Query 021976
Match_columns 304
No_of_seqs 272 out of 2958
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 07:04:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 6E-37 1.3E-41 271.1 20.2 230 55-285 24-256 (493)
2 KOG0912 Thiol-disulfide isomer 100.0 3.3E-32 7.1E-37 222.0 15.9 224 61-289 1-234 (375)
3 TIGR01130 ER_PDI_fam protein d 100.0 3.2E-30 6.9E-35 237.5 25.9 224 57-285 2-235 (462)
4 PTZ00102 disulphide isomerase; 100.0 8E-30 1.7E-34 235.7 28.5 216 56-285 32-251 (477)
5 KOG4277 Uncharacterized conser 100.0 7E-28 1.5E-32 196.7 14.0 207 71-284 41-251 (468)
6 cd03006 PDI_a_EFP1_N PDIa fami 99.9 1.4E-25 3E-30 164.6 12.2 102 55-156 8-113 (113)
7 PF01216 Calsequestrin: Calseq 99.9 1.3E-23 2.8E-28 175.4 24.3 225 55-285 33-268 (383)
8 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 7.7E-25 1.7E-29 159.2 11.2 100 57-156 2-101 (101)
9 KOG0910 Thioredoxin-like prote 99.9 3.9E-24 8.5E-29 159.6 11.3 106 56-161 43-149 (150)
10 PF00085 Thioredoxin: Thioredo 99.9 2.3E-23 4.9E-28 152.0 15.1 102 58-159 1-103 (103)
11 KOG0191 Thioredoxin/protein di 99.9 4E-23 8.6E-28 185.0 19.8 201 63-267 36-255 (383)
12 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 1.2E-23 2.7E-28 153.8 11.7 100 57-156 2-104 (104)
13 PRK10996 thioredoxin 2; Provis 99.9 8.8E-23 1.9E-27 156.5 16.3 132 28-159 7-138 (139)
14 cd02996 PDI_a_ERp44 PDIa famil 99.9 2.4E-23 5.1E-28 153.3 11.9 100 57-156 2-108 (108)
15 cd03065 PDI_b_Calsequestrin_N 99.9 7.5E-23 1.6E-27 151.0 13.2 105 55-160 8-119 (120)
16 TIGR02187 GlrX_arch Glutaredox 99.9 1.3E-21 2.9E-26 161.4 20.6 190 64-262 11-214 (215)
17 PTZ00443 Thioredoxin domain-co 99.9 3E-22 6.5E-27 163.8 16.5 106 56-161 30-140 (224)
18 cd02994 PDI_a_TMX PDIa family, 99.9 1.3E-22 2.9E-27 147.4 12.5 99 57-158 2-101 (101)
19 cd03005 PDI_a_ERp46 PDIa famil 99.9 3.6E-22 7.8E-27 145.4 11.8 99 57-156 1-102 (102)
20 COG3118 Thioredoxin domain-con 99.9 3E-22 6.6E-27 165.1 11.8 107 56-162 23-132 (304)
21 PHA02278 thioredoxin-like prot 99.9 7.9E-22 1.7E-26 142.4 12.6 94 62-155 3-100 (103)
22 cd03002 PDI_a_MPD1_like PDI fa 99.9 5.8E-22 1.3E-26 146.2 11.5 99 58-156 2-108 (109)
23 PRK09381 trxA thioredoxin; Pro 99.9 2.2E-21 4.8E-26 143.0 14.3 105 56-160 3-108 (109)
24 cd02963 TRX_DnaJ TRX domain, D 99.9 9.2E-22 2E-26 145.2 12.1 100 59-158 7-110 (111)
25 cd02954 DIM1 Dim1 family; Dim1 99.9 6.2E-22 1.4E-26 143.8 10.4 91 63-153 2-94 (114)
26 cd02956 ybbN ybbN protein fami 99.9 1.8E-21 3.9E-26 140.1 12.1 92 65-156 2-95 (96)
27 cd02997 PDI_a_PDIR PDIa family 99.9 2.8E-21 6.1E-26 141.2 11.9 99 58-156 2-104 (104)
28 cd02999 PDI_a_ERp44_like PDIa 99.9 1.9E-21 4E-26 140.5 10.7 84 71-156 16-100 (100)
29 cd03001 PDI_a_P5 PDIa family, 99.9 3.8E-21 8.3E-26 140.3 12.5 99 58-156 2-102 (103)
30 cd03007 PDI_a_ERp29_N PDIa fam 99.9 1.4E-21 3.1E-26 142.3 9.8 99 57-159 2-115 (116)
31 TIGR01126 pdi_dom protein disu 99.9 4.3E-21 9.3E-26 139.7 11.3 99 61-159 1-101 (102)
32 cd02985 TRX_CDSP32 TRX family, 99.9 9.9E-21 2.1E-25 137.8 12.7 95 62-158 2-101 (103)
33 cd02962 TMX2 TMX2 family; comp 99.9 3.2E-20 7E-25 143.0 15.4 90 56-145 28-126 (152)
34 cd02948 TRX_NDPK TRX domain, T 99.9 1.4E-20 3E-25 136.8 12.6 96 61-158 5-101 (102)
35 cd02993 PDI_a_APS_reductase PD 99.9 9.2E-21 2E-25 139.5 11.3 100 57-156 2-109 (109)
36 cd02965 HyaE HyaE family; HyaE 99.8 2.2E-20 4.7E-25 134.7 11.7 98 56-153 10-109 (111)
37 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 2.6E-20 5.6E-25 136.1 10.6 98 58-156 2-104 (104)
38 cd02998 PDI_a_ERp38 PDIa famil 99.8 6.5E-20 1.4E-24 134.2 10.6 99 58-156 2-105 (105)
39 cd03000 PDI_a_TMX3 PDIa family 99.8 1.4E-19 3E-24 132.2 11.3 94 64-159 7-103 (104)
40 TIGR01068 thioredoxin thioredo 99.8 2.6E-19 5.6E-24 129.9 12.6 99 61-159 1-100 (101)
41 cd02961 PDI_a_family Protein D 99.8 8.9E-20 1.9E-24 132.1 10.0 97 60-156 2-101 (101)
42 cd02989 Phd_like_TxnDC9 Phosdu 99.8 4E-19 8.8E-24 131.1 13.3 90 56-146 4-94 (113)
43 cd02957 Phd_like Phosducin (Ph 99.8 2.5E-19 5.5E-24 132.7 12.1 89 56-146 4-95 (113)
44 PLN00410 U5 snRNP protein, DIM 99.8 4.8E-19 1E-23 133.7 13.0 99 62-160 10-120 (142)
45 KOG0907 Thioredoxin [Posttrans 99.8 2.9E-19 6.2E-24 129.0 11.1 86 71-158 19-104 (106)
46 cd02953 DsbDgamma DsbD gamma f 99.8 1.6E-19 3.4E-24 131.9 9.5 94 64-157 2-104 (104)
47 cd02950 TxlA TRX-like protein 99.8 6.4E-19 1.4E-23 135.4 12.9 99 63-161 10-111 (142)
48 KOG1731 FAD-dependent sulfhydr 99.8 8.3E-19 1.8E-23 155.7 14.0 216 54-274 37-286 (606)
49 cd02949 TRX_NTR TRX domain, no 99.8 1.9E-18 4.2E-23 124.4 12.3 87 71-157 11-97 (97)
50 cd02984 TRX_PICOT TRX domain, 99.8 1.5E-18 3.3E-23 125.0 11.7 93 63-156 2-96 (97)
51 PTZ00051 thioredoxin; Provisio 99.8 2.8E-18 6.2E-23 123.9 11.6 90 62-153 7-96 (98)
52 cd02992 PDI_a_QSOX PDIa family 99.8 4.1E-18 8.9E-23 126.1 11.5 97 57-153 2-109 (114)
53 TIGR00424 APS_reduc 5'-adenyly 99.8 3.5E-18 7.5E-23 153.3 12.8 106 53-158 348-461 (463)
54 KOG0190 Protein disulfide isom 99.8 1.2E-18 2.5E-23 155.3 8.4 114 46-161 355-474 (493)
55 PLN02309 5'-adenylylsulfate re 99.8 5.7E-18 1.2E-22 151.8 12.9 107 53-159 342-456 (457)
56 PTZ00102 disulphide isomerase; 99.8 7.6E-18 1.7E-22 155.9 13.4 116 49-164 350-469 (477)
57 cd02986 DLP Dim1 family, Dim1- 99.8 1.3E-17 2.8E-22 120.1 10.9 78 64-141 3-82 (114)
58 PTZ00062 glutaredoxin; Provisi 99.8 1.4E-16 3E-21 128.4 17.9 163 62-235 5-173 (204)
59 TIGR01295 PedC_BrcD bacterioci 99.7 2.9E-17 6.3E-22 122.6 12.7 100 56-157 6-121 (122)
60 cd02987 Phd_like_Phd Phosducin 99.7 2.1E-17 4.6E-22 131.1 12.6 102 55-158 61-173 (175)
61 cd02947 TRX_family TRX family; 99.7 7.2E-17 1.6E-21 114.7 12.5 92 64-156 1-92 (93)
62 cd02951 SoxW SoxW family; SoxW 99.7 4.3E-17 9.3E-22 123.1 11.9 98 64-161 4-120 (125)
63 KOG0908 Thioredoxin-like prote 99.7 2.2E-17 4.7E-22 132.1 10.5 101 61-163 7-109 (288)
64 cd02975 PfPDO_like_N Pyrococcu 99.7 5.6E-17 1.2E-21 119.7 11.4 95 65-160 14-110 (113)
65 PRK15412 thiol:disulfide inter 99.7 4.1E-15 8.9E-20 119.8 16.6 88 71-161 66-177 (185)
66 cd02988 Phd_like_VIAF Phosduci 99.7 1.2E-15 2.6E-20 122.6 12.2 99 55-157 81-189 (192)
67 PRK14018 trifunctional thiored 99.7 2E-15 4.4E-20 137.2 14.8 89 71-159 54-172 (521)
68 cd02982 PDI_b'_family Protein 99.6 2.1E-15 4.6E-20 109.8 10.0 88 72-159 11-102 (103)
69 PRK03147 thiol-disulfide oxido 99.6 5.9E-15 1.3E-19 117.9 13.2 103 57-159 45-171 (173)
70 TIGR00411 redox_disulf_1 small 99.6 5.4E-15 1.2E-19 102.9 11.0 80 76-159 2-81 (82)
71 TIGR02738 TrbB type-F conjugat 99.6 1.4E-14 3E-19 112.1 13.3 87 71-159 48-152 (153)
72 cd02952 TRP14_like Human TRX-r 99.6 4.5E-15 9.8E-20 109.3 8.4 78 62-139 8-102 (119)
73 KOG0191 Thioredoxin/protein di 99.6 1.8E-14 3.8E-19 129.3 11.5 182 57-241 145-355 (383)
74 TIGR00385 dsbE periplasmic pro 99.6 2E-13 4.4E-18 108.8 15.1 89 70-161 60-172 (173)
75 cd02959 ERp19 Endoplasmic reti 99.6 8.4E-15 1.8E-19 108.7 6.5 96 64-159 10-112 (117)
76 PRK13728 conjugal transfer pro 99.5 2E-13 4.3E-18 107.4 12.5 84 77-162 73-173 (181)
77 TIGR01130 ER_PDI_fam protein d 99.5 1.2E-12 2.6E-17 120.7 20.0 207 56-268 217-458 (462)
78 PF13098 Thioredoxin_2: Thiore 99.5 6E-14 1.3E-18 103.7 8.1 86 71-156 3-112 (112)
79 cd03010 TlpA_like_DsbE TlpA-li 99.5 3.3E-13 7.2E-18 102.1 10.5 79 72-152 24-126 (127)
80 PHA02125 thioredoxin-like prot 99.5 4.6E-13 1E-17 91.2 10.0 70 77-155 2-72 (75)
81 cd02955 SSP411 TRX domain, SSP 99.5 3.6E-13 7.8E-18 100.3 10.2 97 62-158 4-117 (124)
82 TIGR02187 GlrX_arch Glutaredox 99.5 4.1E-13 9E-18 110.8 11.4 94 61-158 120-214 (215)
83 PRK00293 dipZ thiol:disulfide 99.5 2.8E-13 6.1E-18 126.7 11.5 98 62-160 459-570 (571)
84 TIGR00412 redox_disulf_2 small 99.5 3.7E-13 7.9E-18 91.9 9.1 72 78-156 3-75 (76)
85 cd03008 TryX_like_RdCVF Trypar 99.5 3.1E-13 6.6E-18 103.4 9.6 71 72-142 24-128 (146)
86 PF13848 Thioredoxin_6: Thiore 99.5 1.6E-11 3.5E-16 98.9 20.1 167 90-262 7-184 (184)
87 TIGR01626 ytfJ_HI0045 conserve 99.4 1.3E-12 2.9E-17 103.4 11.9 89 65-156 51-176 (184)
88 TIGR02740 TraF-like TraF-like 99.4 1.8E-12 3.9E-17 110.1 12.2 88 72-161 165-265 (271)
89 cd03009 TryX_like_TryX_NRX Try 99.4 1E-12 2.2E-17 100.0 9.6 70 72-141 17-114 (131)
90 PF13905 Thioredoxin_8: Thiore 99.4 2E-12 4.2E-17 92.6 9.5 66 73-138 1-94 (95)
91 PRK11509 hydrogenase-1 operon 99.4 1E-11 2.2E-16 92.4 12.8 107 59-165 20-129 (132)
92 cd02964 TryX_like_family Trypa 99.4 1.9E-12 4.1E-17 98.6 9.1 69 72-140 16-113 (132)
93 cd03011 TlpA_like_ScsD_MtbDsbE 99.4 2.6E-12 5.6E-17 96.6 9.4 93 60-154 7-120 (123)
94 PLN02919 haloacid dehalogenase 99.4 4.7E-12 1E-16 126.1 11.8 89 72-160 419-536 (1057)
95 cd02966 TlpA_like_family TlpA- 99.4 5.1E-12 1.1E-16 93.3 9.2 74 72-145 18-116 (116)
96 PTZ00056 glutathione peroxidas 99.3 1E-11 2.2E-16 101.0 10.9 90 72-161 38-179 (199)
97 PLN02399 phospholipid hydroper 99.3 1.5E-11 3.2E-16 101.7 11.7 103 59-161 85-235 (236)
98 cd03012 TlpA_like_DipZ_like Tl 99.3 1.6E-11 3.5E-16 92.7 9.4 75 72-146 22-125 (126)
99 TIGR02661 MauD methylamine deh 99.3 4.5E-11 9.8E-16 96.6 11.6 85 71-159 72-178 (189)
100 cd02973 TRX_GRX_like Thioredox 99.3 1.4E-11 3.1E-16 82.0 7.2 60 76-138 2-61 (67)
101 PF08534 Redoxin: Redoxin; In 99.3 4.7E-11 1E-15 92.5 11.0 78 71-148 26-136 (146)
102 cd02967 mauD Methylamine utili 99.3 3.6E-11 7.7E-16 89.1 9.1 68 72-139 20-108 (114)
103 cd03026 AhpF_NTD_C TRX-GRX-lik 99.3 6.5E-11 1.4E-15 83.1 9.7 77 72-153 11-87 (89)
104 cd02981 PDI_b_family Protein D 99.2 1.1E-10 2.3E-15 83.9 10.8 95 165-263 2-97 (97)
105 cd02958 UAS UAS family; UAS is 99.2 1.5E-10 3.2E-15 85.7 11.7 93 68-160 12-111 (114)
106 PLN02412 probable glutathione 99.2 1.2E-10 2.7E-15 92.1 11.1 90 72-161 28-165 (167)
107 PF13848 Thioredoxin_6: Thiore 99.2 8.8E-11 1.9E-15 94.6 10.2 94 188-285 1-96 (184)
108 COG4232 Thiol:disulfide interc 99.2 1.4E-10 3E-15 105.1 11.4 101 59-160 457-568 (569)
109 cd00340 GSH_Peroxidase Glutath 99.2 1E-10 2.2E-15 91.3 8.8 83 72-155 21-151 (152)
110 TIGR02540 gpx7 putative glutat 99.2 2.4E-10 5.2E-15 89.3 10.7 88 72-159 21-152 (153)
111 cd03066 PDI_b_Calsequestrin_mi 99.2 4E-10 8.7E-15 81.6 11.1 97 164-264 2-101 (102)
112 cd02960 AGR Anterior Gradient 99.2 9.9E-11 2.1E-15 87.1 7.3 81 66-147 16-100 (130)
113 cd03069 PDI_b_ERp57 PDIb famil 99.1 5.8E-10 1.2E-14 81.0 10.2 95 164-263 2-103 (104)
114 COG2143 Thioredoxin-related pr 99.1 3.8E-09 8.2E-14 79.1 13.5 113 65-177 34-166 (182)
115 KOG0914 Thioredoxin-like prote 99.1 3.4E-10 7.5E-15 89.2 7.7 88 57-144 125-222 (265)
116 KOG0913 Thiol-disulfide isomer 99.1 2.4E-11 5.3E-16 97.0 1.2 102 56-160 24-126 (248)
117 PF13899 Thioredoxin_7: Thiore 99.1 4.7E-10 1E-14 77.8 6.9 69 66-135 10-81 (82)
118 smart00594 UAS UAS domain. 99.1 2.5E-09 5.4E-14 80.1 11.3 88 69-156 23-121 (122)
119 cd02969 PRX_like1 Peroxiredoxi 99.1 3.9E-09 8.4E-14 84.0 12.4 93 72-164 24-156 (171)
120 cd03007 PDI_a_ERp29_N PDIa fam 99.0 4.8E-09 1E-13 76.7 10.5 94 165-263 4-115 (116)
121 PTZ00256 glutathione peroxidas 99.0 4.5E-09 9.8E-14 84.5 11.3 89 72-160 39-181 (183)
122 cd03068 PDI_b_ERp72 PDIb famil 99.0 8.1E-09 1.8E-13 75.2 10.6 97 163-263 1-107 (107)
123 cd03017 PRX_BCP Peroxiredoxin 99.0 6.2E-09 1.3E-13 79.9 10.4 85 72-156 22-139 (140)
124 PF00085 Thioredoxin: Thioredo 98.9 6.7E-09 1.5E-13 75.1 9.0 91 169-263 5-103 (103)
125 cd03004 PDI_a_ERdj5_C PDIa fam 98.9 1.1E-08 2.4E-13 74.3 10.2 94 163-260 2-104 (104)
126 cd03003 PDI_a_ERdj5_N PDIa fam 98.9 1.8E-08 3.8E-13 72.8 10.6 93 163-260 2-101 (101)
127 COG0526 TrxA Thiol-disulfide i 98.9 6.7E-09 1.4E-13 76.6 8.4 83 73-155 32-119 (127)
128 cd03006 PDI_a_EFP1_N PDIa fami 98.9 1.5E-08 3.3E-13 74.3 9.8 94 162-260 9-113 (113)
129 cd02996 PDI_a_ERp44 PDIa famil 98.9 4E-08 8.6E-13 71.9 10.7 93 164-260 3-108 (108)
130 TIGR02196 GlrX_YruB Glutaredox 98.8 2.1E-08 4.6E-13 67.7 8.3 68 77-156 2-73 (74)
131 KOG2501 Thioredoxin, nucleored 98.8 1E-08 2.2E-13 77.9 6.8 69 72-140 32-129 (157)
132 TIGR03143 AhpF_homolog putativ 98.8 5.9E-07 1.3E-11 84.7 19.9 179 72-260 365-554 (555)
133 PF07912 ERp29_N: ERp29, N-ter 98.8 1.5E-07 3.2E-12 68.1 12.0 105 56-162 4-121 (126)
134 PF00578 AhpC-TSA: AhpC/TSA fa 98.8 3.7E-08 8E-13 73.9 9.6 69 72-140 24-122 (124)
135 cd03015 PRX_Typ2cys Peroxiredo 98.8 6.6E-08 1.4E-12 77.1 11.2 88 72-159 28-156 (173)
136 PRK00522 tpx lipid hydroperoxi 98.8 5.6E-08 1.2E-12 76.9 10.6 85 72-157 43-166 (167)
137 KOG0910 Thioredoxin-like prote 98.8 4.1E-08 8.8E-13 74.0 9.0 93 167-263 47-147 (150)
138 TIGR03137 AhpC peroxiredoxin. 98.8 7.2E-08 1.6E-12 77.8 11.1 86 72-157 30-153 (187)
139 cd02970 PRX_like2 Peroxiredoxi 98.8 7.3E-08 1.6E-12 74.7 10.3 43 73-115 24-67 (149)
140 KOG0911 Glutaredoxin-related p 98.8 6.6E-08 1.4E-12 77.3 10.0 165 70-235 14-199 (227)
141 cd03065 PDI_b_Calsequestrin_N 98.8 9.7E-08 2.1E-12 70.7 10.3 94 163-262 10-117 (120)
142 PRK09437 bcp thioredoxin-depen 98.8 9.7E-08 2.1E-12 74.6 11.0 82 72-153 29-146 (154)
143 PRK10606 btuE putative glutath 98.8 7E-08 1.5E-12 77.0 10.0 118 72-200 24-174 (183)
144 cd03002 PDI_a_MPD1_like PDI fa 98.8 1E-07 2.2E-12 69.7 10.0 94 164-261 2-109 (109)
145 KOG2603 Oligosaccharyltransfer 98.7 1.1E-07 2.4E-12 79.5 10.7 112 54-165 38-171 (331)
146 cd03001 PDI_a_P5 PDIa family, 98.7 1.9E-07 4E-12 67.6 10.4 92 165-260 3-102 (103)
147 cd01659 TRX_superfamily Thiore 98.7 7.1E-08 1.5E-12 62.7 7.3 60 77-137 1-63 (69)
148 cd03014 PRX_Atyp2cys Peroxired 98.7 1.7E-07 3.8E-12 72.2 9.8 74 72-146 25-129 (143)
149 PF13728 TraF: F plasmid trans 98.7 2.8E-07 6.1E-12 75.7 11.2 83 72-156 119-214 (215)
150 TIGR01126 pdi_dom protein disu 98.7 2.8E-07 6.1E-12 66.4 10.1 90 170-263 3-101 (102)
151 TIGR02200 GlrX_actino Glutared 98.6 2.2E-07 4.7E-12 63.4 8.2 70 77-157 2-76 (77)
152 PRK13190 putative peroxiredoxi 98.6 4.9E-07 1.1E-11 73.8 11.3 89 72-160 26-154 (202)
153 cd03018 PRX_AhpE_like Peroxire 98.6 4.2E-07 9E-12 70.5 10.5 75 73-147 28-134 (149)
154 PRK10382 alkyl hydroperoxide r 98.6 6.6E-07 1.4E-11 71.9 11.7 88 72-159 30-155 (187)
155 PF02114 Phosducin: Phosducin; 98.6 2.9E-07 6.4E-12 77.6 10.1 103 56-160 125-238 (265)
156 PF13192 Thioredoxin_3: Thiore 98.6 5.8E-07 1.3E-11 61.2 9.5 73 78-157 3-76 (76)
157 cd02971 PRX_family Peroxiredox 98.6 4.4E-07 9.5E-12 69.5 9.6 77 72-148 21-131 (140)
158 cd02994 PDI_a_TMX PDIa family, 98.6 8.1E-07 1.8E-11 64.0 10.5 91 164-262 3-101 (101)
159 cd02968 SCO SCO (an acronym fo 98.6 2.7E-07 5.8E-12 71.0 8.1 43 72-114 21-68 (142)
160 cd02961 PDI_a_family Protein D 98.6 6.9E-07 1.5E-11 63.9 9.7 89 169-260 4-101 (101)
161 PRK15000 peroxidase; Provision 98.6 9.6E-07 2.1E-11 71.9 11.3 87 72-158 33-160 (200)
162 PHA02278 thioredoxin-like prot 98.6 9.1E-07 2E-11 63.8 9.9 88 168-259 2-100 (103)
163 PRK09381 trxA thioredoxin; Pro 98.5 1.4E-06 3.1E-11 63.7 10.6 97 162-263 3-107 (109)
164 cd02993 PDI_a_APS_reductase PD 98.5 1.1E-06 2.4E-11 64.3 9.9 93 164-260 3-109 (109)
165 PRK10996 thioredoxin 2; Provis 98.5 1.3E-06 2.9E-11 66.8 10.5 91 169-263 41-138 (139)
166 cd02995 PDI_a_PDI_a'_C PDIa fa 98.5 1.3E-06 2.8E-11 63.1 9.5 93 164-260 2-104 (104)
167 cd03005 PDI_a_ERp46 PDIa famil 98.5 1.3E-06 2.9E-11 62.9 9.4 90 165-260 3-102 (102)
168 cd03016 PRX_1cys Peroxiredoxin 98.5 2.1E-06 4.6E-11 70.2 11.5 85 75-159 28-153 (203)
169 cd02948 TRX_NDPK TRX domain, T 98.5 2.7E-06 5.7E-11 61.5 10.7 92 166-262 3-101 (102)
170 cd02953 DsbDgamma DsbD gamma f 98.5 1.1E-06 2.3E-11 63.8 8.6 88 171-261 2-104 (104)
171 KOG1672 ATP binding protein [P 98.5 5.1E-07 1.1E-11 70.4 7.1 84 62-146 73-156 (211)
