Sum_probs=71.6
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (304)
Q Consensus 154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (304)
.++.+.+.....++..|||+|.|||.++..+.+.+. +|+++|+++.|+....++.+... ....++++.+|+...++
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gtp--~~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGTP--KSGKLQVLHGDFLKTDL 121 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCCC--ccceeeEEecccccCCC
Confidence 445555556667789999999999999999999988 99999999999999999887654 45789999999988765
Q ss_pred CCCccceEEec
Q 021975 234 ASGFVDAVHAG 244 (304)
Q Consensus 234 ~~~~fD~V~~~ 244 (304)
+ .||.++++
T Consensus 122 P--~fd~cVsN 130 (315)
T KOG0820|consen 122 P--RFDGCVSN 130 (315)
T ss_pred c--ccceeecc
Confidence 4 68999984
No 215
>PRK00536 speE spermidine synthase; Provisional
Probab=98.42 E-value=2.4e-06 Score=75.19 Aligned_cols=99 Identities=15% Similarity=0.147 Sum_probs=76.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-ccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRLPFASGFVDAVHAG 244 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (304)
..++||=||.|.|..++.+.++-. +|+-+|+++.+++.+++.+.... ....++++++.. +.+. ..++||+|+..
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~--~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~--~~~~fDVIIvD 146 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDT--HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL--DIKKYDLIICL 146 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCC--eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc--cCCcCCEEEEc
Confidence 468999999999999999999853 99999999999999999654321 113577777752 2221 23689999986
Q ss_pred chhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 245 AALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
.. .+..+.+.+.+.|+|||+++...
T Consensus 147 s~-----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE-----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC-----CChHHHHHHHHhcCCCcEEEECC
Confidence 42 45678899999999999988754
No 216
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.41 E-value=2.3e-06 Score=80.02 Aligned_cols=104 Identities=21% Similarity=0.378 Sum_probs=89.2
Q ss_pred CeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchh
Q 021975 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 247 (304)
Q Consensus 168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl 247 (304)
-++|-+|||.-.+...+.+.| +..++-+|+|+..++....+.... .+-..+...|+..+.|++++||+|+....+
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~----~~~~~~~~~d~~~l~fedESFdiVIdkGtl 124 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKE----RPEMQMVEMDMDQLVFEDESFDIVIDKGTL 124 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccC----CcceEEEEecchhccCCCcceeEEEecCcc
Confidence 389999999999999998887 569999999999998888766432 367899999999999999999999999999
Q ss_pred ccCCCHH----------HHHHHHHHhcccCcEEEEEEeC
Q 021975 248 HCWPSPS----------NAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 248 ~h~~d~~----------~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
+++-.+. ..+.+++|+|++||+++..+..
T Consensus 125 Dal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 125 DALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred ccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 9874221 3578999999999999988874
No 217
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.40 E-value=3.1e-06 Score=75.40 Aligned_cols=116 Identities=18% Similarity=0.089 Sum_probs=76.5
Q ss_pred HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC-CCCCC
Q 021975 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-RLPFA 234 (304)
Q Consensus 157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~-~lp~~ 234 (304)
.+...+....+.+|||+|+|+|..+.++.+..+ ..+++++|.|+.|++.++..++... ......+...... ..++
T Consensus 24 El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~- 100 (274)
T PF09243_consen 24 ELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP--NNRNAEWRRVLYRDFLPF- 100 (274)
T ss_pred HHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc--ccccchhhhhhhcccccC-
Confidence 344444444567999999999998877776532 4589999999999999999776543 1111111111111 1222
Q ss_pred CCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCCC
Q 021975 235 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
...|+|++.++|..+++. ..+++.+.+.+++ .|++++++.+
T Consensus 101 -~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 101 -PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred -CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 234999999999999872 2355555555554 8999988763
No 218
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.39 E-value=1.1e-05 Score=73.15 Aligned_cols=108 Identities=14% Similarity=0.055 Sum_probs=75.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC----CC--CC
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PF--AS 235 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~--~~ 235 (304)
++..++|+|||+|.-+..|.+. +....++++|+|.++++.+.+++..... ....+.-+++|+.+. +- ..
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHHhhccccccc
Confidence 4668999999999876655443 3345899999999999999999873221 123344488888552 21 12
Q ss_pred CccceEEec-chhccCCCHH--HHHHHHHH-hcccCcEEEEEE
Q 021975 236 GFVDAVHAG-AALHCWPSPS--NAVAEISR-ILRSGGVFVGTT 274 (304)
Q Consensus 236 ~~fD~V~~~-~vl~h~~d~~--~~l~~~~r-~LkpgG~lvi~~ 274 (304)
....+++.. .+|.+++..+ .+|+++++ .|+|||.|++..
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 234566554 4788886554 68999999 999999887754
No 219
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.37 E-value=6.9e-06 Score=68.14 Aligned_cols=126 Identities=17% Similarity=0.174 Sum_probs=94.7
Q ss_pred CCcHHHHHHHHHhhcc--cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc
Q 021975 149 PGPDEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226 (304)
Q Consensus 149 ~~~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~ 226 (304)
|+.++..+.+-+.+.. ..+.++||+=+|+|.++.....+|. ..++.+|.+..+....+++++..+ ...+..++..
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~--~~~~~~~~~~ 100 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALG--LEGEARVLRN 100 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhC--CccceEEEee
Confidence 5566666777777765 5789999999999999999999974 699999999999999999999877 4578889999
Q ss_pred cCCCC-C-CCC-CccceEEecchhcc-CCCHHHHHHH--HHHhcccCcEEEEEEeCC
Q 021975 227 DVCRL-P-FAS-GFVDAVHAGAALHC-WPSPSNAVAE--ISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 227 d~~~l-p-~~~-~~fD~V~~~~vl~h-~~d~~~~l~~--~~r~LkpgG~lvi~~~~~ 277 (304)
|+... + ... +.||+|+..--++. +.+....+.. -..+|+|+|.+++-....
T Consensus 101 da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 101 DALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred cHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 98742 1 222 24999999654441 1222333333 446799999988877654
No 220
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.36 E-value=6.1e-06 Score=70.29 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=84.0
Q ss_pred CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecch
Q 021975 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 246 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 246 (304)
+.+++|||.|.|.-+.-++-..|+.+|+-+|....-+...+...+..++ .++.++++.++++.-....||+|++..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L---~nv~i~~~RaE~~~~~~~~~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL---ENVEIVHGRAEEFGQEKKQYDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC---CCeEEehhhHhhcccccccCcEEEeehc
Confidence 5799999999999999988778888999999999999999988888774 7899999999987632111999999875
Q ss_pred hccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 247 LHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 247 l~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
.+...+.+-+..++|+||.++..-.
T Consensus 145 ----a~L~~l~e~~~pllk~~g~~~~~k~ 169 (215)
T COG0357 145 ----ASLNVLLELCLPLLKVGGGFLAYKG 169 (215)
T ss_pred ----cchHHHHHHHHHhcccCCcchhhhH
Confidence 4556677788889999998765443
No 221
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.36 E-value=4.3e-06 Score=81.37 Aligned_cols=129 Identities=12% Similarity=0.109 Sum_probs=86.2
Q ss_pred CCCCcHHHHHHHHHhhccc-------CCCeEEEEcCCccHHHHHHHHhCC--------CCeEEEEeCCHHHHHHHHHHHH
Q 021975 147 GFPGPDEEFKMAQEYFKSA-------QGGLLVDVSCGSGLFSRKFAKSGT--------YSGVVALDFSENMLRQCYDFIK 211 (304)
Q Consensus 147 ~~~~~~~~~~~l~~~l~~~-------~~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~giD~s~~~~~~a~~~~~ 211 (304)
.|+++..+.+.+.+.+... ...+|||.|||+|.++..+.+..+ ...++|+|+++..+..++.++.
T Consensus 5 qfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~ 84 (524)
T TIGR02987 5 TFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG 84 (524)
T ss_pred ccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence 4566777777777655321 345899999999999988876542 2578999999999999999887
Q ss_pred hcCccCCCCeEEEEccCCCC-----CCCCCccceEEecchhc--cCC---------------------------------
Q 021975 212 QDNTILTSNLALVRADVCRL-----PFASGFVDAVHAGAALH--CWP--------------------------------- 251 (304)
Q Consensus 212 ~~~~~~~~~i~~~~~d~~~l-----p~~~~~fD~V~~~~vl~--h~~--------------------------------- 251 (304)
..+ ...+.+...|.... .-..+.||+|+.+--.. +..
T Consensus 85 ~~~---~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (524)
T TIGR02987 85 EFA---LLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYS 161 (524)
T ss_pred hcC---CCCceeeecccccccccccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchh
Confidence 654 12345555553321 11125799999963221 110
Q ss_pred C----------H-HHH-HHHHHHhcccCcEEEEEEeCCC
Q 021975 252 S----------P-SNA-VAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 252 d----------~-~~~-l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
+ . ..+ ++...++|++||++.+.++...
T Consensus 162 ~~~~~~~g~~~~y~~~f~~~~~~lL~~~G~~~~I~P~s~ 200 (524)
T TIGR02987 162 DPIRKYAGVGTEYSRVFEEISLEIANKNGYVSIISPASW 200 (524)
T ss_pred hhhcccCCcccHHHHHHHHHHHHhcCCCCEEEEEEChHH
Confidence 0 0 113 3567899999999999998764
No 222
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.36 E-value=6.5e-07 Score=72.95 Aligned_cols=72 Identities=22% Similarity=0.308 Sum_probs=56.1
Q ss_pred eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--CCCCc-cceEEec
Q 021975 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGF-VDAVHAG 244 (304)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~-fD~V~~~ 244 (304)
+|+|+.||.|..+.++++.+. +|+++|+++..++.|+.+.+..| ...++.++++|+.++. +.... +|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYG--v~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYG--VADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 799999999999999999987 99999999999999999999988 6789999999997642 22222 8999984
No 223
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.33 E-value=4.4e-07 Score=75.76 Aligned_cols=99 Identities=20% Similarity=0.267 Sum_probs=65.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--------CC--
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA-- 234 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~-- 234 (304)
++.++||+||++|.|+..+.+.+ +...|+|+|+.+.. ...++.++++|+.... +.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~--------------~~~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD--------------PLQNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG--------------S-TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc--------------cccceeeeecccchhhHHHhhhhhcccc
Confidence 45899999999999999999987 44699999998751 2356677777764321 11
Q ss_pred CCccceEEecchhccCCCH-----------HHHHHHHHHhcccCcEEEEEEeCCC
Q 021975 235 SGFVDAVHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~-----------~~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
.+.||+|++........++ ...+.-+...|+|||.+++-.+...
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~ 143 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGP 143 (181)
T ss_dssp TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSST
T ss_pred ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCc
Confidence 2689999997743332221 1345566678999999999888753
No 224
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.27 E-value=1.7e-06 Score=79.85 Aligned_cols=73 Identities=23% Similarity=0.467 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (304)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (304)
+.+.+.+.+++...++ .|||+-||.|.++..+++... +|+|+|.++.+++.|+++++.+++ .++.|+.++.++
T Consensus 183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i---~n~~f~~~~~~~ 255 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGI---DNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE--SHH
T ss_pred HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCC---CcceEEEeeccc
Confidence 4556667777776555 899999999999999999877 999999999999999999999873 789999877644
No 225
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.26 E-value=1.4e-05 Score=73.17 Aligned_cols=140 Identities=16% Similarity=0.078 Sum_probs=98.6
Q ss_pred HHHHhHHHhhhcCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCC-----------------------
Q 021975 134 LYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY----------------------- 190 (304)
Q Consensus 134 ~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~----------------------- 190 (304)
+..++||..- +.-+-.+.+...+...-.-.++..++|-=||+|.++...+..+.+
T Consensus 161 LhkRGyR~~~--g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~ 238 (381)
T COG0116 161 LHKRGYRVYD--GPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWD 238 (381)
T ss_pred hhhccccccC--CCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHH
Confidence 3455555432 222334455555555555555678999999999999888876531
Q ss_pred ---------C-------eEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchh-ccCCCH
Q 021975 191 ---------S-------GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL-HCWPSP 253 (304)
Q Consensus 191 ---------~-------~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl-~h~~d~ 253 (304)
. .++|+|+++.+++.|+.+.+..| ..+.|.|.++|+..++-+-+.+|+|+++--. +-+.+.
T Consensus 239 ~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AG--v~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~ 316 (381)
T COG0116 239 KLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAG--VGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSE 316 (381)
T ss_pred HHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcC--CCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCCh
Confidence 1 27799999999999999999999 7888999999999887443789999996321 112222
Q ss_pred ---H----HHHHHHHHhcccCcEEEEEEeCC
Q 021975 254 ---S----NAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 254 ---~----~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
. .+.+.+++.++-.+.+++++.-.
T Consensus 317 ~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e~ 347 (381)
T COG0116 317 ALVAKLYREFGRTLKRLLAGWSRYVFTTSED 347 (381)
T ss_pred hhHHHHHHHHHHHHHHHhcCCceEEEEccHH
Confidence 1 34556667778778888877543
No 226
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.25 E-value=4.5e-06 Score=70.99 Aligned_cols=116 Identities=15% Similarity=0.185 Sum_probs=68.7
Q ss_pred HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH-------hcCccCCCCeEEEEccCC
Q 021975 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK-------QDNTILTSNLALVRADVC 229 (304)
Q Consensus 157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~-------~~~~~~~~~i~~~~~d~~ 229 (304)
.+.+.++..++...+|||||.|....+.+....-.+.+|||+.+...+.|+...+ ..+. ...++.+..+|+.
T Consensus 33 ~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~-~~~~v~l~~gdfl 111 (205)
T PF08123_consen 33 KILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK-RPGKVELIHGDFL 111 (205)
T ss_dssp HHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB----EEEEECS-TT
T ss_pred HHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc-ccccceeeccCcc
Confidence 3445566677889999999999988777765434469999999998877765432 2221 2457888899987
Q ss_pred CCCCCC---CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 230 RLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 230 ~lp~~~---~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
+.++.. ..-|+|+++.... -++....|.++...||+|-+++-..
T Consensus 112 ~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~~ 158 (205)
T PF08123_consen 112 DPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIISTK 158 (205)
T ss_dssp THHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEESS
T ss_pred ccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEECC
Confidence 644211 2468999987542 1233456788888999988776543
No 227
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.24 E-value=4.1e-06 Score=69.27 Aligned_cols=116 Identities=17% Similarity=0.189 Sum_probs=88.3
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (304)
Q Consensus 154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (304)
..+++...-..-.+++|||+|.|+|......++.| ...|+..|+.+..+...+-+.+.++ ..+.++..|...
T Consensus 67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~ang----v~i~~~~~d~~g--- 138 (218)
T COG3897 67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANG----VSILFTHADLIG--- 138 (218)
T ss_pred HHHHHhcCccccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhcc----ceeEEeeccccC---
Confidence 34444444444578999999999999999999988 4689999999999999888888876 788888888766
Q ss_pred CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
.+..||+|+...++..-+.-.+++.-..++...|-.+++.++.+
T Consensus 139 ~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 139 SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred CCcceeEEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 35789999999887665555677774444444455566777766
No 228
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.23 E-value=1.7e-05 Score=79.73 Aligned_cols=127 Identities=15% Similarity=0.073 Sum_probs=87.9
Q ss_pred CCcHHHHHHHHHhhcc-cCCCeEEEEcCCccHHHHHHHHhC---------------------------------------
Q 021975 149 PGPDEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSG--------------------------------------- 188 (304)
Q Consensus 149 ~~~~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~--------------------------------------- 188 (304)
|-.+.+...+.....- .++..++|.+||+|.++...+...
T Consensus 172 pl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 172 PLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred CCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 3445555555554432 356799999999999998776521
Q ss_pred ---CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC--CCccceEEecchh-ccCC---CHHHHHHH
Q 021975 189 ---TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA--SGFVDAVHAGAAL-HCWP---SPSNAVAE 259 (304)
Q Consensus 189 ---~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~--~~~fD~V~~~~vl-~h~~---d~~~~l~~ 259 (304)
...+++|+|+++.+++.|++++...+ ....+.+.++|+.+++.+ .++||+|+++--. +.+. +...+.++
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g--~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~ 329 (702)
T PRK11783 252 LAELPSKFYGSDIDPRVIQAARKNARRAG--VAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQ 329 (702)
T ss_pred ccccCceEEEEECCHHHHHHHHHHHHHcC--CCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHH
Confidence 01269999999999999999999988 456799999999887643 3579999997432 1222 22334444
Q ss_pred HHHhc---ccCcEEEEEEeCC
Q 021975 260 ISRIL---RSGGVFVGTTFLR 277 (304)
Q Consensus 260 ~~r~L---kpgG~lvi~~~~~ 277 (304)
+...+ .+|+.+++.+...
T Consensus 330 lg~~lk~~~~g~~~~llt~~~ 350 (702)
T PRK11783 330 LGRRLKQQFGGWNAALFSSSP 350 (702)
T ss_pred HHHHHHHhCCCCeEEEEeCCH
Confidence 44444 4898888877543
No 229
>PRK11827 hypothetical protein; Provisional
Probab=98.22 E-value=5.6e-07 Score=60.02 Aligned_cols=46 Identities=15% Similarity=0.336 Sum_probs=38.5
Q ss_pred cCCeeeccCCCccccccCCCCccccccccCceeeCCCCccccCCCCeeeeecccC
Q 021975 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG 111 (304)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~ 111 (304)
.+++++||+|+++|...... +.+.|..|+..|++++|++.++.+..
T Consensus 5 LLeILaCP~ckg~L~~~~~~---------~~Lic~~~~laYPI~dgIPVlL~deA 50 (60)
T PRK11827 5 LLEIIACPVCNGKLWYNQEK---------QELICKLDNLAFPLRDGIPVLLETEA 50 (60)
T ss_pred HHhheECCCCCCcCeEcCCC---------CeEECCccCeeccccCCccccCHHHh
Confidence 46789999999999764422 57999999999999999999987643
No 230
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=98.21 E-value=5e-06 Score=69.04 Aligned_cols=105 Identities=20% Similarity=0.381 Sum_probs=76.0
Q ss_pred CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcc----CCCCeEEEEccCCC-CC--CCCCccc
Q 021975 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI----LTSNLALVRADVCR-LP--FASGFVD 239 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~----~~~~i~~~~~d~~~-lp--~~~~~fD 239 (304)
...+.|||||.|.++..|+..+|+..+.|+||-....++.+++++..+.. ...++.+...+... +| |..+..+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 45799999999999999999999999999999999999999998765411 12455566555543 22 2223222
Q ss_pred eEEecchhccCCCHH-------------HHHHHHHHhcccCcEEEEEEeC
Q 021975 240 AVHAGAALHCWPSPS-------------NAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 240 ~V~~~~vl~h~~d~~-------------~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
- .+..++||. .++++..-+|++||.++..+-.
T Consensus 141 k-----mff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 141 K-----MFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred c-----ceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 2 223345553 4789999999999999877643
No 231
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.19 E-value=1.6e-05 Score=73.69 Aligned_cols=101 Identities=13% Similarity=0.151 Sum_probs=82.0
Q ss_pred CCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC-CCCccceEEec
Q 021975 167 GGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHAG 244 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~V~~~ 244 (304)
+.+|||+.||+|..+..++...+ -.+|+++|+++.+++.++++++.++. .++.+++.|+..+-. ....||+|...
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~---~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV---ENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 35899999999999999988731 35899999999999999999988762 468899999876421 13579999885
Q ss_pred chhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 245 AALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
- . ..+..++..+.+.+++||+|+++.
T Consensus 122 P-f---Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 122 P-F---GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C-C---CCcHHHHHHHHHhcccCCEEEEEe
Confidence 4 2 356679999999999999999873
No 232
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=9.8e-07 Score=58.20 Aligned_cols=46 Identities=22% Similarity=0.534 Sum_probs=39.7
Q ss_pred cCCeeeccCCCccccccCCCCccccccccCceeeCCCCccccCCCCeeeeecccC
Q 021975 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG 111 (304)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~ 111 (304)
.+++++||.|+++|...... +.+.|+.|+..|++.+|++.++++..
T Consensus 5 LLeiLaCP~~kg~L~~~~~~---------~~L~c~~~~~aYpI~dGIPvlL~~ea 50 (60)
T COG2835 5 LLEILACPVCKGPLVYDEEK---------QELICPRCKLAYPIRDGIPVLLPDEA 50 (60)
T ss_pred hheeeeccCcCCcceEeccC---------CEEEecccCceeecccCccccCchhh
Confidence 46889999999998776643 68999999999999999999998643
No 233
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.14 E-value=1.5e-05 Score=63.82 Aligned_cols=102 Identities=20% Similarity=0.216 Sum_probs=70.3
Q ss_pred cCCCeEEEEcCCccHHHHHHHH-----hCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccc
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAK-----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 239 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD 239 (304)
.+...|+|+|||.|+++..++. . ++.+|+|+|.++..++.+.++.+..+.....++.+..++...... ....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 5677999999999999999998 4 567999999999999999998877652223566777766654322 45667
Q ss_pred eEEecchhccCCCHHHHHHHHHHhcccCcEEEEE
Q 021975 240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT 273 (304)
Q Consensus 240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~ 273 (304)
+++..|.--.+. ..+++...+ ++-.+++.
T Consensus 102 ~~vgLHaCG~Ls--~~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 102 ILVGLHACGDLS--DRALRLFIR---PNARFLVL 130 (141)
T ss_pred EEEEeecccchH--HHHHHHHHH---cCCCEEEE
Confidence 888766544332 234444444 55444443
No 234
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.10 E-value=2.6e-05 Score=70.45 Aligned_cols=87 Identities=22% Similarity=0.255 Sum_probs=67.9
Q ss_pred cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (304)
.++.++|||||++|.|+..+.+.|. .|++||..+ +..... ..++|....+|......+.+.+|.|+|.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~-l~~~L~---------~~~~V~h~~~d~fr~~p~~~~vDwvVcD 277 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGP-MAQSLM---------DTGQVEHLRADGFKFRPPRKNVDWLVCD 277 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC--EEEEEechh-cCHhhh---------CCCCEEEEeccCcccCCCCCCCCEEEEe
Confidence 4688999999999999999999986 999999654 222221 2478999988886653236789999997
Q ss_pred chhccCCCHHHHHHHHHHhcccC
Q 021975 245 AALHCWPSPSNAVAEISRILRSG 267 (304)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~Lkpg 267 (304)
.+ ..|.++.+-+.+.|..|
T Consensus 278 mv----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 278 MV----EKPARVAELMAQWLVNG 296 (357)
T ss_pred cc----cCHHHHHHHHHHHHhcC
Confidence 65 46888888888888776
No 235
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.10 E-value=2.4e-05 Score=70.07 Aligned_cols=123 Identities=18% Similarity=0.210 Sum_probs=93.3
Q ss_pred HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--C
Q 021975 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--F 233 (304)
Q Consensus 157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~ 233 (304)
.....+.+.++..|||++++.|.-+.+++.... .+.+++.|+++.-+...+.+++..| ..++..+..|..... .
T Consensus 76 l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g---~~~v~~~~~D~~~~~~~~ 152 (283)
T PF01189_consen 76 LVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG---VFNVIVINADARKLDPKK 152 (283)
T ss_dssp HHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----SSEEEEESHHHHHHHHH
T ss_pred cccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC---CceEEEEeeccccccccc
Confidence 334456677889999999999999888888743 5799999999999999999999887 477888877776541 2
Q ss_pred CCCccceEEe------cchhccCCCH----------------HHHHHHHHHhc----ccCcEEEEEEeCCCCCCc
Q 021975 234 ASGFVDAVHA------GAALHCWPSP----------------SNAVAEISRIL----RSGGVFVGTTFLRYTSST 282 (304)
Q Consensus 234 ~~~~fD~V~~------~~vl~h~~d~----------------~~~l~~~~r~L----kpgG~lvi~~~~~~~~~~ 282 (304)
....||.|+. .+++..-++. .++|+.+.+.+ ||||+++.+|-.-....+
T Consensus 153 ~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eEN 227 (283)
T PF01189_consen 153 PESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEEN 227 (283)
T ss_dssp HTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGT
T ss_pred cccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHH
Confidence 2346999997 2445544433 15789999999 999999998876533333
No 236
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.09 E-value=2.6e-05 Score=69.13 Aligned_cols=105 Identities=12% Similarity=0.233 Sum_probs=77.4
Q ss_pred HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (304)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (304)
....+.+.+.+...++..|||||+|.|.++..|.+.+. +++++|+++..++..++.+.. ..++.++.+|+..+
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~--~v~~vE~d~~~~~~L~~~~~~-----~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGK--RVIAVEIDPDLAKHLKERFAS-----NPNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSS--EEEEEESSHHHHHHHHHHCTT-----CSSEEEEES-TTTS
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccC--cceeecCcHhHHHHHHHHhhh-----cccceeeecchhcc
Confidence 45566777777777889999999999999999999985 999999999999999987652 36899999999887
Q ss_pred CCCC---CccceEEecchhccCCCHHHHHHHHHHhccc
Q 021975 232 PFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRS 266 (304)
Q Consensus 232 p~~~---~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkp 266 (304)
.... ..-..|+++--. + --..++.++...-+.
T Consensus 89 ~~~~~~~~~~~~vv~NlPy-~--is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 89 DLYDLLKNQPLLVVGNLPY-N--ISSPILRKLLELYRF 123 (262)
T ss_dssp CGGGHCSSSEEEEEEEETG-T--GHHHHHHHHHHHGGG
T ss_pred ccHHhhcCCceEEEEEecc-c--chHHHHHHHhhcccc
Confidence 6543 233455554322 1 223566666664444
No 237
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.06 E-value=1.7e-05 Score=65.17 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=78.1
Q ss_pred CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecch
Q 021975 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 246 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 246 (304)
...+.|+|+|+|-++...+.+.. +|++++.+|...+.|.+++...+ ..++.++.+|+.+..| ...|+|+|-..
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~g---~~n~evv~gDA~~y~f--e~ADvvicEml 105 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVPG---DVNWEVVVGDARDYDF--ENADVVICEML 105 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCCC---CcceEEEecccccccc--cccceeHHHHh
Confidence 46899999999999988888765 99999999999999999987665 5899999999999887 35799988432
Q ss_pred --hccCCCHHHHHHHHHHhcccCcEEEE
Q 021975 247 --LHCWPSPSNAVAEISRILRSGGVFVG 272 (304)
Q Consensus 247 --l~h~~d~~~~l~~~~r~LkpgG~lvi 272 (304)
.--......++..+...||-++.++=
T Consensus 106 DTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 11111223567888888898888764
No 238
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=2.4e-06 Score=68.42 Aligned_cols=136 Identities=16% Similarity=0.078 Sum_probs=89.8
Q ss_pred CCcHHHHHHHHHhhcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc
Q 021975 149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD 227 (304)
Q Consensus 149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d 227 (304)
|..+.+.-.+........+..|||+|.|. |..+..++.+.+...|...|-++..++..++..-.+......+...+.-+
T Consensus 12 pseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~ 91 (201)
T KOG3201|consen 12 PSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWL 91 (201)
T ss_pred ccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHH
Confidence 33344444455444455678999999995 55566666677788999999999999999886544321112222222222
Q ss_pred CCC--CCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCCCCCccc
Q 021975 228 VCR--LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL 284 (304)
Q Consensus 228 ~~~--lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~ 284 (304)
... ......+||+|++...+..-.--..+++.|.++|+|.|.-++..+.+..+...|
T Consensus 92 ~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF 150 (201)
T KOG3201|consen 92 IWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKF 150 (201)
T ss_pred HhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHH
Confidence 211 112345899999977654433345788999999999999999888876555444
No 239
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.05 E-value=7e-05 Score=65.66 Aligned_cols=108 Identities=23% Similarity=0.262 Sum_probs=69.4
Q ss_pred CCeEEEEcCCcc--HHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--CC----CCc
Q 021975 167 GGLLVDVSCGSG--LFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FA----SGF 237 (304)
Q Consensus 167 ~~~vLDiGcG~G--~~~~~l~~-~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~----~~~ 237 (304)
-...||||||-= ..+.++++ ..|.++|+-+|.+|-.+..++..+.... .....++++|+.+.. +. .+-
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~---~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP---RGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T---TSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC---CccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 357999999942 34455544 4788999999999999999999887543 123889999997732 11 122
Q ss_pred cc-----eEEecchhccCC---CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 238 VD-----AVHAGAALHCWP---SPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 238 fD-----~V~~~~vl~h~~---d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+| .|++..+|||++ +|..+++.+...|.||.+|+++-...
T Consensus 146 lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 146 LDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp --TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred CCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 33 678889999996 57799999999999999999988765
No 240
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.01 E-value=7e-06 Score=69.01 Aligned_cols=93 Identities=17% Similarity=0.208 Sum_probs=74.9
Q ss_pred CCcHHHHHHHHHhhccc-CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc
Q 021975 149 PGPDEEFKMAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD 227 (304)
Q Consensus 149 ~~~~~~~~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d 227 (304)
..++.+...+...+... ....|+|.-||.|..+..++..++ .|++||++|.-+..|+.+++-.| ...++.|++||
T Consensus 76 vTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYG--I~~rItFI~GD 151 (263)
T KOG2730|consen 76 VTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYG--VPDRITFICGD 151 (263)
T ss_pred eccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeec--CCceeEEEech
Confidence 44566666666655432 456899999999999999999998 99999999999999999999999 67799999999
Q ss_pred CCCC----CCCCCccceEEecc
Q 021975 228 VCRL----PFASGFVDAVHAGA 245 (304)
Q Consensus 228 ~~~l----p~~~~~fD~V~~~~ 245 (304)
+.++ .+....+|+|+.+.
T Consensus 152 ~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 152 FLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred HHHHHHHHhhhhheeeeeecCC
Confidence 9764 34444566777754
No 241
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.00 E-value=1.2e-05 Score=70.32 Aligned_cols=110 Identities=19% Similarity=0.268 Sum_probs=73.6
Q ss_pred CCCeEEEEcCCccHHH-HHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-------------ccCC------------C
Q 021975 166 QGGLLVDVSCGSGLFS-RKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-------------TILT------------S 219 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~-~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~------------~ 219 (304)
++.++||||||+--+. ..+.+... +++..|.++...+..++.++..+ ++.. .
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~--~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFE--EIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEE--EEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhc--ceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 5678999999985442 22233344 89999999999888877775433 0000 0
Q ss_pred Ce-EEEEccCCCCC-CCC-----CccceEEecchhccCC-CHH---HHHHHHHHhcccCcEEEEEEeCC
Q 021975 220 NL-ALVRADVCRLP-FAS-----GFVDAVHAGAALHCWP-SPS---NAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 220 ~i-~~~~~d~~~lp-~~~-----~~fD~V~~~~vl~h~~-d~~---~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
.| .++.+|+.+.+ +.. ..||+|++.++|+... |.. .+++++.++|||||.|++.....
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 12 47788987643 332 2599999999999874 554 67999999999999999988765
No 242
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.00 E-value=7.9e-05 Score=65.92 Aligned_cols=109 Identities=13% Similarity=0.150 Sum_probs=68.1
Q ss_pred CCeEEEEcCCccHHHHHHH-H-hCCCCeEEEEeCCHHHHHHHHHHHH-hcCccCCCCeEEEEccCCCCCCCCCccceEEe
Q 021975 167 GGLLVDVSCGSGLFSRKFA-K-SGTYSGVVALDFSENMLRQCYDFIK-QDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~-~-~~~~~~v~giD~s~~~~~~a~~~~~-~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (304)
+.+|+=||+|.=.++..+. + .+.+..|+++|+++.+++.+++..+ ..+ ...++.|+.+|....+..-..||+|+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H-SSEEEEES-GGGG-GG----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--ccCCeEEEecchhccccccccCCEEEE
Confidence 3599999999866654444 3 3556689999999999999999877 334 468899999999876654568999987
Q ss_pred cchhcc-CCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 244 GAALHC-WPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 244 ~~vl~h-~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
.....- -.+..+++..+.+.++||..+++-....
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~G 233 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHG 233 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEEE--G
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEecchh
Confidence 654331 1266789999999999999999875443
No 243
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.99 E-value=5.2e-05 Score=63.68 Aligned_cols=105 Identities=13% Similarity=0.224 Sum_probs=83.9
Q ss_pred cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC--CCCCCccceEE
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH 242 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~ 242 (304)
.++++||+||-|-|-.-..+.++-+. +=+-||.+++..+..++..-. ...++.++.+--++. .++++.||.|+
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~----ek~nViil~g~WeDvl~~L~d~~FDGI~ 174 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWR----EKENVIILEGRWEDVLNTLPDKHFDGIY 174 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccc----cccceEEEecchHhhhccccccCcceeE
Confidence 56899999999999988888888653 566789999999888774322 336788887776653 26689999999
Q ss_pred ecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
-...-+|..|...+.+.+.++|||+|++-..-
T Consensus 175 yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 175 YDTYSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred eechhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 87766888888899999999999999886644
No 244
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.95 E-value=3.5e-05 Score=61.48 Aligned_cols=59 Identities=25% Similarity=0.318 Sum_probs=51.0
Q ss_pred eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (304)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (304)
++||+|||.|.++..+++.++..+++++|+++.+.+.++++++.++. .++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~---~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL---PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC---CcEEEEEeeeeC
Confidence 48999999999999999998867899999999999999999987762 458888777654
No 245
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.93 E-value=0.00041 Score=59.01 Aligned_cols=118 Identities=17% Similarity=0.186 Sum_probs=79.3
Q ss_pred HHHHHHHHh---hcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC
Q 021975 153 EEFKMAQEY---FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 228 (304)
Q Consensus 153 ~~~~~l~~~---l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~ 228 (304)
++...+..- +...++.+||-+|.++|....+++.- ++.+.|+++|+|+...+..-...+.. .|+--+..|+
T Consensus 57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-----~NIiPIl~DA 131 (229)
T PF01269_consen 57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-----PNIIPILEDA 131 (229)
T ss_dssp HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-----TTEEEEES-T
T ss_pred HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-----CceeeeeccC
Confidence 444455433 33457889999999999999999987 66789999999997655554433332 6888889998
Q ss_pred CCCC---CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 229 CRLP---FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 229 ~~lp---~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
.... .--+.+|+|++.-. +-.+..-++.++...||+||.++++.-.+
T Consensus 132 r~P~~Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~ 181 (229)
T PF01269_consen 132 RHPEKYRMLVEMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIISIKAR 181 (229)
T ss_dssp TSGGGGTTTS--EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred CChHHhhcccccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEecC
Confidence 6521 11347999988532 11223356788888999999999987654
No 246
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=1.4e-05 Score=75.15 Aligned_cols=115 Identities=13% Similarity=0.183 Sum_probs=82.9
Q ss_pred CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC
Q 021975 149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 228 (304)
Q Consensus 149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~ 228 (304)
...+.+...+.+......+..+||+.||+|.++..+++... .|+|+|+++++++.|+.+.+.++ ..|.+|+++-+
T Consensus 366 ~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~Ng---isNa~Fi~gqa 440 (534)
T KOG2187|consen 366 SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQING---ISNATFIVGQA 440 (534)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhcC---ccceeeeecch
Confidence 33445566777777777788999999999999999999876 99999999999999999999987 48999999966
Q ss_pred CCCC--CCCC---ccceEEecchhccCCCH------HHHHHHHHHhcccCcEEEEEEe
Q 021975 229 CRLP--FASG---FVDAVHAGAALHCWPSP------SNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 229 ~~lp--~~~~---~fD~V~~~~vl~h~~d~------~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
+++- +-+. +=++|.. -|| ..++..+.+.-++--.++++..