172 cd02956 ybbN ybbN protein fami 98.5 1.6E-06 3.6E-11 61.8 9.2 78 180-261 12-96 (96)
173 cd02999 PDI_a_ERp44_like PDIa 98.5 8.6E-07 1.9E-11 63.8 7.7 77 179-260 17-100 (100)
174 PF03190 Thioredox_DsbH: Prote 98.5 6.6E-07 1.4E-11 69.2 7.3 82 60-141 24-117 (163)
175 cd02998 PDI_a_ERp38 PDIa famil 98.4 2E-06 4.3E-11 62.2 9.3 92 165-260 3-105 (105)
176 cd02991 UAS_ETEA UAS family, E 98.4 3.5E-06 7.6E-11 62.1 10.5 89 71-160 15-113 (116)
177 TIGR02739 TraF type-F conjugat 98.4 3.4E-06 7.5E-11 70.5 11.5 86 73-160 150-248 (256)
178 cd02989 Phd_like_TxnDC9 Phosdu 98.4 6E-06 1.3E-10 60.8 11.4 94 163-260 5-112 (113)
179 cd02997 PDI_a_PDIR PDIa family 98.4 2.8E-06 6.2E-11 61.4 9.5 91 165-260 3-104 (104)
180 TIGR01068 thioredoxin thioredo 98.4 4.4E-06 9.6E-11 59.8 10.1 90 170-263 3-100 (101)
181 PTZ00443 Thioredoxin domain-co 98.4 3.7E-06 8E-11 69.3 10.6 98 162-264 30-139 (224)
182 TIGR02180 GRX_euk Glutaredoxin 98.4 8.7E-07 1.9E-11 61.5 5.8 58 77-138 1-63 (84)
183 cd02963 TRX_DnaJ TRX domain, D 98.4 4E-06 8.8E-11 61.5 9.5 80 179-262 23-110 (111)
184 PTZ00137 2-Cys peroxiredoxin; 98.4 6.4E-06 1.4E-10 69.3 11.6 87 72-158 97-223 (261)
185 PRK13189 peroxiredoxin; Provis 98.4 6E-06 1.3E-10 68.3 11.2 88 72-159 34-162 (222)
186 PRK13599 putative peroxiredoxi 98.4 6.8E-06 1.5E-10 67.6 11.3 88 72-159 27-155 (215)
187 cd02981 PDI_b_family Protein D 98.3 5E-06 1.1E-10 59.4 9.3 89 63-158 7-96 (97)
188 PRK11200 grxA glutaredoxin 1; 98.3 4E-06 8.7E-11 58.3 8.6 77 76-161 2-84 (85)
189 PRK13191 putative peroxiredoxi 98.3 7.7E-06 1.7E-10 67.3 11.3 88 72-159 32-160 (215)
190 PRK13703 conjugal pilus assemb 98.3 8.3E-06 1.8E-10 67.9 11.4 86 73-160 143-241 (248)
191 PF14595 Thioredoxin_9: Thiore 98.3 3.3E-06 7.1E-11 63.5 7.5 84 61-145 28-116 (129)
192 PTZ00051 thioredoxin; Provisio 98.3 1E-05 2.2E-10 57.8 9.4 89 164-257 2-96 (98)
193 KOG4277 Uncharacterized conser 98.3 4E-06 8.7E-11 69.9 8.0 91 179-274 42-142 (468)
194 TIGR00424 APS_reduc 5'-adenyly 98.3 1.1E-05 2.4E-10 73.3 11.6 97 162-262 351-461 (463)
195 PRK10877 protein disulfide iso 98.3 8E-06 1.7E-10 68.0 9.8 80 73-159 107-230 (232)
196 cd02954 DIM1 Dim1 family; Dim1 98.2 7.5E-06 1.6E-10 59.8 8.3 69 170-241 2-79 (114)
197 cd02985 TRX_CDSP32 TRX family, 98.2 1.7E-05 3.8E-10 57.3 10.1 89 169-262 2-101 (103)
198 cd03072 PDI_b'_ERp44 PDIb' fam 98.2 1.8E-05 3.8E-10 58.0 10.0 102 58-161 1-109 (111)
199 PLN02309 5'-adenylylsulfate re 98.2 1.2E-05 2.6E-10 73.0 10.7 96 163-262 346-455 (457)
200 cd03000 PDI_a_TMX3 PDIa family 98.2 1.7E-05 3.6E-10 57.5 9.3 86 171-262 7-102 (104)
201 cd02983 P5_C P5 family, C-term 98.2 1.8E-05 4E-10 59.6 9.7 102 162-264 2-115 (130)
202 PF06110 DUF953: Eukaryotic pr 98.2 1.3E-05 2.9E-10 58.9 8.4 74 64-137 6-99 (119)
203 cd02965 HyaE HyaE family; HyaE 98.2 1.8E-05 3.9E-10 57.4 8.9 98 153-257 3-109 (111)
204 PTZ00253 tryparedoxin peroxida 98.2 3.3E-05 7.2E-10 63.0 11.4 87 72-158 35-162 (199)
205 cd02976 NrdH NrdH-redoxin (Nrd 98.2 1.8E-05 3.9E-10 52.9 8.1 67 77-155 2-72 (73)
206 PF07449 HyaE: Hydrogenase-1 e 98.1 2.4E-05 5.2E-10 56.2 8.8 95 56-151 9-106 (107)
207 cd02950 TxlA TRX-like protein 98.1 2E-05 4.4E-10 60.5 9.2 89 171-262 11-108 (142)
208 cd02982 PDI_b'_family Protein 98.1 3.3E-05 7.2E-10 55.7 9.9 82 180-262 12-101 (103)
209 KOG3414 Component of the U4/U6 98.1 2E-05 4.3E-10 57.0 8.3 78 63-140 11-90 (142)
210 KOG3425 Uncharacterized conser 98.1 1.1E-05 2.3E-10 58.0 6.8 73 64-136 13-104 (128)
211 cd02957 Phd_like Phosducin (Ph 98.1 3E-05 6.5E-10 57.1 9.5 92 163-260 5-112 (113)
212 cd02983 P5_C P5 family, C-term 98.1 0.0001 2.2E-09 55.6 12.1 108 57-164 3-119 (130)
213 PLN00410 U5 snRNP protein, DIM 98.1 5.6E-05 1.2E-09 57.4 10.6 96 164-262 5-118 (142)
214 cd02949 TRX_NTR TRX domain, no 98.1 4.5E-05 9.7E-10 54.4 9.3 83 175-261 8-97 (97)
215 cd03020 DsbA_DsbC_DsbG DsbA fa 98.1 2.1E-05 4.5E-10 64.1 8.3 76 73-156 77-197 (197)
216 cd02947 TRX_family TRX family; 98.0 4.7E-05 1E-09 53.1 8.7 86 172-261 2-93 (93)
217 cd03073 PDI_b'_ERp72_ERp57 PDI 98.0 5.4E-05 1.2E-09 55.4 9.1 99 60-159 3-110 (111)
218 cd02984 TRX_PICOT TRX domain, 98.0 8E-05 1.7E-09 53.0 9.7 86 170-260 2-96 (97)
219 PF02966 DIM1: Mitosis protein 98.0 0.00016 3.5E-09 53.2 11.1 77 63-140 8-87 (133)
220 TIGR03143 AhpF_homolog putativ 98.0 5.2E-05 1.1E-09 71.7 11.0 91 61-156 463-554 (555)
221 COG3118 Thioredoxin domain-con 98.0 6.3E-05 1.4E-09 63.3 10.0 100 163-266 24-132 (304)
222 cd02988 Phd_like_VIAF Phosduci 98.0 0.00012 2.5E-09 59.2 11.3 98 162-263 82-191 (192)
223 cd03067 PDI_b_PDIR_N PDIb fami 98.0 5.3E-05 1.1E-09 52.7 7.8 95 63-158 9-110 (112)
224 cd02987 Phd_like_Phd Phosducin 98.0 0.0001 2.2E-09 58.6 10.3 98 162-263 62-174 (175)
225 cd02975 PfPDO_like_N Pyrococcu 98.0 0.00014 2.9E-09 53.6 10.2 87 173-262 15-108 (113)
226 cd03023 DsbA_Com1_like DsbA fa 97.9 9.7E-05 2.1E-09 57.2 9.8 32 72-103 4-35 (154)
227 PF11009 DUF2847: Protein of u 97.9 0.00018 3.9E-09 51.4 10.0 91 62-152 6-104 (105)
228 TIGR02183 GRXA Glutaredoxin, G 97.9 9.9E-05 2.1E-09 51.4 8.5 76 77-161 2-83 (86)
229 PRK11657 dsbG disulfide isomer 97.9 0.00011 2.4E-09 61.9 10.0 82 73-157 117-249 (251)
230 PRK15317 alkyl hydroperoxide r 97.9 0.0021 4.5E-08 60.4 19.5 170 73-264 19-198 (517)
231 PRK15317 alkyl hydroperoxide r 97.8 0.00015 3.2E-09 68.1 10.9 95 61-160 103-198 (517)
232 KOG0912 Thiol-disulfide isomer 97.8 5.5E-05 1.2E-09 63.4 6.8 99 170-271 3-113 (375)
233 PF13462 Thioredoxin_4: Thiore 97.8 0.00036 7.8E-09 54.6 11.4 82 72-158 11-162 (162)
234 PF00462 Glutaredoxin: Glutare 97.8 0.00016 3.5E-09 46.5 7.8 54 77-138 1-58 (60)
235 KOG0907 Thioredoxin [Posttrans 97.8 0.00028 6E-09 51.1 9.6 79 180-263 21-105 (106)
236 cd02951 SoxW SoxW family; SoxW 97.8 0.00025 5.4E-09 53.1 9.2 90 170-262 3-117 (125)
237 cd02986 DLP Dim1 family, Dim1- 97.8 0.00052 1.1E-08 49.9 10.3 88 171-261 3-108 (114)
238 PRK11509 hydrogenase-1 operon 97.8 0.00041 9E-09 51.9 10.0 92 169-264 23-124 (132)
239 PF07912 ERp29_N: ERp29, N-ter 97.7 0.001 2.2E-08 48.4 11.3 95 169-264 10-119 (126)
240 TIGR02190 GlrX-dom Glutaredoxi 97.7 0.00027 5.9E-09 48.3 8.2 58 73-138 6-66 (79)
241 cd03419 GRX_GRXh_1_2_like Glut 97.7 0.00013 2.9E-09 50.1 5.9 56 77-138 2-62 (82)
242 cd02992 PDI_a_QSOX PDIa family 97.7 0.0006 1.3E-08 50.2 9.7 91 163-257 2-109 (114)
243 cd02962 TMX2 TMX2 family; comp 97.7 0.0007 1.5E-08 52.4 10.3 85 163-249 29-126 (152)
244 cd03070 PDI_b_ERp44 PDIb famil 97.7 0.00038 8.1E-09 48.5 7.8 83 164-252 1-85 (91)
245 TIGR02194 GlrX_NrdH Glutaredox 97.6 0.00035 7.7E-09 46.8 7.4 66 78-154 2-70 (72)
246 TIGR03140 AhpF alkyl hydropero 97.6 0.01 2.2E-07 55.7 19.4 170 73-263 19-198 (515)
247 cd02066 GRX_family Glutaredoxi 97.6 0.00036 7.7E-09 46.2 6.5 57 77-141 2-62 (72)
248 PF05768 DUF836: Glutaredoxin- 97.5 0.00034 7.4E-09 48.1 6.0 79 76-157 1-81 (81)
249 TIGR03140 AhpF alkyl hydropero 97.5 0.0011 2.4E-08 62.1 11.3 96 59-159 102-198 (515)
250 PRK10329 glutaredoxin-like pro 97.5 0.0021 4.5E-08 44.1 9.7 72 77-160 3-77 (81)
251 cd03019 DsbA_DsbA DsbA family, 97.5 0.00093 2E-08 53.2 9.2 38 72-109 14-51 (178)
252 cd03066 PDI_b_Calsequestrin_mi 97.5 0.0028 6.2E-08 45.6 10.7 91 62-159 7-100 (102)
253 TIGR01295 PedC_BrcD bacterioci 97.4 0.0021 4.5E-08 47.9 9.6 91 169-261 12-121 (122)
254 TIGR02189 GlrX-like_plant Glut 97.4 0.00074 1.6E-08 48.3 6.7 54 77-138 10-70 (99)
255 PHA03050 glutaredoxin; Provisi 97.3 0.00065 1.4E-08 49.4 6.1 66 66-138 6-78 (108)
256 PTZ00062 glutaredoxin; Provisi 97.3 0.0021 4.5E-08 52.3 9.3 88 168-265 4-95 (204)
257 TIGR02181 GRX_bact Glutaredoxi 97.3 0.00069 1.5E-08 46.2 5.7 54 77-138 1-58 (79)
258 cd03418 GRX_GRXb_1_3_like Glut 97.3 0.0012 2.6E-08 44.4 6.7 54 77-138 2-60 (75)
259 cd03029 GRX_hybridPRX5 Glutare 97.3 0.0035 7.6E-08 41.8 8.8 66 77-156 3-71 (72)
260 cd03069 PDI_b_ERp57 PDIb famil 97.3 0.0047 1E-07 44.6 10.0 90 62-159 7-103 (104)
261 PF01216 Calsequestrin: Calseq 97.2 0.12 2.5E-06 44.9 21.3 182 72-262 164-366 (383)
262 cd03027 GRX_DEP Glutaredoxin ( 97.2 0.0018 3.8E-08 43.4 6.8 54 77-138 3-60 (73)
263 PRK10954 periplasmic protein d 97.2 0.0029 6.3E-08 51.9 8.8 39 73-111 37-78 (207)
264 PRK00293 dipZ thiol:disulfide 97.2 0.0036 7.7E-08 59.3 10.5 97 164-263 454-569 (571)
265 cd02972 DsbA_family DsbA famil 97.1 0.0016 3.6E-08 45.7 6.1 59 77-135 1-91 (98)
266 cd02952 TRP14_like Human TRX-r 97.1 0.0066 1.4E-07 44.8 9.1 87 167-260 6-118 (119)
267 KOG0908 Thioredoxin-like prote 97.1 0.0046 9.9E-08 50.7 8.8 94 163-261 2-103 (288)
268 COG1225 Bcp Peroxiredoxin [Pos 97.0 0.021 4.6E-07 44.1 11.6 88 72-159 29-155 (157)
269 PF00837 T4_deiodinase: Iodoth 97.0 0.0091 2E-07 49.1 10.0 60 53-112 79-141 (237)
270 TIGR00365 monothiol glutaredox 97.0 0.0047 1E-07 43.9 7.4 65 65-138 4-76 (97)
271 KOG3170 Conserved phosducin-li 96.9 0.0073 1.6E-07 47.8 8.2 107 56-167 91-207 (240)
272 KOG2640 Thioredoxin [Function 96.9 0.0015 3.2E-08 55.3 4.5 92 68-161 69-163 (319)
273 TIGR00411 redox_disulf_1 small 96.8 0.014 3E-07 39.8 8.6 72 183-262 2-80 (82)
274 COG0695 GrxC Glutaredoxin and 96.8 0.0046 9.9E-08 42.3 6.0 53 77-137 3-61 (80)
275 cd03072 PDI_b'_ERp44 PDIb' fam 96.8 0.011 2.4E-07 43.2 7.9 93 170-263 6-107 (111)
276 TIGR00412 redox_disulf_2 small 96.7 0.014 3.1E-07 39.4 7.7 68 185-260 3-75 (76)
277 cd03067 PDI_b_PDIR_N PDIb fami 96.5 0.021 4.5E-07 40.1 7.5 98 164-262 3-110 (112)
278 PRK10638 glutaredoxin 3; Provi 96.5 0.012 2.5E-07 40.5 6.4 54 77-138 4-61 (83)
279 cd03028 GRX_PICOT_like Glutare 96.5 0.0096 2.1E-07 41.7 5.7 48 83-138 21-72 (90)
280 cd03011 TlpA_like_ScsD_MtbDsbE 96.4 0.015 3.3E-07 43.1 7.0 75 180-258 20-120 (123)
281 PF13743 Thioredoxin_5: Thiore 96.4 0.0014 3.1E-08 52.2 1.2 156 79-255 2-173 (176)
282 PF13098 Thioredoxin_2: Thiore 96.3 0.017 3.7E-07 42.0 6.8 79 179-260 4-112 (112)
283 PRK14018 trifunctional thiored 96.2 0.014 3E-07 54.2 7.0 47 215-264 127-173 (521)
284 KOG3171 Conserved phosducin-li 96.2 0.013 2.9E-07 46.9 5.8 103 56-160 138-251 (273)
285 TIGR02740 TraF-like TraF-like 96.1 0.055 1.2E-06 46.3 9.5 80 180-262 166-262 (271)
286 PF11009 DUF2847: Protein of u 96.1 0.026 5.6E-07 40.4 6.1 90 165-256 2-104 (105)
287 cd03010 TlpA_like_DsbE TlpA-li 96.0 0.025 5.3E-07 42.3 6.1 74 180-256 25-126 (127)
288 COG4232 Thiol:disulfide interc 95.9 0.04 8.6E-07 51.1 8.3 96 165-263 457-567 (569)
289 PRK03147 thiol-disulfide oxido 95.9 0.065 1.4E-06 42.3 8.8 46 214-262 125-170 (173)
290 cd02955 SSP411 TRX domain, SSP 95.9 0.066 1.4E-06 39.9 8.0 70 170-242 5-92 (124)
291 cd02958 UAS UAS family; UAS is 95.9 0.14 3.1E-06 37.4 9.8 87 173-262 10-109 (114)
292 PRK10824 glutaredoxin-4; Provi 95.7 0.033 7.1E-07 40.8 5.7 66 64-138 6-79 (115)
293 smart00594 UAS UAS domain. 95.7 0.15 3.2E-06 37.9 9.4 85 173-260 20-121 (122)
294 TIGR00385 dsbE periplasmic pro 95.7 0.042 9.2E-07 43.6 6.7 82 179-263 62-170 (173)
295 cd03073 PDI_b'_ERp72_ERp57 PDI 95.6 0.12 2.5E-06 37.8 8.3 67 195-262 36-109 (111)
296 cd03068 PDI_b_ERp72 PDIb famil 95.6 0.27 5.8E-06 35.6 10.0 90 62-158 7-106 (107)
297 COG1331 Highly conserved prote 95.5 0.035 7.6E-07 52.4 6.5 83 57-139 27-121 (667)
298 cd03013 PRX5_like Peroxiredoxi 95.5 0.053 1.2E-06 42.2 6.6 55 71-125 28-88 (155)
299 COG1999 Uncharacterized protei 95.3 0.71 1.5E-05 37.8 12.8 105 57-161 51-205 (207)
300 PF02114 Phosducin: Phosducin; 95.2 0.13 2.9E-06 43.6 8.5 99 163-264 126-238 (265)
301 PRK12759 bifunctional gluaredo 95.2 0.063 1.4E-06 48.8 6.8 54 77-138 4-69 (410)
302 cd02959 ERp19 Endoplasmic reti 95.1 0.11 2.3E-06 38.4 6.8 72 171-243 10-89 (117)
303 cd03026 AhpF_NTD_C TRX-GRX-lik 95.0 0.3 6.6E-06 34.0 8.5 70 180-257 12-87 (89)
304 KOG1752 Glutaredoxin and relat 94.9 0.14 3E-06 36.8 6.6 65 66-138 7-76 (104)
305 PRK15412 thiol:disulfide inter 94.8 0.17 3.7E-06 40.6 7.7 42 218-262 133-174 (185)
306 KOG1731 FAD-dependent sulfhydr 94.3 0.048 1E-06 50.2 3.8 117 162-282 39-183 (606)
307 TIGR02738 TrbB type-F conjugat 94.3 0.2 4.3E-06 38.9 6.8 80 180-262 50-151 (153)
308 PF01323 DSBA: DSBA-like thior 94.3 0.62 1.3E-05 37.3 10.1 35 119-157 159-193 (193)
309 PF02630 SCO1-SenC: SCO1/SenC; 94.2 0.45 9.7E-06 37.8 8.7 57 58-114 37-97 (174)
310 cd02973 TRX_GRX_like Thioredox 94.0 0.33 7.2E-06 31.4 6.5 50 184-236 3-58 (67)
311 PHA02125 thioredoxin-like prot 93.7 0.34 7.5E-06 32.4 6.3 68 184-258 2-71 (75)
312 COG0386 BtuE Glutathione perox 93.6 1.1 2.4E-05 34.3 9.3 129 57-198 9-153 (162)
313 KOG0913 Thiol-disulfide isomer 93.4 0.017 3.6E-07 47.1 -0.7 101 164-272 26-134 (248)
314 COG1651 DsbG Protein-disulfide 93.4 0.95 2.1E-05 37.9 9.9 37 118-159 206-242 (244)
315 cd02966 TlpA_like_family TlpA- 92.7 0.56 1.2E-05 33.4 6.6 67 180-249 19-116 (116)
316 KOG1672 ATP binding protein [P 92.1 0.85 1.8E-05 36.3 7.1 77 162-241 66-148 (211)
317 TIGR02654 circ_KaiB circadian 92.1 0.86 1.9E-05 31.4 6.3 74 74-148 3-77 (87)
318 PF06053 DUF929: Domain of unk 92.0 1.1 2.5E-05 37.5 8.2 59 70-135 55-113 (249)
319 PRK09301 circadian clock prote 91.7 0.87 1.9E-05 32.4 6.2 75 73-148 5-80 (103)
320 PLN02919 haloacid dehalogenase 91.7 0.98 2.1E-05 46.3 9.1 81 180-263 420-535 (1057)
321 cd02978 KaiB_like KaiB-like fa 91.7 1.2 2.5E-05 29.6 6.4 60 76-135 3-63 (72)
322 cd02974 AhpF_NTD_N Alkyl hydro 91.6 3.1 6.7E-05 29.3 9.0 74 72-158 18-92 (94)
323 KOG0914 Thioredoxin-like prote 91.2 0.62 1.3E-05 37.8 5.6 75 167-241 129-216 (265)
324 cd03031 GRX_GRX_like Glutaredo 90.9 1 2.2E-05 34.6 6.4 53 77-137 2-68 (147)
325 PRK13728 conjugal transfer pro 90.2 1.2 2.6E-05 35.5 6.4 77 184-262 73-169 (181)
326 COG2143 Thioredoxin-related pr 90.1 5.1 0.00011 30.9 9.3 88 171-263 33-151 (182)
327 PF07449 HyaE: Hydrogenase-1 e 90.0 2.1 4.6E-05 30.8 7.0 74 163-240 10-92 (107)
328 cd03009 TryX_like_TryX_NRX Try 89.9 1.1 2.5E-05 33.3 6.0 59 180-241 18-110 (131)
329 TIGR00762 DegV EDD domain prot 89.6 1.6 3.4E-05 37.5 7.3 156 113-283 9-168 (275)
330 PF13905 Thioredoxin_8: Thiore 89.4 1.5 3.2E-05 30.5 6.0 23 216-241 71-93 (95)
331 cd02991 UAS_ETEA UAS family, E 89.0 2.2 4.8E-05 31.3 6.7 86 174-262 11-111 (116)
332 PF13728 TraF: F plasmid trans 88.7 4.1 8.8E-05 33.6 8.8 76 180-258 120-212 (215)
333 cd02960 AGR Anterior Gradient 88.0 2.4 5.1E-05 31.8 6.3 75 171-250 14-99 (130)
334 cd03012 TlpA_like_DipZ_like Tl 87.5 2.3 4.9E-05 31.5 6.2 20 180-199 23-42 (126)
335 TIGR02196 GlrX_YruB Glutaredox 87.4 4.9 0.00011 25.9 7.3 68 184-261 2-74 (74)
336 cd02967 mauD Methylamine utili 87.2 4.8 0.0001 28.9 7.6 19 180-198 21-39 (114)
337 PHA03075 glutaredoxin-like pro 87.1 1.1 2.3E-05 32.5 3.8 36 74-113 2-37 (123)
338 TIGR02742 TrbC_Ftype type-F co 86.7 1.9 4E-05 32.4 5.1 49 112-160 56-115 (130)
339 cd03040 GST_N_mPGES2 GST_N fam 86.5 3.5 7.6E-05 27.3 6.1 74 77-161 2-77 (77)
340 cd03060 GST_N_Omega_like GST_N 85.8 2.2 4.7E-05 27.9 4.7 52 78-133 2-54 (71)
341 TIGR02661 MauD methylamine deh 85.6 5.9 0.00013 31.8 8.0 43 215-262 134-177 (189)
342 PF13743 Thioredoxin_5: Thiore 85.1 0.65 1.4E-05 36.9 2.2 37 116-152 136-174 (176)
343 cd02977 ArsC_family Arsenate R 85.0 1.1 2.5E-05 32.1 3.2 33 78-116 2-34 (105)
344 PF13417 GST_N_3: Glutathione 84.3 9.5 0.00021 25.1 8.4 72 79-162 1-73 (75)
345 KOG1651 Glutathione peroxidase 83.6 4.1 8.8E-05 31.7 5.8 128 57-194 18-158 (171)
346 cd02964 TryX_like_family Trypa 83.2 7.7 0.00017 28.9 7.3 59 180-241 17-110 (132)
347 PF09673 TrbC_Ftype: Type-F co 82.9 4.8 0.00011 29.4 5.8 45 90-136 36-80 (113)
348 TIGR01617 arsC_related transcr 82.5 2.8 6.1E-05 30.7 4.5 34 78-117 2-35 (117)