T Consensus 441 E~~~~sl~~~~~~~~~~v~i-------iDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn 491 (534)
T KOG2187|consen 441 EDLFPSLLTPCCDSETLVAI-------IDPPRKGLHMKVIKALRAYKNPRRLVYVSCN 491 (534)
T ss_pred hhccchhcccCCCCCceEEE-------ECCCcccccHHHHHHHHhccCccceEEEEcC
Confidence 6531 1111 1232222 133 2466666666657666666554
No 247
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.92 E-value=7.7e-05 Score=67.00 Aligned_cols=88 Identities=10% Similarity=0.153 Sum_probs=70.5
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-
Q 021975 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP- 232 (304)
Q Consensus 154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp- 232 (304)
+.+.+.+.+...+++.++|.-+|.|..+..+.+..+.++|+|+|.++.+++.++++++... .++.++++++.++.
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~----~R~~~i~~nF~~l~~ 83 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE----GRVVLIHDNFANFFE 83 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC----CcEEEEeCCHHHHHH
Confidence 3445556666677889999999999999999988545899999999999999999887543 68999999987753
Q ss_pred ----CCCCccceEEecc
Q 021975 233 ----FASGFVDAVHAGA 245 (304)
Q Consensus 233 ----~~~~~fD~V~~~~ 245 (304)
....++|.|++..
T Consensus 84 ~l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 84 HLDELLVTKIDGILVDL 100 (305)
T ss_pred HHHhcCCCcccEEEEec
Confidence 1235789998843
No 248
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.71 E-value=0.00018 Score=56.96 Aligned_cols=83 Identities=20% Similarity=0.324 Sum_probs=59.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--CCCCccceEEecchhccCC--------CHH---HHHH
Q 021975 192 GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAGAALHCWP--------SPS---NAVA 258 (304)
Q Consensus 192 ~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~~vl~h~~--------d~~---~~l~ 258 (304)
+|+|+|+-+.+++..+++++..+ ...++.++..+=+.+. .+.+.+|+++.+. -++| .+. .+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~--~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG--LEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT---GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC--CCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHH
Confidence 58999999999999999999988 4568999998877664 2335899988864 3443 333 5788
Q ss_pred HHHHhcccCcEEEEEEeCCC
Q 021975 259 EISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 259 ~~~r~LkpgG~lvi~~~~~~ 278 (304)
.+.++|+|||+++++.|...
T Consensus 77 ~al~lL~~gG~i~iv~Y~GH 96 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPGH 96 (140)
T ss_dssp HHHHHEEEEEEEEEEE--ST
T ss_pred HHHHhhccCCEEEEEEeCCC
Confidence 99999999999999998753
No 249
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=97.70 E-value=1.5e-05 Score=55.39 Aligned_cols=47 Identities=28% Similarity=0.610 Sum_probs=32.1
Q ss_pred CcCCeeeccCCCcccccc---C---------C-------CCccccccccCceeeCCCCccccCCCC
Q 021975 56 LEGDLFSCPICYEPLIRK---G---------P-------TGLTLGAIYRSGFKCRKCDKTYSSKDN 102 (304)
Q Consensus 56 ~~~~~l~CP~C~~~l~~~---~---------~-------~~~~~~~i~~~~l~C~~C~~~~~~~~g 102 (304)
..+++++||.|+++|... . + ...-...+.++.+.|+.|++.|++++|
T Consensus 3 ~llniL~Cp~ck~pL~~~~l~~~~~~~~~~lp~~~~~~~~~l~~~~i~eg~L~Cp~c~r~YPI~dG 68 (68)
T PF03966_consen 3 LLLNILACPVCKGPLDWEALVETAQLGLSELPKELPEDYHVLLEVEIVEGELICPECGREYPIRDG 68 (68)
T ss_dssp GGCGTBB-TTTSSBEHHHHHHHHHHCCCCHCHHCHHCHCEHHCTEETTTTEEEETTTTEEEEEETT
T ss_pred hHHhhhcCCCCCCcchHHHHHHHHHhCcccCCCCCccchhhhhcccccCCEEEcCCCCCEEeCCCC
Confidence 457889999999988000 0 0 000114567799999999999999886
No 250
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.66 E-value=9.7e-06 Score=61.41 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=42.8
Q ss_pred EEEcCCccHHHHHHHHhCCC---CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC--CCCCCccceEEecc
Q 021975 171 VDVSCGSGLFSRKFAKSGTY---SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHAGA 245 (304)
Q Consensus 171 LDiGcG~G~~~~~l~~~~~~---~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~~~~ 245 (304)
||||+..|..+..+++.... .+++++|..+. .+..++.++..+ ...+++++.++..+. .++.++||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~--~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG--LSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS-------------GG--G-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcC--CCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 68999999988887765322 37999999995 333444444333 346799999998543 13357899999865
Q ss_pred hhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 246 ALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 246 vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
. |..+.....++.+.+.|+|||++++-+
T Consensus 78 ~-H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 D-HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C-CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2 111233456888999999999998754
No 251
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.66 E-value=0.00018 Score=59.20 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=70.5
Q ss_pred ccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc-cCCCC--------CC
Q 021975 164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRL--------PF 233 (304)
Q Consensus 164 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~l--------p~ 233 (304)
..++.+|||+||..|.|+.-..++ +|++-|.|+|+-.-. ...++.++++ |+.+. .+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~--------------p~~Ga~~i~~~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE--------------PPEGATIIQGNDVTDPETYRKIFEAL 132 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc--------------CCCCcccccccccCCHHHHHHHHHhC
Confidence 456899999999999999988877 688999999984321 3456777776 66552 15
Q ss_pred CCCccceEEecchhccC----CCHH-------HHHHHHHHhcccCcEEEEEEeCC
Q 021975 234 ASGFVDAVHAGAALHCW----PSPS-------NAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 234 ~~~~fD~V~~~~vl~h~----~d~~-------~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
++..+|+|++...-.-. .|-. .++.-....++|+|.++.-.|..
T Consensus 133 p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 133 PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 67889999985432111 1212 23444456788999999988876
No 252
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.65 E-value=0.00029 Score=64.87 Aligned_cols=123 Identities=16% Similarity=0.150 Sum_probs=90.8
Q ss_pred hcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---CCCCc
Q 021975 162 FKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF 237 (304)
Q Consensus 162 l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~ 237 (304)
+.+.++.+|||+.+..|.=+.+++..- -.+.+++.|.+..-++..+.++...| ..+..+...|...+| ++. +
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG---v~ntiv~n~D~~ef~~~~~~~-~ 312 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG---VTNTIVSNYDGREFPEKEFPG-S 312 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC---CCceEEEccCcccccccccCc-c
Confidence 456789999999999998776666542 23589999999999999999999987 467777788886654 444 8
Q ss_pred cceEEec----c--hhcc----------------CCCHHHHHHHHHHhcccCcEEEEEEeCCCCCCccccccc
Q 021975 238 VDAVHAG----A--ALHC----------------WPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV 288 (304)
Q Consensus 238 fD~V~~~----~--vl~h----------------~~d~~~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~~~~~ 288 (304)
||-|+.. . ++.- ..-..++|.....++|+||+|+-+|..-....+.+...+
T Consensus 313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~y 385 (460)
T KOG1122|consen 313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDY 385 (460)
T ss_pred cceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHH
Confidence 9999863 2 2211 111135788888999999999999987655555555444
No 253
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.65 E-value=0.00033 Score=59.59 Aligned_cols=73 Identities=18% Similarity=0.287 Sum_probs=56.3
Q ss_pred EEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCC-ccceEEecc
Q 021975 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG-FVDAVHAGA 245 (304)
Q Consensus 170 vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~-~fD~V~~~~ 245 (304)
|.||||-.|++..+|.+.+.-..++++|+++.-++.|+++++..+ ...++.+..+|.... ++.+ ..|+|+..+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~--l~~~i~~rlgdGL~~-l~~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG--LEDRIEVRLGDGLEV-LKPGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---TTTEEEEE-SGGGG---GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CcccEEEEECCcccc-cCCCCCCCEEEEec
Confidence 689999999999999999877789999999999999999999988 578899999996442 2233 378777643
No 254
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.64 E-value=0.00041 Score=62.76 Aligned_cols=105 Identities=20% Similarity=0.242 Sum_probs=79.8
Q ss_pred CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH--HhcC--ccCCCCeEEEEccCCCCC-CCCCccceE
Q 021975 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI--KQDN--TILTSNLALVRADVCRLP-FASGFVDAV 241 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~--~~~~--~~~~~~i~~~~~d~~~lp-~~~~~fD~V 241 (304)
..++|-+|.|.|..++++.+.-...+++-+|.+|.|++.++++. ...+ ....++++++..|+.+.- -....||+|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 46899999999999999998743569999999999999999433 2221 114578999999986642 234589999
Q ss_pred EecchhccCCCHH----------HHHHHHHHhcccCcEEEEEEeC
Q 021975 242 HAGAALHCWPSPS----------NAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 242 ~~~~vl~h~~d~~----------~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
+... +||. ++..-+.+.|+++|.+++..-.
T Consensus 370 IVDl-----~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags 409 (508)
T COG4262 370 IVDL-----PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS 409 (508)
T ss_pred EEeC-----CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence 8853 4553 5778889999999998885533
No 255
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.56 E-value=0.00026 Score=58.63 Aligned_cols=114 Identities=19% Similarity=0.255 Sum_probs=74.9
Q ss_pred hhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHH------HHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975 161 YFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLR------QCYDFIKQDNTILTSNLALVRADVCRLPF 233 (304)
Q Consensus 161 ~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~------~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (304)
+....++.+|+|+=.|.|+|++.++.. ++.+.|+++-+.+...- ..+...++. ...++..+-.+...++
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~---~~aN~e~~~~~~~A~~- 118 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP---VYANVEVIGKPLVALG- 118 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh---hhhhhhhhCCcccccC-
Confidence 445567999999999999999999987 67668888766553111 011111111 2345566666665555
Q ss_pred CCCccceEEecchhcc-------CCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975 234 ASGFVDAVHAGAALHC-------WPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 234 ~~~~fD~V~~~~vl~h-------~~d~~~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
+.+..|++.....-|- -.....+.+++++.|||||++++.++...
T Consensus 119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~ 170 (238)
T COG4798 119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRAD 170 (238)
T ss_pred CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 4456777766332221 12345789999999999999999998764
No 256
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.50 E-value=2.9e-05 Score=61.80 Aligned_cols=58 Identities=26% Similarity=0.220 Sum_probs=48.8
Q ss_pred CeEEEEccCCCCCCCCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCC
Q 021975 220 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 220 ~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
.+.+++......+|.+++.|+|.+.+|+||+.-. ..+++++++.|||||+|-++.+..
T Consensus 30 ~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 30 EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 4566665556678999999999999999999743 478999999999999999998765
No 257
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.49 E-value=0.00034 Score=60.59 Aligned_cols=105 Identities=17% Similarity=0.154 Sum_probs=71.4
Q ss_pred CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecch
Q 021975 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 246 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 246 (304)
..+|+|||||.=.++..+....+...++|+|++..+++.....+...+ ....+...|+..-+ +....|+.+..=+
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~----~~~~~~v~Dl~~~~-~~~~~DlaLllK~ 180 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG----VPHDARVRDLLSDP-PKEPADLALLLKT 180 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-----CEEEEEE-TTTSH-TTSEESEEEEET-
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC----CCcceeEeeeeccC-CCCCcchhhHHHH
Confidence 679999999999998888877767899999999999999999988865 67777778887654 3578999999877
Q ss_pred hccCCCHHH-HHHHHHHhcccCcEEEEEEeCC
Q 021975 247 LHCWPSPSN-AVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 247 l~h~~d~~~-~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
++.+..... .--++...++- =.++++.+.+
T Consensus 181 lp~le~q~~g~g~~ll~~~~~-~~~vVSfPtr 211 (251)
T PF07091_consen 181 LPCLERQRRGAGLELLDALRS-PHVVVSFPTR 211 (251)
T ss_dssp HHHHHHHSTTHHHHHHHHSCE-SEEEEEEES-
T ss_pred HHHHHHHhcchHHHHHHHhCC-CeEEEecccc
Confidence 776643321 11222333321 2455555554
No 258
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.0013 Score=52.04 Aligned_cols=142 Identities=15% Similarity=0.175 Sum_probs=95.6
Q ss_pred CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC
Q 021975 149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 228 (304)
Q Consensus 149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~ 228 (304)
+...+..+.+..++..++.++.+|+|.|.|....+.++.+ -...+|+|+++-.+.+++-..-..+ ......|..-|+
T Consensus 55 pAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g--~~k~trf~Rkdl 131 (199)
T KOG4058|consen 55 PATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAG--CAKSTRFRRKDL 131 (199)
T ss_pred CccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHh--cccchhhhhhhh
Confidence 4445667777888888887899999999999999999987 3488999999999999887766666 567788999898
Q ss_pred CCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCCCCCccccccc-cccccccccccccc
Q 021975 229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV-LREDSAELQLFDRR 302 (304)
Q Consensus 229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 302 (304)
.+..+.+ |..|+.+.+-.-++|. -.++..-+..+..++..-+-- ..|.... +.+....+.+.|+.
T Consensus 132 wK~dl~d--y~~vviFgaes~m~dL---e~KL~~E~p~nt~vvacRFPL----P~w~leh~igeG~d~VW~Yd~n 197 (199)
T KOG4058|consen 132 WKVDLRD--YRNVVIFGAESVMPDL---EDKLRTELPANTRVVACRFPL----PTWQLEHAIGEGLDRVWAYDVN 197 (199)
T ss_pred hhccccc--cceEEEeehHHHHhhh---HHHHHhhCcCCCeEEEEecCC----CccchHhHhhcCcceEEEEeCC
Confidence 8876654 4445554442223333 334455566677777665432 2233222 33334556655554
No 259
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.0012 Score=56.61 Aligned_cols=106 Identities=20% Similarity=0.271 Sum_probs=74.3
Q ss_pred HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEE-EEccCCCCC--
Q 021975 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL-VRADVCRLP-- 232 (304)
Q Consensus 156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~-~~~d~~~lp-- 232 (304)
..+..+--..++.++||||..||.|+..+.+.|. ..|+++|..-..+..--+ ..+++.. ...++..+.
T Consensus 69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR--------~d~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLR--------NDPRVIVLERTNVRYLTPE 139 (245)
T ss_pred HHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHh--------cCCcEEEEecCChhhCCHH
Confidence 3444444455788999999999999999999973 699999998766655433 2344443 344554432
Q ss_pred -CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
+. +..|++++.-++- ....+|..+..+++++|-++...
T Consensus 140 ~~~-~~~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 140 DFT-EKPDLIVIDVSFI---SLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred Hcc-cCCCeEEEEeehh---hHHHHHHHHHHhcCCCceEEEEe
Confidence 32 3678888865444 45678999999999999877654
No 260
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.46 E-value=0.0011 Score=56.14 Aligned_cols=88 Identities=15% Similarity=0.183 Sum_probs=71.3
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (304)
Q Consensus 154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (304)
....+..+++. +..+.||||-.+++..+|.+.++...+++.|+++.-++.|.+++...+ ...+++...+|....--
T Consensus 6 RL~~va~~V~~--~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~--l~~~i~vr~~dgl~~l~ 81 (226)
T COG2384 6 RLTTVANLVKQ--GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN--LSERIDVRLGDGLAVLE 81 (226)
T ss_pred HHHHHHHHHHc--CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC--CcceEEEeccCCccccC
Confidence 34456666655 455999999999999999999988899999999999999999999998 57889999999844222
Q ss_pred CCCccceEEecc
Q 021975 234 ASGFVDAVHAGA 245 (304)
Q Consensus 234 ~~~~fD~V~~~~ 245 (304)
.+..+|+|+..+
T Consensus 82 ~~d~~d~ivIAG 93 (226)
T COG2384 82 LEDEIDVIVIAG 93 (226)
T ss_pred ccCCcCEEEEeC
Confidence 344789888643
No 261
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.42 E-value=0.00085 Score=59.59 Aligned_cols=123 Identities=21% Similarity=0.203 Sum_probs=79.6
Q ss_pred HHHHHHHhhcc----cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH---HhcC------------
Q 021975 154 EFKMAQEYFKS----AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI---KQDN------------ 214 (304)
Q Consensus 154 ~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~---~~~~------------ 214 (304)
+++.+..+++. ....+||--|||.|.++..++..|+ ++-|=|+|--|+--..=.+ +..+
T Consensus 134 ii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~s 211 (369)
T KOG2798|consen 134 IIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYS 211 (369)
T ss_pred HHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccc
Confidence 44455554443 3456899999999999999999998 7777788776643222211 1111
Q ss_pred --------c--------------cCCCCeEEEEccCCCC---CCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcE
Q 021975 215 --------T--------------ILTSNLALVRADVCRL---PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGV 269 (304)
Q Consensus 215 --------~--------------~~~~~i~~~~~d~~~l---p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~ 269 (304)
+ ..........||+.+. +-..+.||+|+..+.|.--.+.-..++.|..+|||||+
T Consensus 212 n~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGv 291 (369)
T KOG2798|consen 212 NSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGV 291 (369)
T ss_pred cccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcE
Confidence 0 0001112223444332 11124699999988888878888999999999999999
Q ss_pred EEEEEeCCC
Q 021975 270 FVGTTFLRY 278 (304)
Q Consensus 270 lvi~~~~~~ 278 (304)
.+=..+.-+
T Consensus 292 WiNlGPLlY 300 (369)
T KOG2798|consen 292 WINLGPLLY 300 (369)
T ss_pred EEeccceee
Confidence 887665543
No 262
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.0028 Score=57.72 Aligned_cols=140 Identities=19% Similarity=0.161 Sum_probs=95.5
Q ss_pred hhcccCCCeEEEEcCCccHHHHHHHHhCCC----CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC---
Q 021975 161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTY----SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--- 233 (304)
Q Consensus 161 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~----~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--- 233 (304)
.+...++.+|||+.+..|.-+.++.+.... ..|++=|.++.-+...+..+.... ..++.+...|+...|-
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~---~~~~~v~~~~~~~~p~~~~ 226 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP---SPNLLVTNHDASLFPNIYL 226 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC---Ccceeeecccceecccccc
Confidence 345678999999999999988888877542 389999999998888888775443 4667777777765541
Q ss_pred ------CCCccceEEec------chhccCCCHH-----------------HHHHHHHHhcccCcEEEEEEeCCCCCCccc
Q 021975 234 ------ASGFVDAVHAG------AALHCWPSPS-----------------NAVAEISRILRSGGVFVGTTFLRYTSSTSL 284 (304)
Q Consensus 234 ------~~~~fD~V~~~------~vl~h~~d~~-----------------~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~ 284 (304)
....||-|++. .++.+-++.. .+|..-.++||+||.++-+|..-.+..+.-
T Consensus 227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEa 306 (375)
T KOG2198|consen 227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEA 306 (375)
T ss_pred ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHH
Confidence 23368988873 3344433221 468888999999999999997664433322
Q ss_pred c-cccccccccccccccccC
Q 021975 285 T-GRVLREDSAELQLFDRRR 303 (304)
Q Consensus 285 ~-~~~~~~~~~~~~~~~~~~ 303 (304)
+ .+.++.....+++.+++.
T Consensus 307 VV~~~L~~~~~~~~lv~~~~ 326 (375)
T KOG2198|consen 307 VVQEALQKVGGAVELVDVSG 326 (375)
T ss_pred HHHHHHHHhcCcccceeecc
Confidence 2 344544555555555443
No 263
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.28 E-value=0.002 Score=57.74 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=47.1
Q ss_pred CCeEEEEcCCccHHHHHH--HHhCCCCeEEEEeCCHHHHHHHHHHHHhc-CccCCCCeEEEEccCCC-----CCCCCCcc
Q 021975 167 GGLLVDVSCGSGLFSRKF--AKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCR-----LPFASGFV 238 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l--~~~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~d~~~-----lp~~~~~f 238 (304)
..++||||+|....--.| ...++ +++|+|+++..++.|+++++.+ + ...+|.++...-.. +...++.|
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W--~fvaTdID~~sl~~A~~nv~~N~~--L~~~I~l~~~~~~~~i~~~i~~~~e~~ 178 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW--SFVATDIDPKSLESARENVERNPN--LESRIELRKQKNPDNIFDGIIQPNERF 178 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T---TTTEEEEE--ST-SSTTTSTT--S-E
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC--eEEEecCCHHHHHHHHHHHHhccc--cccceEEEEcCCccccchhhhccccee
Confidence 457999999988543222 23355 9999999999999999999998 6 56788887653222 22234689
Q ss_pred ceEEecchhcc
Q 021975 239 DAVHAGAALHC 249 (304)
Q Consensus 239 D~V~~~~vl~h 249 (304)
|+.+|+--++.
T Consensus 179 dftmCNPPFy~ 189 (299)
T PF05971_consen 179 DFTMCNPPFYS 189 (299)
T ss_dssp EEEEE-----S
T ss_pred eEEecCCcccc
Confidence 99999765554
No 264
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.004 Score=52.11 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=83.3
Q ss_pred HHHHHHHHhh---cccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC
Q 021975 153 EEFKMAQEYF---KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229 (304)
Q Consensus 153 ~~~~~l~~~l---~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~ 229 (304)
++...+..-+ +..++.+||-+|+.+|....+++.--..+.++++|+|+...+..-...+.. .|+--+..|+.
T Consensus 60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-----~Ni~PIL~DA~ 134 (231)
T COG1889 60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-----PNIIPILEDAR 134 (231)
T ss_pred HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-----CCceeeecccC
Confidence 3444554433 346789999999999999999998755679999999998776666555443 57888888886
Q ss_pred CCC---CCCCccceEEecchhccCCCHH---HHHHHHHHhcccCcEEEEEEeCCC
Q 021975 230 RLP---FASGFVDAVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 230 ~lp---~~~~~fD~V~~~~vl~h~~d~~---~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
... .--+.+|+|+.. +.+|. -+..++...||+||.++++.-.+.
T Consensus 135 ~P~~Y~~~Ve~VDviy~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArS 184 (231)
T COG1889 135 KPEKYRHLVEKVDVIYQD-----VAQPNQAEILADNAEFFLKKGGYVVIAIKARS 184 (231)
T ss_pred CcHHhhhhcccccEEEEe-----cCCchHHHHHHHHHHHhcccCCeEEEEEEeec
Confidence 521 112458888763 33443 367888999999998888766553
No 265
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.25 E-value=0.00052 Score=64.80 Aligned_cols=99 Identities=18% Similarity=0.242 Sum_probs=66.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHH----HHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceE
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSEN----MLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 241 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~----~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V 241 (304)
.-..|+|+.+|.|.|..+|.+.. |+.+..-+. .+....+ .|+ +..++.=.+.++.-..+||+|
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~~----VWVMNVVP~~~~ntL~vIyd----RGL-----IG~yhDWCE~fsTYPRTYDLl 431 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDDP----VWVMNVVPVSGPNTLPVIYD----RGL-----IGVYHDWCEAFSTYPRTYDLL 431 (506)
T ss_pred ceeeeeeecccccHHHHHhccCC----ceEEEecccCCCCcchhhhh----ccc-----chhccchhhccCCCCcchhhe
Confidence 34569999999999999998652 444443332 2222222 111 122222224555557899999
Q ss_pred EecchhccCC---CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 242 HAGAALHCWP---SPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 242 ~~~~vl~h~~---d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
++.+++.+.. +...++-|+-|+|+|||.+++-+...
T Consensus 432 HA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~ 470 (506)
T PF03141_consen 432 HADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD 470 (506)
T ss_pred ehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHH
Confidence 9999887765 45678999999999999999977544
No 266
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.14 E-value=0.00088 Score=60.25 Aligned_cols=85 Identities=18% Similarity=0.297 Sum_probs=62.3
Q ss_pred HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---
Q 021975 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--- 232 (304)
Q Consensus 156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--- 232 (304)
+-+.+.+...+++.++|.--|.|..+..+.+..++++++|+|-++.+++.++++++... .++.++.+++.++.
T Consensus 10 ~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~----~r~~~~~~~F~~l~~~l 85 (310)
T PF01795_consen 10 KEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD----DRFIFIHGNFSNLDEYL 85 (310)
T ss_dssp HHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC----TTEEEEES-GGGHHHHH
T ss_pred HHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc----ceEEEEeccHHHHHHHH
Confidence 34555666777889999999999999999998777899999999999999998876543 78999999987754
Q ss_pred --C-CCCccceEEec
Q 021975 233 --F-ASGFVDAVHAG 244 (304)
Q Consensus 233 --~-~~~~fD~V~~~ 244 (304)
. .-..+|.|++.
T Consensus 86 ~~~~~~~~~dgiL~D 100 (310)
T PF01795_consen 86 KELNGINKVDGILFD 100 (310)
T ss_dssp HHTTTTS-EEEEEEE
T ss_pred HHccCCCccCEEEEc
Confidence 2 34578988874
No 267
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.12 E-value=0.0022 Score=54.25 Aligned_cols=111 Identities=11% Similarity=0.121 Sum_probs=58.0
Q ss_pred HhhcccCCCeEEEEcCCccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---
Q 021975 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--- 232 (304)
Q Consensus 160 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--- 232 (304)
+.+-..++..|+|+|.-.|..+..++.. +..++|+|+|++..... ++..+.+. ...+++++++|..+..
T Consensus 26 eli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp--~~~rI~~i~Gds~d~~~~~ 101 (206)
T PF04989_consen 26 ELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHP--MSPRITFIQGDSIDPEIVD 101 (206)
T ss_dssp HHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG------TTEEEEES-SSSTHHHH
T ss_pred HHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhcc--ccCceEEEECCCCCHHHHH
Confidence 3343445679999999999877766542 35679999999643321 22222222 3478999999987642
Q ss_pred -CC----CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 233 -FA----SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 233 -~~----~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
.. .....+|+. .+=|...+..+.|+....++++|+++++.+-
T Consensus 102 ~v~~~~~~~~~vlVil-Ds~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 102 QVRELASPPHPVLVIL-DSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp TSGSS----SSEEEEE-SS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred HHHHhhccCCceEEEE-CCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 11 112223333 3333345567788889999999999998653
No 268
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.09 E-value=0.0075 Score=58.22 Aligned_cols=147 Identities=18% Similarity=0.114 Sum_probs=101.4
Q ss_pred chhhHHHHHhHHHhhh---c--CCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC----CCeEEEEeCC
Q 021975 129 PFVSFLYERGWRQNFN---R--SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT----YSGVVALDFS 199 (304)
Q Consensus 129 ~~~s~~~~~~w~~~~~---~--~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~----~~~v~giD~s 199 (304)
+.+...|+..-+..-. . +.+++|.+..+++.+.+.+.+..+|.|..||+|.++....+... ...++|.|++
T Consensus 144 d~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~ 223 (489)
T COG0286 144 DLFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIN 223 (489)
T ss_pred cchhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCC
Confidence 3444555554333221 1 44788999999999999876777999999999998877766531 2579999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC-----CCCccceEEecchhc---cC-------C-------------
Q 021975 200 ENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----ASGFVDAVHAGAALH---CW-------P------------- 251 (304)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-----~~~~fD~V~~~~vl~---h~-------~------------- 251 (304)
+.....|+.++-.++. ...+....+|...-|. ..+.||+|+++--+. +. .
T Consensus 224 ~~t~~l~~mN~~lhgi--~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (489)
T COG0286 224 DTTYRLAKMNLILHGI--EGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTK 301 (489)
T ss_pred HHHHHHHHHHHHHhCC--CccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCC
Confidence 9999999999988873 2245556665544342 236799998853221 11 0
Q ss_pred -CH-HHHHHHHHHhcccCcEEEEEEeCC
Q 021975 252 -SP-SNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 252 -d~-~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
.. ..++..+...|+|||+..++.+..
T Consensus 302 ~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 302 NSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred CchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 01 368999999999999766666544
No 269
>PRK10742 putative methyltransferase; Provisional
Probab=96.99 E-value=0.0049 Score=53.60 Aligned_cols=118 Identities=13% Similarity=-0.024 Sum_probs=81.2
Q ss_pred HHHHHhhcccCCC--eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc------CccCCCCeEEEEcc
Q 021975 156 KMAQEYFKSAQGG--LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD------NTILTSNLALVRAD 227 (304)
Q Consensus 156 ~~l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~~~~~~~i~~~~~d 227 (304)
+.+.+.+...++. +|||.-+|.|..+..++..|. +|+++|-++.+....++.++.. +.....+++++.+|
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~--~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 3455555555555 899999999999999999986 8999999999999998888763 10011468889998
Q ss_pred CCCC-CCCCCccceEEecchhcc--------------------CCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 228 VCRL-PFASGFVDAVHAGAALHC--------------------WPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 228 ~~~l-p~~~~~fD~V~~~~vl~h--------------------~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
..+. .-...+||+|++.-.+.| -++...+|++..++-+ -++|+-.+..
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp~~~ksa~vkk~mr~~~~l~g~d~d~~~lL~~Al~~A~--kRVVVKrp~~ 222 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLAT--KRVVVKRPDY 222 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCCCCccccchhhhHHHHHHhcCCCCChHHHHHHHHHhcC--ceEEEecCCC
Confidence 8553 212347999998544433 1233456676666655 3566655433
No 270
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.95 E-value=0.0018 Score=55.08 Aligned_cols=96 Identities=22% Similarity=0.292 Sum_probs=69.7
Q ss_pred CCeEEEEcCCccHHHHHHHHhCC---------CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----
Q 021975 167 GGLLVDVSCGSGLFSRKFAKSGT---------YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----- 232 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~---------~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----- 232 (304)
-.+++|+.+..|.|+..|.++.. ...++++|+.+-+ .-+++..+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------------PI~GV~qlq~DIT~~stae~I 107 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------------PIEGVIQLQGDITSASTAEAI 107 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------------ccCceEEeecccCCHhHHHHH
Confidence 35799999999999999988631 1239999986532 4578999999997742
Q ss_pred ---CCCCccceEEecch-----hccCCCH------HHHHHHHHHhcccCcEEEEEEeC
Q 021975 233 ---FASGFVDAVHAGAA-----LHCWPSP------SNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 233 ---~~~~~fD~V~~~~v-----l~h~~d~------~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
|.....|+|+|.+. ||.+.+- ..+|.-...+|||||.|+.--+.
T Consensus 108 i~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifR 165 (294)
T KOG1099|consen 108 IEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFR 165 (294)
T ss_pred HHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhc
Confidence 55668999999654 4443322 14566678899999999875544
No 271
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.85 E-value=0.0093 Score=53.06 Aligned_cols=87 Identities=17% Similarity=0.282 Sum_probs=69.9
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (304)
Q Consensus 154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (304)
+.....+.+...+++..+|.--|.|..+..+.+.++ .++++|+|-++.+++.|++.+...+ .++.++++.+.++.
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~----~r~~~v~~~F~~l~ 86 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD----GRVTLVHGNFANLA 86 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC----CcEEEEeCcHHHHH
Confidence 334455667777889999999999999999999865 4579999999999999999998765 78999999886653
Q ss_pred -----CCCCccceEEec
Q 021975 233 -----FASGFVDAVHAG 244 (304)
Q Consensus 233 -----~~~~~fD~V~~~ 244 (304)
...+.+|.|+..
T Consensus 87 ~~l~~~~i~~vDGiL~D 103 (314)
T COG0275 87 EALKELGIGKVDGILLD 103 (314)
T ss_pred HHHHhcCCCceeEEEEe
Confidence 224578888763
No 272
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.78 E-value=0.023 Score=48.07 Aligned_cols=121 Identities=21% Similarity=0.205 Sum_probs=69.3
Q ss_pred HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHhcC-------------------
Q 021975 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDN------------------- 214 (304)
Q Consensus 156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~giD~s~~~~~~a~~~~~~~~------------------- 214 (304)
+.-..++....+-++.|-.||.|+++..+.-.. .-..|+|.|+++++++.|++++....
T Consensus 41 qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~ 120 (246)
T PF11599_consen 41 QRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYG 120 (246)
T ss_dssp HHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcC
Confidence 333344444456689999999999877665432 13489999999999999999884221
Q ss_pred --------------------ccCCCCeEEEEccCCC------CCCCCCccceEEecchhcc---CCC-----H-HHHHHH
Q 021975 215 --------------------TILTSNLALVRADVCR------LPFASGFVDAVHAGAALHC---WPS-----P-SNAVAE 259 (304)
Q Consensus 215 --------------------~~~~~~i~~~~~d~~~------lp~~~~~fD~V~~~~vl~h---~~d-----~-~~~l~~ 259 (304)
.-......+.++|+.+ ++. ....|+|+..--.-+ |.. | ..+|..
T Consensus 121 kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~-~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~ 199 (246)
T PF11599_consen 121 KPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDA-GFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNS 199 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHT-T---SEEEEE--CCCSSSTTS---HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhcc-CCCCCEEEecCCCcccccccCCCCCCcHHHHHHH
Confidence 0023346788888877 221 234699988543333 332 1 368999
Q ss_pred HHHhcccCcEEEEEEeCC
Q 021975 260 ISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 260 ~~r~LkpgG~lvi~~~~~ 277 (304)
++.+|-.++++.+++-.+
T Consensus 200 l~~vLp~~sVV~v~~k~~ 217 (246)
T PF11599_consen 200 LAPVLPERSVVAVSDKGR 217 (246)
T ss_dssp HHCCS-TT-EEEEEESSS
T ss_pred HHhhCCCCcEEEEecCCc
Confidence 999996566666654433
No 273
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.68 E-value=0.02 Score=49.91 Aligned_cols=111 Identities=16% Similarity=0.067 Sum_probs=72.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcc---CCCCeEEEEccCCC---CCCCCCc-c
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---LTSNLALVRADVCR---LPFASGF-V 238 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~---~~~~i~~~~~d~~~---lp~~~~~-f 238 (304)
....||++|.|+|..+..++... ..+|+-.|+.. .+.....+....+.. ....+.+...+-.. ..+.... |
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 35679999999997777777753 34888888644 333333332221110 11233333333222 1122233 9
Q ss_pred ceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975 239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
|+|++..++.+-..+..++.-++..|..+|++++.++.+.
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 9999999999888888899999999999998888888774
No 274
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.65 E-value=0.087 Score=45.60 Aligned_cols=105 Identities=16% Similarity=0.148 Sum_probs=61.3
Q ss_pred cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-CCC-CCCccceEE
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF-ASGFVDAVH 242 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~-~~~~fD~V~ 242 (304)
..+++||=+|=.. ..+.+++..+...+++.+|+++..+++.++..+..+ -.++.+..|+.+ +|- -.++||+++
T Consensus 43 L~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g----l~i~~~~~DlR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 43 LEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEG----LPIEAVHYDLRDPLPEELRGKFDVFF 117 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTTSS-BSEEE
T ss_pred ccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC----CceEEEEecccccCCHHHhcCCCEEE
Confidence 3578999999443 334445555556799999999999999999999887 349999999965 331 147999999
Q ss_pred ecc--hhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 243 AGA--ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 243 ~~~--vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
..- .++ -..-+++.....||..|......+..
T Consensus 118 TDPPyT~~---G~~LFlsRgi~~Lk~~g~~gy~~~~~ 151 (243)
T PF01861_consen 118 TDPPYTPE---GLKLFLSRGIEALKGEGCAGYFGFTH 151 (243)
T ss_dssp E---SSHH---HHHHHHHHHHHTB-STT-EEEEEE-T
T ss_pred eCCCCCHH---HHHHHHHHHHHHhCCCCceEEEEEec
Confidence 832 111 11357888889999877444444444
No 275
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.55 E-value=0.012 Score=53.28 Aligned_cols=112 Identities=15% Similarity=0.065 Sum_probs=71.9
Q ss_pred cccCCCeEEEEcCCccHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC----CCCCCCCCc
Q 021975 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV----CRLPFASGF 237 (304)
Q Consensus 163 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~----~~lp~~~~~ 237 (304)
..-...+|||+|.|.|.-+.++....|+ ..++-++.|+..-+.......... .....+-..|+ ..+|. ...
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~---t~~td~r~s~vt~dRl~lp~-ad~ 185 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS---TEKTDWRASDVTEDRLSLPA-ADL 185 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc---cccCCCCCCccchhccCCCc-cce
Confidence 3345668999999999998888877663 367778888876655554332221 12222222333 23332 345
Q ss_pred cceEEecchhccCCCHH---HHHHHHHHhcccCcEEEEEEeCCC
Q 021975 238 VDAVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 238 fD~V~~~~vl~h~~d~~---~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
|++|+..+-|-|..++. ..++.+..++.|||.|++++.+.+
T Consensus 186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 77776665554444332 478999999999999999998764
No 276
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.53 E-value=0.013 Score=54.46 Aligned_cols=112 Identities=16% Similarity=0.166 Sum_probs=66.3
Q ss_pred CCeEEEEcCCccHHHHHHHH--------h-------CCCCeEEEEeCCHHHHHHHHHHHHhcC---------cc-CCCC-
Q 021975 167 GGLLVDVSCGSGLFSRKFAK--------S-------GTYSGVVALDFSENMLRQCYDFIKQDN---------TI-LTSN- 220 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~--------~-------~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~-~~~~- 220 (304)
..+|+|+|||+|.++..+.. + .|..+|+.-|.-.+--...-+.+.... +. ...+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 56899999999977644421 1 124577777754322111111111100 00 0001
Q ss_pred --eEEEEccCCCCCCCCCccceEEecchhccCCCH--------------------------------------HHHHHHH
Q 021975 221 --LALVRADVCRLPFASGFVDAVHAGAALHCWPSP--------------------------------------SNAVAEI 260 (304)
Q Consensus 221 --i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--------------------------------------~~~l~~~ 260 (304)
+.-+.+.+..--||.++.+++++...||++... ..+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 223334554445889999999999999887631 1234444
Q ss_pred HHhcccCcEEEEEEeCCC
Q 021975 261 SRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 261 ~r~LkpgG~lvi~~~~~~ 278 (304)
.+-|+|||+++++..++.
T Consensus 224 a~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHhccCcEEEEEEecCC
Confidence 667999999999998885
No 277
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.42 E-value=0.0037 Score=46.88 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=28.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCC
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS 199 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s 199 (304)
+....+|||||+|.+..-|...|. .-+|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy--~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY--PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC--Cccccccc
Confidence 455799999999999999999988 89999974
No 278
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.39 E-value=0.042 Score=53.12 Aligned_cols=100 Identities=22% Similarity=0.223 Sum_probs=68.2
Q ss_pred cCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-----------CC
Q 021975 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-----------LP 232 (304)
Q Consensus 165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-----------lp 232 (304)
.++.+|+-+|+|. |......++.. +.+|+++|.+++.++.+++. +.+++..+..+ +.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl----------GA~~v~i~~~e~~~~~~gya~~~s 231 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM----------GAEFLELDFEEEGGSGDGYAKVMS 231 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCeEEEeccccccccccchhhhcc
Confidence 4688999999997 66666666653 34899999999999988872 22322211111 00
Q ss_pred ----------CCC--CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 233 ----------FAS--GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 233 ----------~~~--~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
+.+ ..+|+|+.......-+.|..+.+++.+.+||||+++....
T Consensus 232 ~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 232 EEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred hhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 3689999877654444565556999999999999887665
No 279
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.22 E-value=0.038 Score=50.44 Aligned_cols=97 Identities=21% Similarity=0.260 Sum_probs=66.9
Q ss_pred cccCCCeEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc-cCCCCCCCCCccce
Q 021975 163 KSAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVDA 240 (304)
Q Consensus 163 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD~ 240 (304)
...++.+|+=+|+| -|....++++.. ..+|+++|.+++-.+.|++.- .. .++.. |.....--.+.||+
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lG--------Ad-~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLG--------AD-HVINSSDSDALEAVKEIADA 232 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhC--------Cc-EEEEcCCchhhHHhHhhCcE
Confidence 34578899999988 345677777753 259999999999999998832 22 23332 22222111224999
Q ss_pred EEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
|+..-. ...+....+.||+||++++.-..
T Consensus 233 ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 233 IIDTVG-------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEECCC-------hhhHHHHHHHHhcCCEEEEECCC
Confidence 988653 44688899999999999998766
No 280
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.20 E-value=0.022 Score=49.25 Aligned_cols=117 Identities=17% Similarity=0.107 Sum_probs=64.4
Q ss_pred HHHHhhcccCC--CeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccC------CCCeEEEEccC
Q 021975 157 MAQEYFKSAQG--GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL------TSNLALVRADV 228 (304)
Q Consensus 157 ~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~------~~~i~~~~~d~ 228 (304)
.+.+.....++ .+|||.-+|-|..+..++..|. +|+++|-|+-+....++-++...... ..+++++.+|.
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~--~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC--KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC--eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 34444543333 4899999999999998888776 99999999976655554432211001 14799999998
Q ss_pred CC-CCCCCCccceEEecchhccCC--------------------CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 229 CR-LPFASGFVDAVHAGAALHCWP--------------------SPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 229 ~~-lp~~~~~fD~V~~~~vl~h~~--------------------d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
.+ +..++.+||+|.+.-.+.|-. +..++|++..++-+ -++|+-.+..
T Consensus 142 ~~~L~~~~~s~DVVY~DPMFp~~~ksa~vkk~m~~lr~L~~~d~~~~ell~~Alr~Ar--~RVVvKrp~~ 209 (234)
T PF04445_consen 142 LEYLRQPDNSFDVVYFDPMFPERKKSALVKKEMRVLRDLAGHDPDAEELLEEALRVAR--KRVVVKRPRK 209 (234)
T ss_dssp CCHCCCHSS--SEEEE--S-----TTTT-SHHHHHHHHHHSHHTTGGGGHHHHHHH-S--SEEEEEEETT
T ss_pred HHHHhhcCCCCCEEEECCCCCCcccccccccchHHHHHhhccCcCHHHHHHHHHHhcC--cEEEEecCCC
Confidence 76 445578999999966655521 11234555555554 4777776554
No 281
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.05 E-value=0.096 Score=48.94 Aligned_cols=105 Identities=17% Similarity=0.208 Sum_probs=69.4
Q ss_pred hcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-C-----CC-
Q 021975 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-----PF- 233 (304)
Q Consensus 162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-l-----p~- 233 (304)
....++.+||.+|||. |..+..+++.....+++++|.+++..+.+++.. ...++...-.+ . .+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---------~~~vi~~~~~~~~~~~l~~~~ 250 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---------GAETINFEEVDDVVEALRELT 250 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---------CcEEEcCCcchHHHHHHHHHc
Confidence 3445678999999988 888888888753336999999999988888731 12222211110 0 11
Q ss_pred CCCccceEEecch-----------hccC----CCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 234 ASGFVDAVHAGAA-----------LHCW----PSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 234 ~~~~fD~V~~~~v-----------l~h~----~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
....+|+|+..-. +.|. .++...+.++.+.|+++|.+++...
T Consensus 251 ~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 251 GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 2236898877421 1122 4556789999999999999988754
No 282
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=96.04 E-value=0.0054 Score=49.46 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=38.1
Q ss_pred CCccceEEecchhccCC-----CH------HHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975 235 SGFVDAVHAGAALHCWP-----SP------SNAVAEISRILRSGGVFVGTTFLRYT 279 (304)
Q Consensus 235 ~~~fD~V~~~~vl~h~~-----d~------~~~l~~~~r~LkpgG~lvi~~~~~~~ 279 (304)
.++||++.+.+++||+. || .+.+.++.++||+||.|++..+...+
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 46899999999999974 33 26789999999999999999998753
No 283
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.81 E-value=0.068 Score=49.05 Aligned_cols=111 Identities=21% Similarity=0.100 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHh--------C--------CCCeEEEEeCCHH-HHHHHHH------HHHhcCccCCCCeE
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKS--------G--------TYSGVVALDFSEN-MLRQCYD------FIKQDNTILTSNLA 222 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~--------~--------~~~~v~giD~s~~-~~~~a~~------~~~~~~~~~~~~i~ 222 (304)
..-+|+|+||..|..+..+... . +..+|+--|.-.+ .-...+. .....+ .--+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~---~~f~~ 92 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFR---NYFVS 92 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTT---SEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCc---eEEEE
Confidence 4568999999999987665431 1 1247888885322 1111111 111111 12244
Q ss_pred EEEccCCCCCCCCCccceEEecchhccCCCH------------------------H---------------HHHHHHHHh
Q 021975 223 LVRADVCRLPFASGFVDAVHAGAALHCWPSP------------------------S---------------NAVAEISRI 263 (304)
Q Consensus 223 ~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~------------------------~---------------~~l~~~~r~ 263 (304)
-+.+.+..--||+++.|++++...||++... . .+|+.=++-
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 5567776656889999999999999887521 1 234445668
Q ss_pred cccCcEEEEEEeCCCC
Q 021975 264 LRSGGVFVGTTFLRYT 279 (304)
Q Consensus 264 LkpgG~lvi~~~~~~~ 279 (304)
|+|||++++...++..
T Consensus 173 Lv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 173 LVPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEEE-ST
T ss_pred eccCcEEEEEEeeccc
Confidence 9999999999988854
No 284
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.74 E-value=0.05 Score=50.74 Aligned_cols=102 Identities=17% Similarity=0.193 Sum_probs=75.2
Q ss_pred CCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCC-CeEEEEccCCCCC-CCCCccceEEe
Q 021975 167 GGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTS-NLALVRADVCRLP-FASGFVDAVHA 243 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~-~i~~~~~d~~~lp-~~~~~fD~V~~ 243 (304)
..+|||.=+|+|-=+..++.. ....+|+.-|+|+++++..+++++.++. .. .+.+...|+..+- .....||+|=.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~--~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL--EDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT---SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc--cCceEEEehhhHHHHhhhccccCCEEEe
Confidence 458999999999876666665 3346999999999999999999999984 44 6888888886542 24678999976
Q ss_pred cchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 244 GAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 244 ~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
. -+..|..+|+.+.+.+|.||.|.++.
T Consensus 128 D----PfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 D----PFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ------SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred C----CCCCccHhHHHHHHHhhcCCEEEEec
Confidence 3 23467889999999999999988865
No 285
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.72 E-value=0.13 Score=47.51 Aligned_cols=99 Identities=24% Similarity=0.215 Sum_probs=68.6
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC-C-----CCCCC-Cc
Q 021975 166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-R-----LPFAS-GF 237 (304)
Q Consensus 166 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~-~-----lp~~~-~~ 237 (304)
++.+|+-+|||+ |.++..+++.....+++.+|.++.-++.|++.... ..+..... + ..... ..
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~---------~~~~~~~~~~~~~~~~~~t~g~g 238 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA---------DVVVNPSEDDAGAEILELTGGRG 238 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC---------eEeecCccccHHHHHHHHhCCCC
Confidence 445999999997 87777777775567999999999999999884322 11111111 1 01112 36
Q ss_pred cceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975 238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT 279 (304)
Q Consensus 238 fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~~ 279 (304)
+|+++-.-. -..++..+.+++++||.+++.......
T Consensus 239 ~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 239 ADVVIEAVG------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred CCEEEECCC------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 898886543 234789999999999999887766533
No 286
>PRK11524 putative methyltransferase; Provisional
Probab=95.68 E-value=0.048 Score=48.89 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=48.0
Q ss_pred cHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh
Q 021975 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ 212 (304)
Q Consensus 151 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~ 212 (304)
+.++.+.+..... .++..|||.=||+|..+.+..+.+- +++|+|++++.++.|++++..
T Consensus 194 P~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR--~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 194 PEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGR--KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred hHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHh
Confidence 3455555554433 4688999999999999998888876 999999999999999998754
No 287
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.67 E-value=0.032 Score=49.50 Aligned_cols=105 Identities=13% Similarity=0.190 Sum_probs=79.7
Q ss_pred cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-ccCCCCeEEEEccCCCC--CCCCCccceE
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL--PFASGFVDAV 241 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~l--p~~~~~fD~V 241 (304)
.+.+++|-||.|.|.+++...++-.-.++.-+|++...++..++.+.... -+..+++.+.-+|...+ ....++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 35679999999999999988887434588999999999999988775422 12457788888887443 1347899999
Q ss_pred EecchhccCCCH---------HHHHHHHHHhcccCcEEEEEE
Q 021975 242 HAGAALHCWPSP---------SNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 242 ~~~~vl~h~~d~---------~~~l~~~~r~LkpgG~lvi~~ 274 (304)
+.-- .|| ..++.-+.+.||+||+++...
T Consensus 200 i~ds-----sdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 200 ITDS-----SDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEec-----CCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 8732 233 257888999999999988754
No 288
>PRK00420 hypothetical protein; Validated
Probab=95.66 E-value=0.0066 Score=46.10 Aligned_cols=32 Identities=28% Similarity=0.501 Sum_probs=24.9
Q ss_pred eeeccCCCccccccCCCCccccccccCceeeCCCCccccCCC
Q 021975 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (304)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~ 101 (304)
.-.||+||.++..... +...|+.||..+...+
T Consensus 23 ~~~CP~Cg~pLf~lk~----------g~~~Cp~Cg~~~~v~~ 54 (112)
T PRK00420 23 SKHCPVCGLPLFELKD----------GEVVCPVHGKVYIVKS 54 (112)
T ss_pred cCCCCCCCCcceecCC----------CceECCCCCCeeeecc
Confidence 3689999999987332 7899999998775543
No 289
>PHA01634 hypothetical protein
Probab=95.58 E-value=0.089 Score=40.86 Aligned_cols=48 Identities=19% Similarity=0.098 Sum_probs=42.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN 214 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~ 214 (304)
.+++|+|||.+.|..+..++-+|. ..|+++|+++...+..+++++.+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhhhe
Confidence 578999999999999999999884 699999999999999999876543
No 290
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.54 E-value=0.036 Score=48.72 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=35.7
Q ss_pred CCeEEEEcCCccHHHHHHHHhCC--------CCeEEEEeCCHHHHHHHHHHHHh
Q 021975 167 GGLLVDVSCGSGLFSRKFAKSGT--------YSGVVALDFSENMLRQCYDFIKQ 212 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~giD~s~~~~~~a~~~~~~ 212 (304)
..+|+|+|+|+|.++..+.+... ..+++-+|+|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 46899999999999888776421 35899999999999888888765
No 291
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.53 E-value=0.16 Score=46.58 Aligned_cols=101 Identities=17% Similarity=0.233 Sum_probs=77.9
Q ss_pred CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC-CCccceEEecc
Q 021975 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGA 245 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~ 245 (304)
..+|||.=+|+|-=+..++...+..+++.-|+||.+++.++++++.+. ..+...+..|+..+-.. ...||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~---~~~~~v~n~DAN~lm~~~~~~fd~IDi-- 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS---GEDAEVINKDANALLHELHRAFDVIDI-- 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC---cccceeecchHHHHHHhcCCCccEEec--
Confidence 679999999999888777777655589999999999999999998873 24556666676544221 367887754
Q ss_pred hhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 246 ALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 246 vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
.-+..|..+++...+.++.||+|-++-
T Consensus 128 --DPFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 128 --DPFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred --CCCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 233467789999999999999887754
No 292
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.51 E-value=0.16 Score=45.79 Aligned_cols=102 Identities=19% Similarity=0.162 Sum_probs=70.1
Q ss_pred ccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC--CCC------CCC
Q 021975 164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRL------PFA 234 (304)
Q Consensus 164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~l------p~~ 234 (304)
...+.+||-+|+|+ |..+...++...-.+|+.+|+++..++.|++ +.. ..+....... ..+ -+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga------~~~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA------TVTDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC------eEEeeccccccHHHHHHHHHhhcc
Confidence 35688999999997 7777777777546799999999999999998 321 1122211111 000 122
Q ss_pred CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
...+|+.+..-.+ +..++.....+|.||+++++.+...
T Consensus 240 ~~~~d~~~dCsG~------~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 240 KKQPDVTFDCSGA------EVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred ccCCCeEEEccCc------hHHHHHHHHHhccCCEEEEeccCCC
Confidence 3458888765433 3457778889999999999988774
No 293
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.50 E-value=0.054 Score=46.13 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=42.3
Q ss_pred CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 021975 149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD 208 (304)
Q Consensus 149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~ 208 (304)
..+.++.+.+..... .++..|||.=||+|..+.+..+.+- +.+|+|+++..++.|++
T Consensus 175 ~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R--~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 175 QKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGR--RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCC--eEEEEeCCHHHHHHhcC
Confidence 345566666665544 3588999999999999999998887 99999999999998864
No 294
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=95.39 E-value=0.0086 Score=36.09 Aligned_cols=35 Identities=20% Similarity=0.533 Sum_probs=24.0
Q ss_pred eeeccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 021975 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (304)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 98 (304)
.+.||.|+..+...+.. + + .....++|+.|++.|.
T Consensus 2 ~i~CP~C~~~f~v~~~~-l--~-~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDK-L--P-AGGRKVRCPKCGHVFR 36 (37)
T ss_pred EEECCCCCceEEcCHHH-c--c-cCCcEEECCCCCcEee
Confidence 57899999987664321 1 0 1125899999999874
No 295
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=95.36 E-value=0.0095 Score=35.09 Aligned_cols=30 Identities=37% Similarity=0.723 Sum_probs=16.0
Q ss_pred eccCCCccccccCCCCccccccccCceeeCCCCcc
Q 021975 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (304)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 96 (304)
-||.||+++....+.+.+ ...+.|+.||.+
T Consensus 2 fC~~CG~~l~~~ip~gd~-----r~R~vC~~Cg~I 31 (34)
T PF14803_consen 2 FCPQCGGPLERRIPEGDD-----RERLVCPACGFI 31 (34)
T ss_dssp B-TTT--B-EEE--TT-S-----S-EEEETTTTEE
T ss_pred ccccccChhhhhcCCCCC-----ccceECCCCCCE
Confidence 399999998775543221 257899999875
No 296
>PRK13699 putative methylase; Provisional
Probab=95.31 E-value=0.098 Score=45.28 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=49.6
Q ss_pred CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc
Q 021975 149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD 213 (304)
Q Consensus 149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~ 213 (304)
..+.++.+.+..... .++..|||.=||+|..+.+..+.+- +++|+|+++...+.+.++++..
T Consensus 147 ~kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r--~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 147 EKPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGR--RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHHH
Confidence 345556665554443 3688999999999999999888876 9999999999999999988653
No 297
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.26 E-value=0.085 Score=50.38 Aligned_cols=107 Identities=9% Similarity=0.189 Sum_probs=77.8
Q ss_pred CCeEEEEcCCccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEE
Q 021975 167 GGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~ 242 (304)
..+|+-+|+|-|.+.....+. ....+++++|-+|.++...+.+ .... ...+++++..|+..++-+..+.|+++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~--W~~~Vtii~~DMR~w~ap~eq~DI~V 444 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFEC--WDNRVTIISSDMRKWNAPREQADIIV 444 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhh--hcCeeEEEeccccccCCchhhccchH
Confidence 346889999999887655443 2245899999999998887662 2222 45789999999999885557889888
Q ss_pred ecchhccCCCH---HHHHHHHHHhcccCcEEEEEEeCC
Q 021975 243 AGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 243 ~~~vl~h~~d~---~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+- .|..+.|- .+-|..+.+.|||+|+.+=..+.+
T Consensus 445 SE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYtS 481 (649)
T KOG0822|consen 445 SE-LLGSFGDNELSPECLDGAQKFLKPDGISIPSSYTS 481 (649)
T ss_pred HH-hhccccCccCCHHHHHHHHhhcCCCceEccchhhh
Confidence 62 23333332 367999999999999887666555
No 298
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.25 E-value=0.085 Score=45.48 Aligned_cols=105 Identities=21% Similarity=0.293 Sum_probs=70.7
Q ss_pred cccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---CCCCcc
Q 021975 163 KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFV 238 (304)
Q Consensus 163 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~f 238 (304)
...++.+||-+|+++|....+...- +|..-|+++|+|+..=+....-.+ . -.|+.-+.-|+.... ..-.-+
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk-k----RtNiiPIiEDArhP~KYRmlVgmV 227 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK-K----RTNIIPIIEDARHPAKYRMLVGMV 227 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh-c----cCCceeeeccCCCchheeeeeeeE
Confidence 4567999999999999999888887 888899999999854333222111 1 256766777775421 112356
Q ss_pred ceEEecchhccCCCHH--H-HHHHHHHhcccCcEEEEEEeCC
Q 021975 239 DAVHAGAALHCWPSPS--N-AVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 239 D~V~~~~vl~h~~d~~--~-~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
|+|++. ++.|+ . +.-+....||+||.++++.-..
T Consensus 228 DvIFaD-----vaqpdq~RivaLNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 228 DVIFAD-----VAQPDQARIVALNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred EEEecc-----CCCchhhhhhhhhhhhhhccCCeEEEEEecc
Confidence 777763 33343 2 3446677999999999977554
No 299
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.24 E-value=0.63 Score=40.49 Aligned_cols=111 Identities=21% Similarity=0.241 Sum_probs=73.6
Q ss_pred cCCCeEEEEcCCccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-CC-CCCCcc
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-FASGFV 238 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-~~~~~f 238 (304)
..+.+.+|+|.|+..-++.|.+. +.-..++.+|+|...++...+.+...- ..-.+.-+++|.+. +. .+...-
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y--~~l~v~~l~~~~~~~La~~~~~~~ 154 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREY--PGLEVNALCGDYELALAELPRGGR 154 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhC--CCCeEeehhhhHHHHHhcccCCCe
Confidence 34678999999998877666654 334689999999998887666555433 34556667777643 11 122222
Q ss_pred c-eEEecchhccCC-CH-HHHHHHHHHhcccCcEEEEEEeCC
Q 021975 239 D-AVHAGAALHCWP-SP-SNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 239 D-~V~~~~vl~h~~-d~-~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
- .++..-.|..+. ++ ..++..+...|+||-.+++.+-..
T Consensus 155 Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~ 196 (321)
T COG4301 155 RLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLR 196 (321)
T ss_pred EEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecccc
Confidence 2 333445566653 22 468999999999999988765443
No 300
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=95.15 E-value=0.027 Score=36.90 Aligned_cols=31 Identities=23% Similarity=0.582 Sum_probs=23.0
Q ss_pred eeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
++.||.|+..+..... .. ...+.|+.||..+
T Consensus 2 ~~~CP~CG~~iev~~~------~~-GeiV~Cp~CGael 32 (54)
T TIGR01206 2 QFECPDCGAEIELENP------EL-GELVICDECGAEL 32 (54)
T ss_pred ccCCCCCCCEEecCCC------cc-CCEEeCCCCCCEE
Confidence 4789999998866332 11 3467999999987
No 301
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=94.84 E-value=0.015 Score=45.23 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=24.0
Q ss_pred cCCeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
.|-...||.||.||.... |.+.|+.|++..
T Consensus 25 kML~~hCp~Cg~PLF~Kd-----------G~v~CPvC~~~~ 54 (131)
T COG1645 25 KMLAKHCPKCGTPLFRKD-----------GEVFCPVCGYRE 54 (131)
T ss_pred HHHHhhCcccCCcceeeC-----------CeEECCCCCceE
Confidence 344567999999998844 899999999643
No 302
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=94.81 E-value=0.017 Score=31.79 Aligned_cols=24 Identities=25% Similarity=0.647 Sum_probs=19.3
Q ss_pred eccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 021975 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (304)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 98 (304)
.||.|+..... ..-.|+.||+.|.
T Consensus 2 ~CP~C~~~V~~-------------~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 2 TCPECGAEVPE-------------SAKFCPHCGYDFE 25 (26)
T ss_pred cCCCCcCCchh-------------hcCcCCCCCCCCc
Confidence 59999998755 4678999998773
No 303
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=94.80 E-value=0.029 Score=35.55 Aligned_cols=31 Identities=16% Similarity=0.386 Sum_probs=23.5
Q ss_pred CCeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
|..+.||.||..+...... ..++|+.||...
T Consensus 1 ~~~y~C~~CG~~~~~~~~~---------~~~~Cp~CG~~~ 31 (46)
T PRK00398 1 MAEYKCARCGREVELDEYG---------TGVRCPYCGYRI 31 (46)
T ss_pred CCEEECCCCCCEEEECCCC---------CceECCCCCCeE
Confidence 3568999999988765421 378999999765
No 304
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.76 E-value=0.13 Score=44.17 Aligned_cols=98 Identities=15% Similarity=0.171 Sum_probs=62.5
Q ss_pred CCcHHHHHHHHHhhcc------cCCCeEEEEcCCccHH--HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCC
Q 021975 149 PGPDEEFKMAQEYFKS------AQGGLLVDVSCGSGLF--SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN 220 (304)
Q Consensus 149 ~~~~~~~~~l~~~l~~------~~~~~vLDiGcG~G~~--~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~ 220 (304)
|+....+.++.+++.. .++.++||||.|.-.. +.-..+.++ +++|.|+++..++.|+..+..+.. ....
T Consensus 55 PgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgw--rfvGseid~~sl~sA~~ii~~N~~-l~~~ 131 (292)
T COG3129 55 PGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGW--RFVGSEIDSQSLSSAKAIISANPG-LERA 131 (292)
T ss_pred CChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecc--eeecCccCHHHHHHHHHHHHcCcc-hhhh
Confidence 4444555566666543 2456799999887543 222334455 999999999999999999987721 2334
Q ss_pred eEEEEccCCCC-----CCCCCccceEEecchhcc
Q 021975 221 LALVRADVCRL-----PFASGFVDAVHAGAALHC 249 (304)
Q Consensus 221 i~~~~~d~~~l-----p~~~~~fD~V~~~~vl~h 249 (304)
+++....-.+- --.++.||+++|+--+|.
T Consensus 132 I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 132 IRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred eeEEeccCccccccccccccceeeeEecCCCcch
Confidence 44443322221 122678999999876664
No 305
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=94.70 E-value=0.04 Score=48.64 Aligned_cols=108 Identities=15% Similarity=0.109 Sum_probs=65.7
Q ss_pred cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH---------hcCccCCCCeEEEEccCCCCC-CC
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK---------QDNTILTSNLALVRADVCRLP-FA 234 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~---------~~~~~~~~~i~~~~~d~~~lp-~~ 234 (304)
..+++|||+|||.|.-.......+ ...++-.|++...++.-.--.. ... ...-..+...+..+.- ..
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e--~~~~~~i~~s~l~dg~~~~ 191 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKE--NHKVDEILNSLLSDGVFNH 191 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc-cceeeeEecchhheeeecccceecchhhhhhhhh--cccceeccccccccchhhh
Confidence 357899999999999888888776 2588888888877632111000 000 0011112222111111 11
Q ss_pred CC--ccceEEecchhccCCCHHHH-HHHHHHhcccCcEEEEEEe
Q 021975 235 SG--FVDAVHAGAALHCWPSPSNA-VAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 235 ~~--~fD~V~~~~vl~h~~d~~~~-l~~~~r~LkpgG~lvi~~~ 275 (304)
.+ .||+|.+...+........+ .-....+++++|+++++.-
T Consensus 192 t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK 235 (282)
T KOG2920|consen 192 TERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAAK 235 (282)
T ss_pred ccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhhH
Confidence 23 78999998888777666655 6667778899998877653
No 306
>PHA00626 hypothetical protein
Probab=94.62 E-value=0.022 Score=37.06 Aligned_cols=33 Identities=27% Similarity=0.485 Sum_probs=20.8
Q ss_pred eeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
+.||.||+.....-.. -...++.+.|+.||..|
T Consensus 1 m~CP~CGS~~Ivrcg~----cr~~snrYkCkdCGY~f 33 (59)
T PHA00626 1 MSCPKCGSGNIAKEKT----MRGWSDDYVCCDCGYND 33 (59)
T ss_pred CCCCCCCCceeeeece----ecccCcceEcCCCCCee
Confidence 3699999964332100 00113789999999887
No 307
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.59 E-value=0.44 Score=43.63 Aligned_cols=96 Identities=20% Similarity=0.274 Sum_probs=60.1
Q ss_pred cCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEE---ccCCCCCCCCCccce
Q 021975 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR---ADVCRLPFASGFVDA 240 (304)
Q Consensus 165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~---~d~~~lp~~~~~fD~ 240 (304)
.++.+||-+|+|. |.++..+++.....+++++|.+++.++.+++. + .. .++. .++.......+.+|+
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----G----a~-~vi~~~~~~~~~~~~~~g~~D~ 238 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----G----AD-KLVNPQNDDLDHYKAEKGYFDV 238 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----C----Cc-EEecCCcccHHHHhccCCCCCE
Confidence 3577899899864 56666667664223799999999988888762 1 11 1111 111111111235888
Q ss_pred EEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
|+..- ..+ ..++...+.|++||++++...
T Consensus 239 vid~~-----G~~-~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 239 SFEVS-----GHP-SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred EEECC-----CCH-HHHHHHHHHhhcCCEEEEEcc
Confidence 77542 233 357888999999999988764
No 308
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=94.51 E-value=0.045 Score=49.54 Aligned_cols=83 Identities=20% Similarity=0.202 Sum_probs=64.1
Q ss_pred HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHH-------HHHHHHHhcCccCCCCeEEEEccCCC
Q 021975 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLR-------QCYDFIKQDNTILTSNLALVRADVCR 230 (304)
Q Consensus 158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~-------~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (304)
+.+.....+|..|+|-=-|||.++...+..|. -|+|.||+-.+++ ..+.++++.+. ...-+.++.+|...
T Consensus 200 ~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa--~viGtDIDyr~vragrg~~~si~aNFkQYg~-~~~fldvl~~D~sn 276 (421)
T KOG2671|consen 200 MANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA--YVIGTDIDYRTVRAGRGEDESIKANFKQYGS-SSQFLDVLTADFSN 276 (421)
T ss_pred HhhhhccCCCCEEecCccccCceeeehhhhcc--eeeccccchheeecccCCCcchhHhHHHhCC-cchhhheeeecccC
Confidence 33444556799999999999999998888876 9999999998887 34556666663 23346788899988
Q ss_pred CCCC-CCccceEEe
Q 021975 231 LPFA-SGFVDAVHA 243 (304)
Q Consensus 231 lp~~-~~~fD~V~~ 243 (304)
-|+. ...||+|+|
T Consensus 277 ~~~rsn~~fDaIvc 290 (421)
T KOG2671|consen 277 PPLRSNLKFDAIVC 290 (421)
T ss_pred cchhhcceeeEEEe
Confidence 7744 458999999
No 309
>KOG1088 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=0.018 Score=43.43 Aligned_cols=28 Identities=7% Similarity=0.312 Sum_probs=24.6
Q ss_pred ccccCceeeCCCCccccCCCCeeeeecc
Q 021975 82 AIYRSGFKCRKCDKTYSSKDNYLDLTVI 109 (304)
Q Consensus 82 ~i~~~~l~C~~C~~~~~~~~g~~~~~~~ 109 (304)
.+.++.+.|+.||+.|++.+|+++++..
T Consensus 93 ~v~EG~l~CpetG~vfpI~~GIPNMLL~ 120 (124)
T KOG1088|consen 93 DVIEGELVCPETGRVFPISDGIPNMLLS 120 (124)
T ss_pred hhccceEecCCCCcEeecccCCcccccC
Confidence 4556899999999999999999998754
No 310
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=94.44 E-value=0.036 Score=49.20 Aligned_cols=103 Identities=18% Similarity=0.267 Sum_probs=74.8
Q ss_pred CCeEEEEcCCccHHHH-HHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975 167 GGLLVDVSCGSGLFSR-KFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~-~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (304)
+..|+|+=+|.|+|+. .+...+ ...|+++|.+|..++..++.++.++ ...+..++.+|-.. +-++...|-|....
T Consensus 195 ~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N~--V~~r~~i~~gd~R~-~~~~~~AdrVnLGL 270 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEANN--VMDRCRITEGDNRN-PKPRLRADRVNLGL 270 (351)
T ss_pred cchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhcc--hHHHHHhhhccccc-cCccccchheeecc
Confidence 5789999999999998 666666 4699999999999999999998876 55566667777554 33466777777654
Q ss_pred hhccCCCHHHHHHHHHHhcccCc--EEEEEEeCC
Q 021975 246 ALHCWPSPSNAVAEISRILRSGG--VFVGTTFLR 277 (304)
Q Consensus 246 vl~h~~d~~~~l~~~~r~LkpgG--~lvi~~~~~ 277 (304)
+|.-++-.-.+..+|||.| ++-+-....
T Consensus 271 ----lPSse~~W~~A~k~Lk~eggsilHIHenV~ 300 (351)
T KOG1227|consen 271 ----LPSSEQGWPTAIKALKPEGGSILHIHENVK 300 (351)
T ss_pred ----ccccccchHHHHHHhhhcCCcEEEEecccc
Confidence 3544555566777888854 444544443
No 311
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=94.43 E-value=0.093 Score=49.02 Aligned_cols=60 Identities=15% Similarity=0.403 Sum_probs=50.8
Q ss_pred eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (304)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (304)
.|||||.|||.++....+.|. -.|+++|.-..|...|++....++ ..++|.++.---.++
T Consensus 69 ~vLdigtGTGLLSmMAvraga-D~vtA~EvfkPM~d~arkI~~kng--~SdkI~vInkrStev 128 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGA-DSVTACEVFKPMVDLARKIMHKNG--MSDKINVINKRSTEV 128 (636)
T ss_pred EEEEccCCccHHHHHHHHhcC-CeEEeehhhchHHHHHHHHHhcCC--Cccceeeecccccee
Confidence 589999999999998888884 479999999999999999999988 678888876544443
No 312
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.35 E-value=0.68 Score=41.79 Aligned_cols=95 Identities=18% Similarity=0.213 Sum_probs=61.6
Q ss_pred ccCCCeEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC------CCCCC
Q 021975 164 SAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL------PFASG 236 (304)
Q Consensus 164 ~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l------p~~~~ 236 (304)
..++.+||..|+| .|..+..+++.. +.++++++.++...+.+++. + +..+..+-... ....+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~----g------~~~~~~~~~~~~~~~~~~~~~~ 231 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKEL----G------ADEVLNSLDDSPKDKKAAGLGG 231 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh----C------CCEEEcCCCcCHHHHHHHhcCC
Confidence 4456788888876 377777777763 34899999999888877552 1 11121111110 12345
Q ss_pred ccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
.+|+|+.... ....++++.+.|+++|.++....