349 COG2761 FrnE Predicted dithiol 82.4 3.2 7E-05 34.2 5.1 43 118-164 175-217 (225)
350 cd03008 TryX_like_RdCVF Trypar 82.4 5.8 0.00013 30.4 6.3 21 218-241 103-123 (146)
351 PF14595 Thioredoxin_9: Thiore 81.9 6.8 0.00015 29.4 6.4 62 180-241 41-108 (129)
352 COG3019 Predicted metal-bindin 81.2 21 0.00046 27.0 8.8 73 76-159 27-103 (149)
353 PF13192 Thioredoxin_3: Thiore 81.1 13 0.00029 24.6 7.3 66 188-261 6-76 (76)
354 cd03041 GST_N_2GST_N GST_N fam 80.8 4.9 0.00011 26.8 4.9 71 77-159 2-76 (77)
355 COG3531 Predicted protein-disu 80.5 3.6 7.8E-05 33.0 4.6 44 117-160 164-209 (212)
356 cd03036 ArsC_like Arsenate Red 79.9 2.9 6.3E-05 30.4 3.8 34 78-117 2-35 (111)
357 TIGR02739 TraF type-F conjugat 79.0 7.5 0.00016 32.9 6.4 79 180-261 150-245 (256)
358 PRK01655 spxA transcriptional 78.9 3.9 8.4E-05 30.7 4.3 35 77-117 2-36 (131)
359 KOG2507 Ubiquitin regulatory p 78.7 20 0.00043 32.4 9.0 90 71-160 16-111 (506)
360 COG1307 DegV Uncharacterized p 78.5 11 0.00023 32.6 7.3 158 112-284 10-172 (282)
361 TIGR02742 TrbC_Ftype type-F co 78.5 11 0.00024 28.3 6.5 49 211-262 55-113 (130)
362 cd03035 ArsC_Yffb Arsenate Red 77.9 2.2 4.9E-05 30.6 2.6 33 78-116 2-34 (105)
363 PF05768 DUF836: Glutaredoxin- 77.9 8.1 0.00018 26.1 5.3 74 184-261 2-81 (81)
364 cd03037 GST_N_GRX2 GST_N famil 77.8 3.6 7.7E-05 26.8 3.5 68 79-157 3-70 (71)
365 cd03051 GST_N_GTT2_like GST_N 77.8 5.4 0.00012 25.9 4.4 52 78-133 2-57 (74)
366 PF06953 ArsD: Arsenical resis 77.1 17 0.00037 27.0 7.1 66 92-160 23-102 (123)
367 TIGR01626 ytfJ_HI0045 conserve 77.0 21 0.00046 28.6 8.2 47 211-260 129-176 (184)
368 PF13899 Thioredoxin_7: Thiore 76.7 14 0.0003 24.9 6.2 66 171-239 8-82 (82)
369 PF07689 KaiB: KaiB domain; I 76.3 1.9 4E-05 29.5 1.7 51 82-132 5-56 (82)
370 KOG2603 Oligosaccharyltransfer 76.1 23 0.0005 30.7 8.4 110 152-265 26-167 (331)
371 PLN02399 phospholipid hydroper 75.5 19 0.00041 30.1 7.8 32 231-262 201-232 (236)
372 KOG2792 Putative cytochrome C 74.9 45 0.00097 28.2 9.5 105 57-162 123-277 (280)
373 PF02645 DegV: Uncharacterised 73.9 2.3 5E-05 36.6 2.1 155 114-285 11-172 (280)
374 cd00570 GST_N_family Glutathio 73.8 5.2 0.00011 25.2 3.4 52 78-133 2-55 (71)
375 PF00255 GSHPx: Glutathione pe 73.2 10 0.00022 27.4 5.0 44 71-115 19-63 (108)
376 cd02990 UAS_FAF1 UAS family, F 72.9 39 0.00084 25.6 11.9 89 71-160 19-133 (136)
377 PRK13703 conjugal pilus assemb 72.4 13 0.00029 31.3 6.2 78 181-261 144-238 (248)
378 PF04551 GcpE: GcpE protein; 72.1 5.1 0.00011 35.3 3.8 75 85-159 271-358 (359)
379 KOG3170 Conserved phosducin-li 71.9 40 0.00088 27.3 8.3 100 162-264 91-201 (240)
380 PF04592 SelP_N: Selenoprotein 71.2 7.8 0.00017 32.0 4.4 44 71-114 24-71 (238)
381 cd03032 ArsC_Spx Arsenate Redu 69.7 12 0.00025 27.3 4.8 34 77-116 2-35 (115)
382 COG0821 gcpE 1-hydroxy-2-methy 69.5 9.4 0.0002 33.3 4.7 76 85-160 264-351 (361)
383 cd03024 DsbA_FrnE DsbA family, 69.3 6.6 0.00014 31.5 3.8 37 116-156 164-200 (201)
384 cd03045 GST_N_Delta_Epsilon GS 69.0 11 0.00024 24.5 4.2 51 78-132 2-56 (74)
385 PTZ00056 glutathione peroxidas 68.7 33 0.00071 27.8 7.7 29 233-261 147-175 (199)
386 PF09822 ABC_transp_aux: ABC-t 68.7 73 0.0016 27.1 12.8 75 55-129 6-90 (271)
387 COG4545 Glutaredoxin-related p 68.7 12 0.00027 24.8 4.1 56 78-140 5-76 (85)
388 cd03074 PDI_b'_Calsequestrin_C 68.3 42 0.00091 24.2 10.5 87 73-159 20-119 (120)
389 PF08534 Redoxin: Redoxin; In 68.2 48 0.001 24.8 8.5 45 205-252 83-136 (146)
390 cd03059 GST_N_SspA GST_N famil 67.6 8.1 0.00017 25.1 3.3 69 78-158 2-71 (73)
391 PRK00366 ispG 4-hydroxy-3-meth 67.5 10 0.00022 33.5 4.6 75 85-159 271-356 (360)
392 KOG3171 Conserved phosducin-li 66.9 31 0.00067 28.2 6.8 101 163-266 139-253 (273)
393 PRK13730 conjugal transfer pil 65.1 14 0.00031 29.9 4.6 43 115-158 150-192 (212)
394 PRK12559 transcriptional regul 63.9 8.6 0.00019 28.9 3.1 34 77-116 2-35 (131)
395 cd03022 DsbA_HCCA_Iso DsbA fam 63.4 12 0.00026 29.7 4.1 35 117-156 157-191 (192)
396 cd03020 DsbA_DsbC_DsbG DsbA fa 63.2 46 0.001 26.7 7.6 37 216-260 161-197 (197)
397 PF09673 TrbC_Ftype: Type-F co 63.0 55 0.0012 23.8 7.2 26 211-239 55-80 (113)
398 cd03055 GST_N_Omega GST_N fami 61.0 22 0.00047 24.4 4.6 53 77-133 19-72 (89)
399 cd03025 DsbA_FrnE_like DsbA fa 60.5 13 0.00028 29.5 3.9 28 77-104 3-30 (193)
400 PF07172 GRP: Glycine rich pro 60.3 8.3 0.00018 27.2 2.3 9 1-9 1-9 (95)
401 PF04134 DUF393: Protein of un 59.5 14 0.00031 26.6 3.6 63 80-146 2-67 (114)
402 PF03190 Thioredox_DsbH: Prote 59.1 49 0.0011 25.9 6.6 86 153-241 9-113 (163)
403 PF08806 Sep15_SelM: Sep15/Sel 57.4 21 0.00045 24.1 3.8 34 127-160 41-76 (78)
404 KOG1422 Intracellular Cl- chan 57.3 66 0.0014 26.3 7.1 69 84-163 20-88 (221)
405 TIGR02180 GRX_euk Glutaredoxin 56.8 43 0.00092 22.1 5.5 49 184-235 1-59 (84)
406 PRK13344 spxA transcriptional 56.0 14 0.0003 27.8 3.1 34 77-116 2-35 (132)
407 cd03025 DsbA_FrnE_like DsbA fa 53.3 20 0.00044 28.4 3.9 22 117-138 159-180 (193)
408 PF06491 Disulph_isomer: Disul 52.8 96 0.0021 23.2 7.0 104 157-261 11-129 (136)
409 TIGR00612 ispG_gcpE 1-hydroxy- 51.4 13 0.00027 32.7 2.4 61 85-145 262-334 (346)
410 cd03015 PRX_Typ2cys Peroxiredo 50.8 84 0.0018 24.5 7.0 55 209-263 95-156 (173)
411 TIGR03137 AhpC peroxiredoxin. 49.9 80 0.0017 25.1 6.8 52 214-265 99-157 (187)
412 cd02974 AhpF_NTD_N Alkyl hydro 49.9 87 0.0019 21.9 7.7 71 180-261 19-91 (94)
413 PRK13730 conjugal transfer pil 49.3 84 0.0018 25.6 6.5 47 210-261 145-191 (212)
414 PF08806 Sep15_SelM: Sep15/Sel 49.2 18 0.00039 24.4 2.5 35 230-264 41-76 (78)
415 PRK13190 putative peroxiredoxi 48.4 89 0.0019 25.3 6.9 54 209-262 92-152 (202)
416 COG0450 AhpC Peroxiredoxin [Po 47.0 1.5E+02 0.0033 23.9 10.3 84 75-158 34-159 (194)
417 COG3634 AhpF Alkyl hydroperoxi 46.6 2.1E+02 0.0046 25.7 9.0 81 72-157 115-195 (520)
418 PRK10382 alkyl hydroperoxide r 46.1 1.5E+02 0.0033 23.7 7.9 55 210-264 95-156 (187)
419 cd03033 ArsC_15kD Arsenate Red 45.4 28 0.0006 25.4 3.2 32 77-114 2-33 (113)
420 PF13778 DUF4174: Domain of un 44.6 1.2E+02 0.0027 22.1 8.8 74 85-158 22-110 (118)
421 cd03017 PRX_BCP Peroxiredoxin 44.5 1.3E+02 0.0027 22.2 8.3 51 208-258 81-137 (140)
422 cd03030 GRX_SH3BGR Glutaredoxi 44.2 1.1E+02 0.0023 21.3 5.9 55 81-137 5-68 (92)
423 cd03052 GST_N_GDAP1 GST_N fami 43.2 91 0.002 20.3 5.2 55 78-138 2-60 (73)
424 cd02970 PRX_like2 Peroxiredoxi 42.4 78 0.0017 23.5 5.5 23 181-203 24-47 (149)
425 TIGR02200 GlrX_actino Glutared 42.2 92 0.002 20.0 7.2 53 184-240 2-60 (77)
426 cd03056 GST_N_4 GST_N family, 41.9 61 0.0013 20.6 4.3 52 78-133 2-57 (73)
427 PRK10877 protein disulfide iso 39.9 46 0.00099 27.7 4.0 41 215-263 190-230 (232)
428 PF13778 DUF4174: Domain of un 39.2 97 0.0021 22.7 5.3 44 218-263 68-111 (118)
429 cd02969 PRX_like1 Peroxiredoxi 36.5 2E+02 0.0043 22.2 10.0 34 205-241 87-120 (171)
430 KOG0852 Alkyl hydroperoxide re 36.1 90 0.0019 24.8 4.7 85 72-157 32-158 (196)
431 PHA02291 hypothetical protein 34.3 42 0.00091 23.9 2.4 24 1-24 1-24 (132)
432 COG1393 ArsC Arsenate reductas 32.0 58 0.0012 23.9 3.0 21 77-97 3-23 (117)
433 cd03061 GST_N_CLIC GST_N famil 31.3 1.8E+02 0.004 20.2 6.5 68 83-162 20-88 (91)
434 PF11337 DUF3139: Protein of u 30.3 60 0.0013 22.2 2.7 7 1-7 1-7 (85)
435 TIGR02540 gpx7 putative glutat 29.9 2.5E+02 0.0053 21.2 9.4 28 234-261 123-150 (153)
436 cd03034 ArsC_ArsC Arsenate Red 28.9 58 0.0013 23.5 2.6 33 78-116 2-34 (112)
437 KOG2501 Thioredoxin, nucleored 28.9 1.3E+02 0.0029 23.3 4.6 30 209-241 97-126 (157)
438 KOG3414 Component of the U4/U6 28.5 2.5E+02 0.0055 21.0 9.4 94 165-261 6-117 (142)
439 PF10281 Ish1: Putative stress 28.3 60 0.0013 18.2 2.1 22 250-271 3-24 (38)
440 cd03021 DsbA_GSTK DsbA family, 27.4 83 0.0018 25.5 3.6 38 118-156 170-208 (209)
441 PRK13617 psbV cytochrome c-550 27.4 33 0.00071 27.0 1.1 28 55-90 48-75 (170)
442 PRK15000 peroxidase; Provision 26.8 2.7E+02 0.0058 22.5 6.5 54 209-262 100-160 (200)
443 TIGR00014 arsC arsenate reduct 26.8 66 0.0014 23.3 2.6 33 78-116 2-34 (114)
444 KOG1364 Predicted ubiquitin re 26.6 85 0.0018 27.7 3.5 57 105-161 132-190 (356)
445 cd03053 GST_N_Phi GST_N family 25.8 1.7E+02 0.0037 18.7 4.4 69 77-157 2-74 (76)
446 TIGR03450 mycothiol_INO1 inosi 25.7 4.3E+02 0.0093 23.6 7.6 114 108-227 50-175 (351)
447 COG0278 Glutaredoxin-related p 24.3 2.7E+02 0.0059 19.9 6.0 68 65-137 7-79 (105)
448 PLN02412 probable glutathione 24.0 3.4E+02 0.0075 21.0 6.8 32 231-262 131-162 (167)
449 PF00578 AhpC-TSA: AhpC/TSA fa 23.6 2.7E+02 0.0059 19.7 6.3 34 208-241 83-119 (124)
450 PF11119 DUF2633: Protein of u 23.4 94 0.002 19.7 2.4 14 8-21 12-25 (59)
451 KOG0911 Glutaredoxin-related p 22.6 1.3E+02 0.0027 24.9 3.7 81 164-250 3-89 (227)
452 TIGR01616 nitro_assoc nitrogen 22.2 1.2E+02 0.0027 22.5 3.3 22 76-97 2-23 (126)
453 COG3411 Ferredoxin [Energy pro 22.1 2.1E+02 0.0045 18.5 3.8 30 128-161 17-46 (64)
454 COG1930 CbiN ABC-type cobalt t 22.1 99 0.0021 21.5 2.5 37 72-111 48-84 (97)
455 PRK15396 murein lipoprotein; P 21.9 1E+02 0.0022 20.8 2.5 15 1-15 1-15 (78)
456 TIGR02652 conserved hypothetic 21.7 33 0.00072 25.8 0.2 70 84-178 11-84 (163)
457 PF09654 DUF2396: Protein of u 21.7 32 0.0007 25.8 0.1 70 84-178 8-81 (161)
458 PF09494 Slx4: Slx4 endonuclea 21.5 78 0.0017 20.3 1.9 34 250-283 24-57 (64)
459 TIGR01165 cbiN cobalt transpor 21.2 1E+02 0.0023 21.4 2.5 28 73-103 51-78 (91)
460 KOG2244 Highly conserved prote 21.0 1E+02 0.0023 29.1 3.2 77 59-135 98-185 (786)
461 PRK10026 arsenate reductase; P 20.9 1.2E+02 0.0027 23.1 3.1 32 77-114 4-35 (141)
462 PRK10853 putative reductase; P 20.9 1.1E+02 0.0024 22.4 2.8 33 77-115 2-34 (118)
463 PF11317 DUF3119: Protein of u 20.9 1.9E+02 0.0041 21.2 3.9 35 126-160 81-115 (116)
464 PF06491 Disulph_isomer: Disul 20.3 3.8E+02 0.0083 20.1 10.9 101 57-159 17-131 (136)
465 cd03058 GST_N_Tau GST_N family 20.2 1.9E+02 0.004 18.5 3.7 69 78-158 2-72 (74)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-37 Score=271.14 Aligned_cols=230 Identities=32% Similarity=0.522 Sum_probs=212.8
Q ss_pred CCCcEEcChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC---CcEEEEEeCcccHHHHHhCCCccccEE
Q 021976 55 AKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTL 131 (304)
Q Consensus 55 ~~~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 131 (304)
+..|..++.++|+..+..+..+||.||||||+||++++|+++++|..++. .+..++|||+++.++|.+|+|++|||+
T Consensus 24 ~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTl 103 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTL 103 (493)
T ss_pred ccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeE
Confidence 46899999999999999999999999999999999999999999999987 789999999999999999999999999
Q ss_pred EEEeCCeEEEEeeCCCCHHHHHHHHHHHhCCCceecCCHHHHHHhhccCCeEEEEEecCCCCccHHHHHHHhccCCceeE
Q 021976 132 YLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNF 211 (304)
Q Consensus 132 ~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~a~~~~~~~f 211 (304)
.+|++|.....|.|+++++.|..|+++..+|.+..+.+.++...++.+.+..+++||....+.....+..++.+++++.|
T Consensus 104 kiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~~~~~~~a~~l~~d~~F 183 (493)
T KOG0190|consen 104 KIFRNGRSAQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLAESFFDAASKLRDDYKF 183 (493)
T ss_pred EEEecCCcceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccchHHHHHHHHhcccccee
Confidence 99999966799999999999999999999999999999999999999999999999998888774555555689999999
Q ss_pred EEecCHHHHhhcCCCCCCCCCeEEEEecCCCceecccCCCCHHHHHHHHhcCCCCcEEeeCccchhhhhcCCCC
Q 021976 212 YQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRK 285 (304)
Q Consensus 212 ~~~~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~~~~l~~~~~~~~~~~~~~ 285 (304)
+++++.++++.+++.... .+-+++++..+.....|+|+++.+.|.+||..+++|++.++|.++...++++.++
T Consensus 184 ~~ts~~~~~~~~~~~~~~-~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~ 256 (493)
T KOG0190|consen 184 AHTSDSDVAKKLELNTEG-TFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVK 256 (493)
T ss_pred eccCcHhHHhhccCCCCC-cceEEeccccccchhhcccccCHHHHHHHHHHhcccccceecccccceeeccccc
Confidence 999999999999987311 3448889999888999999999999999999999999999999999999999777
No 2
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=100.00 E-value=3.3e-32 Score=222.05 Aligned_cols=224 Identities=21% Similarity=0.352 Sum_probs=192.4
Q ss_pred cChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-----CcEEEEEeCcccHHHHHhCCCccccEEEEEe
Q 021976 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-----EADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (304)
Q Consensus 61 l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-----~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 135 (304)
++.+|++.+++.++.++|+|||+||+.++.++|.|+++|..++. ++..+.|||+.+..++.+|.|..|||+.+|+
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 35678899999999999999999999999999999999988765 7999999999999999999999999999999
Q ss_pred CCeEEE-EeeCCCCHHHHHHHHHHHhCCCceecCCHHHHHHhhccCCeEEEEEecCCCCccHHHHHHHh-ccCCceeEEE
Q 021976 136 AGVRQF-QFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQ 213 (304)
Q Consensus 136 ~g~~~~-~~~g~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f~~ 213 (304)
+|.... .|+|.++.+.+.+|+++.+..++.+..+.++++......+..+|+||....++.++.+..+| -++.++.|.+
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~~kva~~lr~dc~f~V 160 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNLRKVASLLRDDCVFLV 160 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchHHHHHHHHHHHhhccEEEe
Confidence 997665 89999999999999999999999999999999999887888999999999999999999988 6899999887
Q ss_pred ecCHHHHhhcCCCCCCCCCeEEEEecCCC-ceecccCCC-CHHHHHHHHhcCCCCcEEeeCccchhhhhcCCCC-eeee
Q 021976 214 TTSADVAEFFHIHPKSKRPALIFLHLEAG-KATPFRHQF-TRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRK-QVIE 289 (304)
Q Consensus 214 ~~~~~l~~~~~i~~~~~~P~lv~~~~~~~-~~~~y~g~~-~~~~i~~fi~~~~~p~~~~l~~~~~~~~~~~~~~-~~~~ 289 (304)
.........-. . +.+ +++|+++.. ....|.|+. +.+.+..||.+.+.|+|+++|.+|..++.+++.| .+|+
T Consensus 161 ~~gD~~~~~~~-~---~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EELtEEGlPflILf 234 (375)
T KOG0912|consen 161 GFGDLLKPHEP-P---GKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREITFENAEELTEEGLPFLILF 234 (375)
T ss_pred eccccccCCCC-C---CCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhhhccHHHHhhcCCceEEEE
Confidence 65432222211 1 122 555665543 334799987 5699999999999999999999999999999988 5544
No 3
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.98 E-value=3.2e-30 Score=237.47 Aligned_cols=224 Identities=27% Similarity=0.439 Sum_probs=197.2
Q ss_pred CcEEcChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC---CcEEEEEeCcccHHHHHhCCCccccEEEE
Q 021976 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLYL 133 (304)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 133 (304)
.|..+++++|+++++++++++|.|||+||++|+++.|.|.++++.+++ ++.++.|||++++++|+++||.++||+++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 578899999999999999999999999999999999999999998875 49999999999999999999999999999
Q ss_pred EeCCeE-EEEeeCCCCHHHHHHHHHHHhCCCceecCCHHHHHHhhccCCeEEEEEecCCCCccHHHHHHHh-ccCCcee-
Q 021976 134 FVAGVR-QFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVN- 210 (304)
Q Consensus 134 ~~~g~~-~~~~~g~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~- 210 (304)
|++|+. +..|.|.++.+.+.+|+.+.+++++..+++.++++.++...+..+|+|+....++....+.++| .+...+.
T Consensus 82 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~a~~~~~~~~~ 161 (462)
T TIGR01130 82 FRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAEKLRDVYFF 161 (462)
T ss_pred EeCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHHHHhhhccce
Confidence 998876 7899999999999999999999999999999999999999888999999877778888898888 5656665
Q ss_pred EEEecCHHHHhhcCCCCCCCCCeEEEEecCCCce--ecccCCC--CHHHHHHHHhcCCCCcEEeeCccchhhhhcCCCC
Q 021976 211 FYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKA--TPFRHQF--TRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRK 285 (304)
Q Consensus 211 f~~~~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~--~~y~g~~--~~~~i~~fi~~~~~p~~~~l~~~~~~~~~~~~~~ 285 (304)
++.+.+..+.+.++.. .+.+++++..+... ..|+|+. +.++|.+||..+++|++++++.+++..+++++ +
T Consensus 162 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~ 235 (462)
T TIGR01130 162 FAHSSDVAAFAKLGAF----PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESG-P 235 (462)
T ss_pred EEecCCHHHHhhcCCC----CCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCC-C
Confidence 5566777888998876 47777777654333 4677765 56899999999999999999999999999876 5
No 4
>PTZ00102 disulphide isomerase; Provisional
Probab=99.98 E-value=8e-30 Score=235.65 Aligned_cols=216 Identities=26% Similarity=0.425 Sum_probs=188.0
Q ss_pred CCcEEcChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC---CcEEEEEeCcccHHHHHhCCCccccEEE
Q 021976 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLY 132 (304)
Q Consensus 56 ~~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 132 (304)
..+..++.++|+..+.+++.++|.|||+||++|+++.|.|.++++.+.+ ++.++.|||+++.++|++|+|.++||++
T Consensus 32 ~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~ 111 (477)
T PTZ00102 32 EHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIK 111 (477)
T ss_pred CCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEE
Confidence 4789999999999998899999999999999999999999999988764 6999999999999999999999999999
Q ss_pred EEeCCeEEEEeeCCCCHHHHHHHHHHHhCCCceecCCHHHHHHhhccCCeEEEEEecCCCCccHHHHHHHh-ccCCceeE
Q 021976 133 LFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNF 211 (304)
Q Consensus 133 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f 211 (304)
+|++|+.+ .|.|.++.+.|.+|+.+.+++++..+++.+++..+.+.....+++++....+...+.+.++| ..+....|
T Consensus 112 ~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~F 190 (477)
T PTZ00102 112 FFNKGNPV-NYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKHREHAKF 190 (477)
T ss_pred EEECCceE-EecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhccccceE
Confidence 99988665 99999999999999999999999999999888887777777888888777778888888888 57777888
Q ss_pred EEecCHHHHhhcCCCCCCCCCeEEEEecCCCceecccCCCCHHHHHHHHhcCCCCcEEeeCccchhhhhcCCCC
Q 021976 212 YQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRK 285 (304)
Q Consensus 212 ~~~~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~~~~l~~~~~~~~~~~~~~ 285 (304)
+...+. . .+.+++++..+.....|.| .+.++|.+||..+++|++.+++.+++..++.++.+
T Consensus 191 ~~~~~~--------~----~~~~~~~~~~~~~~~~~~~-~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~ 251 (477)
T PTZ00102 191 FVKKHE--------G----KNKIYVLHKDEEGVELFMG-KTKEELEEFVSTESFPLFAEINAENYRRYISSGKD 251 (477)
T ss_pred EEEcCC--------C----CCcEEEEecCCCCcccCCC-CCHHHHHHHHHHcCCCceeecCccchHHHhcCCcc
Confidence 765432 2 4678888876644444555 58899999999999999999999999999887755
No 5
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.95 E-value=7e-28 Score=196.66 Aligned_cols=207 Identities=19% Similarity=0.218 Sum_probs=165.3
Q ss_pred cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC---CcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEEEEeeCCC
Q 021976 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGER 147 (304)
Q Consensus 71 ~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~ 147 (304)
+++..|+|.||||||+||+++.|.|.++.-++++ .+.+++.||+..+.++.++||+||||+.+|++| ....|+|++
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd-~a~dYRG~R 119 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGD-HAIDYRGGR 119 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCC-eeeecCCCc
Confidence 3567899999999999999999999999999887 789999999999999999999999999999988 889999999
Q ss_pred CHHHHHHHHHHHhCCCceecCCHHHHHHhhcc-CCeEEEEEecCCCCccHHHHHHHhccCCceeEEEecCHHHHhhcCCC
Q 021976 148 TRDVISAWVREKMTLGTYSITTTDEAERILTV-ESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIH 226 (304)
Q Consensus 148 ~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~-~~~~~v~f~~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~l~~~~~i~ 226 (304)
+.+.|.+|..+..++-+..+.........++. +.+.+ .|+.+..+|....|..+|+-.-.+....+.+++++-.++--
T Consensus 120 ~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ff-Vf~Gtge~PL~d~fidAASe~~~~a~FfSaseeVaPe~~~~ 198 (468)
T KOG4277|consen 120 EKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFF-VFFGTGEGPLFDAFIDAASEKFSVARFFSASEEVAPEENDA 198 (468)
T ss_pred cHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceE-EEEeCCCCcHHHHHHHHhhhheeeeeeeccccccCCcccch
Confidence 99999999999998877777553333344444 55555 57788889999999998854444444445555565555432
Q ss_pred CCCCCCeEEEEecCCCceecccCCCCHHHHHHHHhcCCCCcEEeeCccchhhhhcCCC
Q 021976 227 PKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPR 284 (304)
Q Consensus 227 ~~~~~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~~~~l~~~~~~~~~~~~~ 284 (304)
. ..|.+.+|+++ .+..+. +.+.++|.+||+..++|-+-..+..++.++-.++.
T Consensus 199 k--empaV~VFKDe--tf~i~d-e~dd~dLseWinRERf~~fLa~dgflL~EiG~sGK 251 (468)
T KOG4277|consen 199 K--EMPAVAVFKDE--TFEIED-EGDDEDLSEWINRERFPGFLAADGFLLAEIGASGK 251 (468)
T ss_pred h--hccceEEEccc--eeEEEe-cCchhHHHHHHhHhhccchhhcccchHHHhCcCCc
Confidence 2 47999999876 344433 34678999999999999998888888777766553
No 6
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.93 E-value=1.4e-25 Score=164.63 Aligned_cols=102 Identities=17% Similarity=0.311 Sum_probs=95.3
Q ss_pred CCCcEEcChhcHHHH---hcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHH-HhCCCccccE
Q 021976 55 AKDVVSLNGKNFSEF---MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA-KEYNILAYPT 130 (304)
Q Consensus 55 ~~~v~~l~~~~~~~~---~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~-~~~~v~~~Pt 130 (304)
.+.|+++++++|++. +.++++++|.|||+||++|+.+.|.|+++++++++.+.|++|||+++.++| ++|+|.++||
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PT 87 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPV 87 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCE
Confidence 468999999999986 578899999999999999999999999999999878999999999999999 5899999999
Q ss_pred EEEEeCCeEEEEeeCCCCHHHHHHHH
Q 021976 131 LYLFVAGVRQFQFFGERTRDVISAWV 156 (304)
Q Consensus 131 ~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (304)
+.+|++|+...+|.|.++.+.|..|+
T Consensus 88 l~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 88 IHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred EEEEECCccceEEeCCCCHHHHHhhC
Confidence 99999998889999999999998873
No 7
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.93 E-value=1.3e-23 Score=175.44 Aligned_cols=225 Identities=18% Similarity=0.278 Sum_probs=177.3
Q ss_pred CCCcEEcChhcHHHHhcCCCcEEEEEEcCCChhhhhhH------H-HHHHHHHHhhC-CcEEEEEeCcccHHHHHhCCCc
Q 021976 55 AKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLA------P-EFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNIL 126 (304)
Q Consensus 55 ~~~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~------~-~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~ 126 (304)
...|++|+.+||.+++++.+...|+||.+--. -+... . .++-.|+-+.. ++.|+.||..++..+++++|+.
T Consensus 33 kDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~-dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~ 111 (383)
T PF01216_consen 33 KDRVIDLNEKNFKRALKKYDVLVLYYHEPVES-DKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVE 111 (383)
T ss_dssp S--CEEE-TTTHHHHHHH-SEEEEEEE--STS-SHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--
T ss_pred ccceEEcchhHHHHHHHhhcEEEEEEecCCcc-CHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcc
Confidence 46899999999999999999999999988632 22221 2 23344555544 8999999999999999999999
Q ss_pred cccEEEEEeCCeEEEEeeCCCCHHHHHHHHHHHhCCCceecCCHHHHHHhhc-cCCeEEEEEecCCCCccHHHHHHHh-c
Q 021976 127 AYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILT-VESKLVLGFLHDLEGMESEELAAAS-K 204 (304)
Q Consensus 127 ~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~-~~~~~~v~f~~~~~~~~~~~~~~~a-~ 204 (304)
..+++++|++| .+..|.|.++++.+..||...+..++..|++..+++.+.+ .+.+.+|+||.+..+..++.|..+| .
T Consensus 112 E~~SiyVfkd~-~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~yk~FeeAAe~ 190 (383)
T PF01216_consen 112 EEGSIYVFKDG-EVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEHYKEFEEAAEH 190 (383)
T ss_dssp STTEEEEEETT-EEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHHHHHHHHHHHH
T ss_pred ccCcEEEEECC-cEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcHHHHHHHHHHHh
Confidence 99999999999 7889999999999999999999999999999999988887 4579999999998899999999999 7
Q ss_pred cCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCCCceecccCC-CCHHHHHHHHhcCCCCcEEeeCccchhhhhcCC
Q 021976 205 LHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQ-FTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDP 283 (304)
Q Consensus 205 ~~~~~~f~~~~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~-~~~~~i~~fi~~~~~p~~~~l~~~~~~~~~~~~ 283 (304)
++.-+.|+++.++.++++++++ ...+-+|++....+....|+ .+.++|.+||++|+.|.+++++.+++.++.+..
T Consensus 191 F~p~IkFfAtfd~~vAk~L~lK----~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rptlrkl~~~~m~e~Wedd 266 (383)
T PF01216_consen 191 FQPYIKFFATFDKKVAKKLGLK----LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPTLRKLRPEDMFETWEDD 266 (383)
T ss_dssp CTTTSEEEEE-SHHHHHHHT-S----TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-SEEE--GGGHHHHHHSS
T ss_pred hcCceeEEEEecchhhhhcCcc----ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhHhhhCChhhhhhhhccc
Confidence 9999999999999999999997 68899999998899999874 688999999999999999999999999999988
Q ss_pred CC
Q 021976 284 RK 285 (304)
Q Consensus 284 ~~ 285 (304)
+.
T Consensus 267 ~~ 268 (383)
T PF01216_consen 267 ID 268 (383)
T ss_dssp SS
T ss_pred CC
Confidence 77
No 8
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.92 E-value=7.7e-25 Score=159.22 Aligned_cols=100 Identities=23% Similarity=0.519 Sum_probs=94.7
Q ss_pred CcEEcChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeC
Q 021976 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136 (304)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 136 (304)
.++.++.++|++.+.++++++|.|||+||++|+++.|.|+++++++++.+.|++|||++++.+|++++|+++||+++|++
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 81 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPS 81 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcC
Confidence 57889999999999888999999999999999999999999999998889999999999999999999999999999999
Q ss_pred CeEEEEeeCCCCHHHHHHHH
Q 021976 137 GVRQFQFFGERTRDVISAWV 156 (304)
Q Consensus 137 g~~~~~~~g~~~~~~l~~~i 156 (304)
|+.+.+|.|.++.+.|.+|.
T Consensus 82 g~~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 82 GMNPEKYYGDRSKESLVKFA 101 (101)
T ss_pred CCCcccCCCCCCHHHHHhhC
Confidence 98889999999999998873
No 9
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.9e-24 Score=159.55 Aligned_cols=106 Identities=24% Similarity=0.395 Sum_probs=98.6
Q ss_pred CCcEEcChhcHHHHh-cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEE
Q 021976 56 KDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (304)
Q Consensus 56 ~~v~~l~~~~~~~~~-~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 134 (304)
..+..++..+|++.+ +.+.||+|+|||+||+||+.+.|.+++++.++.+.+.+++||.+++.+++.+|+|.++||+++|
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence 355667889998555 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEeeCCCCHHHHHHHHHHHhC
Q 021976 135 VAGVRQFQFFGERTRDVISAWVREKMT 161 (304)
Q Consensus 135 ~~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (304)
++|+...++.|..+.+.+.++|++.+.
T Consensus 123 knGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 123 KNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred ECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 999999999999999999999998763
No 10
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.91 E-value=2.3e-23 Score=152.02 Aligned_cols=102 Identities=28% Similarity=0.566 Sum_probs=97.6
Q ss_pred cEEcChhcHHHHhcC-CCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeC
Q 021976 58 VVSLNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136 (304)
Q Consensus 58 v~~l~~~~~~~~~~~-~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 136 (304)
|..+++++|++.+.+ +++++|.||++||++|+.+.|.|+++++.+++++.++.||+++++.+|++|+|.++||+++|++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 80 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKN 80 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEET
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEEC
Confidence 567899999999976 8999999999999999999999999999999899999999999999999999999999999999
Q ss_pred CeEEEEeeCCCCHHHHHHHHHHH
Q 021976 137 GVRQFQFFGERTRDVISAWVREK 159 (304)
Q Consensus 137 g~~~~~~~g~~~~~~l~~~i~~~ 159 (304)
|+...+|.|.++.+.|.+||+++
T Consensus 81 g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 81 GKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp TEEEEEEESSSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHcC
Confidence 99999999999999999999875
No 11
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4e-23 Score=185.01 Aligned_cols=201 Identities=22% Similarity=0.373 Sum_probs=161.9
Q ss_pred hhcH-HHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEEE
Q 021976 63 GKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQF 141 (304)
Q Consensus 63 ~~~~-~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 141 (304)
..++ ...+..+++++|.||+|||++|+++.|.|.++++.+++.+.++.|||+++.++|++|+|+++||+.+|..|..+.
T Consensus 36 ~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~ 115 (383)
T KOG0191|consen 36 LDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPI 115 (383)
T ss_pred ccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCcee
Confidence 3444 455578899999999999999999999999999999988999999999999999999999999999999887789
Q ss_pred EeeCCCCHHHHHHHHHHHhCCCce--------ecCCHHHHHH-hhccCCeEEEEEecCCCCc---cHHHHHHHh-cc--C
Q 021976 142 QFFGERTRDVISAWVREKMTLGTY--------SITTTDEAER-ILTVESKLVLGFLHDLEGM---ESEELAAAS-KL--H 206 (304)
Q Consensus 142 ~~~g~~~~~~l~~~i~~~~~~~~~--------~l~~~~~~~~-~~~~~~~~~v~f~~~~~~~---~~~~~~~~a-~~--~ 206 (304)
.|.|..+.+.+..|+.+.+.+.+. .+.. +++.. ..+.+..++|.||.|||.. ....+..++ .+ .
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~ 194 (383)
T KOG0191|consen 116 DYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTK-DNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSK 194 (383)
T ss_pred eccCcccHHHHHHHHHHhhccccccccCCceEEccc-cchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccC
Confidence 999999999999999988765433 3322 23333 3345778999999999984 223344444 22 3
Q ss_pred CceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecCCCceecccCCCCHHHHHHHHhcCCCCc
Q 021976 207 SDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPL 267 (304)
Q Consensus 207 ~~~~f~~~---~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~ 267 (304)
..+.++.. ....++..+++.. +|++.+|++++.....|.|.++.+.|..|+.+...+.
T Consensus 195 ~~v~~~~~d~~~~~~~~~~~~v~~---~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 195 ENVELGKIDATVHKSLASRLEVRG---YPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred cceEEEeeccchHHHHhhhhcccC---CceEEEecCCCcccccccccccHHHHHHHHHhhcCCC
Confidence 55666644 4789999999997 9999999988753667778899999999999876663
No 12
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.91 E-value=1.2e-23 Score=153.77 Aligned_cols=100 Identities=31% Similarity=0.544 Sum_probs=92.6
Q ss_pred CcEEcChhcHHHHh-cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEe
Q 021976 57 DVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (304)
Q Consensus 57 ~v~~l~~~~~~~~~-~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 135 (304)
.+.+++.++|++.+ +++++++|.|||+||++|+++.|.|+++++++++.+.++.|||++++++|++++|.++||+++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 81 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYP 81 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEc
Confidence 57789999999877 55789999999999999999999999999999878999999999999999999999999999999
Q ss_pred CC-eEEEEeeCCCC-HHHHHHHH
Q 021976 136 AG-VRQFQFFGERT-RDVISAWV 156 (304)
Q Consensus 136 ~g-~~~~~~~g~~~-~~~l~~~i 156 (304)
+| +.+.+|.|..+ .++|.+|+
T Consensus 82 ~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 82 GNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CCCCCceEccCCCCCHHHHHhhC
Confidence 77 88999999987 99998875
No 13
>PRK10996 thioredoxin 2; Provisional
Probab=99.90 E-value=8.8e-23 Score=156.49 Aligned_cols=132 Identities=22% Similarity=0.412 Sum_probs=118.4
Q ss_pred cccccccCchhhhcccCCCCCCCCCccCCCcEEcChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcE
Q 021976 28 SHEDLKAEPDELELTNLNNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD 107 (304)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~ 107 (304)
+|...+..|......+..|+.+....-+..+++++.++|++.++++++++|+|||+||++|+++.|.+.++++++.+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~ 86 (139)
T PRK10996 7 SCQAINRLPDERIEDAAKCGRCGHDLFDGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVR 86 (139)
T ss_pred CCCCcCCCCCccccCCCcCCCCCCccCCCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeE
Confidence 34445667777777777888776666677889999999999998899999999999999999999999999999988899
Q ss_pred EEEEeCcccHHHHHhCCCccccEEEEEeCCeEEEEeeCCCCHHHHHHHHHHH
Q 021976 108 LVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159 (304)
Q Consensus 108 ~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (304)
++++|++++++++++|+|.++||+++|++|+.+.++.|..+.+.+.+|+.+.
T Consensus 87 ~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 87 FVKVNTEAERELSARFRIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEEEeCCCCHHHHHhcCCCccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999875
No 14
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.90 E-value=2.4e-23 Score=153.26 Aligned_cols=100 Identities=35% Similarity=0.621 Sum_probs=92.2
Q ss_pred CcEEcChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC------CcEEEEEeCcccHHHHHhCCCccccE
Q 021976 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG------EADLVMVDAYLEKDLAKEYNILAYPT 130 (304)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~------~~~~~~vd~~~~~~~~~~~~v~~~Pt 130 (304)
.+.++++++|++.+.++++++|.|||+||++|+++.|.|+++++.+++ .+.++.|||++++++|++|||+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt 81 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence 578899999999998889999999999999999999999999988642 48999999999999999999999999
Q ss_pred EEEEeCCe-EEEEeeCCCCHHHHHHHH
Q 021976 131 LYLFVAGV-RQFQFFGERTRDVISAWV 156 (304)
Q Consensus 131 ~~~~~~g~-~~~~~~g~~~~~~l~~~i 156 (304)
+++|++|+ ....|.|.++.++|.+||
T Consensus 82 l~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 82 LKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 99999997 458899999999999885
No 15
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.90 E-value=7.5e-23 Score=151.04 Aligned_cols=105 Identities=15% Similarity=0.192 Sum_probs=94.7
Q ss_pred CCCcEEcChhcHHHHh-cCCCcEEEEEEcCCChh--hh--hhHHHHHHHHHHh--hCCcEEEEEeCcccHHHHHhCCCcc
Q 021976 55 AKDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYW--SK--KLAPEFAAAAKML--KGEADLVMVDAYLEKDLAKEYNILA 127 (304)
Q Consensus 55 ~~~v~~l~~~~~~~~~-~~~~~~lv~f~a~wC~~--C~--~~~~~~~~~~~~~--~~~~~~~~vd~~~~~~~~~~~~v~~ 127 (304)
...|..+|+++|++.+ +.+.++++.||++||+| |+ ...|.+.+++.++ ++++.+++||++++++++++|||.+
T Consensus 8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~ 87 (120)
T cd03065 8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE 87 (120)
T ss_pred CcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc
Confidence 4588999999999888 44568899999999977 99 8899999999988 6689999999999999999999999
Q ss_pred ccEEEEEeCCeEEEEeeCCCCHHHHHHHHHHHh
Q 021976 128 YPTLYLFVAGVRQFQFFGERTRDVISAWVREKM 160 (304)
Q Consensus 128 ~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (304)
+||+++|++|+.+. |.|.++.+.|.+||.+..