T Consensus 232 ~~D~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 232 GFDVIFDFVG------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CceEEEECCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence 6898875421 13468889999999999987654
No 313
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=94.34 E-value=0.027 Score=33.71 Aligned_cols=34 Identities=18% Similarity=0.554 Sum_probs=23.0
Q ss_pred eeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
.+.||.|+......+.. +. -....++|+.|++.|
T Consensus 2 ~i~Cp~C~~~y~i~d~~-ip---~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDEK-IP---PKGRKVRCSKCGHVF 35 (36)
T ss_pred EEECCCCCCEEeCCHHH-CC---CCCcEEECCCCCCEe
Confidence 57899999987654321 11 111478999999876
No 314
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=94.25 E-value=0.031 Score=34.85 Aligned_cols=29 Identities=28% Similarity=0.592 Sum_probs=19.7
Q ss_pred eeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
+.||.|++.....+. ..+.+.|+.||.+.
T Consensus 1 m~Cp~Cg~~~~~~D~--------~~g~~vC~~CG~Vl 29 (43)
T PF08271_consen 1 MKCPNCGSKEIVFDP--------ERGELVCPNCGLVL 29 (43)
T ss_dssp ESBTTTSSSEEEEET--------TTTEEEETTT-BBE
T ss_pred CCCcCCcCCceEEcC--------CCCeEECCCCCCEe
Confidence 579999997633221 23788999999764
No 315
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.12 E-value=0.17 Score=45.17 Aligned_cols=68 Identities=19% Similarity=0.273 Sum_probs=52.2
Q ss_pred eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC--CCccceEEecch
Q 021975 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA--SGFVDAVHAGAA 246 (304)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~--~~~fD~V~~~~v 246 (304)
+++|+-||.|.+...+...| ...++++|+++.+++..+.+.. .. .+.+|+.++... ...+|+|+...-
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~--------~~-~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFP--------NK-LIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCC--------CC-CccCccccCchhhcCCCCCEEEeCCC
Confidence 68999999999999998887 3468899999999988888642 11 566777766422 356999998653
No 316
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=94.11 E-value=0.38 Score=40.18 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=73.7
Q ss_pred HHhhcccCCCeEEEEcCCccHHHHHHHH----hCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--
Q 021975 159 QEYFKSAQGGLLVDVSCGSGLFSRKFAK----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-- 232 (304)
Q Consensus 159 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-- 232 (304)
.+.+-..++..|+|+|.-.|..+..++. .|...+|+++|++-....-+.. ..+++.|+.++-.+..
T Consensus 62 Qellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~--------e~p~i~f~egss~dpai~ 133 (237)
T COG3510 62 QELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAR--------EVPDILFIEGSSTDPAIA 133 (237)
T ss_pred HHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhh--------cCCCeEEEeCCCCCHHHH
Confidence 3344445567999999999987666554 3534699999998765443332 2478999999987743
Q ss_pred -----CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 233 -----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 233 -----~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
...+.--+.++-..-||.....+.|+...++|..|-++++.+-.-
T Consensus 134 eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v 183 (237)
T COG3510 134 EQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNV 183 (237)
T ss_pred HHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccc
Confidence 112222333444444555555677888899999999998876543
No 317
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=94.07 E-value=0.032 Score=38.88 Aligned_cols=50 Identities=16% Similarity=0.440 Sum_probs=34.7
Q ss_pred eeeccCCCccccccCCCCccccccccCceeeC--CCCccccCCCCeeeeeccc
Q 021975 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCR--KCDKTYSSKDNYLDLTVIS 110 (304)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~--~C~~~~~~~~g~~~~~~~~ 110 (304)
++.||.||.......-. .-.+...+.+..|. .||+.|...+.+...+...
T Consensus 1 mm~CP~Cg~~a~irtSr-~~s~~~~~~Y~qC~N~eCg~tF~t~es~s~tis~p 52 (72)
T PRK09678 1 MFHCPLCQHAAHARTSR-YITDTTKERYHQCQNVNCSATFITYESVQRYIVKP 52 (72)
T ss_pred CccCCCCCCccEEEECh-hcChhhheeeeecCCCCCCCEEEEEEEEEEEEcCC
Confidence 47899999977443322 22233555678898 9999998887777776553
No 318
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=93.96 E-value=0.33 Score=44.47 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=39.6
Q ss_pred ccCCCeEEEEcCCccHHHHHHHHh----CC----CCeEEEEeCCHHHHHHHHHHHHhc
Q 021975 164 SAQGGLLVDVSCGSGLFSRKFAKS----GT----YSGVVALDFSENMLRQCYDFIKQD 213 (304)
Q Consensus 164 ~~~~~~vLDiGcG~G~~~~~l~~~----~~----~~~v~giD~s~~~~~~a~~~~~~~ 213 (304)
......++|||.|.|.+...+.+. .| ..++.-||+|+...+.-++.++..
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 334568999999999988777654 22 468999999999988888887754
No 319
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=93.96 E-value=0.032 Score=31.81 Aligned_cols=27 Identities=19% Similarity=0.578 Sum_probs=14.3
Q ss_pred eeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
-.||.|++.....+. ..+.|+.|++.+
T Consensus 3 p~Cp~C~se~~y~D~----------~~~vCp~C~~ew 29 (30)
T PF08274_consen 3 PKCPLCGSEYTYEDG----------ELLVCPECGHEW 29 (30)
T ss_dssp ---TTT-----EE-S----------SSEEETTTTEEE
T ss_pred CCCCCCCCcceeccC----------CEEeCCcccccC
Confidence 369999998766442 689999998754
No 320
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=93.93 E-value=0.11 Score=49.04 Aligned_cols=110 Identities=23% Similarity=0.126 Sum_probs=70.8
Q ss_pred cCCCeEEEEcCCccHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc-cC--CCCCCC-CCcc
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DV--CRLPFA-SGFV 238 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~--~~lp~~-~~~f 238 (304)
.....++|+|.|.|.-...+... .....++.||.+..|.......++... ..+-.++.. -+ ..+|.. ...|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~---~~g~~~v~~~~~~r~~~pi~~~~~y 275 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGS---HIGEPIVRKLVFHRQRLPIDIKNGY 275 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChh---hcCchhccccchhcccCCCCcccce
Confidence 34567888988877655444433 324579999999999999888775411 111111111 11 223433 4459
Q ss_pred ceEEecchhccCCCHH---HHH-HHHHHhcccCcEEEEEEeCC
Q 021975 239 DAVHAGAALHCWPSPS---NAV-AEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 239 D~V~~~~vl~h~~d~~---~~l-~~~~r~LkpgG~lvi~~~~~ 277 (304)
|+|++.+.++++.+.. ... +-..+..++||.+++...+.
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 9999999999988664 223 33455778899999988765
No 321
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=93.86 E-value=0.037 Score=39.56 Aligned_cols=31 Identities=26% Similarity=0.694 Sum_probs=23.1
Q ss_pred CeeeccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 021975 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (304)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 98 (304)
....||.|+.+-.... -.+.|.|..||..|.
T Consensus 34 ~~~~Cp~C~~~~VkR~---------a~GIW~C~kCg~~fA 64 (89)
T COG1997 34 AKHVCPFCGRTTVKRI---------ATGIWKCRKCGAKFA 64 (89)
T ss_pred cCCcCCCCCCcceeee---------ccCeEEcCCCCCeec
Confidence 4578999999843322 238999999998873
No 322
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=93.84 E-value=0.029 Score=42.68 Aligned_cols=22 Identities=32% Similarity=0.921 Sum_probs=19.2
Q ss_pred ccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 63 CPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 63 CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
||+|++++.. ..++|++|+...
T Consensus 1 CPvCg~~l~v-------------t~l~C~~C~t~i 22 (113)
T PF09862_consen 1 CPVCGGELVV-------------TRLKCPSCGTEI 22 (113)
T ss_pred CCCCCCceEE-------------EEEEcCCCCCEE
Confidence 9999999977 579999998754
No 323
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.29 E-value=0.78 Score=42.01 Aligned_cols=95 Identities=15% Similarity=0.111 Sum_probs=58.6
Q ss_pred cCCCeEEEEcCCc-cHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEE
Q 021975 165 AQGGLLVDVSCGS-GLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (304)
Q Consensus 165 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~ 242 (304)
.++.+||-+|||. |.++..++++ ....+++++|.++.-++.+++ .+ .. ....+ +. .+..+|+|+
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~-----~~-~~~~~---~~-~~~g~d~vi 227 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----AD-----ET-YLIDD---IP-EDLAVDHAF 227 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cC-----ce-eehhh---hh-hccCCcEEE
Confidence 4578999999875 5555565554 323589999999988777764 11 11 11111 11 112478887
Q ss_pred ecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
-.-. . ..-...+.+..++|++||++++....
T Consensus 228 D~~G--~-~~~~~~~~~~~~~l~~~G~iv~~G~~ 258 (341)
T cd08237 228 ECVG--G-RGSQSAINQIIDYIRPQGTIGLMGVS 258 (341)
T ss_pred ECCC--C-CccHHHHHHHHHhCcCCcEEEEEeec
Confidence 5321 0 01234688899999999999876643
No 324
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.27 E-value=0.4 Score=46.42 Aligned_cols=97 Identities=21% Similarity=0.251 Sum_probs=66.0
Q ss_pred cCCCeEEEEcCCc-cHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC------------
Q 021975 165 AQGGLLVDVSCGS-GLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR------------ 230 (304)
Q Consensus 165 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~------------ 230 (304)
.++.++|-+|+|. |.....+++. |. .|+++|.++..++.++. + ...++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA--~V~v~d~~~~rle~a~~-l---------Ga~~v~v~~~e~g~~~~gYa~~~ 229 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA--IVRAFDTRPEVKEQVQS-M---------GAEFLELDFKEEGGSGDGYAKVM 229 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH-c---------CCeEEeccccccccccccceeec
Confidence 3568999999996 5655555554 54 89999999998877776 1 22333323211
Q ss_pred -----------CCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEE
Q 021975 231 -----------LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT 273 (304)
Q Consensus 231 -----------lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~ 273 (304)
++-.-..+|+|+..-.+.--+.|.-+.+++.+.+|||++++=.
T Consensus 230 s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 230 SEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 1101246999988776666667766789999999999987643
No 325
>PRK10220 hypothetical protein; Provisional
Probab=93.23 E-value=0.07 Score=39.87 Aligned_cols=34 Identities=18% Similarity=0.520 Sum_probs=26.6
Q ss_pred CCeeeccCCCccccccCCCCccccccccCceeeCCCCccccCCC
Q 021975 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (304)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~ 101 (304)
|++-.||.|++....... ..+.|+.|+|.+...+
T Consensus 1 m~lP~CP~C~seytY~d~----------~~~vCpeC~hEW~~~~ 34 (111)
T PRK10220 1 MSLPHCPKCNSEYTYEDN----------GMYICPECAHEWNDAE 34 (111)
T ss_pred CCCCcCCCCCCcceEcCC----------CeEECCcccCcCCccc
Confidence 455789999999877553 5799999999886553
No 326
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=93.22 E-value=0.052 Score=41.13 Aligned_cols=31 Identities=19% Similarity=0.536 Sum_probs=24.5
Q ss_pred eeeccCCCccccccCCCCccccccccCceeeCCCCccccCC
Q 021975 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (304)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~ 100 (304)
.-.||.||..++-... ...+|+.||..|+..
T Consensus 9 KR~Cp~CG~kFYDLnk----------~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 9 KRTCPSCGAKFYDLNK----------DPIVCPKCGTEFPPE 39 (108)
T ss_pred cccCCCCcchhccCCC----------CCccCCCCCCccCcc
Confidence 3579999999866442 578899999999666
No 327
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=93.16 E-value=0.069 Score=30.93 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=15.7
Q ss_pred eccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
-||.||++....... ...+|+.|++.+
T Consensus 5 fC~~CG~~t~~~~~g---------~~r~C~~Cg~~~ 31 (32)
T PF09297_consen 5 FCGRCGAPTKPAPGG---------WARRCPSCGHEH 31 (32)
T ss_dssp B-TTT--BEEE-SSS---------S-EEESSSS-EE
T ss_pred ccCcCCccccCCCCc---------CEeECCCCcCEe
Confidence 599999998775532 578999998753
No 328
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=92.99 E-value=1.5 Score=44.36 Aligned_cols=106 Identities=11% Similarity=0.048 Sum_probs=60.1
Q ss_pred eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHH-HHHHHhcCccCCCCeEEEEccC---CCCCCCCCccceEEec
Q 021975 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQC-YDFIKQDNTILTSNLALVRADV---CRLPFASGFVDAVHAG 244 (304)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a-~~~~~~~~~~~~~~i~~~~~d~---~~lp~~~~~fD~V~~~ 244 (304)
.+.-.|.|+=..-..+.+.+|+..++-+|-+...-+.+ +..+.... ...+.++.+.= ....|++-+-=+|+..
T Consensus 485 ~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~---~ge~dILiGTQmiaKG~~fp~vtLVgvl~a 561 (730)
T COG1198 485 HLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFA---NGEADILIGTQMIAKGHDFPNVTLVGVLDA 561 (730)
T ss_pred eeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHh---CCCCCeeecchhhhcCCCcccceEEEEEec
Confidence 57778888888899999999999999999877553332 22222221 12333333321 2234555444455556
Q ss_pred chhccCCCHH---HHH---HHHHHhcc---cCcEEEEEEeCC
Q 021975 245 AALHCWPSPS---NAV---AEISRILR---SGGVFVGTTFLR 277 (304)
Q Consensus 245 ~vl~h~~d~~---~~l---~~~~r~Lk---pgG~lvi~~~~~ 277 (304)
...-+.+|.. +++ .++...-. ..|.+++.|+..
T Consensus 562 D~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P 603 (730)
T COG1198 562 DTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNP 603 (730)
T ss_pred hhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCC
Confidence 6666677764 222 22222221 336677777665
No 329
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=92.82 E-value=0.072 Score=34.37 Aligned_cols=33 Identities=21% Similarity=0.461 Sum_probs=22.6
Q ss_pred CCcCCeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 55 ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 55 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
.+....-.||.|++.+..... ..+.|..||..+
T Consensus 15 ~v~~~~~fCP~Cg~~~m~~~~----------~r~~C~~Cgyt~ 47 (50)
T PRK00432 15 KVKRKNKFCPRCGSGFMAEHL----------DRWHCGKCGYTE 47 (50)
T ss_pred EEEEccCcCcCCCcchheccC----------CcEECCCcCCEE
Confidence 344445589999996333221 689999999765
No 330
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=92.72 E-value=0.61 Score=35.94 Aligned_cols=86 Identities=24% Similarity=0.255 Sum_probs=59.1
Q ss_pred CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-----C-CCCCccceEEecchhcc
Q 021975 176 GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----P-FASGFVDAVHAGAALHC 249 (304)
Q Consensus 176 G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p-~~~~~fD~V~~~~vl~h 249 (304)
|.|..+..+++... .+++++|.++.-.+.+++.- . -.++..+-.++ . .....+|+|+-.-.
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~G--------a-~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g--- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELG--------A-DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG--- 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTT--------E-SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS---
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhc--------c-cccccccccccccccccccccccceEEEEecC---
Confidence 45778888888753 79999999999999888721 1 12222222211 1 22347999887532
Q ss_pred CCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 250 WPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 250 ~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
. ...++....+|+++|++++.....
T Consensus 68 --~-~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 --S-GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp --S-HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred --c-HHHHHHHHHHhccCCEEEEEEccC
Confidence 2 457999999999999999988765
No 331
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=92.64 E-value=0.055 Score=40.87 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=26.8
Q ss_pred ccceEEecchhc--cCC--C--HHHHHHHHHHhcccCcEEEEEE
Q 021975 237 FVDAVHAGAALH--CWP--S--PSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 237 ~fD~V~~~~vl~--h~~--d--~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
.||+|+|.-|.- |+. | ...+++.+...|+|||.|++--
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 489999977632 222 2 2368999999999999988854
No 332
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=92.62 E-value=0.11 Score=30.38 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=23.5
Q ss_pred CeeeccCCCccccc-cCCCCccccccccCceeeCCCCcccc
Q 021975 59 DLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYS 98 (304)
Q Consensus 59 ~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~l~C~~C~~~~~ 98 (304)
....|+.|++++.. ... ..+.|..|+..++
T Consensus 2 ~~~~C~~C~~~~i~~~~~----------~~~~C~~Cg~~~~ 32 (33)
T PF08792_consen 2 NLKKCSKCGGNGIVNKED----------DYEVCIFCGSSFP 32 (33)
T ss_pred CceEcCCCCCCeEEEecC----------CeEEcccCCcEee
Confidence 45789999998866 332 6899999998764
No 333
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=92.58 E-value=0.43 Score=43.93 Aligned_cols=43 Identities=23% Similarity=0.236 Sum_probs=35.2
Q ss_pred cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD 208 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~ 208 (304)
..-..++|+|.|.|++++.+.-.+ +..|.+||-|....+.|++
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 445689999999999999888774 4599999999877766654
No 334
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=92.54 E-value=0.055 Score=43.76 Aligned_cols=42 Identities=24% Similarity=0.494 Sum_probs=26.2
Q ss_pred cCCeeeccCCCccccccCCCCc--c----ccccccCceeeCCCCcccc
Q 021975 57 EGDLFSCPICYEPLIRKGPTGL--T----LGAIYRSGFKCRKCDKTYS 98 (304)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~--~----~~~i~~~~l~C~~C~~~~~ 98 (304)
..+.-+||.|+++|........ . .-......++|++||..|-
T Consensus 94 ~~e~~RCp~CN~~L~~vs~eev~~~Vp~~~~~~~~~f~~C~~CgkiYW 141 (165)
T COG1656 94 FPEFSRCPECNGELEKVSREEVKEKVPEKVYRNYEEFYRCPKCGKIYW 141 (165)
T ss_pred ccccccCcccCCEeccCcHHHHhhccchhhhhcccceeECCCCccccc
Confidence 3456789999999865432211 0 1112234678999999873
No 335
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=92.54 E-value=0.44 Score=42.87 Aligned_cols=110 Identities=12% Similarity=0.078 Sum_probs=75.1
Q ss_pred CCeEEEEcCCccHHHHHHHHhC--------------------CCCeEEEEeCCH--HHHHHHHHHHHhc-----------
Q 021975 167 GGLLVDVSCGSGLFSRKFAKSG--------------------TYSGVVALDFSE--NMLRQCYDFIKQD----------- 213 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~--------------------~~~~v~giD~s~--~~~~~a~~~~~~~----------- 213 (304)
..+||-||.|.|.-+.+++... +..+++.||+.+ ..+......+...
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3689999999987665555433 114899999876 3455555544333
Q ss_pred -Cc--cCCCCeEEEEccCCCCCCCC-------CccceEEecchhccC-----CCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 214 -NT--ILTSNLALVRADVCRLPFAS-------GFVDAVHAGAALHCW-----PSPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 214 -~~--~~~~~i~~~~~d~~~lp~~~-------~~fD~V~~~~vl~h~-----~d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
.. ....++.|.+.|+..+..++ ...|+|...+.++-+ ..-.++|..+-..++||-.|+|++-.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 00 02346789999997765321 257888888887653 34457899999999999999988743
No 336
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=92.50 E-value=0.077 Score=31.97 Aligned_cols=34 Identities=21% Similarity=0.522 Sum_probs=22.0
Q ss_pred eeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
.+.||.|+......... +. .....++|++|++.+
T Consensus 2 ~~~CP~C~~~~~v~~~~-~~---~~~~~v~C~~C~~~~ 35 (38)
T TIGR02098 2 RIQCPNCKTSFRVVDSQ-LG---ANGGKVRCGKCGHVW 35 (38)
T ss_pred EEECCCCCCEEEeCHHH-cC---CCCCEEECCCCCCEE
Confidence 47899999977553311 00 011368999999876
No 337
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=92.42 E-value=0.072 Score=31.82 Aligned_cols=28 Identities=18% Similarity=0.526 Sum_probs=21.7
Q ss_pred CeeeccCCCccccccCCCCccccccccCceeeCCCCcc
Q 021975 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (304)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 96 (304)
..+.|++|++......+ +.+.|..||+.
T Consensus 7 ~~~~C~~C~~~~~~~~d----------G~~yC~~cG~~ 34 (36)
T PF11781_consen 7 PNEPCPVCGSRWFYSDD----------GFYYCDRCGHQ 34 (36)
T ss_pred CCCcCCCCCCeEeEccC----------CEEEhhhCceE
Confidence 34679999998655443 79999999985
No 338
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=92.33 E-value=0.061 Score=28.68 Aligned_cols=22 Identities=23% Similarity=0.588 Sum_probs=16.8
Q ss_pred eccCCCccccccCCCCccccccccCceeeCCCCcc
Q 021975 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (304)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 96 (304)
.||.||.++.. +.-.|+.||+.
T Consensus 1 ~Cp~CG~~~~~-------------~~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIED-------------DAKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCC-------------cCcchhhhCCc
Confidence 39999999854 45679999863
No 339
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=92.23 E-value=0.13 Score=48.69 Aligned_cols=115 Identities=18% Similarity=0.156 Sum_probs=80.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-------CCCCCCcc
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-------LPFASGFV 238 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-------lp~~~~~f 238 (304)
.+..+|-+|-|.|.+...+....+...+++++++|.+++.|+..+.... ..+..+.-.|..+ ..-.+..|
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q---~~r~~V~i~dGl~~~~~~~k~~~~~~~~ 371 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ---SDRNKVHIADGLDFLQRTAKSQQEDICP 371 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh---hhhhhhhHhhchHHHHHHhhccccccCC
Confidence 3568899999999999999999888899999999999999999875432 1223333333211 11245689
Q ss_pred ceEEec----chhccCCCH------HHHHHHHHHhcccCcEEEEEEeCCCCCCccc
Q 021975 239 DAVHAG----AALHCWPSP------SNAVAEISRILRSGGVFVGTTFLRYTSSTSL 284 (304)
Q Consensus 239 D~V~~~----~vl~h~~d~------~~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~ 284 (304)
|++... . .|-+..| ..++..+...|.|.|.+++-...+..+..+-
T Consensus 372 dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~ 426 (482)
T KOG2352|consen 372 DVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDE 426 (482)
T ss_pred cEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHH
Confidence 988862 2 3333323 2578889999999999999888775444433
No 340
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.20 E-value=2.5 Score=38.50 Aligned_cols=94 Identities=16% Similarity=0.080 Sum_probs=59.2
Q ss_pred hcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccce
Q 021975 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 240 (304)
Q Consensus 162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 240 (304)
....++.+||-.|+|. |..+..+++.. +.++++++.+++-.+.+++. | ... ++ +..+. ..+.+|+
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~----G----a~~-vi--~~~~~--~~~~~d~ 226 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALAL----G----AAS-AG--GAYDT--PPEPLDA 226 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHh----C----Cce-ec--ccccc--CcccceE
Confidence 3445678999999763 55556666653 34899999999888777662 1 111 11 11111 1235787
Q ss_pred EEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
++.... .. ..+....+.|++||++++.-.
T Consensus 227 ~i~~~~-----~~-~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 227 AILFAP-----AG-GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EEECCC-----cH-HHHHHHHHhhCCCcEEEEEec
Confidence 654322 12 368889999999999988665
No 341
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=92.18 E-value=0.089 Score=34.31 Aligned_cols=26 Identities=23% Similarity=0.686 Sum_probs=21.6
Q ss_pred eeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
-.|++|+.++...+ ..+.|+.|+..|
T Consensus 6 ~~C~~Cg~~~~~~d-----------DiVvCp~Cgapy 31 (54)
T PF14446_consen 6 CKCPVCGKKFKDGD-----------DIVVCPECGAPY 31 (54)
T ss_pred ccChhhCCcccCCC-----------CEEECCCCCCcc
Confidence 57999999997655 589999999877
No 342
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=92.17 E-value=0.8 Score=40.50 Aligned_cols=105 Identities=15% Similarity=0.127 Sum_probs=72.1
Q ss_pred cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC---CCccceE
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAV 241 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~V 241 (304)
..++.|+-+| -.-..+.+++-.+-..++..+|+++..+....+..++.+ ..++..+.-|+.+ |++ .+.||++
T Consensus 151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g---~~~ie~~~~Dlr~-plpe~~~~kFDvf 225 (354)
T COG1568 151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG---YNNIEAFVFDLRN-PLPEDLKRKFDVF 225 (354)
T ss_pred cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC---ccchhheeehhcc-cChHHHHhhCCee
Confidence 3577899999 555566666666655699999999999999999888876 4668888889866 444 3689988
Q ss_pred EecchhccCCCHHHHHHHHHHhcccC---cEEEEEEe
Q 021975 242 HAGAALHCWPSPSNAVAEISRILRSG---GVFVGTTF 275 (304)
Q Consensus 242 ~~~~vl~h~~d~~~~l~~~~r~Lkpg---G~lvi~~~ 275 (304)
+..- -+-++-...++..=...||.- |++.++.-
T Consensus 226 iTDP-peTi~alk~FlgRGI~tLkg~~~aGyfgiT~r 261 (354)
T COG1568 226 ITDP-PETIKALKLFLGRGIATLKGEGCAGYFGITRR 261 (354)
T ss_pred ecCc-hhhHHHHHHHHhccHHHhcCCCccceEeeeec
Confidence 7621 111111223445555566665 67777663
No 343
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=92.01 E-value=0.072 Score=32.46 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=19.2
Q ss_pred eeccCCCccccccC-CCCccccccccCceeeCCCCccc
Q 021975 61 FSCPICYEPLIRKG-PTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 61 l~CP~C~~~l~~~~-~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
+.||.|++...... .+.-..++-+.-.++|.+|++.+
T Consensus 1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~w 38 (39)
T PF01096_consen 1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRW 38 (39)
T ss_dssp S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEE
T ss_pred CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCee
Confidence 46999999531111 11112233344688999999875
No 344
>PTZ00357 methyltransferase; Provisional
Probab=91.86 E-value=1.2 Score=44.40 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=64.1
Q ss_pred eEEEEcCCccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHh-cCcc-----CCCCeEEEEccCCCCCCCC---
Q 021975 169 LLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQ-DNTI-----LTSNLALVRADVCRLPFAS--- 235 (304)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~-~~~~-----~~~~i~~~~~d~~~lp~~~--- 235 (304)
.|+-+|+|-|.+.....+. +-..++++||-++..+...+.+... ..+. ....|+++..|+..+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999986655543 3356899999996654444443311 1110 1245899999998874321
Q ss_pred --------CccceEEecchhccCCCH---HHHHHHHHHhccc----CcE
Q 021975 236 --------GFVDAVHAGAALHCWPSP---SNAVAEISRILRS----GGV 269 (304)
Q Consensus 236 --------~~fD~V~~~~vl~h~~d~---~~~l~~~~r~Lkp----gG~ 269 (304)
+.+|+|++- .|-.+.|- .+-|..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 369999872 23333222 3668888888886 775
No 345
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=91.82 E-value=0.23 Score=47.12 Aligned_cols=104 Identities=22% Similarity=0.310 Sum_probs=79.7
Q ss_pred cCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC----CCCCCccc
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVD 239 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD 239 (304)
.++.+|||.=|++|.-+...+...+ -.++++-|.++..+...+++.+.++ ....+.....|+..+ +-....||
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~--v~~ive~~~~DA~~lM~~~~~~~~~FD 185 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG--VEDIVEPHHSDANVLMYEHPMVAKFFD 185 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC--chhhcccccchHHHHHHhccccccccc
Confidence 4567899999999988777776633 4689999999999999999988776 455566667776442 23356899
Q ss_pred eEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
+|-.. -...+..+|+.+.+.++.||.|.++.
T Consensus 186 vIDLD----PyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 186 VIDLD----PYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred eEecC----CCCCccHHHHHHHHHhhcCCEEEEEe
Confidence 88762 23456789999999999999988865
No 346
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=91.81 E-value=5.3 Score=35.26 Aligned_cols=117 Identities=11% Similarity=-0.007 Sum_probs=74.9
Q ss_pred HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-C----
Q 021975 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L---- 231 (304)
Q Consensus 157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-l---- 231 (304)
.+.+.+... ...|+.+|||-=.-...+... .+..++-+|. |+.++.-++.++..+.....+..++..|+.. +
T Consensus 73 ~i~~~~~~g-~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L 149 (260)
T TIGR00027 73 FLLAAVAAG-IRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAAL 149 (260)
T ss_pred HHHHHHhcC-CcEEEEeCCccccHHHhcCCC-CCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHH
Confidence 344444432 457999999986555555322 2346666664 5567777777775442235678899999852 1
Q ss_pred ---CCCCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeC
Q 021975 232 ---PFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 232 ---p~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
.|....--++++-+++.+++.. ..+++.+.+...||+.+++....
T Consensus 150 ~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 150 AAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred HhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 1222233477778888888754 46889998888888888876544
No 347
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=91.81 E-value=0.095 Score=42.12 Aligned_cols=41 Identities=24% Similarity=0.521 Sum_probs=26.1
Q ss_pred eeeccCCCccccccCCCCc------cccccccCceeeCCCCccccCC
Q 021975 60 LFSCPICYEPLIRKGPTGL------TLGAIYRSGFKCRKCDKTYSSK 100 (304)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~------~~~~i~~~~l~C~~C~~~~~~~ 100 (304)
.-+||.|++++.......+ .........++|+.||..|-..
T Consensus 91 ~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~kiyW~G 137 (147)
T PF01927_consen 91 FSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKIYWEG 137 (147)
T ss_pred CCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCEeccc
Confidence 5789999998865443211 1111223478999999988443
No 348
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=91.79 E-value=3 Score=40.51 Aligned_cols=127 Identities=14% Similarity=0.142 Sum_probs=79.1
Q ss_pred CCCcHHHHHHHHHhhccc--CCCeEEEEcCCccHHHHHHHHh---C-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCe
Q 021975 148 FPGPDEEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKS---G-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNL 221 (304)
Q Consensus 148 ~~~~~~~~~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~---~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i 221 (304)
+..+.++.+.+.+.+... ++..|.|.-||+|.++...... + ....++|.+..+.+...++.++..++. .....
T Consensus 197 ~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~-~~~t~ 275 (501)
T TIGR00497 197 FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI-DYANF 275 (501)
T ss_pred eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC-Ccccc
Confidence 567778888777766543 4568999999999998765432 1 124699999999999999988655441 01122
Q ss_pred EEEEccCCCCC-C-CCCccceEEecchh--------------------cc----CC-CHHHHHHHHHHhcccCcEEEEEE
Q 021975 222 ALVRADVCRLP-F-ASGFVDAVHAGAAL--------------------HC----WP-SPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 222 ~~~~~d~~~lp-~-~~~~fD~V~~~~vl--------------------~h----~~-d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
....+|....+ + ....||+|+++--+ .| .. .-..++..+..+|++||...+.-
T Consensus 276 ~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 276 NIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred CcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 23233332211 1 23457777753211 11 11 11257888899999999865554
Q ss_pred e
Q 021975 275 F 275 (304)
Q Consensus 275 ~ 275 (304)
+
T Consensus 356 ~ 356 (501)
T TIGR00497 356 F 356 (501)
T ss_pred c
Confidence 4
No 349
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.78 E-value=1.1 Score=41.07 Aligned_cols=95 Identities=14% Similarity=0.060 Sum_probs=58.2
Q ss_pred cCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeC---CHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC--CCCCCcc
Q 021975 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDF---SENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFV 238 (304)
Q Consensus 165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~---s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~f 238 (304)
.++.+||-+|+|. |.+...+++.. +.++++++. ++.-.+.+++ .+ ...+...-.+. ....+.+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~----~G------a~~v~~~~~~~~~~~~~~~~ 239 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEE----LG------ATYVNSSKTPVAEVKLVGEF 239 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHH----cC------CEEecCCccchhhhhhcCCC
Confidence 4577899999875 66666677663 348999986 5666666654 11 22221110110 0012458
Q ss_pred ceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
|+|+-.-. .+ ..+.+..+.|++||.+++....
T Consensus 240 d~vid~~g-----~~-~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 240 DLIIEATG-----VP-PLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred CEEEECcC-----CH-HHHHHHHHHccCCcEEEEEecC
Confidence 88776432 22 3678899999999998876543
No 350
>PF14353 CpXC: CpXC protein
Probab=91.69 E-value=0.1 Score=40.77 Aligned_cols=41 Identities=20% Similarity=0.436 Sum_probs=25.2
Q ss_pred eeccCCCccccccCCCCccccc-------ccc---CceeeCCCCccccCCC
Q 021975 61 FSCPICYEPLIRKGPTGLTLGA-------IYR---SGFKCRKCDKTYSSKD 101 (304)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~-------i~~---~~l~C~~C~~~~~~~~ 101 (304)
+.||.|+..........++... +.. ..+.|++||+.+...-
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~ 52 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEY 52 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCC
Confidence 6899999986554433332111 111 3578999999886543
No 351
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=91.64 E-value=0.13 Score=38.46 Aligned_cols=31 Identities=16% Similarity=0.487 Sum_probs=24.7
Q ss_pred eeccCCCccccccCCCCccccccccCceeeCCCCccccCCC
Q 021975 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (304)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~ 101 (304)
-.||.|++....... ..+.|+.|+|.+...+
T Consensus 3 p~CP~C~seytY~dg----------~~~iCpeC~~EW~~~~ 33 (109)
T TIGR00686 3 PPCPKCNSEYTYHDG----------TQLICPSCLYEWNENE 33 (109)
T ss_pred CcCCcCCCcceEecC----------CeeECccccccccccc
Confidence 579999999877553 5799999999985543
No 352
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=91.59 E-value=0.2 Score=32.31 Aligned_cols=34 Identities=32% Similarity=0.606 Sum_probs=23.3
Q ss_pred eccCCCccccccCCCCccccccccCceeeCCCCccccCCCC
Q 021975 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN 102 (304)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g 102 (304)
-||.||.-+....... ...+.|+.||+.+.+...
T Consensus 2 FCp~Cg~~l~~~~~~~-------~~~~vC~~Cg~~~~~~~~ 35 (52)
T smart00661 2 FCPKCGNMLIPKEGKE-------KRRFVCRKCGYEEPIEQK 35 (52)
T ss_pred CCCCCCCccccccCCC-------CCEEECCcCCCeEECCCc
Confidence 4999999775543210 137899999988766544
No 353
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=91.52 E-value=0.11 Score=35.80 Aligned_cols=26 Identities=35% Similarity=0.945 Sum_probs=16.6
Q ss_pred eeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
+.||.|+.+|.... +.++|..|+..|
T Consensus 2 ~~CP~C~~~L~~~~-----------~~~~C~~C~~~~ 27 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-----------GHYHCEACQKDY 27 (70)
T ss_dssp -B-SSS-SBEEEET-----------TEEEETTT--EE
T ss_pred CcCCCCCCccEEeC-----------CEEECccccccc
Confidence 57999999987755 578888887765
No 354
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=91.50 E-value=3.8 Score=34.94 Aligned_cols=114 Identities=14% Similarity=0.076 Sum_probs=68.5
Q ss_pred HHHHHhhcccCCCeEEEEcCCccH--HHHHH--HHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC-CC
Q 021975 156 KMAQEYFKSAQGGLLVDVSCGSGL--FSRKF--AKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CR 230 (304)
Q Consensus 156 ~~l~~~l~~~~~~~vLDiGcG~G~--~~~~l--~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~ 230 (304)
++|...-...+...++++.++.|. .+..| +.+..++++++|-+++......++.+...+ ...-++|+.++. +.