T Consensus 88 iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 88 EDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 99999999998665 999999999999998764
No 16
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.89 E-value=1.3e-21 Score=161.36 Aligned_cols=190 Identities=12% Similarity=0.175 Sum_probs=141.3
Q ss_pred hcHHHHhcCCCcEEEEEEc---CCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeE
Q 021976 64 KNFSEFMGKNRNVMVMFYA---NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR 139 (304)
Q Consensus 64 ~~~~~~~~~~~~~lv~f~a---~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 139 (304)
+.|.+.+. +...++.|++ +||++|+.+.|.++++++++++ .+.++.+|.+++++++++|+|.++||+++|++|+.
T Consensus 11 ~~~~~~~~-~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 11 ELFLKELK-NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKD 89 (215)
T ss_pred HHHHHhcC-CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCee
Confidence 33344443 4455767888 9999999999999999999964 45677777779999999999999999999999987
Q ss_pred E-EEeeCCCCHHHHHHHHHHHhCC--CceecCCHHHHHHhhccCC-eEEEEEecCCCCccHH---HHHHHhccCCceeEE
Q 021976 140 Q-FQFFGERTRDVISAWVREKMTL--GTYSITTTDEAERILTVES-KLVLGFLHDLEGMESE---ELAAASKLHSDVNFY 212 (304)
Q Consensus 140 ~-~~~~g~~~~~~l~~~i~~~~~~--~~~~l~~~~~~~~~~~~~~-~~~v~f~~~~~~~~~~---~~~~~a~~~~~~~f~ 212 (304)
. .++.|..+.+++.+|++..++. ....+ +.+..+.+.+.++ ..++.|+.+||+++.. .+..++...+++.+.
T Consensus 90 ~~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L-~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~ 168 (215)
T TIGR02187 90 GGIRYTGIPAGYEFAALIEDIVRVSQGEPGL-SEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGE 168 (215)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEE
Confidence 6 4899999999999999888532 22233 4444444444344 4555589999987543 333344334556554
Q ss_pred ---EecCHHHHhhcCCCCCCCCCeEEEEecCCCceecccCCCCHHHHHHHHhc
Q 021976 213 ---QTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTH 262 (304)
Q Consensus 213 ---~~~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi~~ 262 (304)
...+++++++|++.+ .|++++++.+ . .+.|..+.+.+.+|+.+
T Consensus 169 ~vD~~~~~~~~~~~~V~~---vPtl~i~~~~--~--~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 169 MIEANENPDLAEKYGVMS---VPKIVINKGV--E--EFVGAYPEEQFLEYILS 214 (215)
T ss_pred EEeCCCCHHHHHHhCCcc---CCEEEEecCC--E--EEECCCCHHHHHHHHHh
Confidence 347889999999997 9999998654 2 28888889999999875
No 17
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.89 E-value=3e-22 Score=163.82 Aligned_cols=106 Identities=34% Similarity=0.546 Sum_probs=97.4
Q ss_pred CCcEEcChhcHHHHhcC-----CCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccE
Q 021976 56 KDVVSLNGKNFSEFMGK-----NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPT 130 (304)
Q Consensus 56 ~~v~~l~~~~~~~~~~~-----~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 130 (304)
..++++++++|++.+.. +++++|+|||+||++|+++.|.|+++++++++.+.++.+||+++++++++|+|+++||
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PT 109 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPT 109 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCE
Confidence 57899999999998742 4799999999999999999999999999999889999999999999999999999999
Q ss_pred EEEEeCCeEEEEeeCCCCHHHHHHHHHHHhC
Q 021976 131 LYLFVAGVRQFQFFGERTRDVISAWVREKMT 161 (304)
Q Consensus 131 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (304)
+++|++|+.+..+.|.++.+++.+|+.+...
T Consensus 110 l~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 110 LLLFDKGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred EEEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 9999999777667788999999999988763
No 18
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.89 E-value=1.3e-22 Score=147.42 Aligned_cols=99 Identities=27% Similarity=0.498 Sum_probs=90.5
Q ss_pred CcEEcChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcccHHHHHhCCCccccEEEEEe
Q 021976 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (304)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 135 (304)
.|+++++++|++.+++ + ++|+|||+||++|+++.|.|+++++.+++ ++.++.+||++++.++++|+|.++||+++|+
T Consensus 2 ~v~~l~~~~f~~~~~~-~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02994 2 NVVELTDSNWTLVLEG-E-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAK 79 (101)
T ss_pred ceEEcChhhHHHHhCC-C-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeC
Confidence 5788999999998843 3 89999999999999999999999998865 7999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCHHHHHHHHHH
Q 021976 136 AGVRQFQFFGERTRDVISAWVRE 158 (304)
Q Consensus 136 ~g~~~~~~~g~~~~~~l~~~i~~ 158 (304)
+|+ +.+|.|.++.++|.+|+++
T Consensus 80 ~g~-~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 80 DGV-FRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred CCC-EEEecCCCCHHHHHHHHhC
Confidence 996 5889999999999999863
No 19
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.88 E-value=3.6e-22 Score=145.44 Aligned_cols=99 Identities=31% Similarity=0.614 Sum_probs=91.5
Q ss_pred CcEEcChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC---CcEEEEEeCcccHHHHHhCCCccccEEEE
Q 021976 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLYL 133 (304)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 133 (304)
+++.+++++|++.+.++ .++|+|||+||++|+++.|.++++++++++ .+.++.+||+++..+|++|+|.++||+++
T Consensus 1 ~~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 1 GVLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred CeeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 36789999999999665 599999999999999999999999999986 69999999999999999999999999999
Q ss_pred EeCCeEEEEeeCCCCHHHHHHHH
Q 021976 134 FVAGVRQFQFFGERTRDVISAWV 156 (304)
Q Consensus 134 ~~~g~~~~~~~g~~~~~~l~~~i 156 (304)
|++|+.+.+|.|..+.++|.+||
T Consensus 80 ~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCCeeeEeeCCCCHHHHHhhC
Confidence 99998888999999999998875
No 20
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3e-22 Score=165.14 Aligned_cols=107 Identities=23% Similarity=0.423 Sum_probs=101.1
Q ss_pred CCcEEcChhcHHHHh---cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEE
Q 021976 56 KDVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY 132 (304)
Q Consensus 56 ~~v~~l~~~~~~~~~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 132 (304)
..|.++|+.||++.+ ...+||+|+||||||++|+++.|.+++++.+|++++.+++||||+++.++.+|||+++||++
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~ 102 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVY 102 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEE
Confidence 469999999999766 33469999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEeeCCCCHHHHHHHHHHHhCC
Q 021976 133 LFVAGVRQFQFFGERTRDVISAWVREKMTL 162 (304)
Q Consensus 133 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 162 (304)
.|++|+.+..|.|...++++.+|+.++.+.
T Consensus 103 af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 103 AFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 999999999999999999999999999876
No 21
>PHA02278 thioredoxin-like protein
Probab=99.88 E-value=7.9e-22 Score=142.35 Aligned_cols=94 Identities=13% Similarity=0.153 Sum_probs=85.4
Q ss_pred ChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCccc----HHHHHhCCCccccEEEEEeCC
Q 021976 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE----KDLAKEYNILAYPTLYLFVAG 137 (304)
Q Consensus 62 ~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~v~~~Pt~~~~~~g 137 (304)
+.++|++.+.++++++|+|||+||+||+.+.|.++++++++...+.++.||++++ ++++++|+|.++||+++|++|
T Consensus 3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G 82 (103)
T PHA02278 3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDG 82 (103)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECC
Confidence 3578888888899999999999999999999999999988665678999999986 689999999999999999999
Q ss_pred eEEEEeeCCCCHHHHHHH
Q 021976 138 VRQFQFFGERTRDVISAW 155 (304)
Q Consensus 138 ~~~~~~~g~~~~~~l~~~ 155 (304)
+.+.++.|..+.+.+.++
T Consensus 83 ~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 83 QLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEEEEEeCCCCHHHHHhh
Confidence 999999999998888765
No 22
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.88 E-value=5.8e-22 Score=146.17 Aligned_cols=99 Identities=36% Similarity=0.589 Sum_probs=91.2
Q ss_pred cEEcChhcHHHHh-cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcc--cHHHHHhCCCccccEEEEE
Q 021976 58 VVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL--EKDLAKEYNILAYPTLYLF 134 (304)
Q Consensus 58 v~~l~~~~~~~~~-~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~ 134 (304)
|+++++++|++.+ +.+++++|.|||+||++|+++.|.++++++.+++.+.++.+||++ ++++|++|+|.++||+++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~ 81 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF 81 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence 6789999999888 556789999999999999999999999999998889999999999 8899999999999999999
Q ss_pred eCCe-----EEEEeeCCCCHHHHHHHH
Q 021976 135 VAGV-----RQFQFFGERTRDVISAWV 156 (304)
Q Consensus 135 ~~g~-----~~~~~~g~~~~~~l~~~i 156 (304)
++|+ ....|.|.++.++|.+||
T Consensus 82 ~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 82 RPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred eCCCcccccccccccCccCHHHHHHHh
Confidence 9774 467899999999999997
No 23
>PRK09381 trxA thioredoxin; Provisional
Probab=99.88 E-value=2.2e-21 Score=143.00 Aligned_cols=105 Identities=21% Similarity=0.406 Sum_probs=97.9
Q ss_pred CCcEEcChhcHHHH-hcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEE
Q 021976 56 KDVVSLNGKNFSEF-MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (304)
Q Consensus 56 ~~v~~l~~~~~~~~-~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 134 (304)
+.+..+++++|++. ++.+++++|+||++||++|+.+.|.++++++.+++++.++.+|++.++.++++|+|.++||+++|
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 82 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 82 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEE
Confidence 67889999999965 56689999999999999999999999999999988899999999999999999999999999999
Q ss_pred eCCeEEEEeeCCCCHHHHHHHHHHHh
Q 021976 135 VAGVRQFQFFGERTRDVISAWVREKM 160 (304)
Q Consensus 135 ~~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (304)
++|+...++.|..+.+.|..++.+++
T Consensus 83 ~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 83 KNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred eCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 99988889999999999999998765
No 24
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.88 E-value=9.2e-22 Score=145.17 Aligned_cols=100 Identities=17% Similarity=0.337 Sum_probs=90.6
Q ss_pred EEcChhcHHH-Hhc--CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcccHHHHHhCCCccccEEEEE
Q 021976 59 VSLNGKNFSE-FMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (304)
Q Consensus 59 ~~l~~~~~~~-~~~--~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 134 (304)
..++.++|++ ++. .+++++|+|||+||++|+.+.|.|+++++++++ ++.++.|||++++.+++++||.++||+++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence 3467788875 443 679999999999999999999999999999986 699999999999999999999999999999
Q ss_pred eCCeEEEEeeCCCCHHHHHHHHHH
Q 021976 135 VAGVRQFQFFGERTRDVISAWVRE 158 (304)
Q Consensus 135 ~~g~~~~~~~g~~~~~~l~~~i~~ 158 (304)
++|+.+.++.|..+.+.|.+||++
T Consensus 87 ~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 87 INGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ECCEEEEEecCCCCHHHHHHHHhc
Confidence 999888888999999999999975
No 25
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.87 E-value=6.2e-22 Score=143.78 Aligned_cols=91 Identities=19% Similarity=0.235 Sum_probs=81.7
Q ss_pred hhcHHHHhc--CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEE
Q 021976 63 GKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140 (304)
Q Consensus 63 ~~~~~~~~~--~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 140 (304)
.++|++.+. .+++++|.|||+||+||+.+.|.++++++++++.+.|++||++++++++++|+|.++||+++|++|+.+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 467887774 578999999999999999999999999999987789999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHH
Q 021976 141 FQFFGERTRDVIS 153 (304)
Q Consensus 141 ~~~~g~~~~~~l~ 153 (304)
.+..|..+.+.|.
T Consensus 82 ~~~~G~~~~~~~~ 94 (114)
T cd02954 82 KIDLGTGNNNKIN 94 (114)
T ss_pred EEEcCCCCCceEE
Confidence 8888876655443
No 26
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.87 E-value=1.8e-21 Score=140.14 Aligned_cols=92 Identities=27% Similarity=0.415 Sum_probs=85.3
Q ss_pred cHHHHh-cC-CCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEEEE
Q 021976 65 NFSEFM-GK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQ 142 (304)
Q Consensus 65 ~~~~~~-~~-~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 142 (304)
+|++.+ +. +++++|+|||+||++|+++.|.++++++.+++.+.++.||++++++++++|+|.++||+++|++|+.+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 81 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG 81 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence 577666 33 6799999999999999999999999999998788999999999999999999999999999999988889
Q ss_pred eeCCCCHHHHHHHH
Q 021976 143 FFGERTRDVISAWV 156 (304)
Q Consensus 143 ~~g~~~~~~l~~~i 156 (304)
+.|..+.+.|..|+
T Consensus 82 ~~g~~~~~~l~~~l 95 (96)
T cd02956 82 FQGAQPEEQLRQML 95 (96)
T ss_pred ecCCCCHHHHHHHh
Confidence 99999999999887
No 27
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.86 E-value=2.8e-21 Score=141.24 Aligned_cols=99 Identities=40% Similarity=0.694 Sum_probs=92.4
Q ss_pred cEEcChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhh--CCcEEEEEeCcc--cHHHHHhCCCccccEEEE
Q 021976 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYL--EKDLAKEYNILAYPTLYL 133 (304)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~ 133 (304)
+.++++.+|+..++++++++|+|||+||++|+++.|.++++++.++ +.+.++.+||++ ++.+++++||+++||+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~ 81 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY 81 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE
Confidence 6778899999999888999999999999999999999999999987 478999999998 999999999999999999
Q ss_pred EeCCeEEEEeeCCCCHHHHHHHH
Q 021976 134 FVAGVRQFQFFGERTRDVISAWV 156 (304)
Q Consensus 134 ~~~g~~~~~~~g~~~~~~l~~~i 156 (304)
|++|+.+.+|.|..+.+++.+||
T Consensus 82 ~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 82 FENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EeCCCeeEEeCCCCCHHHHHhhC
Confidence 99998889999999999998885
No 28
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.86 E-value=1.9e-21 Score=140.54 Aligned_cols=84 Identities=26% Similarity=0.626 Sum_probs=79.1
Q ss_pred cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCc-ccHHHHHhCCCccccEEEEEeCCeEEEEeeCCCCH
Q 021976 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-LEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTR 149 (304)
Q Consensus 71 ~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~ 149 (304)
.++++++|+|||+||++|+.+.|.|++++++++ ++.++.||++ +++.++++|+|.++||+++|++| .+.+|.|.++.
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~ 93 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFP-QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTL 93 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCH
Confidence 468999999999999999999999999999997 5889999999 88999999999999999999999 88999999999
Q ss_pred HHHHHHH
Q 021976 150 DVISAWV 156 (304)
Q Consensus 150 ~~l~~~i 156 (304)
++|.+|+
T Consensus 94 ~~l~~f~ 100 (100)
T cd02999 94 DSLAAFY 100 (100)
T ss_pred HHHHhhC
Confidence 9999885
No 29
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.86 E-value=3.8e-21 Score=140.27 Aligned_cols=99 Identities=37% Similarity=0.593 Sum_probs=91.3
Q ss_pred cEEcChhcHHHHh-cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeC
Q 021976 58 VVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136 (304)
Q Consensus 58 v~~l~~~~~~~~~-~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 136 (304)
|.++++++|++.+ +.+++++|.||++||++|+++.|.|.++++++++.+.++.+||+++++++++|+|+++|++++|++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~ 81 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGA 81 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECC
Confidence 6788999999887 445679999999999999999999999999998889999999999999999999999999999997
Q ss_pred C-eEEEEeeCCCCHHHHHHHH
Q 021976 137 G-VRQFQFFGERTRDVISAWV 156 (304)
Q Consensus 137 g-~~~~~~~g~~~~~~l~~~i 156 (304)
| +....|.|..+.++|.+|+
T Consensus 82 ~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 82 GKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCcceeecCCCCCHHHHHHHh
Confidence 7 5678899999999999997
No 30
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.86 E-value=1.4e-21 Score=142.35 Aligned_cols=99 Identities=23% Similarity=0.375 Sum_probs=87.1
Q ss_pred CcEEcChhcHHHHhcCCCcEEEEEEc--CCCh---hhhhhHHHHHHHHHHhhCCcEEEEEeC-----cccHHHHHhCCCc
Q 021976 57 DVVSLNGKNFSEFMGKNRNVMVMFYA--NWCY---WSKKLAPEFAAAAKMLKGEADLVMVDA-----YLEKDLAKEYNIL 126 (304)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~lv~f~a--~wC~---~C~~~~~~~~~~~~~~~~~~~~~~vd~-----~~~~~~~~~~~v~ 126 (304)
.++.|++.+|++.+.+++.+||.||| |||+ +|++++|++.+.+. .+.+++||| .++.++|++|||+
T Consensus 2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I~ 77 (116)
T cd03007 2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKLD 77 (116)
T ss_pred CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCCC
Confidence 57889999999999999999999999 8888 77777777766554 488999999 5678999999999
Q ss_pred --cccEEEEEeCCe--EEEEeeCC-CCHHHHHHHHHHH
Q 021976 127 --AYPTLYLFVAGV--RQFQFFGE-RTRDVISAWVREK 159 (304)
Q Consensus 127 --~~Pt~~~~~~g~--~~~~~~g~-~~~~~l~~~i~~~ 159 (304)
+|||+.+|++|. ....|.|+ ++.+.|.+|+.++
T Consensus 78 ~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 78 KESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred cCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999999884 56799997 9999999999875
No 31
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.86 E-value=4.3e-21 Score=139.68 Aligned_cols=99 Identities=40% Similarity=0.702 Sum_probs=92.4
Q ss_pred cChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC--CcEEEEEeCcccHHHHHhCCCccccEEEEEeCCe
Q 021976 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV 138 (304)
Q Consensus 61 l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 138 (304)
|++++|++.+.++++++|+||++||++|+++.|.|+++++.+++ ++.++.+||++++.++++|+|+++|++++|++|+
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 46789999988899999999999999999999999999999987 6999999999999999999999999999999775
Q ss_pred EEEEeeCCCCHHHHHHHHHHH
Q 021976 139 RQFQFFGERTRDVISAWVREK 159 (304)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i~~~ 159 (304)
.+.+|.|..+.++|..||.++
T Consensus 81 ~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 81 KPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred cceeecCCCCHHHHHHHHHhc
Confidence 688999999999999999875
No 32
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.86 E-value=9.9e-21 Score=137.77 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=82.8
Q ss_pred ChhcHHHHhc--CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccH---HHHHhCCCccccEEEEEeC
Q 021976 62 NGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK---DLAKEYNILAYPTLYLFVA 136 (304)
Q Consensus 62 ~~~~~~~~~~--~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~ 136 (304)
+.++|++.+. ++++++|+|||+||++|+.+.|.++++++++ +.+.|+.||++++. +++++|+|+++||+++|++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 4578888884 3799999999999999999999999999999 47999999999874 8999999999999999999
Q ss_pred CeEEEEeeCCCCHHHHHHHHHH
Q 021976 137 GVRQFQFFGERTRDVISAWVRE 158 (304)
Q Consensus 137 g~~~~~~~g~~~~~~l~~~i~~ 158 (304)
|+.+.++.|. ..+++.+.+..
T Consensus 81 G~~v~~~~G~-~~~~l~~~~~~ 101 (103)
T cd02985 81 GEKIHEEEGI-GPDELIGDVLY 101 (103)
T ss_pred CeEEEEEeCC-CHHHHHHHHHh
Confidence 9999999995 45666665543
No 33
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.85 E-value=3.2e-20 Score=143.00 Aligned_cols=90 Identities=19% Similarity=0.273 Sum_probs=82.9
Q ss_pred CCcEEcChhcHHHHhc--CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcccHHHHHhCCCcc-----
Q 021976 56 KDVVSLNGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILA----- 127 (304)
Q Consensus 56 ~~v~~l~~~~~~~~~~--~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~----- 127 (304)
..+.++++++|++.+. ++++++|+|||+||++|+++.|.++++++++++ ++.|++||++++++++++|+|.+
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~ 107 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence 5788899999998873 357899999999999999999999999999975 69999999999999999999988
Q ss_pred -ccEEEEEeCCeEEEEeeC
Q 021976 128 -YPTLYLFVAGVRQFQFFG 145 (304)
Q Consensus 128 -~Pt~~~~~~g~~~~~~~g 145 (304)
+||+++|++|+.+.++.|
T Consensus 108 ~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 108 QLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCCEEEEEECCEEEEEEec
Confidence 999999999999999887
No 34
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.85 E-value=1.4e-20 Score=136.81 Aligned_cols=96 Identities=19% Similarity=0.272 Sum_probs=87.5
Q ss_pred cChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeE
Q 021976 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR 139 (304)
Q Consensus 61 l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 139 (304)
-+.++|+..++++++++|+|||+||++|+.+.|.++++++.+++ .+.|+.+|++ +++++++|+|+++||+++|++|+.
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEE
Confidence 46788999998899999999999999999999999999999975 5789999999 788999999999999999999988
Q ss_pred EEEeeCCCCHHHHHHHHHH
Q 021976 140 QFQFFGERTRDVISAWVRE 158 (304)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~ 158 (304)
+.+..|. +.+.+.++|.+
T Consensus 84 ~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 84 VAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred EEEEecC-ChHHHHHHHhh
Confidence 8899885 78888888864
No 35
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.85 E-value=9.2e-21 Score=139.51 Aligned_cols=100 Identities=23% Similarity=0.517 Sum_probs=88.7
Q ss_pred CcEEcChhcHHHHh---cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc-cHHHHH-hCCCccccE
Q 021976 57 DVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-EKDLAK-EYNILAYPT 130 (304)
Q Consensus 57 ~v~~l~~~~~~~~~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-~~~~~~-~~~v~~~Pt 130 (304)
.|+.++.++|+..+ +++++++|.||++||++|+++.|.|+++++.+++ ++.++.|||+. +..+|+ .++|+++||
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 57889999999887 3578999999999999999999999999999987 59999999998 578887 499999999
Q ss_pred EEEEeCC-eEEEEeeCC-CCHHHHHHHH
Q 021976 131 LYLFVAG-VRQFQFFGE-RTRDVISAWV 156 (304)
Q Consensus 131 ~~~~~~g-~~~~~~~g~-~~~~~l~~~i 156 (304)
+++|++| .....|.|. ++.+.|..|+
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999854 578899995 8999998885
No 36
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.84 E-value=2.2e-20 Score=134.71 Aligned_cols=98 Identities=15% Similarity=0.196 Sum_probs=92.2
Q ss_pred CCcEEcChhcHHHHhcCCCcEEEEEEcCC--ChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEE
Q 021976 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANW--CYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYL 133 (304)
Q Consensus 56 ~~v~~l~~~~~~~~~~~~~~~lv~f~a~w--C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 133 (304)
.+...++..+|++.+..+..++|.|||+| |++|+.+.|.++++++++++.+.|+.||++++++++.+|+|.++||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~ 89 (111)
T cd02965 10 HGWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLF 89 (111)
T ss_pred cCCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEE
Confidence 46677899999999988899999999997 9999999999999999999889999999999999999999999999999
Q ss_pred EeCCeEEEEeeCCCCHHHHH
Q 021976 134 FVAGVRQFQFFGERTRDVIS 153 (304)
Q Consensus 134 ~~~g~~~~~~~g~~~~~~l~ 153 (304)
|++|+.+.++.|..+.+++.