T Consensus 31 EfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~--~~~~vEfvvg~~~e~ 108 (218)
T PF07279_consen 31 EFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG--LSDVVEFVVGEAPEE 108 (218)
T ss_pred HHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc--ccccceEEecCCHHH
Confidence 444444444556789999766542 23333 333335699999999988888888887666 345578888874 22
Q ss_pred CCCCCCccceEEecchhccCCCHHHHHHHHHHhcc--cCcEEEEEEeCC
Q 021975 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILR--SGGVFVGTTFLR 277 (304)
Q Consensus 231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lk--pgG~lvi~~~~~ 277 (304)
+--.-...|+++...= ...+.+++.+.++ |.|-+++.....
T Consensus 109 ~~~~~~~iDF~vVDc~------~~d~~~~vl~~~~~~~~GaVVV~~Na~ 151 (218)
T PF07279_consen 109 VMPGLKGIDFVVVDCK------REDFAARVLRAAKLSPRGAVVVCYNAF 151 (218)
T ss_pred HHhhccCCCEEEEeCC------chhHHHHHHHHhccCCCceEEEEeccc
Confidence 2111235788877542 3333445555444 457777666543
No 355
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=91.49 E-value=3 Score=35.91 Aligned_cols=97 Identities=23% Similarity=0.290 Sum_probs=61.2
Q ss_pred cCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-----CCCCCcc
Q 021975 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFASGFV 238 (304)
Q Consensus 165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~~f 238 (304)
.++.+||..|+|. |..+..+++.. +.++++++.++...+.+++.. . ..++....... ....+.+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g--------~-~~~~~~~~~~~~~~~~~~~~~~~ 202 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELG--------A-DHVIDYKEEDLEEELRLTGGGGA 202 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhC--------C-ceeccCCcCCHHHHHHHhcCCCC
Confidence 5678999999996 66666666653 359999999988777775421 0 01111110110 0123568
Q ss_pred ceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
|+|+.... .. ..+..+.+.|+++|.++......
T Consensus 203 d~vi~~~~-----~~-~~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 203 DVVIDAVG-----GP-ETLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred CEEEECCC-----CH-HHHHHHHHhcccCCEEEEEccCC
Confidence 99886432 21 45777889999999988766443
No 356
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=91.40 E-value=0.12 Score=39.80 Aligned_cols=31 Identities=6% Similarity=0.023 Sum_probs=24.2
Q ss_pred eeeccCCCccccccCCCCccccccccCceeeCCCCccccCC
Q 021975 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (304)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~ 100 (304)
.-.||.||..+.-... ....|+.||..|+..
T Consensus 9 Kr~Cp~cg~kFYDLnk----------~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 9 KRICPNTGSKFYDLNR----------RPAVSPYTGEQFPPE 39 (129)
T ss_pred cccCCCcCccccccCC----------CCccCCCcCCccCcc
Confidence 3579999999866442 578999999988554
No 357
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.39 E-value=5 Score=39.05 Aligned_cols=31 Identities=19% Similarity=0.117 Sum_probs=21.6
Q ss_pred eEEEEcCCccHHHHHHHHhCCCCeEEEEeCC
Q 021975 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFS 199 (304)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s 199 (304)
.+--.|-|+=.....+.+.+|+..+.-+|-+
T Consensus 263 ~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d 293 (505)
T TIGR00595 263 DLVYKGYGTEQVEEELAKLFPGARIARIDSD 293 (505)
T ss_pred eeEeecccHHHHHHHHHhhCCCCcEEEEecc
Confidence 4556677777777777777776677777654
No 358
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.37 E-value=1.5 Score=39.55 Aligned_cols=89 Identities=15% Similarity=0.115 Sum_probs=56.3
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975 166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (304)
Q Consensus 166 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (304)
++.++|=+|||. |.++..+++......++++|.++..++.+... .++ |..+. ....+|+|+-.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~------------~~i--~~~~~--~~~g~Dvvid~ 207 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY------------EVL--DPEKD--PRRDYRAIYDA 207 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc------------ccc--Chhhc--cCCCCCEEEEC
Confidence 466788889874 77777777764233477889888766655431 111 11110 13458888764
Q ss_pred chhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
- .. ...+..+.+.|+++|++++....
T Consensus 208 ~-----G~-~~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 208 S-----GD-PSLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred C-----CC-HHHHHHHHHhhhcCcEEEEEeec
Confidence 3 22 23578889999999999876643
No 359
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=91.15 E-value=0.13 Score=41.60 Aligned_cols=40 Identities=25% Similarity=0.492 Sum_probs=23.7
Q ss_pred eeccCCCccccccCCCCc-cccccccCceeeCCCCccccCC
Q 021975 61 FSCPICYEPLIRKGPTGL-TLGAIYRSGFKCRKCDKTYSSK 100 (304)
Q Consensus 61 l~CP~C~~~l~~~~~~~~-~~~~i~~~~l~C~~C~~~~~~~ 100 (304)
+.||-|+++......... ..+.......+|+.||..|..-
T Consensus 1 m~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~~ 41 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTTF 41 (154)
T ss_pred CcCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceEe
Confidence 479999997633222221 1122222348899999988443
No 360
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=91.09 E-value=0.46 Score=41.63 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=62.8
Q ss_pred hhcccCCCeEEEEcCCccHHHHHHH---Hh-C-CCCeEEEEeCCH--------------------------HHHHHHHHH
Q 021975 161 YFKSAQGGLLVDVSCGSGLFSRKFA---KS-G-TYSGVVALDFSE--------------------------NMLRQCYDF 209 (304)
Q Consensus 161 ~l~~~~~~~vLDiGcG~G~~~~~l~---~~-~-~~~~v~giD~s~--------------------------~~~~~a~~~ 209 (304)
.+...-.+.|+|.||-.|..+..++ +. + .+.++++.|--+ ...+..+++
T Consensus 69 v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n 148 (248)
T PF05711_consen 69 VLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVREN 148 (248)
T ss_dssp CCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHC
T ss_pred HHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHH
Confidence 3333446799999999998665443 22 2 345788888421 134455555
Q ss_pred HHhcCccCCCCeEEEEccCCC-CC-CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975 210 IKQDNTILTSNLALVRADVCR-LP-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 210 ~~~~~~~~~~~i~~~~~d~~~-lp-~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+...++ ...++.++.+.+.+ +| .+...+-++..-.-+. ..-...|+.+...|.|||++++-++..
T Consensus 149 ~~~~gl-~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY--esT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 149 FARYGL-LDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY--ESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp CCCTTT-SSTTEEEEES-HHHHCCC-TT--EEEEEE---SH--HHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred HHHcCC-CcccEEEECCcchhhhccCCCccEEEEEEeccch--HHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 555443 34689999999854 33 2233333333321111 122468999999999999999999876
No 361
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=91.08 E-value=0.16 Score=28.51 Aligned_cols=22 Identities=27% Similarity=0.841 Sum_probs=11.4
Q ss_pred eccCCCccccccCCCCccccccccCceeeCC
Q 021975 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRK 92 (304)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~ 92 (304)
.||+|++++.+.... ..++|.+
T Consensus 1 ~CP~C~s~l~~~~~e---------v~~~C~N 22 (28)
T PF03119_consen 1 TCPVCGSKLVREEGE---------VDIRCPN 22 (28)
T ss_dssp B-TTT--BEEE-CCT---------TCEEE--
T ss_pred CcCCCCCEeEcCCCC---------EeEECCC
Confidence 499999999865532 4677764
No 362
>PRK05580 primosome assembly protein PriA; Validated
Probab=90.57 E-value=4.7 Score=40.80 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=19.7
Q ss_pred eEEEEcCCccHHHHHHHHhCCCCeEEEEeCC
Q 021975 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFS 199 (304)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s 199 (304)
.+-..|-|+=.....+.+.+|+..+.-+|-+
T Consensus 431 ~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d 461 (679)
T PRK05580 431 DLVPVGPGTERLEEELAELFPEARILRIDRD 461 (679)
T ss_pred eeEEeeccHHHHHHHHHHhCCCCcEEEEecc
Confidence 4556666666666667666666666666643
No 363
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=90.51 E-value=2.9 Score=39.04 Aligned_cols=120 Identities=17% Similarity=0.137 Sum_probs=69.0
Q ss_pred HHHHHhhcccCCCeEEEEcCCccH----HHHHHHHhC---CCCeEEEEeC----CHHHHHHHHHHHHhcCccCCCCeEEE
Q 021975 156 KMAQEYFKSAQGGLLVDVSCGSGL----FSRKFAKSG---TYSGVVALDF----SENMLRQCYDFIKQDNTILTSNLALV 224 (304)
Q Consensus 156 ~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~~---~~~~v~giD~----s~~~~~~a~~~~~~~~~~~~~~i~~~ 224 (304)
..|.+.+...+.-.|+|+|-|.|. +...|+.+. |..+++||+. +...++.+.+++....-......+|.
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~ 179 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFH 179 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEE
Confidence 344555555556679999999995 445555541 4578999999 77777777777644331112333443
Q ss_pred E---ccCCCC-----CCCCCccceEEecchhccCCC-------HHHHHHHHHHhcccCcEEEEEEeC
Q 021975 225 R---ADVCRL-----PFASGFVDAVHAGAALHCWPS-------PSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 225 ~---~d~~~l-----p~~~~~fD~V~~~~vl~h~~d-------~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
. .+.+++ ....+..=+|-+.+.|||+.+ |...+=...+.|+|.- +++++..
T Consensus 180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v-vv~~E~e 245 (374)
T PF03514_consen 180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV-VVLVEQE 245 (374)
T ss_pred ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE-EEEEeec
Confidence 3 233332 122333334455677899862 3333445566889974 4444443
No 364
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=90.50 E-value=0.19 Score=30.91 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=20.3
Q ss_pred CCeeeccCCCccccccCCCCccccccccCceeeCCCC
Q 021975 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCD 94 (304)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~ 94 (304)
|-.-.||.|+.++.+... +...|..|+
T Consensus 15 ML~~~Cp~C~~PL~~~k~----------g~~~Cv~C~ 41 (41)
T PF06677_consen 15 MLDEHCPDCGTPLMRDKD----------GKIYCVSCG 41 (41)
T ss_pred HhcCccCCCCCeeEEecC----------CCEECCCCC
Confidence 334579999999988432 678899885
No 365
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=90.48 E-value=0.12 Score=28.35 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=17.4
Q ss_pred eeccCCCccccccCCCCccccccccCceeeCCCCcc
Q 021975 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (304)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 96 (304)
..||.||..+.. +.-.|+.||..
T Consensus 3 ~~Cp~Cg~~~~~-------------~~~fC~~CG~~ 25 (26)
T PF13248_consen 3 MFCPNCGAEIDP-------------DAKFCPNCGAK 25 (26)
T ss_pred CCCcccCCcCCc-------------ccccChhhCCC
Confidence 579999996533 46789999863
No 366
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=90.44 E-value=1 Score=45.29 Aligned_cols=108 Identities=17% Similarity=0.116 Sum_probs=63.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHhC-------C-----CCeEEEEeCCH---HHHHHHH-----------HHHHhc-----C
Q 021975 166 QGGLLVDVSCGSGLFSRKFAKSG-------T-----YSGVVALDFSE---NMLRQCY-----------DFIKQD-----N 214 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~l~~~~-------~-----~~~v~giD~s~---~~~~~a~-----------~~~~~~-----~ 214 (304)
+.-+|+|+|=|+|.......+.. + ..+++++|..| +.+..+. +..+.. +
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34689999999998654444221 2 24789999654 2222222 111110 1
Q ss_pred c---c---CCCCeEEEEccCCC-CCCCCCccceEEecchhccCCCH----HHHHHHHHHhcccCcEEEEEE
Q 021975 215 T---I---LTSNLALVRADVCR-LPFASGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 215 ~---~---~~~~i~~~~~d~~~-lp~~~~~fD~V~~~~vl~h~~d~----~~~l~~~~r~LkpgG~lvi~~ 274 (304)
. . ....++++.+|+.+ ++--...||+++.... .=-.+| ..+++++.++++|||++.-.+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~F-sP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGF-APAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCC-CCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 0 0 01245567788754 2211246999998531 111234 378999999999999988554
No 367
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=90.19 E-value=3.5 Score=36.50 Aligned_cols=95 Identities=24% Similarity=0.175 Sum_probs=57.9
Q ss_pred cCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEE-ccC----CCCCCCCCcc
Q 021975 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADV----CRLPFASGFV 238 (304)
Q Consensus 165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~----~~lp~~~~~f 238 (304)
.++.+||-+|+|. |..+..+++......++++|.++...+.+++. + .. .++. .+. ..+ .....+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----G----a~-~~i~~~~~~~~~~~~-~~~~g~ 188 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----G----AT-ALAEPEVLAERQGGL-QNGRGV 188 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----C----Cc-EecCchhhHHHHHHH-hCCCCC
Confidence 4678899998864 55666666653222499999999888777662 1 11 1111 010 001 012358
Q ss_pred ceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
|+|+-.- .. ...+.+..+.|+++|++++...
T Consensus 189 d~vid~~-----G~-~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 189 DVALEFS-----GA-TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CEEEECC-----CC-hHHHHHHHHHhcCCCEEEEecc
Confidence 8887532 12 3457888999999999987764
No 368
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=90.01 E-value=0.18 Score=30.86 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=21.7
Q ss_pred eeccCCCcccccc-CCCCccccccccCceeeCCCCccc
Q 021975 61 FSCPICYEPLIRK-GPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 61 l~CP~C~~~l~~~-~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
..||.|+...... ..+.-+.++-+.-.+.|.+|++.+
T Consensus 1 ~~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w 38 (40)
T smart00440 1 APCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRW 38 (40)
T ss_pred CcCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEe
Confidence 3699999853211 111112233444688999999875
No 369
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=89.85 E-value=0.62 Score=43.53 Aligned_cols=67 Identities=9% Similarity=0.063 Sum_probs=54.3
Q ss_pred CCCeEEEEccCCCCC--CCCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCCCCCCccc
Q 021975 218 TSNLALVRADVCRLP--FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSL 284 (304)
Q Consensus 218 ~~~i~~~~~d~~~lp--~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~ 284 (304)
.+++.++.+++.+.. .+++++|.++.....+.+++. .+.++++.+.++|||++++-+....+.....
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~~~~~~ 344 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPPWYPGR 344 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCccc
Confidence 388999999997642 457899999999999988754 4789999999999999999998875544433
No 370
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=89.83 E-value=0.29 Score=30.62 Aligned_cols=28 Identities=21% Similarity=0.535 Sum_probs=21.8
Q ss_pred eeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
.+.|..||..+.... ...++|+.||+.-
T Consensus 2 ~Y~C~~Cg~~~~~~~----------~~~irC~~CG~rI 29 (44)
T smart00659 2 IYICGECGRENEIKS----------KDVVRCRECGYRI 29 (44)
T ss_pred EEECCCCCCEeecCC----------CCceECCCCCceE
Confidence 478999999876542 1689999999864
No 371
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=89.49 E-value=6.5 Score=36.07 Aligned_cols=97 Identities=16% Similarity=0.135 Sum_probs=59.4
Q ss_pred ccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC------CCCCC
Q 021975 164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL------PFASG 236 (304)
Q Consensus 164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l------p~~~~ 236 (304)
..++.+||-.|+|. |..+.++++.....+|+++|.++...+.+++. + .. .++...-.+. .....
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----G----a~-~~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----G----AT-HTVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----C----Cc-eEEcCCCcCHHHHHHHHhCCC
Confidence 45678899998864 56666677664222599999999888888652 1 11 1221111110 01123
Q ss_pred ccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
.+|+|+-.- ..+ ..+.+..+.+++||++++...
T Consensus 245 g~d~vid~~-----g~~-~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 245 GADVVIDAV-----GRP-ETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCEEEECC-----CCH-HHHHHHHHHhccCCEEEEECC
Confidence 588887532 233 357778899999999987654
No 372
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=89.48 E-value=0.28 Score=31.85 Aligned_cols=36 Identities=22% Similarity=0.413 Sum_probs=21.3
Q ss_pred CeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
..+.||+||+.-......+ .....-.+.|+.|.+..
T Consensus 3 ~Wi~CP~CgnKTR~kir~D---T~LkNfPlyCpKCK~Et 38 (55)
T PF14205_consen 3 EWILCPICGNKTRLKIRED---TVLKNFPLYCPKCKQET 38 (55)
T ss_pred eEEECCCCCCccceeeecC---ceeccccccCCCCCceE
Confidence 4678999998542222111 11222468899998764
No 373
>COG1779 C4-type Zn-finger protein [General function prediction only]
Probab=89.40 E-value=0.16 Score=42.37 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=26.4
Q ss_pred cCCeeeccCCCccccccCC--CCccccccccCceeeCCCCccc
Q 021975 57 EGDLFSCPICYEPLIRKGP--TGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~--~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
....+.||+|++.+..... ...-.+.+......|.+||..+
T Consensus 11 ~~~~~~CPvCg~~l~~~~~~~~IPyFG~V~i~t~~C~~CgYR~ 53 (201)
T COG1779 11 FETRIDCPVCGGTLKAHMYLYDIPYFGEVLISTGVCERCGYRS 53 (201)
T ss_pred eeeeecCCcccceeeEEEeeecCCccceEEEEEEEccccCCcc
Confidence 3456889999997644221 1113344555678999998765
No 374
>PRK11524 putative methyltransferase; Provisional
Probab=89.39 E-value=0.29 Score=43.87 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=37.9
Q ss_pred CCeEEEEccCCCC--CCCCCccceEEecchhc---c-------C------CCHHHHHHHHHHhcccCcEEEEEE
Q 021975 219 SNLALVRADVCRL--PFASGFVDAVHAGAALH---C-------W------PSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 219 ~~i~~~~~d~~~l--p~~~~~fD~V~~~~vl~---h-------~------~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
....++++|..+. .+++++||+|++.--.. . . .-....+.++.++|||||.+++..
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 3456788888663 35678899999842211 0 0 011368899999999999998753
No 375
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=89.38 E-value=0.3 Score=31.88 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=21.5
Q ss_pred eeeccCCCccccccCCCCccccccccCceeeCCCCccccC
Q 021975 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (304)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~ 99 (304)
+..||.||+.-...... ..+......+.|.+|+...+.
T Consensus 1 LkPCPfCGg~~~~~~~~--~~~~~~~~~~~C~~Cga~~~~ 38 (53)
T TIGR03655 1 LKPCPFCGGADVYLRRG--FDPLDLSHYFECSTCGASGPV 38 (53)
T ss_pred CCCCCCCCCcceeeEec--cCCCCCEEEEECCCCCCCccc
Confidence 35799999965421100 011112245589999987654
No 376
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=89.20 E-value=0.18 Score=36.64 Aligned_cols=30 Identities=27% Similarity=0.821 Sum_probs=21.7
Q ss_pred CeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
....||.|+..-.... ..+.|.|..|+..+
T Consensus 34 ~ky~Cp~Cgk~~vkR~---------a~GIW~C~~C~~~~ 63 (90)
T PF01780_consen 34 AKYTCPFCGKTSVKRV---------ATGIWKCKKCGKKF 63 (90)
T ss_dssp S-BEESSSSSSEEEEE---------ETTEEEETTTTEEE
T ss_pred CCCcCCCCCCceeEEe---------eeEEeecCCCCCEE
Confidence 4588999999753322 12789999999876
No 377
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=89.18 E-value=0.21 Score=29.58 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=19.9
Q ss_pred eeccCCCccccccCCCCccccccccCceeeCCCCccccCC
Q 021975 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (304)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~ 100 (304)
.-||.|+.-|....... ....|++|+..+++.
T Consensus 2 ~FCp~C~nlL~p~~~~~--------~~~~C~~C~Y~~~~~ 33 (35)
T PF02150_consen 2 RFCPECGNLLYPKEDKE--------KRVACRTCGYEEPIS 33 (35)
T ss_dssp -BETTTTSBEEEEEETT--------TTEEESSSS-EEE-S
T ss_pred eeCCCCCccceEcCCCc--------cCcCCCCCCCccCCC
Confidence 35999999886544211 222899999887654
No 378
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=89.03 E-value=5.8 Score=36.66 Aligned_cols=98 Identities=28% Similarity=0.241 Sum_probs=59.2
Q ss_pred cccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-----CCCCC
Q 021975 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFASG 236 (304)
Q Consensus 163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~ 236 (304)
...++.+||=.|+|. |..+..+++.....+|+++|.++...+.+++. + .. .++...-.+. ....+
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----G----a~-~~i~~~~~~~~~~i~~~~~~ 258 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----G----AT-ATVNAGDPNAVEQVRELTGG 258 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----C----Cc-eEeCCCchhHHHHHHHHhCC
Confidence 345677888899764 55666666664223699999999988888652 1 11 1121111110 01123
Q ss_pred ccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
.+|+|+-.- .. ...+....+.|+++|.+++...
T Consensus 259 g~d~vid~~-----G~-~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 259 GVDYAFEMA-----GS-VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCCEEEECC-----CC-hHHHHHHHHHHhcCCEEEEEcc
Confidence 588887532 12 2457788899999999887654
No 379
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.01 E-value=4.5 Score=38.26 Aligned_cols=90 Identities=10% Similarity=0.039 Sum_probs=57.9
Q ss_pred cCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEe
Q 021975 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (304)
Q Consensus 165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (304)
.++.+|+-+|+|. |......++.. +.+|+.+|.++.....|+. .....+. ..+. . ..+|+|+.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~----------~G~~~~~--~~e~-v--~~aDVVI~ 263 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAM----------EGYEVMT--MEEA-V--KEGDIFVT 263 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHh----------cCCEEcc--HHHH-H--cCCCEEEE
Confidence 4688999999997 66555555442 3489999999988777765 1222221 1111 1 24798886
Q ss_pred cchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 244 GAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 244 ~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
.- ..+..+-.+..+.+|+||+++....
T Consensus 264 at-----G~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 264 TT-----GNKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred CC-----CCHHHHHHHHHhcCCCCcEEEEeCC
Confidence 42 2343333445899999999987764
No 380
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.96 E-value=0.2 Score=37.18 Aligned_cols=26 Identities=35% Similarity=0.843 Sum_probs=21.1
Q ss_pred CeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
-+..||+|+..+.. ..++|++|+...
T Consensus 5 ~~~~cPvcg~~~iV-------------TeL~c~~~etTV 30 (122)
T COG3877 5 VINRCPVCGRKLIV-------------TELKCSNCETTV 30 (122)
T ss_pred CCCCCCccccccee-------------EEEecCCCCceE
Confidence 35789999999877 579999998653
No 381
>PRK14873 primosome assembly protein PriA; Provisional
Probab=88.90 E-value=5.2 Score=40.33 Aligned_cols=95 Identities=18% Similarity=0.091 Sum_probs=53.5
Q ss_pred CeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc--
Q 021975 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA-- 245 (304)
Q Consensus 168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~-- 245 (304)
..+.-.|-|+-..-..+.+.+|+..|.-+|-+. .++. +. ....++.+.=...|.-.+.+.+|....
T Consensus 431 ~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d~-~l~~----~~-------~~~~IlVGTqgaepm~~g~~~lV~ildaD 498 (665)
T PRK14873 431 DRLRAVVVGARRTAEELGRAFPGVPVVTSGGDQ-VVDT----VD-------AGPALVVATPGAEPRVEGGYGAALLLDAW 498 (665)
T ss_pred CcceeeeccHHHHHHHHHHHCCCCCEEEEChHH-HHHh----hc-------cCCCEEEECCCCcccccCCceEEEEEcch
Confidence 357778888888888888888888888888432 2211 11 245556555322333335677665533
Q ss_pred hhccCCCHH---HHHHHHHHh---c---ccCcEEEEEE
Q 021975 246 ALHCWPSPS---NAVAEISRI---L---RSGGVFVGTT 274 (304)
Q Consensus 246 vl~h~~d~~---~~l~~~~r~---L---kpgG~lvi~~ 274 (304)
.+-+.+|.. .+++.+..+ . +++|.+++.+
T Consensus 499 ~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~ 536 (665)
T PRK14873 499 ALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA 536 (665)
T ss_pred hhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe
Confidence 233344443 344433332 3 3468888765
No 382
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=88.86 E-value=1.6 Score=38.59 Aligned_cols=74 Identities=20% Similarity=0.212 Sum_probs=47.0
Q ss_pred HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-----CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-----TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (304)
Q Consensus 156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (304)
..+.+.-...+...++|+|||.|.++.+++... ....++.||-...-.+ +-.++.... ....+.-+..|+.+
T Consensus 8 ~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K-~D~~~~~~~--~~~~~~R~riDI~d 84 (259)
T PF05206_consen 8 GNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHK-ADNKIRKDE--SEPKFERLRIDIKD 84 (259)
T ss_pred HHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccccc-chhhhhccC--CCCceEEEEEEeec
Confidence 344443333556799999999999999999875 4568999997553322 222222221 11356777778877
Q ss_pred CC
Q 021975 231 LP 232 (304)
Q Consensus 231 lp 232 (304)
+.
T Consensus 85 l~ 86 (259)
T PF05206_consen 85 LD 86 (259)
T ss_pred cc
Confidence 64
No 383
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=88.57 E-value=1.7 Score=39.19 Aligned_cols=100 Identities=20% Similarity=0.192 Sum_probs=71.8
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975 166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (304)
Q Consensus 166 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (304)
++.+|.-||.|. |.....++.-. +++|+-+|+|..-+++....+. .++.........+.-.-...|+|+..
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~-------~rv~~~~st~~~iee~v~~aDlvIga 238 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFG-------GRVHTLYSTPSNIEEAVKKADLVIGA 238 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhC-------ceeEEEEcCHHHHHHHhhhccEEEEE
Confidence 456788888885 66666665543 5699999999998888877542 45666665554443223468988876
Q ss_pred chhccCCCHHHHHHHHHHhcccCcEEEEE
Q 021975 245 AALHCWPSPSNAVAEISRILRSGGVFVGT 273 (304)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~LkpgG~lvi~ 273 (304)
-.+---..|.-..+++.+.+|||++++=.
T Consensus 239 VLIpgakaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 239 VLIPGAKAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred EEecCCCCceehhHHHHHhcCCCcEEEEE
Confidence 55555668888899999999999988743
No 384
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=88.53 E-value=1.4 Score=36.62 Aligned_cols=95 Identities=13% Similarity=0.153 Sum_probs=56.3
Q ss_pred HHHHHhhcccCCC-eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--
Q 021975 156 KMAQEYFKSAQGG-LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-- 232 (304)
Q Consensus 156 ~~l~~~l~~~~~~-~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-- 232 (304)
+.+.+++...++. .|+.+|||-=.....+....++..++-+|. |++++.-++.++..+.....+.+++.+|+.+..
T Consensus 67 ~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~ 145 (183)
T PF04072_consen 67 DAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWI 145 (183)
T ss_dssp HHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHH
T ss_pred HHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhH
Confidence 4455555444454 899999999888777777644567888885 667777777766553101123567999987621
Q ss_pred -------CCCCccceEEecchhccCC
Q 021975 233 -------FASGFVDAVHAGAALHCWP 251 (304)
Q Consensus 233 -------~~~~~fD~V~~~~vl~h~~ 251 (304)
+..+.--++++-+++.+++
T Consensus 146 ~~L~~~g~~~~~ptl~i~Egvl~Yl~ 171 (183)
T PF04072_consen 146 DALPKAGFDPDRPTLFIAEGVLMYLS 171 (183)
T ss_dssp HHHHHCTT-TTSEEEEEEESSGGGS-
T ss_pred HHHHHhCCCCCCCeEEEEcchhhcCC
Confidence 2234445677777788875
No 385
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=88.52 E-value=5.7 Score=35.92 Aligned_cols=95 Identities=20% Similarity=0.294 Sum_probs=58.9
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc---CCCCCCCCCccceE
Q 021975 166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD---VCRLPFASGFVDAV 241 (304)
Q Consensus 166 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d---~~~lp~~~~~fD~V 241 (304)
++.+||-.|+|. |..+..+++......+++++.++...+.+++. + .. .++... +..+....+.+|+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g----~~-~vi~~~~~~~~~~~~~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----G----AD-ETVNLARDPLAAYAADKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----C----CC-EEEcCCchhhhhhhccCCCccEE
Confidence 677888888875 66766677664223789999988887766552 1 11 122111 11111122358998
Q ss_pred EecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 242 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
+..... ...++++.+.|+++|+++....
T Consensus 236 ld~~g~------~~~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 236 FEASGA------PAALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred EECCCC------HHHHHHHHHHHhcCCEEEEEec
Confidence 864321 2357888999999999987653
No 386
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=88.27 E-value=11 Score=34.00 Aligned_cols=96 Identities=10% Similarity=-0.015 Sum_probs=59.6
Q ss_pred hcccCCCeEEEEcC--CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC-CCC-----CC
Q 021975 162 FKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRL-----PF 233 (304)
Q Consensus 162 l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~l-----p~ 233 (304)
....++.+||=.|. |.|..+..+++.. +.++++++.+++..+.+++. + .. .++..+- ... ..
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~l----G----a~-~vi~~~~~~~~~~~~~~~ 203 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKL----G----FD-VAFNYKTVKSLEETLKKA 203 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc----C----CC-EEEeccccccHHHHHHHh
Confidence 34456788988884 4677777777763 34899999998887777551 1 11 1111111 010 01
Q ss_pred CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
..+.+|+|+-.- .. ..+....+.|+++|+++...
T Consensus 204 ~~~gvdvv~d~~-----G~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 204 SPDGYDCYFDNV-----GG--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred CCCCeEEEEECC-----CH--HHHHHHHHHhCcCcEEEEec
Confidence 124588887532 22 24688899999999998654
No 387
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.96 E-value=0.19 Score=38.44 Aligned_cols=45 Identities=24% Similarity=0.496 Sum_probs=29.8
Q ss_pred cCCeeeccCCCccccccCC--CCccccccccCceeeCCCCccccCCC
Q 021975 57 EGDLFSCPICYEPLIRKGP--TGLTLGAIYRSGFKCRKCDKTYSSKD 101 (304)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~--~~~~~~~i~~~~l~C~~C~~~~~~~~ 101 (304)
...+++||+|..+..-... .-..++.-|+..-.|.+||..|+..+
T Consensus 36 eati~qcp~csasirgd~~vegvlglg~dye~psfchncgs~fpwte 82 (160)
T COG4306 36 EATITQCPICSASIRGDYYVEGVLGLGGDYEPPSFCHNCGSRFPWTE 82 (160)
T ss_pred hHHHhcCCccCCcccccceeeeeeccCCCCCCcchhhcCCCCCCcHH
Confidence 3467899999998643221 12234444556678999999997653
No 388
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.81 E-value=0.3 Score=41.86 Aligned_cols=40 Identities=15% Similarity=0.460 Sum_probs=22.6
Q ss_pred eeeccCCCccccccCC----C-------Cc-----cccccccCceeeCCCCccccC
Q 021975 60 LFSCPICYEPLIRKGP----T-------GL-----TLGAIYRSGFKCRKCDKTYSS 99 (304)
Q Consensus 60 ~l~CP~C~~~l~~~~~----~-------~~-----~~~~i~~~~l~C~~C~~~~~~ 99 (304)
.+.||+|++.+..... . +. ..+-.....++||+||.....
T Consensus 5 ~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~ 60 (214)
T PF09986_consen 5 KITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFE 60 (214)
T ss_pred ceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCcccc
Confidence 4789999997533110 0 00 112222346789999876533
No 389
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=87.80 E-value=0.38 Score=29.24 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=21.8
Q ss_pred cCCeeeccCCCccccccCCCCccccccccCceeeCCCCc
Q 021975 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (304)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~ 95 (304)
.+-.+.||.|+..+...... .......|+.||.
T Consensus 2 p~Y~y~C~~Cg~~fe~~~~~------~~~~~~~CP~Cg~ 34 (41)
T smart00834 2 PIYEYRCEDCGHTFEVLQKI------SDDPLATCPECGG 34 (41)
T ss_pred CCEEEEcCCCCCEEEEEEec------CCCCCCCCCCCCC
Confidence 34568999999976443311 0125788999997
No 390
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=87.77 E-value=1.7 Score=34.77 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=27.4
Q ss_pred EEcCCcc--HHHHHHH--HhCCCCeEEEEeCCHHHHHHHHHH--HHhc
Q 021975 172 DVSCGSG--LFSRKFA--KSGTYSGVVALDFSENMLRQCYDF--IKQD 213 (304)
Q Consensus 172 DiGcG~G--~~~~~l~--~~~~~~~v~giD~s~~~~~~a~~~--~~~~ 213 (304)
|||+..| .....+. ..++..+++++|+++...+..+++ +...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 8999999 5555443 346677999999999999988888 5443
No 391
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=87.66 E-value=1.3 Score=43.45 Aligned_cols=105 Identities=17% Similarity=0.173 Sum_probs=62.0
Q ss_pred HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC--
Q 021975 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-- 231 (304)
Q Consensus 155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-- 231 (304)
+++-..|--..++..|||+||.+|.|+....+..| ++-|+|+|+-|-- ..+++..++.|+..-
T Consensus 33 lQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik--------------p~~~c~t~v~dIttd~c 98 (780)
T KOG1098|consen 33 LQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK--------------PIPNCDTLVEDITTDEC 98 (780)
T ss_pred HHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc--------------cCCccchhhhhhhHHHH
Confidence 33444444445678899999999999998888743 6689999996621 234444444454321
Q ss_pred --C----CCCCccceEEecchhccCC-----CH-------HHHHHHHHHhcccCcEEEEEE
Q 021975 232 --P----FASGFVDAVHAGAALHCWP-----SP-------SNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 232 --p----~~~~~fD~V~~~~vl~h~~-----d~-------~~~l~~~~r~LkpgG~lvi~~ 274 (304)
+ ...-..|+|+..+. +.+. |. ...++-....|..||.++--.
T Consensus 99 r~~l~k~l~t~~advVLhDga-pnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkv 158 (780)
T KOG1098|consen 99 RSKLRKILKTWKADVVLHDGA-PNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKV 158 (780)
T ss_pred HHHHHHHHHhCCCcEEeecCC-CccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccccc
Confidence 1 11234577765432 1111 11 134566677889999954433
No 392
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=87.63 E-value=2.6 Score=37.07 Aligned_cols=86 Identities=22% Similarity=0.270 Sum_probs=58.9
Q ss_pred cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (304)
Q Consensus 165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (304)
.++...+|+|+..|.++..|.+.+- .|+++|.-+ |.+..-. ...++....|-....-.....|-.+|.
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m--~V~aVDng~-ma~sL~d---------tg~v~h~r~DGfk~~P~r~~idWmVCD 277 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNM--RVYAVDNGP-MAQSLMD---------TGQVTHLREDGFKFRPTRSNIDWMVCD 277 (358)
T ss_pred cCCceeeecccCCCccchhhhhcce--EEEEeccch-hhhhhhc---------ccceeeeeccCcccccCCCCCceEEee
Confidence 4688999999999999999999976 999999654 3332222 356777777776654334567777775
Q ss_pred chhccCCCHHHHHHHHHHhccc
Q 021975 245 AALHCWPSPSNAVAEISRILRS 266 (304)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~Lkp 266 (304)
.| ..|.++-.-+...|..
T Consensus 278 mV----EkP~rv~~li~~Wl~n 295 (358)
T COG2933 278 MV----EKPARVAALIAKWLVN 295 (358)
T ss_pred hh----cCcHHHHHHHHHHHHc
Confidence 53 4565555555555543
No 393
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=87.59 E-value=0.32 Score=38.17 Aligned_cols=41 Identities=20% Similarity=0.517 Sum_probs=26.7
Q ss_pred CeeeccCCCccccccCCCCccccccccCceeeCCCCccccCCCCe
Q 021975 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNY 103 (304)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~ 103 (304)
.+..||.|++.. ......... . .+.++|+.|+..|....|+
T Consensus 29 ~~~~cP~C~s~~-~~k~g~~~~-~--~qRyrC~~C~~tf~~~~~~ 69 (129)
T COG3677 29 TKVNCPRCKSSN-VVKIGGIRR-G--HQRYKCKSCGSTFTVETGS 69 (129)
T ss_pred ccCcCCCCCccc-eeeECCccc-c--ccccccCCcCcceeeeccC
Confidence 457899999987 222111111 1 3789999999988666554
No 394
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=87.55 E-value=6.9 Score=29.33 Aligned_cols=87 Identities=16% Similarity=0.100 Sum_probs=55.3
Q ss_pred CCccHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----CCCCccceEEecchhc
Q 021975 175 CGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDAVHAGAALH 248 (304)
Q Consensus 175 cG~G~~~~~l~~~~--~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~V~~~~vl~ 248 (304)
||.|.++..+.+.. ....++.+|.+++.++.+++ ..+.++.+|..+.. ..-...|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----------~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~--- 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----------EGVEVIYGDATDPEVLERAGIEKADAVVILT--- 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----------TTSEEEES-TTSHHHHHHTTGGCESEEEEES---
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----------cccccccccchhhhHHhhcCccccCEEEEcc---
Confidence 45566665555431 12389999999999888877 45789999997742 2234677777653
Q ss_pred cCCCHH--HHHHHHHHhcccCcEEEEEEeC
Q 021975 249 CWPSPS--NAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 249 h~~d~~--~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
++.. ..+....+.+.|...++.....
T Consensus 71 --~~d~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 71 --DDDEENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp --SSHHHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred --CCHHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 2333 2445566677788787776643
No 395
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=87.54 E-value=0.54 Score=27.25 Aligned_cols=27 Identities=19% Similarity=0.496 Sum_probs=18.3
Q ss_pred eeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
+.|..|+........ ..++|+.||+.-
T Consensus 1 Y~C~~Cg~~~~~~~~----------~~irC~~CG~RI 27 (32)
T PF03604_consen 1 YICGECGAEVELKPG----------DPIRCPECGHRI 27 (32)
T ss_dssp EBESSSSSSE-BSTS----------STSSBSSSS-SE
T ss_pred CCCCcCCCeeEcCCC----------CcEECCcCCCeE
Confidence 368899998764332 568999999864
No 396
>PRK12495 hypothetical protein; Provisional
Probab=87.43 E-value=0.33 Score=41.06 Aligned_cols=31 Identities=19% Similarity=0.466 Sum_probs=25.2
Q ss_pred cCCeeeccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 021975 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (304)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 98 (304)
.|..+.|+.||.++.... +..+|+.|+..+.
T Consensus 39 tmsa~hC~~CG~PIpa~p-----------G~~~Cp~CQ~~~~ 69 (226)
T PRK12495 39 TMTNAHCDECGDPIFRHD-----------GQEFCPTCQQPVT 69 (226)
T ss_pred ccchhhcccccCcccCCC-----------CeeECCCCCCccc
Confidence 566788999999997532 7899999998764
No 397
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=87.38 E-value=0.33 Score=45.41 Aligned_cols=33 Identities=27% Similarity=0.582 Sum_probs=25.6
Q ss_pred CeeeccCCCccccccCCCCccccccccCceeeCCCCccccCCC
Q 021975 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (304)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~ 101 (304)
..-.||.||..+...+. +.++|++||..++...
T Consensus 349 ~~p~Cp~Cg~~m~S~G~----------~g~rC~kCg~~~~~~~ 381 (421)
T COG1571 349 VNPVCPRCGGRMKSAGR----------NGFRCKKCGTRARETL 381 (421)
T ss_pred cCCCCCccCCchhhcCC----------CCcccccccccCCccc
Confidence 44589999999866553 4899999999885553
No 398
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.21 E-value=14 Score=31.36 Aligned_cols=104 Identities=19% Similarity=0.189 Sum_probs=60.6
Q ss_pred CCCeEEEEcCCcc--H-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC---
Q 021975 166 QGGLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 234 (304)
Q Consensus 166 ~~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 234 (304)
++++||-.|++.| . ....+.+.|. +|++++-++...+...+..... .++.++.+|+.+.. +.
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNENKLKRMKKTLSKY-----GNIHYVVGDVSSTESARNVIEKAA 76 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc-----CCeEEEECCCCCHHHHHHHHHHHH
Confidence 3568999998643 2 2344445555 9999999887666554433321 35788889987632 00
Q ss_pred --CCccceEEecchhccC---CC--------------HHHHHHHHHHhcccCcEEEEEEeC
Q 021975 235 --SGFVDAVHAGAALHCW---PS--------------PSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 235 --~~~fD~V~~~~vl~h~---~d--------------~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
-+.+|.++........ .+ +..+++.+.+.++.+|.+++....
T Consensus 77 ~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~ 137 (238)
T PRK05786 77 KVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSM 137 (238)
T ss_pred HHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 1346777765432110 01 112356666777788887776643
No 399
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=87.10 E-value=11 Score=33.91 Aligned_cols=97 Identities=19% Similarity=0.152 Sum_probs=59.3
Q ss_pred cccCCCeEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-CCCCccce
Q 021975 163 KSAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDA 240 (304)
Q Consensus 163 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~ 240 (304)
...++.+||-.|+| .|..+..+++.. +.++++++.+++..+.+++. . .. .++...-.... -..+.+|+
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~-g-------~~-~~~~~~~~~~~~~~~~~~d~ 228 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKL-G-------AD-EVVDSGAELDEQAAAGGADV 228 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHh-C-------Cc-EEeccCCcchHHhccCCCCE
Confidence 44567788888987 576666666663 34899999999888777542 1 11 11111100000 01245888
Q ss_pred EEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
++.... . ...+.++.+.|+++|.++....
T Consensus 229 vi~~~~-----~-~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 229 ILVTVV-----S-GAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred EEECCC-----c-HHHHHHHHHhcccCCEEEEECC
Confidence 876421 1 2357888999999999887653
No 400
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.04 E-value=0.35 Score=33.83 Aligned_cols=36 Identities=22% Similarity=0.564 Sum_probs=24.3
Q ss_pred eeeccCCCccccccCCCCccccccccCceeeCCCCccccCCCC
Q 021975 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN 102 (304)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g 102 (304)
++.||+|+-.+.-..-.++ ..=.|+.|+-++..+..
T Consensus 1 ~llCP~C~v~l~~~~rs~v-------EiD~CPrCrGVWLDrGE 36 (88)
T COG3809 1 MLLCPICGVELVMSVRSGV-------EIDYCPRCRGVWLDRGE 36 (88)
T ss_pred CcccCcCCceeeeeeecCc-------eeeeCCccccEeecchh
Confidence 4689999998855442211 34579999988866543
No 401
>PRK13699 putative methylase; Provisional
Probab=86.93 E-value=0.46 Score=41.14 Aligned_cols=52 Identities=15% Similarity=0.214 Sum_probs=32.7
Q ss_pred EEEEccCCCC--CCCCCccceEEecchh----ccC-C----------CHHHHHHHHHHhcccCcEEEEE
Q 021975 222 ALVRADVCRL--PFASGFVDAVHAGAAL----HCW-P----------SPSNAVAEISRILRSGGVFVGT 273 (304)
Q Consensus 222 ~~~~~d~~~l--p~~~~~fD~V~~~~vl----~h~-~----------d~~~~l~~~~r~LkpgG~lvi~ 273 (304)
+++.+|..+. .++++++|+|+..--. .+. . -....+.++.|+|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 4556666443 3567778888775211 100 0 0136789999999999988764
No 402
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=86.84 E-value=8.9 Score=34.73 Aligned_cols=98 Identities=14% Similarity=0.083 Sum_probs=58.5
Q ss_pred hcccCCCeEEEEcCCc-cHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC---C-C-CC
Q 021975 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---L-P-FA 234 (304)
Q Consensus 162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~---l-p-~~ 234 (304)
....++.+||=+|+|. |.++..+++.. +.+ ++++|.+++..+.+++. + .. .++...-.+ + . ..
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~----g----a~-~~i~~~~~~~~~~~~~~~ 228 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKAL----G----AD-FVINSGQDDVQEIRELTS 228 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh----C----CC-EEEcCCcchHHHHHHHhC
Confidence 3445678888888763 55556666653 235 99999999888777652 1 11 111111000 0 0 11
Q ss_pred CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
...+|+|+-.- .. ...+....+.|+++|++++...
T Consensus 229 ~~~~d~vid~~-----g~-~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 229 GAGADVAIECS-----GN-TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CCCCCEEEECC-----CC-HHHHHHHHHHhhcCCEEEEEcC
Confidence 23689888542 12 2346777889999999987654
No 403
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=86.36 E-value=13 Score=34.08 Aligned_cols=97 Identities=11% Similarity=0.038 Sum_probs=60.5
Q ss_pred cccCCCeEEEEcC--CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc----cCCC-C-CCC
Q 021975 163 KSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA----DVCR-L-PFA 234 (304)
Q Consensus 163 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~----d~~~-l-p~~ 234 (304)
...++.+||=.|+ |.|..+.++++.. +.++++++.+++..+.+++.+. .. .++.. +... + ...
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lG-------a~-~vi~~~~~~~~~~~i~~~~ 225 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLG-------FD-EAFNYKEEPDLDAALKRYF 225 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcC-------CC-EEEECCCcccHHHHHHHHC
Confidence 3456889999997 3677877787773 3489999998887777653221 11 12211 1100 0 011
Q ss_pred CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
.+.+|+|+-.- . ...+....+.|++||++++...
T Consensus 226 ~~gvD~v~d~v-----G--~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 226 PEGIDIYFDNV-----G--GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred CCCcEEEEECC-----C--HHHHHHHHHHhccCCEEEEECc
Confidence 23588887532 2 2367888999999999887653
No 404
>PRK07806 short chain dehydrogenase; Provisional
Probab=86.27 E-value=14 Score=31.62 Aligned_cols=102 Identities=18% Similarity=0.109 Sum_probs=56.8
Q ss_pred CCeEEEEcCCcc--H-HHHHHHHhCCCCeEEEEeCCH-HHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC---
Q 021975 167 GGLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSE-NMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 234 (304)
Q Consensus 167 ~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~giD~s~-~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 234 (304)
++++|-.|+..| . +...|.+.+. +|++++-+. ...+.....++..+ .++.++.+|+.+.. +.
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~~~~~~~ 79 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG----GRASAVGADLTDEESVAALMDTAR 79 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC----CceEEEEcCCCCHHHHHHHHHHHH
Confidence 568888886433 2 3344445555 888887654 23333333333322 46788889987632 00
Q ss_pred --CCccceEEecchhccCC-------------CHHHHHHHHHHhcccCcEEEEEE
Q 021975 235 --SGFVDAVHAGAALHCWP-------------SPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 235 --~~~fD~V~~~~vl~h~~-------------d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
-+.+|+|+......... -+..+++.+.+.++.+|.+++..
T Consensus 80 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 80 EEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred HhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 13578877654322110 12356677777777677766554
No 405
>PLN02740 Alcohol dehydrogenase-like
Probab=86.27 E-value=8.6 Score=35.71 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=59.6
Q ss_pred cccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC--C-----CCC
Q 021975 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--L-----PFA 234 (304)
Q Consensus 163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~--l-----p~~ 234 (304)
...++.+||=+|+|. |..+..+++.....+|+++|.+++..+.+++. + .. .++...-.+ . .+.
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----G----a~-~~i~~~~~~~~~~~~v~~~~ 265 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----G----IT-DFINPKDSDKPVHERIREMT 265 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----C----Cc-EEEecccccchHHHHHHHHh
Confidence 345678999999874 55666666664223699999999888888652 1 11 122111100 0 011
Q ss_pred CCccceEEecchhccCCCHHHHHHHHHHhcccC-cEEEEEEeC
Q 021975 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTFL 276 (304)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~lvi~~~~ 276 (304)
.+.+|+|+-.- ..+ ..+......+++| |++++....
T Consensus 266 ~~g~dvvid~~-----G~~-~~~~~a~~~~~~g~G~~v~~G~~ 302 (381)
T PLN02740 266 GGGVDYSFECA-----GNV-EVLREAFLSTHDGWGLTVLLGIH 302 (381)
T ss_pred CCCCCEEEECC-----CCh-HHHHHHHHhhhcCCCEEEEEccC
Confidence 22588887643 223 4577788889897 988775543
No 406
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=86.12 E-value=0.54 Score=31.45 Aligned_cols=35 Identities=20% Similarity=0.419 Sum_probs=19.9
Q ss_pred CeeeccCCCccccccCCCCc-cccccccCceeeCCCCc
Q 021975 59 DLFSCPICYEPLIRKGPTGL-TLGAIYRSGFKCRKCDK 95 (304)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~-~~~~i~~~~l~C~~C~~ 95 (304)
++..||.||++-........ ..... -.+.|..||.
T Consensus 2 ~LkPCPFCG~~~~~~~~~~~~~~~~~--~~V~C~~Cga 37 (61)
T PF14354_consen 2 ELKPCPFCGSADVLIRQDEGFDYGMY--YYVECTDCGA 37 (61)
T ss_pred CCcCCCCCCCcceEeecccCCCCCCE--EEEEcCCCCC
Confidence 46789999876544332111 11110 3567999987
No 407
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=86.03 E-value=5.5 Score=32.62 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=63.1
Q ss_pred EcCCccHHHHHHHHhCC-CCeEEEEeCCH--HHHHHHH---HHHHhcCccCCCCeE-EEEccCCCCC----CCCCccceE
Q 021975 173 VSCGSGLFSRKFAKSGT-YSGVVALDFSE--NMLRQCY---DFIKQDNTILTSNLA-LVRADVCRLP----FASGFVDAV 241 (304)
Q Consensus 173 iGcG~G~~~~~l~~~~~-~~~v~giD~s~--~~~~~a~---~~~~~~~~~~~~~i~-~~~~d~~~lp----~~~~~fD~V 241 (304)
||=|.=.|+..|++... ..++++.-.+. ...+... ++++... ..++. ....|+..+. ...+.||.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~---~~g~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR---ELGVTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh---hcCCccccCCCCCcccccccccCCcCCEE
Confidence 56666667788887743 44565554433 2222221 2332221 12222 3345666554 356889999
Q ss_pred EecchhccCC------C---------HHHHHHHHHHhcccCcEEEEEEeCCCCCCccccccc
Q 021975 242 HAGAALHCWP------S---------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV 288 (304)
Q Consensus 242 ~~~~vl~h~~------d---------~~~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~~~~~ 288 (304)
+.++- |+. + ...++..+..+|+++|.+.++-... .+...|....
T Consensus 80 iFNFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~-~py~~W~i~~ 138 (166)
T PF10354_consen 80 IFNFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG-QPYDSWNIEE 138 (166)
T ss_pred EEeCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC-CCCccccHHH
Confidence 98753 443 0 1257889999999999998887655 3345554443
No 408
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=85.84 E-value=0.4 Score=34.82 Aligned_cols=31 Identities=23% Similarity=0.701 Sum_probs=22.2
Q ss_pred CeeeccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 021975 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (304)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 98 (304)
....||.|+..-..... .+.|.|..|+..+.
T Consensus 35 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~A 65 (90)
T PTZ00255 35 AKYFCPFCGKHAVKRQA---------VGIWRCKGCKKTVA 65 (90)
T ss_pred CCccCCCCCCCceeeee---------eEEEEcCCCCCEEe
Confidence 45889999985433221 27899999998763
No 409
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=85.66 E-value=0.47 Score=37.76 Aligned_cols=42 Identities=21% Similarity=0.493 Sum_probs=27.4
Q ss_pred eeccCCCccccccCCCCcc-ccccccCceeeCCCCccccCCCC
Q 021975 61 FSCPICYEPLIRKGPTGLT-LGAIYRSGFKCRKCDKTYSSKDN 102 (304)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~-~~~i~~~~l~C~~C~~~~~~~~g 102 (304)
+.||.|+.+-....+.+.. .+......=.|..||..|..-+-
T Consensus 1 M~CP~C~~~dtkViDSR~~~dg~~IRRRReC~~C~~RFTTyEr 43 (147)
T TIGR00244 1 MHCPFCQHHNTRVLDSRLVEDGQSIRRRRECLECHERFTTFER 43 (147)
T ss_pred CCCCCCCCCCCEeeeccccCCCCeeeecccCCccCCccceeee
Confidence 4799999987665554432 23333345569999999855443
No 410
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=85.63 E-value=0.42 Score=38.02 Aligned_cols=43 Identities=16% Similarity=0.400 Sum_probs=28.0
Q ss_pred eeccCCCccccccCCCCcc-ccccccCceeeCCCCccccCCCCe
Q 021975 61 FSCPICYEPLIRKGPTGLT-LGAIYRSGFKCRKCDKTYSSKDNY 103 (304)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~-~~~i~~~~l~C~~C~~~~~~~~g~ 103 (304)
+.||.|++.-....+.+.. .+......-.|..||..|..-+-+
T Consensus 1 M~CPfC~~~~tkViDSR~~edg~aIRRRReC~~C~~RFTTfE~~ 44 (156)
T COG1327 1 MKCPFCGHEDTKVIDSRPAEEGNAIRRRRECLECGERFTTFERA 44 (156)
T ss_pred CCCCCCCCCCCeeeecccccccchhhhhhcccccccccchhhee
Confidence 4699999987665554432 222333455799999998654433
No 411
>PRK12939 short chain dehydrogenase; Provisional
Probab=85.54 E-value=7.8 Score=33.12 Aligned_cols=74 Identities=16% Similarity=0.137 Sum_probs=46.6
Q ss_pred CCCeEEEEcCCccHHHHH----HHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC--
Q 021975 166 QGGLLVDVSCGSGLFSRK----FAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-- 234 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~----l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-- 234 (304)
+++++|=.|++ |..+.. +.+.+. ++++++-++..++...+.++..+ .++.++.+|+.+.. +.
T Consensus 6 ~~~~vlItGa~-g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~ 78 (250)
T PRK12939 6 AGKRALVTGAA-RGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG----GRAHAIAADLADPASVQRFFDAA 78 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHH
Confidence 35678877763 444433 444565 89999988876665555544332 56889999987632 10
Q ss_pred ---CCccceEEecch
Q 021975 235 ---SGFVDAVHAGAA 246 (304)
Q Consensus 235 ---~~~fD~V~~~~v 246 (304)
-+.+|+|+....
T Consensus 79 ~~~~~~id~vi~~ag 93 (250)
T PRK12939 79 AAALGGLDGLVNNAG 93 (250)
T ss_pred HHHcCCCCEEEECCC
Confidence 046898887654
No 412
>PRK06701 short chain dehydrogenase; Provisional
Probab=85.52 E-value=9.9 Score=33.83 Aligned_cols=104 Identities=17% Similarity=0.228 Sum_probs=59.8
Q ss_pred CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCH-HHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC--
Q 021975 166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSE-NMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-- 234 (304)
Q Consensus 166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~-~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-- 234 (304)
+++++|-.|++.|- ....+++.+. +|+.++.+. ...+...+.++..+ .++.++.+|+.+.. +.
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~i 118 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKEG----VKCLLIPGDVSDEAFCKDAVEET 118 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcC----CeEEEEEccCCCHHHHHHHHHHH
Confidence 35788988875542 3455555665 888888764 23333333333322 46788899986632 11
Q ss_pred ---CCccceEEecchhccC----CC--H--------------HHHHHHHHHhcccCcEEEEEEe
Q 021975 235 ---SGFVDAVHAGAALHCW----PS--P--------------SNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 235 ---~~~fD~V~~~~vl~h~----~d--~--------------~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
-+.+|+|+......+. .+ . ..+++.+.+.++++|.+++..-
T Consensus 119 ~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 119 VRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred HHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 1357988876543221 11 1 1345666677777787776553
No 413
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=85.27 E-value=15 Score=33.02 Aligned_cols=98 Identities=14% Similarity=0.114 Sum_probs=59.9
Q ss_pred cccCCCeEEEEcCCc-cHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC----CCCCC
Q 021975 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASG 236 (304)
Q Consensus 163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~ 236 (304)
...++.+||-+|+|. |..+..+++.. +.+ ++.++.+++..+.+++. + .. .++..+-... .....
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~----g----~~-~~~~~~~~~~~~~~~~~~~ 225 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKKL----G----AT-ETVDPSREDPEAQKEDNPY 225 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHh----C----Ce-EEecCCCCCHHHHHHhcCC
Confidence 345678899998653 55666666664 235 89999998887777542 1 11 2222211110 11235
Q ss_pred ccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
.+|+|+.... ....+.++.+.|+++|.++.....
T Consensus 226 ~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g~~ 259 (334)
T cd08234 226 GFDVVIEATG------VPKTLEQAIEYARRGGTVLVFGVY 259 (334)
T ss_pred CCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEecC
Confidence 6899986421 134688889999999999876543
No 414
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=85.16 E-value=4.1 Score=36.42 Aligned_cols=90 Identities=16% Similarity=0.174 Sum_probs=56.4
Q ss_pred CeEEEEcCCc--cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975 168 GLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (304)
Q Consensus 168 ~~vLDiGcG~--G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (304)
.+|+=+|.|- |.+...+.+.++...++|.|.+...++.+.+ .++..-..+... -......|+|+..-
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----------lgv~d~~~~~~~-~~~~~~aD~Vivav 72 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----------LGVIDELTVAGL-AEAAAEADLVIVAV 72 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----------cCcccccccchh-hhhcccCCEEEEec
Confidence 4677888873 6678888888887778999999988877765 122222111100 11134579888754
Q ss_pred hhccCCCHHHHHHHHHHhcccCcEEE
Q 021975 246 ALHCWPSPSNAVAEISRILRSGGVFV 271 (304)
Q Consensus 246 vl~h~~d~~~~l~~~~r~LkpgG~lv 271 (304)
-+. ....+++++...||+|..+.
T Consensus 73 Pi~---~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 73 PIE---ATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred cHH---HHHHHHHHhcccCCCCCEEE
Confidence 332 23466777777777776554
No 415
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=85.12 E-value=0.71 Score=24.82 Aligned_cols=9 Identities=33% Similarity=0.992 Sum_probs=6.6
Q ss_pred CceeeCCCC
Q 021975 86 SGFKCRKCD 94 (304)
Q Consensus 86 ~~l~C~~C~ 94 (304)
..+.|++||
T Consensus 15 v~f~CPnCG 23 (24)
T PF07754_consen 15 VPFPCPNCG 23 (24)
T ss_pred ceEeCCCCC
Confidence 467788886
No 416
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=85.09 E-value=0.43 Score=29.26 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=20.1
Q ss_pred eccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 021975 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (304)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~ 98 (304)
.||.|+..+..... +.+ ....|++|+-.+.
T Consensus 1 ~CP~C~~~l~~~~~-----~~~--~id~C~~C~G~W~ 30 (41)
T PF13453_consen 1 KCPRCGTELEPVRL-----GDV--EIDVCPSCGGIWF 30 (41)
T ss_pred CcCCCCcccceEEE-----CCE--EEEECCCCCeEEc
Confidence 49999998754332 111 4678999986653
No 417
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=85.01 E-value=12 Score=32.64 Aligned_cols=95 Identities=19% Similarity=0.194 Sum_probs=57.9
Q ss_pred cccCCCeEEEEcCCc-cHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccce
Q 021975 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 240 (304)
Q Consensus 163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 240 (304)
...++.+||-.|+|. |..+..+++.. +.+ +++++.+++..+.+++.- . ...+ +... .. ......+|+
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~g-~-----~~~~--~~~~-~~-~~~~~~~d~ 162 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEALG-P-----ADPV--AADT-AD-EIGGRGADV 162 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHcC-C-----Cccc--cccc-hh-hhcCCCCCE
Confidence 345677888888765 66666666653 236 999999988877666521 0 0111 1100 00 012346898
Q ss_pred EEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
|+.... ....+.+..+.|+++|.++...
T Consensus 163 vl~~~~------~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 163 VIEASG------SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEEccC------ChHHHHHHHHHhcCCcEEEEEe
Confidence 886421 1235788899999999988654
No 418
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=84.99 E-value=0.42 Score=34.78 Aligned_cols=30 Identities=27% Similarity=0.881 Sum_probs=21.8
Q ss_pred CeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
....||.|+..-..... .+.|.|..|+..+
T Consensus 34 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~ 63 (91)
T TIGR00280 34 AKYVCPFCGKKTVKRGS---------TGIWTCRKCGAKF 63 (91)
T ss_pred cCccCCCCCCCceEEEe---------eEEEEcCCCCCEE
Confidence 45889999975433221 2789999999876
No 419
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=84.97 E-value=0.56 Score=38.93 Aligned_cols=37 Identities=14% Similarity=0.382 Sum_probs=21.6
Q ss_pred eeeccCCCccccccCCCCccccccccCceeeCCCCccccC
Q 021975 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (304)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~ 99 (304)
.+.||.|++.-....- +. ....+..++|..||++++.
T Consensus 6 y~~Cp~Cg~eev~hEV--ik-~~g~~~lvrC~eCG~V~~~ 42 (201)
T COG1326 6 YIECPSCGSEEVSHEV--IK-ERGREPLVRCEECGTVHPA 42 (201)
T ss_pred EEECCCCCcchhhHHH--HH-hcCCceEEEccCCCcEeec
Confidence 4789999953221000 00 0112257899999999844
No 420
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=84.86 E-value=11 Score=34.10 Aligned_cols=115 Identities=11% Similarity=0.096 Sum_probs=77.7
Q ss_pred HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---
Q 021975 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--- 232 (304)
Q Consensus 157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--- 232 (304)
.+...+... ...|+-+|||-= ++...-.++ ...|+-+|. |+.++.=++.++..+.......+++..|+.+-.
T Consensus 84 ~~~~~~~~g-~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~ 159 (297)
T COG3315 84 FVRAALDAG-IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQ 159 (297)
T ss_pred HHHHHHHhc-ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHH
Confidence 344444443 578999999853 333333333 357777774 777777777887776545558999999997422
Q ss_pred -C-----CCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEe
Q 021975 233 -F-----ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 233 -~-----~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
+ ....--++++-+++-+++.. .++|+.|...+.||-.++....
T Consensus 160 ~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 160 ALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred HHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 2 23334478888888888744 4789999999988877776653
No 421
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=84.82 E-value=0.52 Score=40.18 Aligned_cols=93 Identities=13% Similarity=0.079 Sum_probs=66.4
Q ss_pred HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-
Q 021975 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP- 232 (304)
Q Consensus 154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp- 232 (304)
+.+.+.+++.+.++...+|.--|.|..+..+.++.+..+++++|.+|-+-+.|+.-..+.- .+.+.-+.+.+..++
T Consensus 31 m~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el~---~~~l~a~Lg~Fs~~~~ 107 (303)
T KOG2782|consen 31 MLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDELM---HPTLKAVLGNFSYIKS 107 (303)
T ss_pred ehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhhc---chhHHHHHhhhHHHHH
Confidence 3456677888889999999999999999999999888899999999988888776553221 222333333333322
Q ss_pred ------CCCCccceEEecchhcc
Q 021975 233 ------FASGFVDAVHAGAALHC 249 (304)
Q Consensus 233 ------~~~~~fD~V~~~~vl~h 249 (304)
+.+.++|.|++......
T Consensus 108 l~~~~gl~~~~vDGiLmDlGcSS 130 (303)
T KOG2782|consen 108 LIADTGLLDVGVDGILMDLGCSS 130 (303)
T ss_pred HHHHhCCCcCCcceEEeecCccc
Confidence 45678888888655433
No 422
>PLN02827 Alcohol dehydrogenase-like
Probab=84.80 E-value=13 Score=34.56 Aligned_cols=96 Identities=16% Similarity=0.213 Sum_probs=56.5
Q ss_pred ccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc-----CCC-C-CCCC
Q 021975 164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-----VCR-L-PFAS 235 (304)
Q Consensus 164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d-----~~~-l-p~~~ 235 (304)
..++.+||-.|+|. |.++..+++......++++|.++...+.+++. + .. .++... ... + ....
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----G----a~-~~i~~~~~~~~~~~~v~~~~~ 261 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----G----VT-DFINPNDLSEPIQQVIKRMTG 261 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C----Cc-EEEcccccchHHHHHHHHHhC
Confidence 45678999998764 55666666653223689999999887777552 1 11 112111 000 0 0112
Q ss_pred CccceEEecchhccCCCHHHHHHHHHHhcccC-cEEEEEE
Q 021975 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTT 274 (304)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~lvi~~ 274 (304)
+.+|+|+-.- ..+ ..+....+.|++| |++++..
T Consensus 262 ~g~d~vid~~-----G~~-~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 262 GGADYSFECV-----GDT-GIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCCCEEEECC-----CCh-HHHHHHHHhhccCCCEEEEEC
Confidence 2588877532 222 3467788899998 9987654
No 423
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=84.73 E-value=1.7 Score=39.12 Aligned_cols=66 Identities=18% Similarity=0.316 Sum_probs=51.0
Q ss_pred eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---CCCCccceEEecc
Q 021975 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVHAGA 245 (304)
Q Consensus 169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~V~~~~ 245 (304)
+++|+=||.|.+..-+...| ..-+.++|+++.+++.-+.+. . ....+|+..+. ++. .+|+++...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~--------~--~~~~~Di~~~~~~~l~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANF--------P--EVICGDITEIDPSDLPK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHH--------T--EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhcc--------c--ccccccccccccccccc-cceEEEecc
Confidence 68999999999999999998 347889999999988888864 2 67888987764 443 599999864
Q ss_pred h
Q 021975 246 A 246 (304)
Q Consensus 246 v 246 (304)
-
T Consensus 70 P 70 (335)
T PF00145_consen 70 P 70 (335)
T ss_dssp -
T ss_pred C
Confidence 4
No 424
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=84.66 E-value=0.41 Score=38.43 Aligned_cols=38 Identities=18% Similarity=0.524 Sum_probs=24.4
Q ss_pred cCCeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
.-..+.||.|+............ + ..+.+.|+.||..-
T Consensus 96 ~~~~Y~Cp~C~~~y~~~ea~~~~-d--~~~~f~Cp~Cg~~l 133 (147)
T smart00531 96 NNAYYKCPNCQSKYTFLEANQLL-D--MDGTFTCPRCGEEL 133 (147)
T ss_pred CCcEEECcCCCCEeeHHHHHHhc-C--CCCcEECCCCCCEE
Confidence 34579999999876553322111 1 23569999999753
No 425
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=84.63 E-value=21 Score=33.39 Aligned_cols=104 Identities=15% Similarity=0.182 Sum_probs=59.9
Q ss_pred ccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc---cCCC-CC--CCCC
Q 021975 164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA---DVCR-LP--FASG 236 (304)
Q Consensus 164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~---d~~~-lp--~~~~ 236 (304)
..++.+||=.|+|. |..+..+++......++.+|.++..++.+++. + .. .+... +... +. ....
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----G----a~-~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----G----CE-TVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----C----Ce-EEecCCcccHHHHHHHHcCCC
Confidence 34577777788864 66666666653223466778888888887762 1 11 12111 1100 00 1123
Q ss_pred ccceEEecchhcc--------CCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 237 FVDAVHAGAALHC--------WPSPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 237 ~fD~V~~~~vl~h--------~~d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
.+|+|+-.-.-.. -.++...+++..+++++||++++.-..
T Consensus 254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 254 EVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred CCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 5888875332110 012235789999999999999886654
No 426
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=84.57 E-value=0.71 Score=26.86 Aligned_cols=24 Identities=21% Similarity=0.634 Sum_probs=16.7
Q ss_pred eeccCCCccccccCCCCccccccccCceeeCCCCc
Q 021975 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (304)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~ 95 (304)
.+|++||--..... ..++|+.||.
T Consensus 2 ~~C~~CGy~y~~~~-----------~~~~CP~Cg~ 25 (33)
T cd00350 2 YVCPVCGYIYDGEE-----------APWVCPVCGA 25 (33)
T ss_pred EECCCCCCEECCCc-----------CCCcCcCCCC
Confidence 57899987543322 4678999986
No 427
>PRK05854 short chain dehydrogenase; Provisional
Probab=84.52 E-value=20 Score=32.28 Aligned_cols=78 Identities=18% Similarity=0.199 Sum_probs=51.0
Q ss_pred CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----------
Q 021975 166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------- 232 (304)
Q Consensus 166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------- 232 (304)
.++++|=.|++.|- ....|++.|. +|+.+.-+.+..+.+.+.+.... ...++.++.+|+.+..
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~--~~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAV--PDAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CCCceEEEEecCCCHHHHHHHHHHHH
Confidence 46788888876653 3455556665 99999988876666655554332 2346888999987742
Q ss_pred CCCCccceEEecchh
Q 021975 233 FASGFVDAVHAGAAL 247 (304)
Q Consensus 233 ~~~~~fD~V~~~~vl 247 (304)
-..+..|+++.+..+
T Consensus 89 ~~~~~iD~li~nAG~ 103 (313)
T PRK05854 89 AEGRPIHLLINNAGV 103 (313)
T ss_pred HhCCCccEEEECCcc
Confidence 112468998887554
No 428
>PRK07109 short chain dehydrogenase; Provisional
Probab=84.38 E-value=18 Score=32.94 Aligned_cols=76 Identities=25% Similarity=0.260 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-C--------
Q 021975 166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F-------- 233 (304)
Q Consensus 166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~-------- 233 (304)
++++||=.|++.|- ....|++.|. +|+.++-++..++...+.++..+ .++.++.+|+.+.. .
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g----~~~~~v~~Dv~d~~~v~~~~~~~~ 80 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAG----GEALAVVADVADAEAVQAAADRAE 80 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC----CcEEEEEecCCCHHHHHHHHHHHH
Confidence 35678888875542 3344556665 89999998887776666555443 56888899987632 0
Q ss_pred -CCCccceEEecchh
Q 021975 234 -ASGFVDAVHAGAAL 247 (304)
Q Consensus 234 -~~~~fD~V~~~~vl 247 (304)
.-+.+|+++.+...
T Consensus 81 ~~~g~iD~lInnAg~ 95 (334)
T PRK07109 81 EELGPIDTWVNNAMV 95 (334)
T ss_pred HHCCCCCEEEECCCc
Confidence 01468988876543
No 429
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=84.31 E-value=0.47 Score=30.12 Aligned_cols=40 Identities=15% Similarity=0.286 Sum_probs=24.3
Q ss_pred eccCCCccccccCCCCccccccccCceeeCC--CCccccCCCC
Q 021975 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRK--CDKTYSSKDN 102 (304)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~--C~~~~~~~~g 102 (304)
.||.||+......-. .-.+...+....|.+ ||+.|.....