T Consensus 90 fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 90 FRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred EECCEEEEEEeCccCHHHHh
Confidence 99999999999999988775
No 37
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.84 E-value=2.6e-20 Score=136.07 Aligned_cols=98 Identities=34% Similarity=0.641 Sum_probs=88.7
Q ss_pred cEEcChhcHHHHh-cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC--CcEEEEEeCcccHHHHHhCCCccccEEEEE
Q 021976 58 VVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (304)
Q Consensus 58 v~~l~~~~~~~~~-~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 134 (304)
|.++++++|++.+ +.+++++|+||++||++|+.+.|.|+++++.+++ .+.++.+||+++ +++..+++.++||+++|
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFF 80 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEE
Confidence 6789999999887 4468999999999999999999999999999976 699999999987 57889999999999999
Q ss_pred eCCe--EEEEeeCCCCHHHHHHHH
Q 021976 135 VAGV--RQFQFFGERTRDVISAWV 156 (304)
Q Consensus 135 ~~g~--~~~~~~g~~~~~~l~~~i 156 (304)
++|+ ...+|.|..+.+.+.+||
T Consensus 81 ~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 81 PAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred cCCCcCCceEccCCcCHHHHHhhC
Confidence 9876 578899999999999885
No 38
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.83 E-value=6.5e-20 Score=134.17 Aligned_cols=99 Identities=36% Similarity=0.672 Sum_probs=89.7
Q ss_pred cEEcChhcHHHHhcC-CCcEEEEEEcCCChhhhhhHHHHHHHHHHhh--CCcEEEEEeCcc-cHHHHHhCCCccccEEEE
Q 021976 58 VVSLNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYL-EKDLAKEYNILAYPTLYL 133 (304)
Q Consensus 58 v~~l~~~~~~~~~~~-~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~ 133 (304)
+.++++++|++.+.+ +++++|.||++||++|+++.|.|.++++.++ +++.++.+||++ ++.+|++|+|.++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 577889999988854 5699999999999999999999999999987 379999999999 999999999999999999
Q ss_pred EeCC-eEEEEeeCCCCHHHHHHHH
Q 021976 134 FVAG-VRQFQFFGERTRDVISAWV 156 (304)
Q Consensus 134 ~~~g-~~~~~~~g~~~~~~l~~~i 156 (304)
|++| +....|.|..+.+++.+|+
T Consensus 82 ~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCCCccccCCccCHHHHHhhC
Confidence 9965 6778899999999999885
No 39
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.82 E-value=1.4e-19 Score=132.16 Aligned_cols=94 Identities=29% Similarity=0.506 Sum_probs=84.3
Q ss_pred hcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC---CcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEE
Q 021976 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140 (304)
Q Consensus 64 ~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 140 (304)
++|++. .++++++|.|||+||++|+++.|.|+++++.+++ .+.++.+||++++.++++|+|.++||+++|++| ..
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~-~~ 84 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD-LA 84 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC-Cc
Confidence 677764 4577999999999999999999999999999854 488999999999999999999999999999877 56
Q ss_pred EEeeCCCCHHHHHHHHHHH
Q 021976 141 FQFFGERTRDVISAWVREK 159 (304)
Q Consensus 141 ~~~~g~~~~~~l~~~i~~~ 159 (304)
.+|.|..+.+.+.+|+++.
T Consensus 85 ~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 85 YNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred eeecCCCCHHHHHHHHHhh
Confidence 7899999999999999864
No 40
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.82 E-value=2.6e-19 Score=129.93 Aligned_cols=99 Identities=28% Similarity=0.490 Sum_probs=90.7
Q ss_pred cChhcHHHHhcC-CCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeE
Q 021976 61 LNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR 139 (304)
Q Consensus 61 l~~~~~~~~~~~-~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 139 (304)
++.++|.+.+.+ +++++|.||++||++|+++.|.++++++.+++++.++.+|+++++.++++|+|.++|++++|++|+.
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~ 80 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKE 80 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcE
Confidence 356788887754 5699999999999999999999999999998789999999999999999999999999999999988
Q ss_pred EEEeeCCCCHHHHHHHHHHH
Q 021976 140 QFQFFGERTRDVISAWVREK 159 (304)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~~ 159 (304)
...+.|..+.+.+.+|+++.
T Consensus 81 ~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 81 VDRSVGALPKAALKQLINKN 100 (101)
T ss_pred eeeecCCCCHHHHHHHHHhh
Confidence 88999999999999999875
No 41
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.82 E-value=8.9e-20 Score=132.12 Aligned_cols=97 Identities=36% Similarity=0.680 Sum_probs=90.2
Q ss_pred EcChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHh--hCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCC
Q 021976 60 SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKML--KGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG 137 (304)
Q Consensus 60 ~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~--~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 137 (304)
+++.++|.+.+.++++++|.||++||++|+++.|.|.++++.+ .+.+.++.+||+++..++++|+|.++||+++|++|
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 5788999999988889999999999999999999999999999 45899999999999999999999999999999966
Q ss_pred -eEEEEeeCCCCHHHHHHHH
Q 021976 138 -VRQFQFFGERTRDVISAWV 156 (304)
Q Consensus 138 -~~~~~~~g~~~~~~l~~~i 156 (304)
+...+|.|..+.+++.+|+
T Consensus 82 ~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 82 SKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CcccccCCCCcCHHHHHhhC
Confidence 7889999999999998874
No 42
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.82 E-value=4e-19 Score=131.13 Aligned_cols=90 Identities=23% Similarity=0.284 Sum_probs=82.3
Q ss_pred CCcEEcCh-hcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEE
Q 021976 56 KDVVSLNG-KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (304)
Q Consensus 56 ~~v~~l~~-~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 134 (304)
..+..++. ++|.+.+.++++++|+||++||++|+.+.|.+++++++++ ++.|++||++++++++++|+|.++||+++|
T Consensus 4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~f 82 (113)
T cd02989 4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKAPFLVEKLNIKVLPTVILF 82 (113)
T ss_pred CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccCHHHHHHCCCccCCEEEEE
Confidence 35666776 8999999888999999999999999999999999999987 689999999999999999999999999999
Q ss_pred eCCeEEEEeeCC
Q 021976 135 VAGVRQFQFFGE 146 (304)
Q Consensus 135 ~~g~~~~~~~g~ 146 (304)
++|+.+.++.|.
T Consensus 83 k~G~~v~~~~g~ 94 (113)
T cd02989 83 KNGKTVDRIVGF 94 (113)
T ss_pred ECCEEEEEEECc
Confidence 999988887653
No 43
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.82 E-value=2.5e-19 Score=132.66 Aligned_cols=89 Identities=25% Similarity=0.266 Sum_probs=81.6
Q ss_pred CCcEEcChhcHHHHhcCC---CcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEE
Q 021976 56 KDVVSLNGKNFSEFMGKN---RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY 132 (304)
Q Consensus 56 ~~v~~l~~~~~~~~~~~~---~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 132 (304)
..+.++++++|.+.+.+. ++++|+||++||++|+.+.|.+++++++++ ++.|++||++++ .++++|+|.++||++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~-~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA-FLVNYLDIKVLPTLL 81 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence 467888999999888544 899999999999999999999999999997 689999999999 999999999999999
Q ss_pred EEeCCeEEEEeeCC
Q 021976 133 LFVAGVRQFQFFGE 146 (304)
Q Consensus 133 ~~~~g~~~~~~~g~ 146 (304)
+|++|+.+.++.|.
T Consensus 82 ~f~~G~~v~~~~G~ 95 (113)
T cd02957 82 VYKNGELIDNIVGF 95 (113)
T ss_pred EEECCEEEEEEecH
Confidence 99999999998874
No 44
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.81 E-value=4.8e-19 Score=133.66 Aligned_cols=99 Identities=17% Similarity=0.162 Sum_probs=84.9
Q ss_pred ChhcHHHHh--cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEE-EEeCCe
Q 021976 62 NGKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY-LFVAGV 138 (304)
Q Consensus 62 ~~~~~~~~~--~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~-~~~~g~ 138 (304)
+.++|++.+ .++++++|.|||+||+||+.+.|.++++++++++.+.|++||+++++++++.|+|++.|+++ +|++|+
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCe
Confidence 467888877 45789999999999999999999999999999877899999999999999999999877666 889997
Q ss_pred -EEEEeeC--------CCCHHHHHHHHHHHh
Q 021976 139 -RQFQFFG--------ERTRDVISAWVREKM 160 (304)
Q Consensus 139 -~~~~~~g--------~~~~~~l~~~i~~~~ 160 (304)
.+.+..| ..+.+++.+-++...
T Consensus 90 ~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 90 IMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred EEEEEecccccccccccCCHHHHHHHHHHHH
Confidence 6777778 466777777666554
No 45
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.9e-19 Score=129.00 Aligned_cols=86 Identities=27% Similarity=0.453 Sum_probs=78.2
Q ss_pred cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEEEEeeCCCCHH
Q 021976 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRD 150 (304)
Q Consensus 71 ~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 150 (304)
.++++++|+|||+||+||+.+.|.+.+++.+|++ +.|++||+++..+++++++|...||+++|++|+.+.++.|....
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~- 96 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA- 96 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHH-
Confidence 4469999999999999999999999999999996 99999999999999999999999999999999999999997544
Q ss_pred HHHHHHHH
Q 021976 151 VISAWVRE 158 (304)
Q Consensus 151 ~l~~~i~~ 158 (304)
.+.+.+.+
T Consensus 97 ~l~~~i~~ 104 (106)
T KOG0907|consen 97 ELEKKIAK 104 (106)
T ss_pred HHHHHHHh
Confidence 66666654
No 46
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.81 E-value=1.6e-19 Score=131.92 Aligned_cols=94 Identities=19% Similarity=0.269 Sum_probs=85.2
Q ss_pred hcHHHHhcCCCcEEEEEEcCCChhhhhhHHHH---HHHHHHhhCCcEEEEEeCcc----cHHHHHhCCCccccEEEEEe-
Q 021976 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPTLYLFV- 135 (304)
Q Consensus 64 ~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~- 135 (304)
+.|.++++++++++|.|||+||++|+.+.|.+ .++++.+++++.++.+|+++ ..+++++|+|.++||+++|+
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 56788888999999999999999999999988 68888887789999999987 57899999999999999998
Q ss_pred -CCeEEEEeeCCCCHHHHHHHHH
Q 021976 136 -AGVRQFQFFGERTRDVISAWVR 157 (304)
Q Consensus 136 -~g~~~~~~~g~~~~~~l~~~i~ 157 (304)
+|+.+.++.|..+.+++.++|+
T Consensus 82 ~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 82 GGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCcccccccCHHHHHHHhC
Confidence 7888899999999999988873
No 47
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.81 E-value=6.4e-19 Score=135.44 Aligned_cols=99 Identities=17% Similarity=0.336 Sum_probs=88.6
Q ss_pred hhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCccc--HHHHHhCCCccccEEEEEe-CCeE
Q 021976 63 GKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE--KDLAKEYNILAYPTLYLFV-AGVR 139 (304)
Q Consensus 63 ~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~-~g~~ 139 (304)
...+++.+.++++++|+|||+||++|+.+.|.+.++++++.+.+.|+.||++.+ ..++++|+|.++||+++|+ +|+.
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence 456778888899999999999999999999999999999987777888877754 5889999999999999996 8999
Q ss_pred EEEeeCCCCHHHHHHHHHHHhC
Q 021976 140 QFQFFGERTRDVISAWVREKMT 161 (304)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~~~~ 161 (304)
+.++.|..+.++|.+++.+.+.
T Consensus 90 v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc
Confidence 9999999999999999998874
No 48
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=8.3e-19 Score=155.70 Aligned_cols=216 Identities=16% Similarity=0.197 Sum_probs=142.8
Q ss_pred cCCCcEEcChhcHHHHhcC-CCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC---CcEEEEEeCc--ccHHHHHhCCCcc
Q 021976 54 YAKDVVSLNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAY--LEKDLAKEYNILA 127 (304)
Q Consensus 54 ~~~~v~~l~~~~~~~~~~~-~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~--~~~~~~~~~~v~~ 127 (304)
.+++|+.|+.++|+.++.+ .+.++|.||++||++|++++|.|+++|+...+ -+.++.|||. .|..+|++|+|++
T Consensus 37 ~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~ 116 (606)
T KOG1731|consen 37 PDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG 116 (606)
T ss_pred CCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence 4589999999999998854 45899999999999999999999999999887 6889999995 5789999999999
Q ss_pred ccEEEEEeCC----eEEEEeeCCCCHHHHHHHHHHHhC-----------C---CceecCCHHHHHHhhccCCeEEEEEec
Q 021976 128 YPTLYLFVAG----VRQFQFFGERTRDVISAWVREKMT-----------L---GTYSITTTDEAERILTVESKLVLGFLH 189 (304)
Q Consensus 128 ~Pt~~~~~~g----~~~~~~~g~~~~~~l~~~i~~~~~-----------~---~~~~l~~~~~~~~~~~~~~~~~v~f~~ 189 (304)
+|++.+|..+ ..-..+.|+....++...+.+.+. | ++.+-++..++.+...+....+...+.
T Consensus 117 ~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvAiv~e 196 (606)
T KOG1731|consen 117 YPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVAIVFE 196 (606)
T ss_pred CceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeEEEEe
Confidence 9999999733 122455666666777776655442 2 344445555555554443323333343
Q ss_pred CCC-CccHHHHHHHhccCCceeEEEecCH---HHHhhcCCCCCCCCCeEEEEecCCCceecccCC---CCHHHHHHHHhc
Q 021976 190 DLE-GMESEELAAASKLHSDVNFYQTTSA---DVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQ---FTRLAIANFVTH 262 (304)
Q Consensus 190 ~~~-~~~~~~~~~~a~~~~~~~f~~~~~~---~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~---~~~~~i~~fi~~ 262 (304)
+.. .-.++.+.... ....+.+....+. .+++ ++.+. .|...+++++..+++.-.+. .-.+.|.++|.+
T Consensus 197 ~~~s~lg~~~~l~~l-~~~~v~vr~~~d~q~~~~~~-l~~~~---~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg~ 271 (606)
T KOG1731|consen 197 TEPSDLGWANLLNDL-PSKQVGVRARLDTQNFPLFG-LKPDN---FPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLGD 271 (606)
T ss_pred cCCcccHHHHHHhhc-cCCCcceEEEecchhccccc-cCCCC---chhhhhhcCCcccccccccccHHHHHHHHHHHhcC
Confidence 333 33444444433 2233333333333 3344 66664 89999999887554444332 223677777765
Q ss_pred ---CCCCcEEeeCcc
Q 021976 263 ---TKHPLVVTLTIH 274 (304)
Q Consensus 263 ---~~~p~~~~l~~~ 274 (304)
...|.+...+..
T Consensus 272 ~~~a~~pt~~p~~~~ 286 (606)
T KOG1731|consen 272 KNEASGPTLHPITAT 286 (606)
T ss_pred ccccCCCCcCccccc
Confidence 445555555543
No 49
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.79 E-value=1.9e-18 Score=124.40 Aligned_cols=87 Identities=16% Similarity=0.311 Sum_probs=82.4
Q ss_pred cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEEEEeeCCCCHH
Q 021976 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRD 150 (304)
Q Consensus 71 ~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 150 (304)
+++++++|.||++||++|+.+.|.++++++++.+++.++.+|++++++++++++|.++|++++|++|+.+.++.|..+.+
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~ 90 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMKS 90 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCccHH
Confidence 67899999999999999999999999999999878999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 021976 151 VISAWVR 157 (304)
Q Consensus 151 ~l~~~i~ 157 (304)
++.+|++
T Consensus 91 ~~~~~l~ 97 (97)
T cd02949 91 EYREFIE 97 (97)
T ss_pred HHHHhhC
Confidence 9988873
No 50
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.79 E-value=1.5e-18 Score=125.01 Aligned_cols=93 Identities=19% Similarity=0.321 Sum_probs=82.5
Q ss_pred hhcHHHHhcCC--CcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEE
Q 021976 63 GKNFSEFMGKN--RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140 (304)
Q Consensus 63 ~~~~~~~~~~~--~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 140 (304)
.++|++.+.+. ++++|+||++||++|+++.|.++++++++...+.++.+|++++++++++|+|.++||+++|++|+.+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence 56788888555 9999999999999999999999999999755899999999999999999999999999999999888
Q ss_pred EEeeCCCCHHHHHHHH
Q 021976 141 FQFFGERTRDVISAWV 156 (304)
Q Consensus 141 ~~~~g~~~~~~l~~~i 156 (304)
.++.|. +.++|.+.+
T Consensus 82 ~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 82 DRVSGA-DPKELAKKV 96 (97)
T ss_pred EEEeCC-CHHHHHHhh
Confidence 888885 556666654
No 51
>PTZ00051 thioredoxin; Provisional
Probab=99.78 E-value=2.8e-18 Score=123.86 Aligned_cols=90 Identities=27% Similarity=0.452 Sum_probs=81.6
Q ss_pred ChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEEE
Q 021976 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQF 141 (304)
Q Consensus 62 ~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 141 (304)
+.++++++++.+++++|+||++||++|+++.|.++++++++. ++.++.+|++++..++++|+|.++||+++|++|+.+.
T Consensus 7 ~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 85 (98)
T PTZ00051 7 SQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVVD 85 (98)
T ss_pred CHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcchHHHHHHCCCceeeEEEEEeCCeEEE
Confidence 457788888889999999999999999999999999999876 6899999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHH
Q 021976 142 QFFGERTRDVIS 153 (304)
Q Consensus 142 ~~~g~~~~~~l~ 153 (304)
++.|. ..++|.
T Consensus 86 ~~~G~-~~~~~~ 96 (98)
T PTZ00051 86 TLLGA-NDEALK 96 (98)
T ss_pred EEeCC-CHHHhh
Confidence 99996 555553
No 52
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.77 E-value=4.1e-18 Score=126.09 Aligned_cols=97 Identities=24% Similarity=0.433 Sum_probs=80.6
Q ss_pred CcEEcChhcHHHHhcC-CCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC---CcEEEEEeCcc--cHHHHHhCCCccccE
Q 021976 57 DVVSLNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYL--EKDLAKEYNILAYPT 130 (304)
Q Consensus 57 ~v~~l~~~~~~~~~~~-~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~--~~~~~~~~~v~~~Pt 130 (304)
.++++++++|++.+.+ +++++|+|||+||++|+.+.|.|+++++.+++ .+.++.+||+. ++++|++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 5788999999988844 57999999999999999999999999998864 58899999864 678999999999999
Q ss_pred EEEEeCCeE----EEEeeCC-CCHHHHH
Q 021976 131 LYLFVAGVR----QFQFFGE-RTRDVIS 153 (304)
Q Consensus 131 ~~~~~~g~~----~~~~~g~-~~~~~l~ 153 (304)
+++|++|.. -..|.|+ +..+.+.
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNELR 109 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHHH
Confidence 999997742 1356666 5555553
No 53
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.77 E-value=3.5e-18 Score=153.25 Aligned_cols=106 Identities=21% Similarity=0.454 Sum_probs=93.0
Q ss_pred ccCCCcEEcChhcHHHHhc---CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcccH-HHH-HhCCCc
Q 021976 53 LYAKDVVSLNGKNFSEFMG---KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEK-DLA-KEYNIL 126 (304)
Q Consensus 53 ~~~~~v~~l~~~~~~~~~~---~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~-~~~-~~~~v~ 126 (304)
..+..|+.|+.++|++.++ .++++||.|||+||++|+.+.|.|+++++++++ ++.|+.|||+.+. .++ ++|+|.
T Consensus 348 ~~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~ 427 (463)
T TIGR00424 348 FDSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG 427 (463)
T ss_pred cCCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCC
Confidence 3567899999999999875 688999999999999999999999999999986 5899999999764 454 789999
Q ss_pred cccEEEEEeCCe-EEEEee-CCCCHHHHHHHHHH
Q 021976 127 AYPTLYLFVAGV-RQFQFF-GERTRDVISAWVRE 158 (304)
Q Consensus 127 ~~Pt~~~~~~g~-~~~~~~-g~~~~~~l~~~i~~ 158 (304)
++||+++|++|+ ....|. |.++.+.|..|++.
T Consensus 428 ~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 428 SFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred ccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 999999999774 567898 58999999999974
No 54
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.2e-18 Score=155.27 Aligned_cols=114 Identities=26% Similarity=0.500 Sum_probs=99.8
Q ss_pred CCCCCCCccC-CCcEEcChhcHHHHh-cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC--CcEEEEEeCcccHHHHH
Q 021976 46 NNHTWPLLYA-KDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLAK 121 (304)
Q Consensus 46 ~~~~~~~~~~-~~v~~l~~~~~~~~~-~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~ 121 (304)
.++..|+.++ ..|..+-+++|+.++ ++++.+||.||||||+||+++.|.|+++|+.+++ ++.++++|.+.|. ..
T Consensus 355 kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~ 432 (493)
T KOG0190|consen 355 KSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VP 432 (493)
T ss_pred ccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--Cc
Confidence 4555566665 679999999999887 7789999999999999999999999999999998 8999999999987 45
Q ss_pred hCCCccccEEEEEeCC--eEEEEeeCCCCHHHHHHHHHHHhC
Q 021976 122 EYNILAYPTLYLFVAG--VRQFQFFGERTRDVISAWVREKMT 161 (304)
Q Consensus 122 ~~~v~~~Pt~~~~~~g--~~~~~~~g~~~~~~l~~~i~~~~~ 161 (304)
...+.++|||++|+.| +.+..|.|.++.+++..|+.+...
T Consensus 433 ~~~~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 433 SLKVDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred cccccccceEEEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 6678889999999955 358899999999999999988764
No 55
>PLN02309 5'-adenylylsulfate reductase
Probab=99.76 E-value=5.7e-18 Score=151.83 Aligned_cols=107 Identities=22% Similarity=0.485 Sum_probs=94.9
Q ss_pred ccCCCcEEcChhcHHHHh---cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCc-ccHHHHH-hCCCc
Q 021976 53 LYAKDVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY-LEKDLAK-EYNIL 126 (304)
Q Consensus 53 ~~~~~v~~l~~~~~~~~~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~-~~~~~~~-~~~v~ 126 (304)
.++..|+.++.++|++.+ +.+++++|+|||+||++|+.+.|.|+++++++++ ++.|+++||+ .+.++|+ +|+|.
T Consensus 342 ~~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~ 421 (457)
T PLN02309 342 FNSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG 421 (457)
T ss_pred cCCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCc
Confidence 345689999999999877 4689999999999999999999999999999976 6999999999 8888896 69999
Q ss_pred cccEEEEEeCCe-EEEEeeC-CCCHHHHHHHHHHH
Q 021976 127 AYPTLYLFVAGV-RQFQFFG-ERTRDVISAWVREK 159 (304)
Q Consensus 127 ~~Pt~~~~~~g~-~~~~~~g-~~~~~~l~~~i~~~ 159 (304)
++||+++|++|. ....|.| .++.+.|..|++..