T Consensus 1 ~CP~Cg~~a~ir~S~-~~s~~~~~~Y~qC~N~~Cg~tfv~~~~ 42 (47)
T PF04606_consen 1 RCPHCGSKARIRTSR-QLSPLTRELYCQCTNPECGHTFVANLE 42 (47)
T ss_pred CcCCCCCeeEEEEch-hhCcceEEEEEEECCCcCCCEEEEEEE
Confidence 499999976443211 112333445778987 9998855433
No 430
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=84.18 E-value=9.2 Score=35.26 Aligned_cols=96 Identities=17% Similarity=0.177 Sum_probs=53.2
Q ss_pred cCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEE-ccCCCCCCCCCccceEE
Q 021975 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRLPFASGFVDAVH 242 (304)
Q Consensus 165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~~~lp~~~~~fD~V~ 242 (304)
.++.+||-.|+|. |.++..+++.. +.++++++.+......+.+. .+ .. .++. .+...+.-..+.+|+|+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~---~G----a~-~vi~~~~~~~~~~~~~~~D~vi 252 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINR---LG----AD-SFLVSTDPEKMKAAIGTMDYII 252 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHh---CC----Cc-EEEcCCCHHHHHhhcCCCCEEE
Confidence 4577888899874 66666666663 34888888776543222221 11 11 1111 11001100012478777
Q ss_pred ecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
-.- ..+ ..+.+..+.|++||+++....
T Consensus 253 d~~-----g~~-~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 253 DTV-----SAV-HALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred ECC-----CCH-HHHHHHHHHhcCCcEEEEeCC
Confidence 532 222 357888999999999887653
No 431
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=84.01 E-value=0.74 Score=34.23 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=20.8
Q ss_pred CeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
..+.||.|+....... -+. -.....|+.||..+
T Consensus 20 t~f~CP~Cge~~v~v~-~~k-----~~~h~~C~~CG~y~ 52 (99)
T PRK14892 20 KIFECPRCGKVSISVK-IKK-----NIAIITCGNCGLYT 52 (99)
T ss_pred cEeECCCCCCeEeeee-cCC-----CcceEECCCCCCcc
Confidence 5799999996322111 000 12578999999876
No 432
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=83.84 E-value=0.48 Score=34.41 Aligned_cols=30 Identities=27% Similarity=0.800 Sum_probs=21.7
Q ss_pred CeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
....||.|+..-..... .+.|.|..|+..+
T Consensus 35 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~ 64 (90)
T PRK03976 35 AKHVCPVCGRPKVKRVG---------TGIWECRKCGAKF 64 (90)
T ss_pred cCccCCCCCCCceEEEE---------EEEEEcCCCCCEE
Confidence 45889999876433221 2789999999876
No 433
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=83.66 E-value=20 Score=33.12 Aligned_cols=99 Identities=16% Similarity=0.147 Sum_probs=58.9
Q ss_pred cccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc-CCCC-----CCCC
Q 021975 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-VCRL-----PFAS 235 (304)
Q Consensus 163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d-~~~l-----p~~~ 235 (304)
...++.+||=.|+|. |..+..+++.....+|+++|.++...+.+++. + ....+-..+ -..+ ....
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----G----a~~~i~~~~~~~~~~~~v~~~~~ 253 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----G----ATDCVNPNDYDKPIQEVIVEITD 253 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----C----CCeEEcccccchhHHHHHHHHhC
Confidence 345678899999864 66666677664223799999999988888652 1 111111110 0000 0112
Q ss_pred CccceEEecchhccCCCHHHHHHHHHHhcccC-cEEEEEEe
Q 021975 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 275 (304)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~lvi~~~ 275 (304)
+.+|+|+-.- .. ...+.+..+.+++| |++++...
T Consensus 254 ~g~d~vid~~-----G~-~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 254 GGVDYSFECI-----GN-VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CCCCEEEECC-----CC-HHHHHHHHHHhhcCCCeEEEEec
Confidence 3578776532 22 23577788899886 98887654
No 434
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=83.59 E-value=18 Score=29.52 Aligned_cols=108 Identities=17% Similarity=0.149 Sum_probs=62.3
Q ss_pred HHHHHHHHhhcc--cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975 153 EEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (304)
Q Consensus 153 ~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (304)
+..+.+.+.+.. ....+|+-|||=+-.....- ...+..+++.+|++...... + .+ .|+.=|...
T Consensus 10 ~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~--------~----~~-~F~fyD~~~ 75 (162)
T PF10237_consen 10 ETAEFLARELLDGALDDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQF--------G----GD-EFVFYDYNE 75 (162)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhc--------C----Cc-ceEECCCCC
Confidence 333444444433 34679999999876544333 13345699999998754321 1 22 344445533
Q ss_pred ---CC--CCCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCC
Q 021975 231 ---LP--FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 231 ---lp--~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+| + .++||+|++.--+ +.+. ..+...+.-++|+++.+++.+...
T Consensus 76 p~~~~~~l-~~~~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~Tg~~ 126 (162)
T PF10237_consen 76 PEELPEEL-KGKFDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILCTGEE 126 (162)
T ss_pred hhhhhhhc-CCCceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence 22 3 5799999995333 1111 133455555668889999888543
No 435
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=83.49 E-value=16 Score=33.24 Aligned_cols=98 Identities=13% Similarity=0.105 Sum_probs=57.0
Q ss_pred ccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC---C--CCCCCc
Q 021975 164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---L--PFASGF 237 (304)
Q Consensus 164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~---l--p~~~~~ 237 (304)
..++.+||=.|+|. |..+..+++......+++++.+++..+.+++. + .. .++..+-.. + ......
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----G----a~-~~i~~~~~~~~~~~~~~~~~~ 228 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL----G----AM-QTFNSREMSAPQIQSVLRELR 228 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C----Cc-eEecCcccCHHHHHHHhcCCC
Confidence 34577888888864 55666666664222478999999887777541 1 11 111111000 0 011235
Q ss_pred cc-eEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 238 VD-AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 238 fD-~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
+| +|+- .+.. ...+.+..+.|++||++++....
T Consensus 229 ~d~~v~d-----~~G~-~~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 229 FDQLILE-----TAGV-PQTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred CCeEEEE-----CCCC-HHHHHHHHHHhhcCCEEEEEccC
Confidence 67 5443 2222 34678889999999999887543
No 436
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=83.40 E-value=0.92 Score=42.45 Aligned_cols=69 Identities=25% Similarity=0.338 Sum_probs=54.2
Q ss_pred HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCC-eEEEEccCC
Q 021975 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN-LALVRADVC 229 (304)
Q Consensus 155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~-i~~~~~d~~ 229 (304)
-+.+..+++ ++..|-|+-||.|.+..-++.++. .|++-|.+++++++.+.+++.+. ..+. +..+..|+.
T Consensus 240 herlsg~fk--~gevv~D~FaGvGPfa~Pa~kK~c--rV~aNDLNpesik~Lk~ni~lNk--v~~~~iei~Nmda~ 309 (495)
T KOG2078|consen 240 HERLSGLFK--PGEVVCDVFAGVGPFALPAAKKGC--RVYANDLNPESIKWLKANIKLNK--VDPSAIEIFNMDAK 309 (495)
T ss_pred HHHHhhccC--CcchhhhhhcCcCccccchhhcCc--EEEecCCCHHHHHHHHHhccccc--cchhheeeecccHH
Confidence 344445443 478999999999999999999875 99999999999999999988776 3333 777766653
No 437
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=83.36 E-value=0.63 Score=34.07 Aligned_cols=35 Identities=26% Similarity=0.609 Sum_probs=26.4
Q ss_pred eeeccCCCccccccCCCCccccccccCceeeCCCCccccCCC
Q 021975 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (304)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~ 101 (304)
++-||.||.-|...... . -..+.|+.|...+++..
T Consensus 1 m~FCP~Cgn~Live~g~------~-~~rf~C~tCpY~~~I~~ 35 (105)
T KOG2906|consen 1 MLFCPTCGNMLIVESGE------S-CNRFSCRTCPYVFPISR 35 (105)
T ss_pred CcccCCCCCEEEEecCC------e-EeeEEcCCCCceeeEee
Confidence 46799999988775532 1 25789999999987774
No 438
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=83.05 E-value=0.77 Score=37.50 Aligned_cols=25 Identities=20% Similarity=0.518 Sum_probs=20.4
Q ss_pred eeeccCCCccccccCCCCccccccccCceeeCCCCcc
Q 021975 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (304)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 96 (304)
.++||+||-.... . ..-+||.||+.
T Consensus 134 ~~vC~vCGy~~~g-e-----------~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEG-E-----------APEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccC-C-----------CCCcCCCCCCh
Confidence 7999999987755 3 46799999974
No 439
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=82.99 E-value=2.9 Score=38.94 Aligned_cols=102 Identities=17% Similarity=0.150 Sum_probs=55.1
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975 166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (304)
Q Consensus 166 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (304)
++.+|+=+|+|. |......+... +.+|+.+|.++...+.+...+. ..+.....+...+.-.-..+|+|+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g-------~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFG-------GRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcC-------ceeEeccCCHHHHHHHHccCCEEEEc
Confidence 456799999984 55555555442 3489999999877665544221 11111111111111001357999875
Q ss_pred chhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 245 AALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 245 ~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
-.+.-...|.-+-+++.+.+|+|++++-...
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEec
Confidence 3221111232233666777899988775443
No 440
>COG1594 RPB9 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
Probab=82.92 E-value=0.9 Score=34.74 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=27.3
Q ss_pred cccCcCCcCCeeeccCCCccc-cccCCCCccccccccCceeeCCCCccc
Q 021975 50 RNQTLELEGDLFSCPICYEPL-IRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 50 ~~~~~~~~~~~l~CP~C~~~l-~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
+++..........||.||..- .....+.-..++-+...++|..||+.|
T Consensus 62 ~~~~~~~~~~~~~CpkCg~~ea~y~~~QtRsaDEp~T~Fy~C~~Cg~~w 110 (113)
T COG1594 62 TQGAKTLPTAKEKCPKCGNKEAYYWQLQTRSADEPETRFYKCTRCGYRW 110 (113)
T ss_pred ccCccccccccccCCCCCCceeEEEeeehhccCCCceEEEEecccCCEe
Confidence 344444444467899999941 111111112233344679999999986
No 441
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=82.79 E-value=21 Score=32.84 Aligned_cols=103 Identities=18% Similarity=0.196 Sum_probs=65.0
Q ss_pred hhcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc----CCC--CCC
Q 021975 161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD----VCR--LPF 233 (304)
Q Consensus 161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d----~~~--lp~ 233 (304)
..+..++.+|.-+|||. |.....-++......++++|+++.-++.|++.-. .+++... +.+ ...
T Consensus 180 ta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGA---------T~~vn~~~~~~vv~~i~~~ 250 (366)
T COG1062 180 TAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGA---------THFVNPKEVDDVVEAIVEL 250 (366)
T ss_pred cccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCC---------ceeecchhhhhHHHHHHHh
Confidence 34556788999999986 6555555554335699999999999999988322 2233221 100 011
Q ss_pred CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
-++..|.++ +..-+.. .++.....+.++|..++.-....
T Consensus 251 T~gG~d~~~-----e~~G~~~-~~~~al~~~~~~G~~v~iGv~~~ 289 (366)
T COG1062 251 TDGGADYAF-----ECVGNVE-VMRQALEATHRGGTSVIIGVAGA 289 (366)
T ss_pred cCCCCCEEE-----EccCCHH-HHHHHHHHHhcCCeEEEEecCCC
Confidence 233455553 3333444 67888888888999888776553
No 442
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=82.79 E-value=0.76 Score=38.05 Aligned_cols=26 Identities=38% Similarity=0.898 Sum_probs=22.1
Q ss_pred eeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
-.|+.|+.+|.... ..+.|++||+.-
T Consensus 150 A~CsrC~~~L~~~~-----------~~l~Cp~Cg~tE 175 (188)
T COG1096 150 ARCSRCRAPLVKKG-----------NMLKCPNCGNTE 175 (188)
T ss_pred EEccCCCcceEEcC-----------cEEECCCCCCEE
Confidence 57999999998854 689999999864
No 443
>PRK08339 short chain dehydrogenase; Provisional
Probab=82.70 E-value=28 Score=30.26 Aligned_cols=77 Identities=21% Similarity=0.340 Sum_probs=50.8
Q ss_pred CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----C----
Q 021975 166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F---- 233 (304)
Q Consensus 166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~---- 233 (304)
.++++|-.|++.|- ....|++.|. +|+.++.++..++...+.+.... ..++.++.+|+.+.. +
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES---NVDVSYIVADLTKREDLERTVKELK 81 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc---CCceEEEEecCCCHHHHHHHHHHHH
Confidence 35688888876652 4556666666 89999998877766665554321 246888899987642 1
Q ss_pred CCCccceEEecchh
Q 021975 234 ASGFVDAVHAGAAL 247 (304)
Q Consensus 234 ~~~~fD~V~~~~vl 247 (304)
.-+.+|+++.+...
T Consensus 82 ~~g~iD~lv~nag~ 95 (263)
T PRK08339 82 NIGEPDIFFFSTGG 95 (263)
T ss_pred hhCCCcEEEECCCC
Confidence 11468888876543
No 444
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=82.66 E-value=1.5 Score=28.97 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=25.3
Q ss_pred CCcCCeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 55 ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 55 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
.....++.|-.|++.+....- ..++|..||+..
T Consensus 15 r~~~miYiCgdC~~en~lk~~----------D~irCReCG~RI 47 (62)
T KOG3507|consen 15 RTATMIYICGDCGQENTLKRG----------DVIRCRECGYRI 47 (62)
T ss_pred CcccEEEEeccccccccccCC----------CcEehhhcchHH
Confidence 335567999999998866442 589999999864
No 445
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=82.47 E-value=1.1 Score=29.67 Aligned_cols=36 Identities=25% Similarity=0.485 Sum_probs=19.7
Q ss_pred cCCeeeccCCCccccccCCCCccccccccCceeeCCCCcc
Q 021975 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (304)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 96 (304)
....|.||.||......-.. -.-....++|++||..
T Consensus 24 ~~v~F~CPnCGe~~I~Rc~~----CRk~g~~Y~Cp~CGF~ 59 (61)
T COG2888 24 TAVKFPCPNCGEVEIYRCAK----CRKLGNPYRCPKCGFE 59 (61)
T ss_pred ceeEeeCCCCCceeeehhhh----HHHcCCceECCCcCcc
Confidence 34568899999654321100 0001157888888753
No 446
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=82.47 E-value=0.85 Score=31.30 Aligned_cols=30 Identities=20% Similarity=0.470 Sum_probs=21.5
Q ss_pred CeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
..-.||.||........ ...+.|+.||...
T Consensus 27 TSq~C~~CG~~~~~~~~---------~r~~~C~~Cg~~~ 56 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRS---------GRVFTCPNCGFEM 56 (69)
T ss_pred CccCccCcccccccccc---------cceEEcCCCCCEE
Confidence 34569999998755111 1689999999764
No 447
>PRK06181 short chain dehydrogenase; Provisional
Probab=82.40 E-value=15 Score=31.81 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=45.3
Q ss_pred CeEEEEcCCccHHHH----HHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC----
Q 021975 168 GLLVDVSCGSGLFSR----KFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---- 234 (304)
Q Consensus 168 ~~vLDiGcG~G~~~~----~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---- 234 (304)
.++|-.|+.. ..+. .+.+.+. +|++++.++...+...+.++..+ .++.++.+|+.+.. +.
T Consensus 2 ~~vlVtGasg-~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~ 74 (263)
T PRK06181 2 KVVIITGASE-GIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG----GEALVVPTDVSDAEACERLIEAAVA 74 (263)
T ss_pred CEEEEecCCc-HHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4677777543 3333 3444555 99999998876665555444433 46888889987642 00
Q ss_pred -CCccceEEecchh
Q 021975 235 -SGFVDAVHAGAAL 247 (304)
Q Consensus 235 -~~~fD~V~~~~vl 247 (304)
-+..|+|+.....
T Consensus 75 ~~~~id~vi~~ag~ 88 (263)
T PRK06181 75 RFGGIDILVNNAGI 88 (263)
T ss_pred HcCCCCEEEECCCc
Confidence 1357988876543
No 448
>PRK07576 short chain dehydrogenase; Provisional
Probab=82.38 E-value=17 Score=31.68 Aligned_cols=74 Identities=30% Similarity=0.362 Sum_probs=45.8
Q ss_pred CCCeEEEEcCCcc--H-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC---
Q 021975 166 QGGLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 234 (304)
Q Consensus 166 ~~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 234 (304)
+++++|-.|.+.| . ....+++.+. +|++++.+++.++...+.+...+ .++.++..|+.+.. +.
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAG----PEGLGVSADVRDYAAVEAAFAQIA 81 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC----CceEEEECCCCCHHHHHHHHHHHH
Confidence 4678888886433 2 3344555555 89999998876665544444322 45678888886532 10
Q ss_pred --CCccceEEecc
Q 021975 235 --SGFVDAVHAGA 245 (304)
Q Consensus 235 --~~~fD~V~~~~ 245 (304)
.+.+|+++...
T Consensus 82 ~~~~~iD~vi~~a 94 (264)
T PRK07576 82 DEFGPIDVLVSGA 94 (264)
T ss_pred HHcCCCCEEEECC
Confidence 13579988654
No 449
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=82.32 E-value=25 Score=31.42 Aligned_cols=96 Identities=14% Similarity=0.075 Sum_probs=59.8
Q ss_pred hcccCCCeEEEEcC--CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-----CCC
Q 021975 162 FKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFA 234 (304)
Q Consensus 162 l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~ 234 (304)
....++.+||=.|. |.|..+..+++.. +.++++++-+++..+.+++ + + .. .++...-.+. ...
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~-~---G----a~-~vi~~~~~~~~~~v~~~~ 208 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKE-L---G----FD-AVFNYKTVSLEEALKEAA 208 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH-c---C----CC-EEEeCCCccHHHHHHHHC
Confidence 33456788888874 4577777777764 3489999988888777766 1 1 11 1221111111 011
Q ss_pred CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
...+|+|+..- . ...+.+..+.|+++|+++...
T Consensus 209 ~~gvd~vld~~-----g--~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 209 PDGIDCYFDNV-----G--GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred CCCcEEEEECC-----C--HHHHHHHHHhhccCCEEEEEc
Confidence 24588887532 1 245788999999999988654
No 450
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=82.23 E-value=3.3 Score=36.47 Aligned_cols=76 Identities=16% Similarity=0.196 Sum_probs=43.3
Q ss_pred HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhccCCCHHHHHHH
Q 021975 180 FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAE 259 (304)
Q Consensus 180 ~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~ 259 (304)
+...|.+.++..+|+|+|.++..++.|.+. | ..-.. ..+.+. + ..+|+|+..--+.. ...++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g----~~~~~-~~~~~~--~--~~~DlvvlavP~~~---~~~~l~~ 64 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALEL----G----IIDEA-STDIEA--V--EDADLVVLAVPVSA---IEDVLEE 64 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT----T----SSSEE-ESHHHH--G--GCCSEEEE-S-HHH---HHHHHHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC----C----Ceeec-cCCHhH--h--cCCCEEEEcCCHHH---HHHHHHH
Confidence 356788888778999999999998888762 1 11111 111111 1 24698887543332 2355666
Q ss_pred HHHhcccCcEEE
Q 021975 260 ISRILRSGGVFV 271 (304)
Q Consensus 260 ~~r~LkpgG~lv 271 (304)
+...+++|++++
T Consensus 65 ~~~~~~~~~iv~ 76 (258)
T PF02153_consen 65 IAPYLKPGAIVT 76 (258)
T ss_dssp HHCGS-TTSEEE
T ss_pred hhhhcCCCcEEE
Confidence 666666665444
No 451
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=82.15 E-value=0.92 Score=33.98 Aligned_cols=27 Identities=22% Similarity=0.535 Sum_probs=21.2
Q ss_pred eccCCCccccccCCCCccccccccCceeeCCCCccccC
Q 021975 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (304)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~ 99 (304)
-||.||..|.... +.+.|+.|+..+..
T Consensus 2 fC~~Cg~~l~~~~-----------~~~~C~~C~~~~~~ 28 (104)
T TIGR01384 2 FCPKCGSLMTPKN-----------GVYVCPSCGYEKEK 28 (104)
T ss_pred CCcccCcccccCC-----------CeEECcCCCCcccc
Confidence 5999999995432 58999999987654
No 452
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=82.12 E-value=0.98 Score=28.87 Aligned_cols=32 Identities=16% Similarity=0.395 Sum_probs=23.1
Q ss_pred cCCeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
.+..+.|-.|+..+..... ...++|+.||+.-
T Consensus 3 ~~~~Y~C~~Cg~~~~~~~~---------~~~irCp~Cg~rI 34 (49)
T COG1996 3 AMMEYKCARCGREVELDQE---------TRGIRCPYCGSRI 34 (49)
T ss_pred ceEEEEhhhcCCeeehhhc---------cCceeCCCCCcEE
Confidence 3456899999998843221 1578999999865
No 453
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=81.98 E-value=13 Score=33.92 Aligned_cols=99 Identities=21% Similarity=0.291 Sum_probs=58.2
Q ss_pred cccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC--CCCC------C
Q 021975 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRLP------F 233 (304)
Q Consensus 163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~lp------~ 233 (304)
...++.+||-+|+|. |..+..+++.. +.+++++|.+++.++.+++. + ....+...+. .++. -
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~----G----a~~~i~~~~~~~~~~~~~~~~~t 233 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGF----G----ADLTLNPKDKSAREVKKLIKAFA 233 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHh----C----CceEecCccccHHHHHHHHHhhc
Confidence 345678999999965 66666677664 34899999999988887652 1 1111110010 0000 0
Q ss_pred CCCccc----eEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 234 ASGFVD----AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 234 ~~~~fD----~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
....+| +|+ +....+ ..+....+.|++||++++....
T Consensus 234 ~~~g~d~~~d~v~-----d~~g~~-~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 234 KARGLRSTGWKIF-----ECSGSK-PGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred ccCCCCCCcCEEE-----ECCCCh-HHHHHHHHHHhcCCeEEEECcC
Confidence 112344 343 333332 3577788899999999877643
No 454
>PRK08265 short chain dehydrogenase; Provisional
Probab=81.92 E-value=17 Score=31.63 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=45.1
Q ss_pred CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC---
Q 021975 166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 234 (304)
Q Consensus 166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 234 (304)
.++++|-.|++.|- ....|++.|. +|+.+|.++...+...+.+ ..++.++.+|+.+.. +.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASL-------GERARFIATDITDDAAIERAVATVV 75 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------CCeeEEEEecCCCHHHHHHHHHHHH
Confidence 35688888865542 3445555665 9999998876544443321 246788899987642 11
Q ss_pred --CCccceEEecch
Q 021975 235 --SGFVDAVHAGAA 246 (304)
Q Consensus 235 --~~~fD~V~~~~v 246 (304)
-+..|+++.+..
T Consensus 76 ~~~g~id~lv~~ag 89 (261)
T PRK08265 76 ARFGRVDILVNLAC 89 (261)
T ss_pred HHhCCCCEEEECCC
Confidence 135798887654
No 455
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=81.90 E-value=24 Score=31.47 Aligned_cols=93 Identities=16% Similarity=0.127 Sum_probs=56.5
Q ss_pred cccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceE
Q 021975 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 241 (304)
Q Consensus 163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V 241 (304)
...++.+||=.|+|. |..+..+++.. +.++++++.+++..+.+++ + + ...+. +.... .....+|+|
T Consensus 152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~-~---g---~~~~~----~~~~~-~~~~~~d~v 218 (319)
T cd08242 152 PITPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARR-L---G---VETVL----PDEAE-SEGGGFDVV 218 (319)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH-c---C---CcEEe----Ccccc-ccCCCCCEE
Confidence 345677888887642 44444445442 3479999999988888776 2 1 11111 11111 234568988
Q ss_pred EecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 242 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
+... .. ...++.+.+.|+++|.++...
T Consensus 219 id~~-----g~-~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 219 VEAT-----GS-PSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred EECC-----CC-hHHHHHHHHHhhcCCEEEEEc
Confidence 8742 11 345788888999999998743
No 456
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=81.78 E-value=1.1 Score=28.24 Aligned_cols=27 Identities=33% Similarity=0.801 Sum_probs=18.2
Q ss_pred eeccCCCccccccCCCCccccccccCceeeCCCCc
Q 021975 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (304)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~ 95 (304)
++||.|++.-...... ...++|..|++
T Consensus 19 ~~CP~Cg~~~~~~~~~--------~~~~~C~~C~~ 45 (46)
T PF12760_consen 19 FVCPHCGSTKHYRLKT--------RGRYRCKACRK 45 (46)
T ss_pred CCCCCCCCeeeEEeCC--------CCeEECCCCCC
Confidence 7799999963221110 26899999986
No 457
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=81.72 E-value=18 Score=31.19 Aligned_cols=75 Identities=17% Similarity=0.157 Sum_probs=48.9
Q ss_pred CCCeEEEEcCCccHHHHH----HHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-C----C--
Q 021975 166 QGGLLVDVSCGSGLFSRK----FAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F----A-- 234 (304)
Q Consensus 166 ~~~~vLDiGcG~G~~~~~----l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~----~-- 234 (304)
+++++|=.|+ +|..+.. |.+.+. +|+.++-+...++...+.+...+ .++.++.+|+.+.. + .
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~----~~~~~~~~Dl~d~~~i~~~~~~~ 83 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEALG----IDALWIAADVADEADIERLAEET 83 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC----CeEEEEEccCCCHHHHHHHHHHH
Confidence 4678898885 4444444 444455 89999998877666665554432 56788999997632 1 0
Q ss_pred ---CCccceEEecchh
Q 021975 235 ---SGFVDAVHAGAAL 247 (304)
Q Consensus 235 ---~~~fD~V~~~~vl 247 (304)
.+.+|+|+.....
T Consensus 84 ~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 84 LERFGHVDILVNNAGA 99 (259)
T ss_pred HHHhCCCCEEEECCCC
Confidence 1367988876543
No 458
>PRK09072 short chain dehydrogenase; Provisional
Probab=81.59 E-value=15 Score=31.78 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=49.7
Q ss_pred CCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC---------C
Q 021975 167 GGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---------A 234 (304)
Q Consensus 167 ~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---------~ 234 (304)
+.++|=.|++.|- +...+++.|. +|++++.++..++.....+. . ..++.++.+|+.+..- .
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-~----~~~~~~~~~D~~d~~~~~~~~~~~~~ 77 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLP-Y----PGRHRWVVADLTSEAGREAVLARARE 77 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHh-c----CCceEEEEccCCCHHHHHHHHHHHHh
Confidence 5678888876542 4455666666 99999998877766655442 1 2578889999876420 0
Q ss_pred CCccceEEecchhc
Q 021975 235 SGFVDAVHAGAALH 248 (304)
Q Consensus 235 ~~~fD~V~~~~vl~ 248 (304)
.+..|+|+......
T Consensus 78 ~~~id~lv~~ag~~ 91 (263)
T PRK09072 78 MGGINVLINNAGVN 91 (263)
T ss_pred cCCCCEEEECCCCC
Confidence 14579888876543
No 459
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=81.37 E-value=31 Score=30.89 Aligned_cols=92 Identities=20% Similarity=0.131 Sum_probs=55.3
Q ss_pred cccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceE
Q 021975 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 241 (304)
Q Consensus 163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V 241 (304)
...++.+||=.|+|. |..+..+++.. +.+++.++.++...+.+++ + + +..+. +.... ....+|++
T Consensus 164 ~~~~~~~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~~~~~~~~~~-~---g------~~~~~-~~~~~--~~~~vD~v 229 (329)
T cd08298 164 GLKPGQRLGLYGFGASAHLALQIARYQ-GAEVFAFTRSGEHQELARE-L---G------ADWAG-DSDDL--PPEPLDAA 229 (329)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEcCChHHHHHHHH-h---C------CcEEe-ccCcc--CCCcccEE
Confidence 344567777787653 44444455543 3599999988877766644 1 1 11111 11111 23468887
Q ss_pred EecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 242 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
+... .. ...++++.+.|+++|.++...
T Consensus 230 i~~~-----~~-~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 230 IIFA-----PV-GALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EEcC-----Cc-HHHHHHHHHHhhcCCEEEEEc
Confidence 7531 11 246889999999999999765
No 460
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=81.25 E-value=0.64 Score=37.84 Aligned_cols=32 Identities=19% Similarity=0.464 Sum_probs=23.6
Q ss_pred cCCeeeccCCCccccccCCCCccccccccCceeeCCCCcc
Q 021975 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (304)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 96 (304)
.-..+.||.|+....... .+...+.|+.||..
T Consensus 106 ~~~~Y~Cp~c~~r~tf~e--------A~~~~F~Cp~Cg~~ 137 (158)
T TIGR00373 106 NNMFFICPNMCVRFTFNE--------AMELNFTCPRCGAM 137 (158)
T ss_pred CCCeEECCCCCcEeeHHH--------HHHcCCcCCCCCCE
Confidence 345689999998775533 23358999999975
No 461
>PRK08267 short chain dehydrogenase; Provisional
Probab=81.23 E-value=16 Score=31.56 Aligned_cols=72 Identities=24% Similarity=0.173 Sum_probs=47.0
Q ss_pred CeEEEEcCCcc--H-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC-----
Q 021975 168 GLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA----- 234 (304)
Q Consensus 168 ~~vLDiGcG~G--~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----- 234 (304)
+++|-.|++.| . +...+++.|. +|+.++.++..++...+... ..++.++.+|+.+.. +.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~~~~~~~~~ 73 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELG------AGNAWTGALDVTDRAAWDAALADFAAA 73 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhc------CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 36788887654 2 3455556665 99999998877666544332 246889999997632 11
Q ss_pred -CCccceEEecchh
Q 021975 235 -SGFVDAVHAGAAL 247 (304)
Q Consensus 235 -~~~fD~V~~~~vl 247 (304)
.+.+|+|+.....
T Consensus 74 ~~~~id~vi~~ag~ 87 (260)
T PRK08267 74 TGGRLDVLFNNAGI 87 (260)
T ss_pred cCCCCCEEEECCCC
Confidence 3467998886654
No 462
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=81.09 E-value=18 Score=32.61 Aligned_cols=96 Identities=15% Similarity=0.184 Sum_probs=57.2
Q ss_pred ccCCCeEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC------CCCCC
Q 021975 164 SAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL------PFASG 236 (304)
Q Consensus 164 ~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l------p~~~~ 236 (304)
..++.+||..|+| .|..+..+++......+++++.++...+.+++. + ...++...-..+ -...+
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g-----~~~vi~~~~~~~~~~i~~~~~~~ 235 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----G-----ATDIINPKNGDIVEQILELTGGR 235 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----C-----CcEEEcCCcchHHHHHHHHcCCC
Confidence 3457788887765 366666677664223788998888777666542 1 011221111110 01235
Q ss_pred ccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
.+|+|+.... ....+.+..+.|+++|+++...
T Consensus 236 ~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 236 GVDCVIEAVG------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred CCcEEEEccC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 6898886421 1246888899999999988654
No 463
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=81.08 E-value=12 Score=37.33 Aligned_cols=90 Identities=11% Similarity=0.112 Sum_probs=57.7
Q ss_pred eEEEEcCCccHHHHHHH----HhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----CCCCccce
Q 021975 169 LLVDVSCGSGLFSRKFA----KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDA 240 (304)
Q Consensus 169 ~vLDiGcG~G~~~~~l~----~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~ 240 (304)
.|+=+|+| .++..++ +.+. .++.+|.+++.++.+++ .+...+.+|..+.. ..-+..|+
T Consensus 402 ~vII~G~G--r~G~~va~~L~~~g~--~vvvID~d~~~v~~~~~----------~g~~v~~GDat~~~~L~~agi~~A~~ 467 (601)
T PRK03659 402 QVIIVGFG--RFGQVIGRLLMANKM--RITVLERDISAVNLMRK----------YGYKVYYGDATQLELLRAAGAEKAEA 467 (601)
T ss_pred CEEEecCc--hHHHHHHHHHHhCCC--CEEEEECCHHHHHHHHh----------CCCeEEEeeCCCHHHHHhcCCccCCE
Confidence 45555554 4544444 3344 99999999999998876 45778999997742 12235677
Q ss_pred EEecchhccCCCHHH--HHHHHHHhcccCcEEEEEEeCC
Q 021975 241 VHAGAALHCWPSPSN--AVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 241 V~~~~vl~h~~d~~~--~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
+++.. +|+.. .+-...|.+.|...++.....+
T Consensus 468 vv~~~-----~d~~~n~~i~~~~r~~~p~~~IiaRa~~~ 501 (601)
T PRK03659 468 IVITC-----NEPEDTMKIVELCQQHFPHLHILARARGR 501 (601)
T ss_pred EEEEe-----CCHHHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 66643 34432 3444566677888887766544
No 464
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=81.07 E-value=6.5 Score=36.76 Aligned_cols=54 Identities=7% Similarity=0.012 Sum_probs=38.7
Q ss_pred HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH
Q 021975 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK 211 (304)
Q Consensus 156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~ 211 (304)
+...+.+...++.+||-|..|....+.. ...+| .+|++||+|+......+=+..
T Consensus 25 ~vD~~aL~i~~~d~vl~ItSaG~N~L~y-L~~~P-~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 25 RVDMEALNIGPDDRVLTITSAGCNALDY-LLAGP-KRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HHHHHHhCCCCCCeEEEEccCCchHHHH-HhcCC-ceEEEEeCCHHHHHHHHHHHH
Confidence 4455667778899999997665555555 44444 599999999998777765543
No 465
>PRK08324 short chain dehydrogenase; Validated
Probab=80.90 E-value=19 Score=36.52 Aligned_cols=103 Identities=22% Similarity=0.225 Sum_probs=62.9
Q ss_pred CCCeEEEEcCCcc--H-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC---
Q 021975 166 QGGLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 234 (304)
Q Consensus 166 ~~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 234 (304)
.+++||-.|++.| . ....+.+.|. +|+.+|.++..++.+.+.+... .++.++.+|+.+.. +.
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~-----~~v~~v~~Dvtd~~~v~~~~~~~~ 493 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGP-----DRALGVACDVTDEAAVQAAFEEAA 493 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhcc-----CcEEEEEecCCCHHHHHHHHHHHH
Confidence 4578898886443 2 3444555565 8999999987766655543221 36788888986632 11
Q ss_pred --CCccceEEecchhccCCC-------------------HHHHHHHHHHhccc---CcEEEEEEe
Q 021975 235 --SGFVDAVHAGAALHCWPS-------------------PSNAVAEISRILRS---GGVFVGTTF 275 (304)
Q Consensus 235 --~~~fD~V~~~~vl~h~~d-------------------~~~~l~~~~r~Lkp---gG~lvi~~~ 275 (304)
-+.+|+|+....+-.... ...+++.+.+.++. ||.+++...