T Consensus 422 ~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 422 SFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 999999999664 5678985 79999999999864
No 56
>PTZ00102 disulphide isomerase; Provisional
Probab=99.76 E-value=7.6e-18 Score=155.87 Aligned_cols=116 Identities=22% Similarity=0.388 Sum_probs=102.1
Q ss_pred CCCCccCCCcEEcChhcHHHHh-cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC--CcEEEEEeCcccHHHHHhCCC
Q 021976 49 TWPLLYAKDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLAKEYNI 125 (304)
Q Consensus 49 ~~~~~~~~~v~~l~~~~~~~~~-~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v 125 (304)
..|..+...+..+++++|++.+ +.+++++|.|||+||++|+.+.|.|+++++.+++ .+.++.+|++.+...++++++
T Consensus 350 ~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v 429 (477)
T PTZ00102 350 PIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSW 429 (477)
T ss_pred CCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCC
Confidence 3344456779999999999875 7789999999999999999999999999999875 689999999999999999999
Q ss_pred ccccEEEEEeCCe-EEEEeeCCCCHHHHHHHHHHHhCCCc
Q 021976 126 LAYPTLYLFVAGV-RQFQFFGERTRDVISAWVREKMTLGT 164 (304)
Q Consensus 126 ~~~Pt~~~~~~g~-~~~~~~g~~~~~~l~~~i~~~~~~~~ 164 (304)
+++||+++|++|+ ...+|.|.++.+.+.+|+.++...+.
T Consensus 430 ~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~~ 469 (477)
T PTZ00102 430 SAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATNPF 469 (477)
T ss_pred cccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCCCc
Confidence 9999999999664 45689999999999999999886543
No 57
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.75 E-value=1.3e-17 Score=120.12 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=70.4
Q ss_pred hcHHHHhc--CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEEE
Q 021976 64 KNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQF 141 (304)
Q Consensus 64 ~~~~~~~~--~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 141 (304)
+++++.+. ++++++|.|+|+||+||+.+.|.++++++++++.+.|+.||.++.+++++.|+|...||+++|++|+-+.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~ 82 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMK 82 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEE
Confidence 56776663 5899999999999999999999999999999855999999999999999999999999999999996543
No 58
>PTZ00062 glutaredoxin; Provisional
Probab=99.75 E-value=1.4e-16 Score=128.42 Aligned_cols=163 Identities=10% Similarity=0.079 Sum_probs=115.3
Q ss_pred ChhcHHHHhcCC-CcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEE
Q 021976 62 NGKNFSEFMGKN-RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140 (304)
Q Consensus 62 ~~~~~~~~~~~~-~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 140 (304)
+.+++++.++++ +.++++|||+||++|+.+.|.+.+++++++ .+.|+.||.+ |+|.++||+++|++|+.+
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA--------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc--------cCcccceEEEEEECCEEE
Confidence 567888888654 779999999999999999999999999997 7999999977 999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHHHhCCCceecCCHHHHHHhhccCCeEEEEEe---cCCCCccHHHHHHHhccCCceeEE-EecC
Q 021976 141 FQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFL---HDLEGMESEELAAASKLHSDVNFY-QTTS 216 (304)
Q Consensus 141 ~~~~g~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~f~---~~~~~~~~~~~~~~a~~~~~~~f~-~~~~ 216 (304)
.++.|. +...+.+++.++.++....- ..+.+++++++++.++..=- .++|....+....+.+..-.+... ...+
T Consensus 76 ~r~~G~-~~~~~~~~~~~~~~~~~~~~-~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d 153 (204)
T PTZ00062 76 NSLEGC-NTSTLVSFIRGWAQKGSSED-TVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFED 153 (204)
T ss_pred eeeeCC-CHHHHHHHHHHHcCCCCHHH-HHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCC
Confidence 999986 58899999998886544221 23445666665554443221 146766555544444433334332 3355
Q ss_pred HHHHhhcCC-CCCCCCCeEE
Q 021976 217 ADVAEFFHI-HPKSKRPALI 235 (304)
Q Consensus 217 ~~l~~~~~i-~~~~~~P~lv 235 (304)
+++.+.+.- ++.+.+|.+.
T Consensus 154 ~~~~~~l~~~sg~~TvPqVf 173 (204)
T PTZ00062 154 PDLREELKVYSNWPTYPQLY 173 (204)
T ss_pred HHHHHHHHHHhCCCCCCeEE
Confidence 555544432 2223577755
No 59
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.75 E-value=2.9e-17 Score=122.63 Aligned_cols=100 Identities=12% Similarity=0.164 Sum_probs=84.3
Q ss_pred CCcEEcChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccH-----------HHHHhCC
Q 021976 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----------DLAKEYN 124 (304)
Q Consensus 56 ~~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----------~~~~~~~ 124 (304)
+.+..++.+++.+.+++++.++|+|+++||++|+.+.|.+.+++++. ++.++.||.+.+. ++.++|+
T Consensus 6 ~~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 6 KGLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFG 83 (122)
T ss_pred ccceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcC
Confidence 45677889999999999999999999999999999999999999983 5678888887542 5556665
Q ss_pred ----CccccEEEEEeCCeEEEEeeC-CCCHHHHHHHHH
Q 021976 125 ----ILAYPTLYLFVAGVRQFQFFG-ERTRDVISAWVR 157 (304)
Q Consensus 125 ----v~~~Pt~~~~~~g~~~~~~~g-~~~~~~l~~~i~ 157 (304)
|.++||+++|++|+.+.+..| ..+.++|.+++.
T Consensus 84 i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 84 IPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 556999999999999999988 556899988863
No 60
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.75 E-value=2.1e-17 Score=131.12 Aligned_cols=102 Identities=17% Similarity=0.211 Sum_probs=87.7
Q ss_pred CCCcEEcCh-hcHHHHhcCC---CcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccE
Q 021976 55 AKDVVSLNG-KNFSEFMGKN---RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPT 130 (304)
Q Consensus 55 ~~~v~~l~~-~~~~~~~~~~---~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 130 (304)
-..+.+++. ++|.+.+.+. .+++|+||++||++|+.+.|.++++++++. .+.|++||+++. .++.+|+|.++||
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vPT 138 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALPA 138 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCCE
Confidence 367888988 9999888443 489999999999999999999999999997 799999999988 8999999999999
Q ss_pred EEEEeCCeEEEEeeCC-------CCHHHHHHHHHH
Q 021976 131 LYLFVAGVRQFQFFGE-------RTRDVISAWVRE 158 (304)
Q Consensus 131 ~~~~~~g~~~~~~~g~-------~~~~~l~~~i~~ 158 (304)
+++|++|+.+.++.|. .+.+.|..++.+
T Consensus 139 lllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 139 LLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred EEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 9999999888777653 455666666544
No 61
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.73 E-value=7.2e-17 Score=114.68 Aligned_cols=92 Identities=26% Similarity=0.492 Sum_probs=84.8
Q ss_pred hcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEEEEe
Q 021976 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQF 143 (304)
Q Consensus 64 ~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 143 (304)
++|++.+.++++++|.||++||++|+++.+.++++++. .+++.++.+|++++++++++|++.++|+++++++|+.+..+
T Consensus 1 ~~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~ 79 (93)
T cd02947 1 EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRV 79 (93)
T ss_pred CchHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEE
Confidence 35777787779999999999999999999999999998 45899999999999999999999999999999999889999
Q ss_pred eCCCCHHHHHHHH
Q 021976 144 FGERTRDVISAWV 156 (304)
Q Consensus 144 ~g~~~~~~l~~~i 156 (304)
.|..+.+.|.++|
T Consensus 80 ~g~~~~~~l~~~i 92 (93)
T cd02947 80 VGADPKEELEEFL 92 (93)
T ss_pred ecCCCHHHHHHHh
Confidence 9999989998886
No 62
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.73 E-value=4.3e-17 Score=123.11 Aligned_cols=98 Identities=17% Similarity=0.317 Sum_probs=85.1
Q ss_pred hcHHHHhcCC-CcEEEEEEcCCChhhhhhHHHHH---HHHHHhhCCcEEEEEeCccc-------------HHHHHhCCCc
Q 021976 64 KNFSEFMGKN-RNVMVMFYANWCYWSKKLAPEFA---AAAKMLKGEADLVMVDAYLE-------------KDLAKEYNIL 126 (304)
Q Consensus 64 ~~~~~~~~~~-~~~lv~f~a~wC~~C~~~~~~~~---~~~~~~~~~~~~~~vd~~~~-------------~~~~~~~~v~ 126 (304)
+.+.++.+++ ++++|.|||+||++|+++.|.+. .+.+.+++++.++.+|.+.+ .+++++|+|.
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~ 83 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR 83 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence 4567777888 99999999999999999999885 67777766788999998864 6899999999
Q ss_pred cccEEEEEe-C-CeEEEEeeCCCCHHHHHHHHHHHhC
Q 021976 127 AYPTLYLFV-A-GVRQFQFFGERTRDVISAWVREKMT 161 (304)
Q Consensus 127 ~~Pt~~~~~-~-g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (304)
++||+++++ + |+.+.++.|..+.+.+.++++....
T Consensus 84 ~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 84 FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 999999998 4 6889999999999999999987653
No 63
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.2e-17 Score=132.11 Aligned_cols=101 Identities=25% Similarity=0.319 Sum_probs=90.9
Q ss_pred cChhcHHHHh--cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCe
Q 021976 61 LNGKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV 138 (304)
Q Consensus 61 l~~~~~~~~~--~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 138 (304)
-++..|+..+ ...+.++|.|+|+||+||+..+|.|+.++++|+ +..|++||.++.+..+..+||...||+++|++|.
T Consensus 7 ~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp-~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~ 85 (288)
T KOG0908|consen 7 NSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP-GAVFLKVDVDECRGTAATNGVNAMPTFIFFRNGV 85 (288)
T ss_pred cCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc-ccEEEEEeHHHhhchhhhcCcccCceEEEEecCe
Confidence 3457788777 345899999999999999999999999999998 7899999999999999999999999999999999
Q ss_pred EEEEeeCCCCHHHHHHHHHHHhCCC
Q 021976 139 RQFQFFGERTRDVISAWVREKMTLG 163 (304)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i~~~~~~~ 163 (304)
.+..+.|. ++..|++-+.+++...
T Consensus 86 kid~~qGA-d~~gLe~kv~~~~sts 109 (288)
T KOG0908|consen 86 KIDQIQGA-DASGLEEKVAKYASTS 109 (288)
T ss_pred EeeeecCC-CHHHHHHHHHHHhccC
Confidence 99999995 7888999998887543
No 64
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.73 E-value=5.6e-17 Score=119.74 Aligned_cols=95 Identities=14% Similarity=0.238 Sum_probs=82.8
Q ss_pred cHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEEE--E
Q 021976 65 NFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQF--Q 142 (304)
Q Consensus 65 ~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~--~ 142 (304)
+|.+.+.++..++|.|||+||++|+.+.|.+++++..+ +.+.+..+|.+++++++++|+|.++||+++|++|+... +
T Consensus 14 ~~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~ 92 (113)
T cd02975 14 EFFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIR 92 (113)
T ss_pred HHHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEE
Confidence 35555666777999999999999999999999999887 47999999999999999999999999999999764332 7
Q ss_pred eeCCCCHHHHHHHHHHHh
Q 021976 143 FFGERTRDVISAWVREKM 160 (304)
Q Consensus 143 ~~g~~~~~~l~~~i~~~~ 160 (304)
+.|..+.+++.+++....
T Consensus 93 ~~G~~~~~el~~~i~~i~ 110 (113)
T cd02975 93 YYGLPAGYEFASLIEDIV 110 (113)
T ss_pred EEecCchHHHHHHHHHHH
Confidence 889999999999998765
No 65
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.67 E-value=4.1e-15 Score=119.83 Aligned_cols=88 Identities=13% Similarity=0.260 Sum_probs=74.0
Q ss_pred cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccH-----------------------HHHHhCCCcc
Q 021976 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----------------------DLAKEYNILA 127 (304)
Q Consensus 71 ~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----------------------~~~~~~~v~~ 127 (304)
.++++++|+|||+||++|++++|.+.+++++ ++.++.|+.+++. .+++.||+.+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 4689999999999999999999999998753 6778888765432 2456789999
Q ss_pred ccEEEEEe-CCeEEEEeeCCCCHHHHHHHHHHHhC
Q 021976 128 YPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (304)
Q Consensus 128 ~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (304)
+|+.++++ +|+...++.|..+.+.+.++++..+.
T Consensus 143 ~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 143 APETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred CCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 99888886 99999999999999999999987764
No 66
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.66 E-value=1.2e-15 Score=122.65 Aligned_cols=99 Identities=15% Similarity=0.191 Sum_probs=83.9
Q ss_pred CCCcEEcChhcHHHHh-cC--CCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEE
Q 021976 55 AKDVVSLNGKNFSEFM-GK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL 131 (304)
Q Consensus 55 ~~~v~~l~~~~~~~~~-~~--~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 131 (304)
-+.+..++.++|...+ .. +.+++|+||++||++|+.+.|.|+++|+++. .+.|++||+++. +.+|++.+.||+
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~~---~~~~~i~~lPTl 156 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQC---IPNYPDKNLPTI 156 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HhhCCCCCCCEE
Confidence 3688999999999665 33 3589999999999999999999999999997 799999999753 689999999999
Q ss_pred EEEeCCeEEEEeeCC-------CCHHHHHHHHH
Q 021976 132 YLFVAGVRQFQFFGE-------RTRDVISAWVR 157 (304)
Q Consensus 132 ~~~~~g~~~~~~~g~-------~~~~~l~~~i~ 157 (304)
++|++|+.+.++.|. .+.+.|..+|.
T Consensus 157 liyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 157 LVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLV 189 (192)
T ss_pred EEEECCEEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence 999999988888773 45566665554
No 67
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.66 E-value=2e-15 Score=137.25 Aligned_cols=89 Identities=25% Similarity=0.278 Sum_probs=76.5
Q ss_pred cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEE----------------------------eCcccHHHHH
Q 021976 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMV----------------------------DAYLEKDLAK 121 (304)
Q Consensus 71 ~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~v----------------------------d~~~~~~~~~ 121 (304)
.++++++|+|||+||++|++++|.+++++++++. ++.++.| +++.+..+++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 4789999999999999999999999999999874 5555544 3455677899
Q ss_pred hCCCccccEEEEEe-CCeEEEEeeCCCCHHHHHHHHHHH
Q 021976 122 EYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREK 159 (304)
Q Consensus 122 ~~~v~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~ 159 (304)
.|+|.++||++++. +|+++.++.|..+.++|.++|+..
T Consensus 134 ~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 134 SLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred HcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 99999999997775 899999999999999999999843
No 68
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.63 E-value=2.1e-15 Score=109.77 Aligned_cols=88 Identities=22% Similarity=0.263 Sum_probs=78.2
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCc--cccEEEEEeC--CeEEEEeeCCC
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNIL--AYPTLYLFVA--GVRQFQFFGER 147 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~Pt~~~~~~--g~~~~~~~g~~ 147 (304)
.++++++.|+++||++|+.+.|.++++|+++++++.|+.||+++++.+++.+|+. ++|+++++++ |+......|..
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~ 90 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEEL 90 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCcccc
Confidence 3689999999999999999999999999999989999999999999999999999 9999999997 64433334556
Q ss_pred CHHHHHHHHHHH
Q 021976 148 TRDVISAWVREK 159 (304)
Q Consensus 148 ~~~~l~~~i~~~ 159 (304)
+.++|.+|+.+.
T Consensus 91 ~~~~l~~fi~~~ 102 (103)
T cd02982 91 TAESLEEFVEDF 102 (103)
T ss_pred CHHHHHHHHHhh
Confidence 999999999864
No 69
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.63 E-value=5.9e-15 Score=117.89 Aligned_cols=103 Identities=19% Similarity=0.324 Sum_probs=84.8
Q ss_pred CcEEcChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc--------------------
Q 021976 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------- 115 (304)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------------------- 115 (304)
.+..++++.+....-++++++|+||++||++|+...+.+.++++++++ ++.++.|+++.
T Consensus 45 ~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~ 124 (173)
T PRK03147 45 VLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAI 124 (173)
T ss_pred EeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEE
Confidence 344555555543223678999999999999999999999999999986 58888888753
Q ss_pred --cHHHHHhCCCccccEEEEEe-CCeEEEEeeCCCCHHHHHHHHHHH
Q 021976 116 --EKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREK 159 (304)
Q Consensus 116 --~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~ 159 (304)
+..+++.||+.++|++++++ +|+.+..+.|..+.+++.+++.+.
T Consensus 125 d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 125 DKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 45778999999999999997 888888999999999999988754
No 70
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.63 E-value=5.4e-15 Score=102.93 Aligned_cols=80 Identities=18% Similarity=0.363 Sum_probs=72.4
Q ss_pred EEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEEEEeeCCCCHHHHHHH
Q 021976 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAW 155 (304)
Q Consensus 76 ~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 155 (304)
.+..||++||++|+.+.|.+++++++++..+.+..||+++++++++++|+.++||+++ +|+ .++.|..+.+++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHHH
Confidence 4678999999999999999999999997779999999999999999999999999976 774 378899999999999
Q ss_pred HHHH
Q 021976 156 VREK 159 (304)
Q Consensus 156 i~~~ 159 (304)
+.+.
T Consensus 78 l~~~ 81 (82)
T TIGR00411 78 IKKR 81 (82)
T ss_pred HHhh
Confidence 8764
No 71
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.62 E-value=1.4e-14 Score=112.10 Aligned_cols=87 Identities=11% Similarity=0.215 Sum_probs=68.0
Q ss_pred cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCccc------------HHHH-HhC---CCccccEEEEE
Q 021976 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE------------KDLA-KEY---NILAYPTLYLF 134 (304)
Q Consensus 71 ~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~------------~~~~-~~~---~v~~~Pt~~~~ 134 (304)
..++..+|+|||+||++|++++|.+++++++++ +.+..|+.++. .... +.+ ++.++||++++
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 345667999999999999999999999999984 55666665532 2333 345 88999999999
Q ss_pred e-CCeE-EEEeeCCCCHHHHHHHHHHH
Q 021976 135 V-AGVR-QFQFFGERTRDVISAWVREK 159 (304)
Q Consensus 135 ~-~g~~-~~~~~g~~~~~~l~~~i~~~ 159 (304)
+ +|+. ...+.|..+.+++.+.+.+.
T Consensus 126 D~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 126 NVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred eCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 7 5654 45789999999998888764
No 72
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.60 E-value=4.5e-15 Score=109.28 Aligned_cols=78 Identities=18% Similarity=0.357 Sum_probs=68.5
Q ss_pred ChhcHHHHhcC--CCcEEEEEEc-------CCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcc-------cHHHHHhCCC
Q 021976 62 NGKNFSEFMGK--NRNVMVMFYA-------NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-------EKDLAKEYNI 125 (304)
Q Consensus 62 ~~~~~~~~~~~--~~~~lv~f~a-------~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-------~~~~~~~~~v 125 (304)
+.++|.+.+.. +++++|.||| +||++|+.+.|.+++++.++++++.|+.||+++ +.++.++++|
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I 87 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL 87 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc
Confidence 45677777754 7899999999 999999999999999999998779999999976 4589999999
Q ss_pred c-cccEEEEEeCCeE
Q 021976 126 L-AYPTLYLFVAGVR 139 (304)
Q Consensus 126 ~-~~Pt~~~~~~g~~ 139 (304)
. ++||+++|++|+.
T Consensus 88 ~~~iPT~~~~~~~~~ 102 (119)
T cd02952 88 TTGVPTLLRWKTPQR 102 (119)
T ss_pred ccCCCEEEEEcCCce
Confidence 8 9999999987743
No 73
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.8e-14 Score=129.32 Aligned_cols=182 Identities=26% Similarity=0.391 Sum_probs=134.5
Q ss_pred CcEEcChhcHHHHh-cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhh--CCcEEEEEeCcccHHHHHhCCCccccEEEE
Q 021976 57 DVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYLEKDLAKEYNILAYPTLYL 133 (304)
Q Consensus 57 ~v~~l~~~~~~~~~-~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 133 (304)
.+..++..+|...+ ..+..|+|.||+|||++|+.+.|+|++++..++ ..+.++.+||+.+..+|++++|.++||+.+
T Consensus 145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 224 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKL 224 (383)
T ss_pred ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEE
Confidence 48999999999776 557889999999999999999999999999986 389999999999999999999999999999
Q ss_pred EeCCeE-EEEeeCCCCHHHHHHHHHHHhCCC-----ceecCCHH-HHHHhhc---------cCCeEEEEEecCCCCc---
Q 021976 134 FVAGVR-QFQFFGERTRDVISAWVREKMTLG-----TYSITTTD-EAERILT---------VESKLVLGFLHDLEGM--- 194 (304)
Q Consensus 134 ~~~g~~-~~~~~g~~~~~~l~~~i~~~~~~~-----~~~l~~~~-~~~~~~~---------~~~~~~v~f~~~~~~~--- 194 (304)
|++|.. ...|.|.++.+.+.+|+.+..... +.+..+.+ ....+++ ....+++.++.+|+..
T Consensus 225 f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (383)
T KOG0191|consen 225 FPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLDTAEFLDSLEKKKNKFVKFYAPWCGHCGG 304 (383)
T ss_pred ecCCCcccccccccccHHHHHHHHHhhcCCCCCCcccccccCccccccchhhhhhhhhhhHHhhhhHhhhhcchhhcccc
Confidence 998867 778889999999999999988763 33332221 0011111 2234667778788754
Q ss_pred cHHHHHHHhcc----CCceeEE---EecCHHHHhhcCCCCCCCCCeEEEEecCC
Q 021976 195 ESEELAAASKL----HSDVNFY---QTTSADVAEFFHIHPKSKRPALIFLHLEA 241 (304)
Q Consensus 195 ~~~~~~~~a~~----~~~~~f~---~~~~~~l~~~~~i~~~~~~P~lv~~~~~~ 241 (304)
....+...+.. ...+.+. +.....++....++. +|++.+++.+.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 355 (383)
T KOG0191|consen 305 FAPVYEDKAELGYPDLSKIKAAKLDCALLKSLCQKAIVRG---YPTIKLYNYGK 355 (383)
T ss_pred cchhHHHHHhccccccccceeeccccccccchhhHhhhhc---CceeEeecccc
Confidence 34444444422 2222222 234444777777776 99988887664
No 74
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.55 E-value=2e-13 Score=108.82 Aligned_cols=89 Identities=20% Similarity=0.288 Sum_probs=73.2
Q ss_pred hcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeC-----------------------cccHHHHHhCCCc
Q 021976 70 MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA-----------------------YLEKDLAKEYNIL 126 (304)
Q Consensus 70 ~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~-----------------------~~~~~~~~~~~v~ 126 (304)
..++++++|+||++||++|+++.|.+++++++ ++.++.|+. +.+..+.+.|++.