T Consensus 494 ~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 494 LAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 136899888665322110 22346666777766 677776553
No 466
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=80.84 E-value=6.3 Score=30.15 Aligned_cols=90 Identities=20% Similarity=0.273 Sum_probs=56.4
Q ss_pred CCCeEEEEcCCccH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC-CCccceEEe
Q 021975 166 QGGLLVDVSCGSGL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHA 243 (304)
Q Consensus 166 ~~~~vLDiGcG~G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~ 243 (304)
..++|+|+|-|.=. .+..|+++|. .++++|+++. . ....+.++..|+.+.... =...|+|.+
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~--dv~atDI~~~---~-----------a~~g~~~v~DDitnP~~~iY~~A~lIYS 76 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGF--DVLATDINEK---T-----------APEGLRFVVDDITNPNISIYEGADLIYS 76 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCC--cEEEEecccc---c-----------CcccceEEEccCCCccHHHhhCccceee
Confidence 34599999988754 4667777776 9999999886 1 125688999999874311 123566666
Q ss_pred cchhccCCCHHHHHHHHHHhccc-CcEEEEEEeCC
Q 021975 244 GAALHCWPSPSNAVAEISRILRS-GGVFVGTTFLR 277 (304)
Q Consensus 244 ~~vl~h~~d~~~~l~~~~r~Lkp-gG~lvi~~~~~ 277 (304)
. . -|.++.+.+.++-+. |..+++.....
T Consensus 77 i---R---pppEl~~~ildva~aVga~l~I~pL~G 105 (129)
T COG1255 77 I---R---PPPELQSAILDVAKAVGAPLYIKPLTG 105 (129)
T ss_pred c---C---CCHHHHHHHHHHHHhhCCCEEEEecCC
Confidence 3 2 344444444444433 34566666554
No 467
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=80.83 E-value=22 Score=30.59 Aligned_cols=75 Identities=23% Similarity=0.262 Sum_probs=48.3
Q ss_pred CCeEEEEcCCcc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC----
Q 021975 167 GGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---- 234 (304)
Q Consensus 167 ~~~vLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---- 234 (304)
++++|=.|+..| .....|++.+. +|+.++.++...+...+.+...+ .++.++.+|+.+.. +.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG----GKAIGVAMDVTNEDAVNAGIDKVAE 80 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC----ceEEEEECCCCCHHHHHHHHHHHHH
Confidence 567887776433 23445555665 89999999877666666554433 46788899987642 00
Q ss_pred -CCccceEEecchh
Q 021975 235 -SGFVDAVHAGAAL 247 (304)
Q Consensus 235 -~~~fD~V~~~~vl 247 (304)
.+..|+|+.....
T Consensus 81 ~~~~~d~vi~~ag~ 94 (262)
T PRK13394 81 RFGSVDILVSNAGI 94 (262)
T ss_pred HcCCCCEEEECCcc
Confidence 1357988876554
No 468
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=80.67 E-value=0.74 Score=38.23 Aligned_cols=31 Identities=26% Similarity=0.662 Sum_probs=23.4
Q ss_pred CCeeeccCCCccccccCCCCccccccccCceeeCCCCcc
Q 021975 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (304)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~ 96 (304)
-..+.||.|+....... .+...+.|+.||..
T Consensus 115 ~~~Y~Cp~C~~rytf~e--------A~~~~F~Cp~Cg~~ 145 (178)
T PRK06266 115 NMFFFCPNCHIRFTFDE--------AMEYGFRCPQCGEM 145 (178)
T ss_pred CCEEECCCCCcEEeHHH--------HhhcCCcCCCCCCC
Confidence 35799999998776643 23468999999875
No 469
>PRK07774 short chain dehydrogenase; Provisional
Probab=80.54 E-value=27 Score=29.76 Aligned_cols=74 Identities=22% Similarity=0.238 Sum_probs=45.9
Q ss_pred CCeEEEEcCCccHHH----HHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC---------
Q 021975 167 GGLLVDVSCGSGLFS----RKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--------- 233 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~----~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--------- 233 (304)
++++|=.|+ +|..+ ..+.+.+. +|++++-++...+...+.+...+ .++.++..|+.+..-
T Consensus 6 ~k~vlItGa-sg~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~ 78 (250)
T PRK07774 6 DKVAIVTGA-AGGIGQAYAEALAREGA--SVVVADINAEGAERVAKQIVADG----GTAIAVQVDVSDPDSAKAMADATV 78 (250)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHHHHHHHH
Confidence 567888885 34444 44445555 99999988766555544443322 457788889876430
Q ss_pred -CCCccceEEecchh
Q 021975 234 -ASGFVDAVHAGAAL 247 (304)
Q Consensus 234 -~~~~fD~V~~~~vl 247 (304)
.-+.+|+|+.....
T Consensus 79 ~~~~~id~vi~~ag~ 93 (250)
T PRK07774 79 SAFGGIDYLVNNAAI 93 (250)
T ss_pred HHhCCCCEEEECCCC
Confidence 01358999986653
No 470
>KOG2691 consensus RNA polymerase II subunit 9 [Transcription]
Probab=80.47 E-value=1.3 Score=33.00 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=24.2
Q ss_pred CeeeccCCCccccc-cCCCCccccccccCceeeCCCCccc
Q 021975 59 DLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 59 ~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
..-.||.|+..-.. -..+.......+.-.+.|.+|+|.+
T Consensus 72 s~~~C~~C~~~eavffQ~~~~r~d~~m~l~yvC~~C~h~w 111 (113)
T KOG2691|consen 72 SDKHCPKCGHREAVFFQAQTRRADEAMRLFYVCCSCGHRW 111 (113)
T ss_pred ccccCCccCCcceEEEecccccccceEEEEEEeccccccc
Confidence 56789999984211 1112223344445678899999976
No 471
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=80.47 E-value=28 Score=32.02 Aligned_cols=99 Identities=17% Similarity=0.185 Sum_probs=58.9
Q ss_pred cccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC--CC-----CCC
Q 021975 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC--RL-----PFA 234 (304)
Q Consensus 163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~--~l-----p~~ 234 (304)
...++.+||=+|+|. |..+..+++......++++|.+++..+.+++. + .. .++...-. +. ...
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l----G----a~-~~i~~~~~~~~~~~~v~~~~ 253 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF----G----AT-DCVNPKDHDKPIQQVLVEMT 253 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----C----CC-EEEcccccchHHHHHHHHHh
Confidence 345678888888763 55666666664223699999999988877651 1 11 11211100 00 011
Q ss_pred CCccceEEecchhccCCCHHHHHHHHHHhcccC-cEEEEEEeC
Q 021975 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTFL 276 (304)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~lvi~~~~ 276 (304)
.+.+|+|+-.- .. ...+.+..+.|+++ |+++.....
T Consensus 254 ~~g~d~vid~~-----g~-~~~~~~a~~~l~~~~G~~v~~g~~ 290 (368)
T cd08300 254 DGGVDYTFECI-----GN-VKVMRAALEACHKGWGTSVIIGVA 290 (368)
T ss_pred CCCCcEEEECC-----CC-hHHHHHHHHhhccCCCeEEEEccC
Confidence 23588887632 22 24677888899987 988876543
No 472
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=80.35 E-value=30 Score=31.79 Aligned_cols=98 Identities=19% Similarity=0.247 Sum_probs=57.6
Q ss_pred cccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC--CC----C-CCC
Q 021975 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CR----L-PFA 234 (304)
Q Consensus 163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~----l-p~~ 234 (304)
...++.+||=+|+|. |..+..+++.....+|+++|.++...+.+++. + .. .++...- .. + ...
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~----g----a~-~~i~~~~~~~~~~~~~~~~~ 251 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF----G----AT-DFINPKDSDKPVSEVIREMT 251 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----C----CC-cEeccccccchHHHHHHHHh
Confidence 345678888888763 55556666664223799999999888877551 1 11 1111110 00 0 011
Q ss_pred CCccceEEecchhccCCCHHHHHHHHHHhcccC-cEEEEEEe
Q 021975 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF 275 (304)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~lvi~~~ 275 (304)
.+.+|+|+-.- .. ...+.+..+.|+++ |.+++...
T Consensus 252 ~~g~d~vid~~-----g~-~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 252 GGGVDYSFECT-----GN-ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CCCCCEEEECC-----CC-hHHHHHHHHhcccCCCEEEEEcC
Confidence 24588887532 22 24577888899886 99887654
No 473
>PRK10458 DNA cytosine methylase; Provisional
Probab=80.19 E-value=13 Score=35.81 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=48.4
Q ss_pred HHHHHHHhhcccC------CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc
Q 021975 154 EFKMAQEYFKSAQ------GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD 227 (304)
Q Consensus 154 ~~~~l~~~l~~~~------~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d 227 (304)
....+...+...+ ..+++|+=||.|.+..-+...|. ..|.++|+++.+.+.-+.++.. .+....+.+|
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG~-~~v~a~Eid~~A~~TY~~N~~~-----~p~~~~~~~D 142 (467)
T PRK10458 69 EFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIGG-QCVFTSEWNKHAVRTYKANWYC-----DPATHRFNED 142 (467)
T ss_pred HHHHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcCC-EEEEEEechHHHHHHHHHHcCC-----CCccceeccC
Confidence 3445555553322 45899999999999999988874 4678999999888777765421 1233445566
Q ss_pred CCCC
Q 021975 228 VCRL 231 (304)
Q Consensus 228 ~~~l 231 (304)
+..+
T Consensus 143 I~~i 146 (467)
T PRK10458 143 IRDI 146 (467)
T ss_pred hhhC
Confidence 6554
No 474
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=80.16 E-value=1.7 Score=26.05 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=18.9
Q ss_pred eeccCCCccccccCCCCccccccccCceeeCCCCc
Q 021975 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (304)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~ 95 (304)
..||.|++.-...- .+ .-..+.+.|.+|+.
T Consensus 4 ~pCP~CGG~DrFr~-~d----~~g~G~~~C~~Cg~ 33 (37)
T smart00778 4 GPCPNCGGSDRFRF-DD----KDGRGTWFCSVCGA 33 (37)
T ss_pred cCCCCCCCcccccc-cc----CCCCcCEEeCCCCC
Confidence 57999999543321 11 11237899999974
No 475
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.07 E-value=4 Score=37.10 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=48.0
Q ss_pred EEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC-CCccceEEecc
Q 021975 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGA 245 (304)
Q Consensus 170 vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~ 245 (304)
|+|+-||.|.+..-+...|. ..+.++|+++.+++.-+.++. + .++.+|+.++... -..+|+++...
T Consensus 1 vidLF~G~GG~~~Gl~~aG~-~~~~a~e~~~~a~~ty~~N~~--------~-~~~~~Di~~~~~~~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGF-KCVFASEIDKYAQKTYEANFG--------N-KVPFGDITKISPSDIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHcCC-eEEEEEeCCHHHHHHHHHhCC--------C-CCCccChhhhhhhhCCCcCEEEecC
Confidence 68999999999999998874 356689999999888877642 2 3456777665421 12479888753
No 476
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=80.00 E-value=27 Score=31.76 Aligned_cols=97 Identities=15% Similarity=0.226 Sum_probs=58.8
Q ss_pred ccCCCeEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-----C-CCCC
Q 021975 164 SAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----P-FASG 236 (304)
Q Consensus 164 ~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p-~~~~ 236 (304)
..++.+||-.|+| .|..+..+++......++++|.+++..+.+++. + . -.++...-.+. . ....
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g----~-~~~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY----G----A-TDIVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----C----C-ceEecCCCCCHHHHHHHHhCCC
Confidence 4457788888876 356666667664233699999998877777651 1 1 11221111110 0 1234
Q ss_pred ccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
.+|+|+.... . ...+.++.+.|+++|+++....
T Consensus 235 ~~d~vld~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 235 GVDAVIIAGG-----G-QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred CCcEEEECCC-----C-HHHHHHHHHHhhcCCEEEEecc
Confidence 6898885321 1 2467889999999999886543
No 477
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=79.99 E-value=1.3 Score=27.36 Aligned_cols=33 Identities=12% Similarity=0.264 Sum_probs=21.5
Q ss_pred cCCeeeccCCCccccccCCCCccccccccCceeeCCCCc
Q 021975 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (304)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~ 95 (304)
.+-.+.|+.||..+.....- .. .....|+.||.
T Consensus 2 P~Yey~C~~Cg~~fe~~~~~----~~--~~~~~CP~Cg~ 34 (42)
T PF09723_consen 2 PIYEYRCEECGHEFEVLQSI----SE--DDPVPCPECGS 34 (42)
T ss_pred CCEEEEeCCCCCEEEEEEEc----CC--CCCCcCCCCCC
Confidence 34568999999866443211 11 25789999987
No 478
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=79.88 E-value=6.3 Score=36.70 Aligned_cols=120 Identities=10% Similarity=0.043 Sum_probs=78.5
Q ss_pred HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH-------HhcCccCCCCeEEEEccCC
Q 021975 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI-------KQDNTILTSNLALVRADVC 229 (304)
Q Consensus 157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~-------~~~~~~~~~~i~~~~~d~~ 229 (304)
-+.+.+...++....|+|.|.|.....++..+....-+|+++.....+.+..+. +..|- ....+..+.+++.
T Consensus 183 si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk-~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 183 SIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK-KPNKIETIHGSFL 261 (419)
T ss_pred HHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCC-CcCceeecccccC
Confidence 344456667888999999999999988888765567788887654443333322 33331 1345778888876
Q ss_pred CCCC---CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975 230 RLPF---ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY 278 (304)
Q Consensus 230 ~lp~---~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~ 278 (304)
+-.+ -....++|+++.+... ++...-+.++..-+++|-+++-..+...
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred CHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEeccccccc
Confidence 5321 1345688888765432 2333346689999999999887766553
No 479
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=79.80 E-value=11 Score=35.13 Aligned_cols=95 Identities=17% Similarity=0.158 Sum_probs=53.6
Q ss_pred cCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHH-HHHHHHHHHhcCccCCCCeEEEEc-cCCCCCCCCCccceE
Q 021975 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENM-LRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVDAV 241 (304)
Q Consensus 165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~-~~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD~V 241 (304)
.++.+||-.|+|. |..+..+++.. +.++++++.+++. .+.+++ .+ .. .++.. +...+.-..+.+|+|
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a~~----lG----a~-~~i~~~~~~~v~~~~~~~D~v 246 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAIDR----LG----AD-SFLVTTDSQKMKEAVGTMDFI 246 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHHHh----CC----Cc-EEEcCcCHHHHHHhhCCCcEE
Confidence 3577888888864 56666666663 3489999887543 344433 22 11 11110 100000001247877
Q ss_pred EecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 242 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
+-.- ..+ ..+.+..+.|++||.++....
T Consensus 247 id~~-----G~~-~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 247 IDTV-----SAE-HALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred EECC-----CcH-HHHHHHHHhhcCCCEEEEEcc
Confidence 7632 222 357888899999999987654
No 480
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=79.68 E-value=37 Score=30.73 Aligned_cols=98 Identities=17% Similarity=0.177 Sum_probs=59.4
Q ss_pred hcccCCCeEEEEcCCc-cHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-------C-
Q 021975 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-------L- 231 (304)
Q Consensus 162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-------l- 231 (304)
....++.+||-.|+|. |..+..+++.. +.+ ++.++.++...+.+++. + .. .++..+-.. +
T Consensus 158 ~~~~~g~~vlI~g~g~vG~~a~~lak~~-G~~~v~~~~~~~~~~~~~~~~----g----~~-~vi~~~~~~~~~~~~~~~ 227 (343)
T cd05285 158 AGVRPGDTVLVFGAGPIGLLTAAVAKAF-GATKVVVTDIDPSRLEFAKEL----G----AT-HTVNVRTEDTPESAEKIA 227 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHc----C----Cc-EEeccccccchhHHHHHH
Confidence 3445677888788765 66677777764 235 89998888877766542 1 11 111111111 0
Q ss_pred -CCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975 232 -PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275 (304)
Q Consensus 232 -p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~ 275 (304)
......+|+|+.... ....+.+..+.|+++|+++....
T Consensus 228 ~~~~~~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 228 ELLGGKGPDVVIECTG------AESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred HHhCCCCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 122345899986532 12357888999999999887653
No 481
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=79.67 E-value=0.91 Score=28.18 Aligned_cols=14 Identities=21% Similarity=0.767 Sum_probs=10.1
Q ss_pred CceeeCCCCccccC
Q 021975 86 SGFKCRKCDKTYSS 99 (304)
Q Consensus 86 ~~l~C~~C~~~~~~ 99 (304)
..+.|++||..+..
T Consensus 31 p~~~C~~CGE~~~~ 44 (46)
T TIGR03831 31 PALVCPQCGEEYLD 44 (46)
T ss_pred CccccccCCCEeeC
Confidence 35679999987643
No 482
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=79.62 E-value=0.86 Score=40.05 Aligned_cols=36 Identities=33% Similarity=0.508 Sum_probs=26.9
Q ss_pred cCCeeeccCCCccccccCCCCccccccccCceeeCCCCccccCC
Q 021975 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (304)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~ 100 (304)
+--...||.|+.-+...+ ...+..+|++|++.+.+.
T Consensus 25 e~lw~KCp~c~~~~y~~e--------L~~n~~vcp~c~~h~ri~ 60 (294)
T COG0777 25 EGLWTKCPSCGEMLYRKE--------LESNLKVCPKCGHHMRIS 60 (294)
T ss_pred CCceeECCCccceeeHHH--------HHhhhhcccccCcccccC
Confidence 344678999999887644 334678999999998553
No 483
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=79.50 E-value=28 Score=31.35 Aligned_cols=96 Identities=18% Similarity=0.173 Sum_probs=59.6
Q ss_pred cccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC----C--CCCC
Q 021975 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----L--PFAS 235 (304)
Q Consensus 163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~----l--p~~~ 235 (304)
...++.+||-.|+|. |..+..+++.. +.+++++..+++..+.+++.- . -.++...-.. + ....
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~~g--------~-~~v~~~~~~~~~~~l~~~~~~ 225 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARELG--------A-DDTINVGDEDVAARLRELTDG 225 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHhC--------C-CEEecCcccCHHHHHHHHhCC
Confidence 345677899998764 66777777763 358999988888877775421 0 1122111111 0 0123
Q ss_pred CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
..+|+|+.... ....+.++.+.|+++|.++...
T Consensus 226 ~~vd~vld~~g------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 226 EGADVVIDATG------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEEc
Confidence 45899887521 1345788899999999988654
No 484
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=79.49 E-value=9.2 Score=34.01 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=48.0
Q ss_pred cHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc
Q 021975 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD 213 (304)
Q Consensus 151 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~ 213 (304)
+.+..+..... ...++..|||.=+|+|..+......+- .++|+|+++..++.+.+++...
T Consensus 208 P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r--~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 208 PLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGR--RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred hHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCC--ceEEEecCHHHHHHHHHHHHhh
Confidence 34444444443 345688999999999999998888876 9999999999999999988754
No 485
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.48 E-value=29 Score=29.56 Aligned_cols=74 Identities=27% Similarity=0.290 Sum_probs=47.7
Q ss_pred CCeEEEEcCCcc--H-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-C---------
Q 021975 167 GGLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F--------- 233 (304)
Q Consensus 167 ~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~--------- 233 (304)
+.++|=.|+..| . +...|.+.+. +|++++-++...+.....+.. + .++.++.+|+.+.. +
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~----~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNEEAAERVAAEILA-G----GRAIAVAADVSDEADVEAAVAAALE 77 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc-C----CeEEEEECCCCCHHHHHHHHHHHHH
Confidence 567888886543 2 3455556665 899999998766655554432 2 45788999987642 1
Q ss_pred CCCccceEEecchh
Q 021975 234 ASGFVDAVHAGAAL 247 (304)
Q Consensus 234 ~~~~fD~V~~~~vl 247 (304)
.-+.+|+|+.....
T Consensus 78 ~~~~~d~vi~~ag~ 91 (251)
T PRK07231 78 RFGSVDILVNNAGT 91 (251)
T ss_pred HhCCCCEEEECCCC
Confidence 01357988886654
No 486
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=79.42 E-value=1 Score=33.16 Aligned_cols=34 Identities=24% Similarity=0.522 Sum_probs=23.0
Q ss_pred CCeeeccCCCccccc---cCCCCccccccccCceeeCCCCccc
Q 021975 58 GDLFSCPICYEPLIR---KGPTGLTLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 58 ~~~l~CP~C~~~l~~---~~~~~~~~~~i~~~~l~C~~C~~~~ 97 (304)
-..|.||.|+..... .... ..+ +.+.|..||..+
T Consensus 20 ~k~FtCp~Cghe~vs~ctvkk~----~~~--g~~~Cg~CGls~ 56 (104)
T COG4888 20 PKTFTCPRCGHEKVSSCTVKKT----VNI--GTAVCGNCGLSF 56 (104)
T ss_pred CceEecCccCCeeeeEEEEEec----Cce--eEEEcccCcceE
Confidence 346999999996533 2211 112 688999999877
No 487
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=79.41 E-value=6.5 Score=31.53 Aligned_cols=100 Identities=16% Similarity=0.157 Sum_probs=46.8
Q ss_pred CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-CCC---CCCccceEE
Q 021975 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF---ASGFVDAVH 242 (304)
Q Consensus 167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~---~~~~fD~V~ 242 (304)
.+-|||+|=|+|..-.+|.+..|+.+++.+|-.-.+--.+ ..+.-.++.+|+.+ ++. -....-++.
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~----------~P~~~~~ilGdi~~tl~~~~~~g~~a~laH 98 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSS----------TPPEEDLILGDIRETLPALARFGAGAALAH 98 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG-------------GGGEEES-HHHHHHHHHHH-S-EEEEE
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCC----------CCchHheeeccHHHHhHHHHhcCCceEEEE
Confidence 4689999999999999999999999999999643221111 12334566666643 221 112222233
Q ss_pred ecchhccCCCHH----H-HHHHHHHhcccCcEEEEEEeCC
Q 021975 243 AGAALHCWPSPS----N-AVAEISRILRSGGVFVGTTFLR 277 (304)
Q Consensus 243 ~~~vl~h~~d~~----~-~l~~~~r~LkpgG~lvi~~~~~ 277 (304)
.....++ ++.. . +-.-+..+|.|||+++-..+..
T Consensus 99 aD~G~g~-~~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 99 ADIGTGD-KEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp E----S--HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred eecCCCC-cchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 2222111 1111 1 1233456899999888766554
No 488
>PRK06914 short chain dehydrogenase; Provisional
Probab=79.23 E-value=24 Score=30.77 Aligned_cols=76 Identities=21% Similarity=0.181 Sum_probs=46.5
Q ss_pred CCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC----C-----
Q 021975 167 GGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----A----- 234 (304)
Q Consensus 167 ~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~----~----- 234 (304)
+.++|-.|++.|- +...|++.+. +|++++-+++..+...+.....+ ...++.++.+|+.+... .
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~~~~~~~~~~~~~ 78 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNPEKQENLLSQATQLN--LQQNIKVQQLDVTDQNSIHNFQLVLKE 78 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhcC--CCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 4578888865442 3344555565 89999988776655544443322 23568899999977321 0
Q ss_pred CCccceEEecch
Q 021975 235 SGFVDAVHAGAA 246 (304)
Q Consensus 235 ~~~fD~V~~~~v 246 (304)
-+..|+|+....
T Consensus 79 ~~~id~vv~~ag 90 (280)
T PRK06914 79 IGRIDLLVNNAG 90 (280)
T ss_pred cCCeeEEEECCc
Confidence 135688877654
No 489
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=79.01 E-value=2.4 Score=25.25 Aligned_cols=31 Identities=19% Similarity=0.589 Sum_probs=18.5
Q ss_pred eeeccCCCccc-cccCCCCccccccccCceeeCCCC
Q 021975 60 LFSCPICYEPL-IRKGPTGLTLGAIYRSGFKCRKCD 94 (304)
Q Consensus 60 ~l~CP~C~~~l-~~~~~~~~~~~~i~~~~l~C~~C~ 94 (304)
.+.||.|++.. ....- .+.. -.+.++|..|.
T Consensus 5 ~v~CP~C~s~~~v~k~G--~~~~--G~qryrC~~C~ 36 (36)
T PF03811_consen 5 DVHCPRCQSTEGVKKNG--KSPS--GHQRYRCKDCR 36 (36)
T ss_pred eeeCCCCCCCCcceeCC--CCCC--CCEeEecCcCC
Confidence 46899999977 22211 1111 12578999884
No 490
>COG4640 Predicted membrane protein [Function unknown]
Probab=78.86 E-value=1 Score=41.53 Aligned_cols=29 Identities=21% Similarity=0.671 Sum_probs=21.0
Q ss_pred eeeccCCCccccccCCCCccccccccCceeeCCCCccccCCC
Q 021975 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (304)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~ 101 (304)
|.-||.||+.... ....|++||+.+-.+.
T Consensus 1 M~fC~kcG~qk~E-------------d~~qC~qCG~~~t~~~ 29 (465)
T COG4640 1 MKFCPKCGSQKAE-------------DDVQCTQCGHKFTSRQ 29 (465)
T ss_pred CCccccccccccc-------------ccccccccCCcCCchh
Confidence 4679999976533 3455999999875554
No 491
>PRK06940 short chain dehydrogenase; Provisional
Probab=78.80 E-value=28 Score=30.60 Aligned_cols=99 Identities=18% Similarity=0.234 Sum_probs=57.3
Q ss_pred CeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----C----CCCc
Q 021975 168 GLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F----ASGF 237 (304)
Q Consensus 168 ~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~----~~~~ 237 (304)
+.+|=-|+ |..+..+++.. .+.+|+.+|.++..++...+.++..+ .++.++.+|+.+.. + ..+.
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~i~~~~~~~~~~g~ 76 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG----FDVSTQEVDVSSRESVKALAATAQTLGP 76 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC----CeEEEEEeecCCHHHHHHHHHHHHhcCC
Confidence 35555564 34555544431 23489999998876665555544332 46788888986632 1 1146
Q ss_pred cceEEecchhccC-CCHH-----------HHHHHHHHhcccCcEEEE
Q 021975 238 VDAVHAGAALHCW-PSPS-----------NAVAEISRILRSGGVFVG 272 (304)
Q Consensus 238 fD~V~~~~vl~h~-~d~~-----------~~l~~~~r~LkpgG~lvi 272 (304)
+|+++.+..+... .++. .+++.+.+.++.+|.+++
T Consensus 77 id~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~ 123 (275)
T PRK06940 77 VTGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV 123 (275)
T ss_pred CCEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence 8998887654322 1222 235666667776665544
No 492
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=78.78 E-value=24 Score=33.33 Aligned_cols=91 Identities=10% Similarity=0.023 Sum_probs=55.6
Q ss_pred cCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEe
Q 021975 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (304)
Q Consensus 165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (304)
..+.+|+-+|+|. |......++.. +.+|+++|.++.....+.. ....+. +..+. . ...|+|+.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~----------~G~~v~--~leea-l--~~aDVVIt 256 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAM----------DGFRVM--TMEEA-A--KIGDIFIT 256 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHh----------cCCEeC--CHHHH-H--hcCCEEEE
Confidence 4688999999997 55555444442 4599999999865444433 122222 22221 1 24688876
Q ss_pred cchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975 244 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276 (304)
Q Consensus 244 ~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~ 276 (304)
.- ..+..+=.+....+|+|++++.....
T Consensus 257 aT-----G~~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 257 AT-----GNKDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred CC-----CCHHHHHHHHHhcCCCCcEEEEECCC
Confidence 32 23332234588899999998877654
No 493
>PHA02998 RNA polymerase subunit; Provisional
Probab=78.61 E-value=1.2 Score=36.35 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=25.2
Q ss_pred CeeeccCCCccccc-cCCCCccccccccCceeeCCCCccccCC
Q 021975 59 DLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (304)
Q Consensus 59 ~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~l~C~~C~~~~~~~ 100 (304)
....||.|++.-.. ...+.-+.++-+...++|..||+.+..+
T Consensus 142 t~v~CPkCg~~~A~f~qlQTRSADEPmT~FYkC~~CG~~wkpp 184 (195)
T PHA02998 142 YNTPCPNCKSKNTTPMMIQTRAADEPPLVRHACRDCKKHFKPP 184 (195)
T ss_pred cCCCCCCCCCCceEEEEEeeccCCCCceEEEEcCCCCCccCCc
Confidence 45789999995211 0111112233444688999999988443
No 494
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=78.44 E-value=1.3 Score=36.27 Aligned_cols=35 Identities=29% Similarity=0.566 Sum_probs=20.3
Q ss_pred ccCCCcc-cccc-CCCCc-cccccccCceeeCCCCccc
Q 021975 63 CPICYEP-LIRK-GPTGL-TLGAIYRSGFKCRKCDKTY 97 (304)
Q Consensus 63 CP~C~~~-l~~~-~~~~~-~~~~i~~~~l~C~~C~~~~ 97 (304)
||+||.+ +... ....+ -...+.--.+.|+.||...
T Consensus 1 CP~Cg~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~ 38 (163)
T TIGR00340 1 CPVCGSRTLKAVTYDYDIPYFGKIMLSTYICEKCGYRS 38 (163)
T ss_pred CCCCCCcceEeeeEeccCCCcceEEEEEEECCCCCCch
Confidence 9999986 3221 11111 1233333578899999876
No 495
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=78.35 E-value=41 Score=30.32 Aligned_cols=95 Identities=20% Similarity=0.257 Sum_probs=57.9
Q ss_pred cccCCCeEEEEcCCc-cHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc------CCCCCCC
Q 021975 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD------VCRLPFA 234 (304)
Q Consensus 163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d------~~~lp~~ 234 (304)
...++.+||-.|+|. |..+..+++.. +.+ +++++-++...+.+++. + . ..++... +... ..
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~~~----g----~-~~~~~~~~~~~~~~~~~-~~ 224 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVAREL----G----A-DDTINPKEEDVEKVREL-TE 224 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHc----C----C-CEEecCccccHHHHHHH-hC
Confidence 345677888888765 66666677664 235 99999888777666431 1 1 1122111 0111 12
Q ss_pred CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
...+|+|+..- .....+..+.+.|+++|+++...
T Consensus 225 ~~~~d~vld~~------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 225 GRGADLVIEAA------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCCCEEEECC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 23589888642 12346788899999999988765
No 496
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.23 E-value=6.9 Score=35.01 Aligned_cols=100 Identities=14% Similarity=0.188 Sum_probs=58.4
Q ss_pred CeEEEEcCCc--cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh-------cCcc-------CCCCeEEEEccCCCC
Q 021975 168 GLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-------DNTI-------LTSNLALVRADVCRL 231 (304)
Q Consensus 168 ~~vLDiGcG~--G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-------~~~~-------~~~~i~~~~~d~~~l 231 (304)
.+|--||+|. +.....++..|. +|+.+|.+++.++.+++++.. .+.. ...++. ...|...+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~~ 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGDF 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHHh
Confidence 4788899985 345566666776 999999999999887765432 1100 001122 12333221
Q ss_pred CCCCCccceEEecchhccCCCHHHHHHHHHHhc-ccCcEEEEEEe
Q 021975 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRIL-RSGGVFVGTTF 275 (304)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~L-kpgG~lvi~~~ 275 (304)
...|+|+-. +.|...-...++.++.+.+ +|+.++.-.+.
T Consensus 83 ----~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~snTS 122 (286)
T PRK07819 83 ----ADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLASNTS 122 (286)
T ss_pred ----CCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 345766654 3333333346788888888 77766655443
No 497
>PRK09242 tropinone reductase; Provisional
Probab=78.01 E-value=44 Score=28.70 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=50.2
Q ss_pred CCCeEEEEcCCcc--H-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----------
Q 021975 166 QGGLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------- 232 (304)
Q Consensus 166 ~~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------- 232 (304)
+++++|-.|++.| . +...+.+.+. +|+.++.+.+.++...+.+.... ...++.++.+|+.+..
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEF--PEREVHGLAADVSDDEDRRAILDWVE 83 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhC--CCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 3678898988654 2 3455555565 89999988877666655554331 1246888889986631
Q ss_pred CCCCccceEEecchh
Q 021975 233 FASGFVDAVHAGAAL 247 (304)
Q Consensus 233 ~~~~~fD~V~~~~vl 247 (304)
-.-+.+|+|+.....
T Consensus 84 ~~~g~id~li~~ag~ 98 (257)
T PRK09242 84 DHWDGLHILVNNAGG 98 (257)
T ss_pred HHcCCCCEEEECCCC
Confidence 012468988876654
No 498
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=77.95 E-value=13 Score=33.38 Aligned_cols=90 Identities=17% Similarity=0.166 Sum_probs=51.9
Q ss_pred CeEEEEcCCc-c-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975 168 GLLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (304)
Q Consensus 168 ~~vLDiGcG~-G-~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (304)
.+|.=||+|. | .+...+.+.+...+|+++|.++...+.+++ .+ .... ...+.... -...|+|+..-
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g----~~~~-~~~~~~~~---~~~aDvViiav 74 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LG----LGDR-VTTSAAEA---VKGADLVILCV 74 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CC----CCce-ecCCHHHH---hcCCCEEEECC
Confidence 5788899886 3 345556655533489999999987776654 11 1111 11122111 13468887754
Q ss_pred hhccCCCHHHHHHHHHHhcccCcEEEE
Q 021975 246 ALHCWPSPSNAVAEISRILRSGGVFVG 272 (304)
Q Consensus 246 vl~h~~d~~~~l~~~~r~LkpgG~lvi 272 (304)
.... ...+++++...+++|+.++.
T Consensus 75 p~~~---~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 75 PVGA---SGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred CHHH---HHHHHHHHHhhCCCCCEEEe
Confidence 3221 23456777777888775543
No 499
>PRK05978 hypothetical protein; Provisional
Probab=77.82 E-value=1.5 Score=35.13 Aligned_cols=33 Identities=18% Similarity=0.438 Sum_probs=21.2
Q ss_pred eeeccCCCccccccCCCCccccccccCceeeCCCCccccCC
Q 021975 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (304)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~ 100 (304)
..+||.||+.-..... ..-.-+|+.||..|...
T Consensus 33 ~grCP~CG~G~LF~g~--------Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 33 RGRCPACGEGKLFRAF--------LKPVDHCAACGEDFTHH 65 (148)
T ss_pred cCcCCCCCCCcccccc--------cccCCCccccCCccccC
Confidence 3689999996443221 11245799999887444
No 500
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=77.65 E-value=29 Score=31.39 Aligned_cols=97 Identities=12% Similarity=0.067 Sum_probs=60.4
Q ss_pred hcccCCCeEEEEcC--CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEE-c---cCCC-C-CC
Q 021975 162 FKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-A---DVCR-L-PF 233 (304)
Q Consensus 162 l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~---d~~~-l-p~ 233 (304)
....++.+||=.|+ |.|..+..+++.. +.++++++.+++..+.+++.+.. . .++. . +... + ..
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~lGa------~--~vi~~~~~~~~~~~i~~~ 217 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNKLGF------D--DAFNYKEEPDLDAALKRY 217 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCC------c--eeEEcCCcccHHHHHHHh
Confidence 34456889998886 4577777777763 34899999888877777653211 1 1121 1 1100 0 01
Q ss_pred CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274 (304)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~ 274 (304)
..+.+|+|+-.- . ...+.+..+.|+++|+++...
T Consensus 218 ~~~gvd~v~d~~-----g--~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 218 FPNGIDIYFDNV-----G--GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CCCCcEEEEECC-----C--HHHHHHHHHHhccCcEEEEec
Confidence 124688887632 2 245788999999999988654
Done!