T Consensus 60 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~ 136 (173)
T TIGR00385 60 FIQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVY 136 (173)
T ss_pred hcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCe
Confidence 34689999999999999999999999988764 466666654 3334567789999
Q ss_pred cccEEEEEe-CCeEEEEeeCCCCHHHHHHHHHHHhC
Q 021976 127 AYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (304)
Q Consensus 127 ~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (304)
++|+.++++ +|+.+.++.|..+.+++.+++.+.++
T Consensus 137 ~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 137 GAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred eCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 999877775 89889999999999999999988763
No 75
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.55 E-value=8.4e-15 Score=108.65 Aligned_cols=96 Identities=17% Similarity=0.267 Sum_probs=70.9
Q ss_pred hcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccH-HHHHhCCCcc--ccEEEEEe-CCeE
Q 021976 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-DLAKEYNILA--YPTLYLFV-AGVR 139 (304)
Q Consensus 64 ~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~--~Pt~~~~~-~g~~ 139 (304)
+.+.....++++++|.|||+||++|+.+.|.+.+.+........|+.||.+.++ ...++|++.+ +||+++++ +|+.
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~ 89 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDV 89 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCC
Confidence 344455577899999999999999999999999987765444456666666554 4567899986 99999997 8877
Q ss_pred EE---EeeCCCCHHHHHHHHHHH
Q 021976 140 QF---QFFGERTRDVISAWVREK 159 (304)
Q Consensus 140 ~~---~~~g~~~~~~l~~~i~~~ 159 (304)
+. ...|..+.+.+.+.+...
T Consensus 90 ~~~~~~~~~~~~~~~f~~~~~~~ 112 (117)
T cd02959 90 HPEIINKKGNPNYKYFYSSAAQV 112 (117)
T ss_pred chhhccCCCCccccccCCCHHHH
Confidence 55 455666666655555443
No 76
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.53 E-value=2e-13 Score=107.43 Aligned_cols=84 Identities=13% Similarity=0.185 Sum_probs=69.8
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCccc-------------HHHHHhCCC--ccccEEEEEe-CCeEE
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-------------KDLAKEYNI--LAYPTLYLFV-AGVRQ 140 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-------------~~~~~~~~v--~~~Pt~~~~~-~g~~~ 140 (304)
+|+||++||++|++++|.+++++++++ +.+..|+.++. ..+.+.||+ .++|+.++++ +|+..
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 888999999999999999999999984 67777776532 236678995 6999999997 88664
Q ss_pred -EEeeCCCCHHHHHHHHHHHhCC
Q 021976 141 -FQFFGERTRDVISAWVREKMTL 162 (304)
Q Consensus 141 -~~~~g~~~~~~l~~~i~~~~~~ 162 (304)
..+.|..+.+++.+.+.+.+..
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHHhh
Confidence 4799999999999998887754
No 77
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.53 E-value=1.2e-12 Score=120.69 Aligned_cols=207 Identities=14% Similarity=0.225 Sum_probs=152.9
Q ss_pred CCcEEcChhcHHHHhcCCCcEEEEEE--cCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcccHHHHHhCCCc--cccE
Q 021976 56 KDVVSLNGKNFSEFMGKNRNVMVMFY--ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNIL--AYPT 130 (304)
Q Consensus 56 ~~v~~l~~~~~~~~~~~~~~~lv~f~--a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~--~~Pt 130 (304)
+.+..++..++......+ +.++.|+ .....+|+.+...+.++++++.+ .+.|+.+|+++.+.+++.+|+. .+|+
T Consensus 217 p~v~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~~~~~~P~ 295 (462)
T TIGR01130 217 PLVGEFTQETAAKYFESG-PLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGLKAEKFPA 295 (462)
T ss_pred CceEeeCCcchhhHhCCC-CceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHHcCCCccCCce
Confidence 456778888888777555 4444443 34566789999999999999996 8999999999999999999998 6999
Q ss_pred EEEEe-CCeEEEEeeC-CCCHHHHHHHHHHHhCCC-----------------ceecCCHHHHHHhh-ccCCeEEEEEecC
Q 021976 131 LYLFV-AGVRQFQFFG-ERTRDVISAWVREKMTLG-----------------TYSITTTDEAERIL-TVESKLVLGFLHD 190 (304)
Q Consensus 131 ~~~~~-~g~~~~~~~g-~~~~~~l~~~i~~~~~~~-----------------~~~l~~~~~~~~~~-~~~~~~~v~f~~~ 190 (304)
++++. +|.....+.+ ..+.+.|.+|+.+.+... +..+. ..++.+.. +.+..++|.|+++
T Consensus 296 ~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~-~~~f~~~v~~~~~~vlv~f~a~ 374 (462)
T TIGR01130 296 VAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLV-GKNFDEIVLDETKDVLVEFYAP 374 (462)
T ss_pred EEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEee-CcCHHHHhccCCCeEEEEEECC
Confidence 99997 4423344555 788999999999976421 22232 24455544 4577899999999
Q ss_pred CCCcc---HHHHHHHh-ccCC---ceeEEEe--cCHHHHhhcCCCCCCCCCeEEEEecCCC-ceecccCCCCHHHHHHHH
Q 021976 191 LEGME---SEELAAAS-KLHS---DVNFYQT--TSADVAEFFHIHPKSKRPALIFLHLEAG-KATPFRHQFTRLAIANFV 260 (304)
Q Consensus 191 ~~~~~---~~~~~~~a-~~~~---~~~f~~~--~~~~l~~~~~i~~~~~~P~lv~~~~~~~-~~~~y~g~~~~~~i~~fi 260 (304)
||+++ ...+..++ .+.+ ++.|+.. ...++.. +++.+ +|++++|+.++. .+..|.|..+.++|.+||
T Consensus 375 wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~~-~~i~~---~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l 450 (462)
T TIGR01130 375 WCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPP-FEVEG---FPTIKFVPAGKKSEPVPYDGDRTLEDFSKFI 450 (462)
T ss_pred CCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccCC-CCccc---cCEEEEEeCCCCcCceEecCcCCHHHHHHHH
Confidence 99874 34455555 3444 5666643 2334555 88886 999999998875 468899999999999999
Q ss_pred hcCCCCcE
Q 021976 261 THTKHPLV 268 (304)
Q Consensus 261 ~~~~~p~~ 268 (304)
.++....+
T Consensus 451 ~~~~~~~~ 458 (462)
T TIGR01130 451 AKHATFPL 458 (462)
T ss_pred HhcCCCCC
Confidence 98775443
No 78
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.51 E-value=6e-14 Score=103.74 Aligned_cols=86 Identities=24% Similarity=0.483 Sum_probs=66.9
Q ss_pred cCCCcEEEEEEcCCChhhhhhHHHHHH---HHHHhhCCcEEEEEeCccc--------------------HHHHHhCCCcc
Q 021976 71 GKNRNVMVMFYANWCYWSKKLAPEFAA---AAKMLKGEADLVMVDAYLE--------------------KDLAKEYNILA 127 (304)
Q Consensus 71 ~~~~~~lv~f~a~wC~~C~~~~~~~~~---~~~~~~~~~~~~~vd~~~~--------------------~~~~~~~~v~~ 127 (304)
.+++++++.||++||++|+++.+.+.+ +...++.++.++.++++.. .++.+++||.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 367899999999999999999999885 4445555678888887653 35889999999
Q ss_pred ccEEEEEe-CCeEEEEeeCCCCHHHHHHHH
Q 021976 128 YPTLYLFV-AGVRQFQFFGERTRDVISAWV 156 (304)
Q Consensus 128 ~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i 156 (304)
+||+++++ +|+.+.++.|..+.++|.++|
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999997 898898999999999998875
No 79
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.48 E-value=3.3e-13 Score=102.08 Aligned_cols=79 Identities=16% Similarity=0.349 Sum_probs=66.0
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEe-----------------------CcccHHHHHhCCCccc
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD-----------------------AYLEKDLAKEYNILAY 128 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd-----------------------~~~~~~~~~~~~v~~~ 128 (304)
++++++|+||++||++|+++.|.++++++++ ++.++.|+ ++.+..+++.|++.++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 5789999999999999999999999998876 25566555 3455678889999999
Q ss_pred cEEEEEe-CCeEEEEeeCCCCHHHH
Q 021976 129 PTLYLFV-AGVRQFQFFGERTRDVI 152 (304)
Q Consensus 129 Pt~~~~~-~g~~~~~~~g~~~~~~l 152 (304)
|+.++++ +|+.+.++.|..+.+.|
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHhc
Confidence 9777775 99889999999887754
No 80
>PHA02125 thioredoxin-like protein
Probab=99.48 E-value=4.6e-13 Score=91.24 Aligned_cols=70 Identities=26% Similarity=0.325 Sum_probs=58.3
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEEEEeeCC-CCHHHHHHH
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGE-RTRDVISAW 155 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~l~~~ 155 (304)
++.|||+||++|+.+.|.+++++ +.++.||++++.+++++|+|.++||++ +|+.+.++.|. .+..+|.+-
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHH
Confidence 68999999999999999997653 468999999999999999999999987 67777888885 444555543
No 81
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.48 E-value=3.6e-13 Score=100.32 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=74.3
Q ss_pred ChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHH-H--HHHHHHhhCCcEEEEEeCcccHHHHHh--------CCCccccE
Q 021976 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPE-F--AAAAKMLKGEADLVMVDAYLEKDLAKE--------YNILAYPT 130 (304)
Q Consensus 62 ~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~-~--~~~~~~~~~~~~~~~vd~~~~~~~~~~--------~~v~~~Pt 130 (304)
+++.+..+.+++|+++|.|+|+||++|+.+.+. + .++++.+.+++.++.+|.+++++++++ ||+.++|+
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence 456778888899999999999999999999874 3 467777666889999999988777653 58999999
Q ss_pred EEEEe-CCeEEEEeeCC-----CCHHHHHHHHHH
Q 021976 131 LYLFV-AGVRQFQFFGE-----RTRDVISAWVRE 158 (304)
Q Consensus 131 ~~~~~-~g~~~~~~~g~-----~~~~~l~~~i~~ 158 (304)
+++++ +|+.+....+. .+...+.+++.+
T Consensus 84 ~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (124)
T cd02955 84 NVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEK 117 (124)
T ss_pred EEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHH
Confidence 99997 78776544322 334455555544
No 82
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.48 E-value=4.1e-13 Score=110.83 Aligned_cols=94 Identities=15% Similarity=0.185 Sum_probs=77.1
Q ss_pred cChhcHHHHhcCCCc-EEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeE
Q 021976 61 LNGKNFSEFMGKNRN-VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR 139 (304)
Q Consensus 61 l~~~~~~~~~~~~~~-~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 139 (304)
++.+..+.+-...++ .++.||++||++|+.+.|.+++++.+.. .+.+..+|.+++++++++|||.++||++++++|+.
T Consensus 120 L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~-~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~ 198 (215)
T TIGR02187 120 LSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND-KILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE 198 (215)
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC-ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE
Confidence 344444433333344 5666999999999999999999998854 78899999999999999999999999999988843
Q ss_pred EEEeeCCCCHHHHHHHHHH
Q 021976 140 QFQFFGERTRDVISAWVRE 158 (304)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~ 158 (304)
+.|..+.+++.+|+.+
T Consensus 199 ---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 199 ---FVGAYPEEQFLEYILS 214 (215)
T ss_pred ---EECCCCHHHHHHHHHh
Confidence 8899999999999875
No 83
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.47 E-value=2.8e-13 Score=126.71 Aligned_cols=98 Identities=24% Similarity=0.425 Sum_probs=82.3
Q ss_pred ChhcHHHHh----cCCCcEEEEEEcCCChhhhhhHHHH---HHHHHHhhCCcEEEEEeCccc----HHHHHhCCCccccE
Q 021976 62 NGKNFSEFM----GKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLE----KDLAKEYNILAYPT 130 (304)
Q Consensus 62 ~~~~~~~~~----~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~v~~~Pt 130 (304)
+.+++++.+ .++|+++|+|||+||++|+.+.+.. .++.+.++ ++.++++|++++ .+++++|++.++||
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt 537 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPT 537 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCE
Confidence 456777655 3478999999999999999998875 67777776 688999999853 68899999999999
Q ss_pred EEEEe-CCeE--EEEeeCCCCHHHHHHHHHHHh
Q 021976 131 LYLFV-AGVR--QFQFFGERTRDVISAWVREKM 160 (304)
Q Consensus 131 ~~~~~-~g~~--~~~~~g~~~~~~l~~~i~~~~ 160 (304)
+++|+ +|++ ..++.|..+.+++.+++++..
T Consensus 538 ~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 538 ILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred EEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 99997 7876 367889999999999998753
No 84
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.47 E-value=3.7e-13 Score=91.88 Aligned_cols=72 Identities=17% Similarity=0.239 Sum_probs=60.4
Q ss_pred EEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEEEEeeCC-CCHHHHHHHH
Q 021976 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGE-RTRDVISAWV 156 (304)
Q Consensus 78 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~l~~~i 156 (304)
|.||++||++|+.+.|.++++++++...+.+..|| +.+.+.+||+.++||+++ +|+.+ +.|. .+.+++.+++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEIL 75 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHHh
Confidence 78999999999999999999999998778888887 344578899999999999 88655 7774 4557777765
No 85
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.47 E-value=3.1e-13 Score=103.39 Aligned_cols=71 Identities=20% Similarity=0.256 Sum_probs=58.6
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC--------CcEEEEEeCccc-------------------------HH
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--------EADLVMVDAYLE-------------------------KD 118 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~--------~~~~~~vd~~~~-------------------------~~ 118 (304)
++++++|+|||+||++|++++|.+.++++++++ ++.++.|+.+++ ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 689999999999999999999999999886653 478888886542 24
Q ss_pred HHHhCCCccccEEEEEe-CCeEEEE
Q 021976 119 LAKEYNILAYPTLYLFV-AGVRQFQ 142 (304)
Q Consensus 119 ~~~~~~v~~~Pt~~~~~-~g~~~~~ 142 (304)
++++|++.++|++++++ +|+.+.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEee
Confidence 77889999999999998 7855543
No 86
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.47 E-value=1.6e-11 Score=98.87 Aligned_cols=167 Identities=21% Similarity=0.324 Sum_probs=129.5
Q ss_pred hhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCC-eEEEEeeCC-CCHHHHHHHHHHHhCCCceec
Q 021976 90 KLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG-VRQFQFFGE-RTRDVISAWVREKMTLGTYSI 167 (304)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g-~~~~~~~g~-~~~~~l~~~i~~~~~~~~~~l 167 (304)
.+...|.++|+.+.+.+.|+.+. ++++++++++.. |++++|+++ +....|.|. .+.+.|.+||....-|.+.++
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~ 82 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPEL 82 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEEE
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcccccccc
Confidence 45678999999999889999988 778999999999 999999964 467899998 899999999999999999999
Q ss_pred CCHHHHHHhhccCCeEEEEEecCCCCc----cHHHHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEec
Q 021976 168 TTTDEAERILTVESKLVLGFLHDLEGM----ESEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHL 239 (304)
Q Consensus 168 ~~~~~~~~~~~~~~~~~v~f~~~~~~~----~~~~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~P~lv~~~~ 239 (304)
+ .+++..+.....+.++.++.+.... ....+..+| +.++++.|..+ ..+.+++.+|++. ...|+++++..
T Consensus 83 t-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~-~~~P~~vi~~~ 160 (184)
T PF13848_consen 83 T-PENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDE-DDLPALVIFDS 160 (184)
T ss_dssp S-TTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTT-SSSSEEEEEET
T ss_pred c-hhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCC-ccCCEEEEEEC
Confidence 5 4678888877766344444332222 344455666 67888888865 3568999999984 46999999996
Q ss_pred CCCc-eecccCCCCHHHHHHHHhc
Q 021976 240 EAGK-ATPFRHQFTRLAIANFVTH 262 (304)
Q Consensus 240 ~~~~-~~~y~g~~~~~~i~~fi~~ 262 (304)
.+.. ...++|.++.++|.+|++.
T Consensus 161 ~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 161 NKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CCCcEEcCCCCCCCHHHHHHHhcC
Confidence 6543 3445889999999999963
No 87
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.45 E-value=1.3e-12 Score=103.43 Aligned_cols=89 Identities=10% Similarity=0.023 Sum_probs=69.2
Q ss_pred cHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEE------EEEeCcc-----------------------
Q 021976 65 NFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADL------VMVDAYL----------------------- 115 (304)
Q Consensus 65 ~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~------~~vd~~~----------------------- 115 (304)
.+...--.+|+++|+|||+||++|+.++|.+++++++ ++.+ ..||.++
T Consensus 51 ~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~ 127 (184)
T TIGR01626 51 PWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWS 127 (184)
T ss_pred eccHHHcCCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcc
Confidence 3333334599999999999999999999999999654 4555 6666543
Q ss_pred ------cHHHHHhCCCccccEE-EEEe-CCeEEEEeeCCCCHHHHHHHH
Q 021976 116 ------EKDLAKEYNILAYPTL-YLFV-AGVRQFQFFGERTRDVISAWV 156 (304)
Q Consensus 116 ------~~~~~~~~~v~~~Pt~-~~~~-~g~~~~~~~g~~~~~~l~~~i 156 (304)
+..+..+||+.+.|+. ++++ +|+....+.|..+.+++.+.+
T Consensus 128 ~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 128 QVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred eEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 2245678999999876 6776 899999999999998887733
No 88
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.43 E-value=1.8e-12 Score=110.08 Aligned_cols=88 Identities=15% Similarity=0.196 Sum_probs=73.4
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcc-----------cHHHHHhCCCccccEEEEEeC-CeE
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-----------EKDLAKEYNILAYPTLYLFVA-GVR 139 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-----------~~~~~~~~~v~~~Pt~~~~~~-g~~ 139 (304)
.++++||+|||+||++|+.+.|.+++++++++ +.+..|+.+. +..+++++||.++|+++++++ |+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 47899999999999999999999999999985 6666666654 457899999999999999985 544
Q ss_pred EE-EeeCCCCHHHHHHHHHHHhC
Q 021976 140 QF-QFFGERTRDVISAWVREKMT 161 (304)
Q Consensus 140 ~~-~~~g~~~~~~l~~~i~~~~~ 161 (304)
+. ...|..+.++|.+.+.....
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHHhc
Confidence 44 56699999999999887654
No 89
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.43 E-value=1e-12 Score=100.00 Aligned_cols=70 Identities=21% Similarity=0.400 Sum_probs=58.0
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC---CcEEEEEeCccc------------------------HHHHHhCC
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLE------------------------KDLAKEYN 124 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~------------------------~~~~~~~~ 124 (304)
++++++|+||++||++|+++.|.+.++++++.+ ++.++.|+.+.+ ..++++||
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 678999999999999999999999999988864 466666666533 35778999
Q ss_pred CccccEEEEEe-CCeEEE
Q 021976 125 ILAYPTLYLFV-AGVRQF 141 (304)
Q Consensus 125 v~~~Pt~~~~~-~g~~~~ 141 (304)
|.++|++++++ +|+.+.
T Consensus 97 v~~~P~~~lid~~G~i~~ 114 (131)
T cd03009 97 IEGIPTLIILDADGEVVT 114 (131)
T ss_pred CCCCCEEEEECCCCCEEc
Confidence 99999999998 785443
No 90
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.41 E-value=2e-12 Score=92.60 Aligned_cols=66 Identities=32% Similarity=0.549 Sum_probs=55.6
Q ss_pred CCcEEEEEEcCCChhhhhhHHHHHHHHHHhh--CCcEEEEEeCccc-------------------------HHHHHhCCC
Q 021976 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYLE-------------------------KDLAKEYNI 125 (304)
Q Consensus 73 ~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~-------------------------~~~~~~~~v 125 (304)
||+++|+|||+||++|+++.|.+.++.++++ +++.++.|+++++ ..+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999999 5888888888654 247888999
Q ss_pred ccccEEEEEe-CCe
Q 021976 126 LAYPTLYLFV-AGV 138 (304)
Q Consensus 126 ~~~Pt~~~~~-~g~ 138 (304)
.++|++++++ +|+
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 9999999998 664
No 91
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.39 E-value=1e-11 Score=92.42 Aligned_cols=107 Identities=7% Similarity=0.133 Sum_probs=91.7
Q ss_pred EEcChhcHHHHhcCCCcEEEEEEcC--CChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcccHHHHHhCCCccccEEEEEe
Q 021976 59 VSLNGKNFSEFMGKNRNVMVMFYAN--WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (304)
Q Consensus 59 ~~l~~~~~~~~~~~~~~~lv~f~a~--wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 135 (304)
..++..+++..+..+...++.|-.+ -++.+....-.+++++++|.+ ++.+++||++++++++.+|||.++||+++|+
T Consensus 20 ~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~Fk 99 (132)
T PRK11509 20 TPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFT 99 (132)
T ss_pred CccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEE
Confidence 3455678888887777666655543 367788888899999999985 5999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCHHHHHHHHHHHhCCCce
Q 021976 136 AGVRQFQFFGERTRDVISAWVREKMTLGTY 165 (304)
Q Consensus 136 ~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~ 165 (304)
+|+.+.++.|.++.+++.++|.++++.+..
T Consensus 100 dGk~v~~i~G~~~k~~l~~~I~~~L~~~~~ 129 (132)
T PRK11509 100 GGNYRGVLNGIHPWAELINLMRGLVEPQQE 129 (132)
T ss_pred CCEEEEEEeCcCCHHHHHHHHHHHhcCcCc
Confidence 999999999999999999999999876643
No 92
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.39 E-value=1.9e-12 Score=98.57 Aligned_cols=69 Identities=23% Similarity=0.410 Sum_probs=57.5
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC---CcEEEEEeCcccH-------------------------HHHHhC
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEK-------------------------DLAKEY 123 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~-------------------------~~~~~~ 123 (304)
++++++|+||++||++|+.++|.++++++++++ ++.++.|+.+.+. .+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 579999999999999999999999999998875 4677777766532 456779
Q ss_pred CCccccEEEEEe-CCeEE
Q 021976 124 NILAYPTLYLFV-AGVRQ 140 (304)
Q Consensus 124 ~v~~~Pt~~~~~-~g~~~ 140 (304)
+|.++|++++++ +|+++
T Consensus 96 ~v~~iPt~~lid~~G~iv 113 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVV 113 (132)
T ss_pred CCCCCCEEEEECCCCCEE
Confidence 999999999997 77544
No 93
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.39 E-value=2.6e-12 Score=96.57 Aligned_cols=93 Identities=17% Similarity=0.255 Sum_probs=71.2
Q ss_pred EcChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEe---------------------CcccHH
Q 021976 60 SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD---------------------AYLEKD 118 (304)
Q Consensus 60 ~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd---------------------~~~~~~ 118 (304)
+++++.+.....++++++|+||++||++|+.+.|.+.++++.+. +..+.+| ++.+.+
T Consensus 7 ~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (123)
T cd03011 7 TLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGV 84 (123)
T ss_pred cCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcH
Confidence 34455555444467999999999999999999999999988743 2222222 234567
Q ss_pred HHHhCCCccccEEEEEeCCeEEEEeeCCCCHHHHHH
Q 021976 119 LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISA 154 (304)
Q Consensus 119 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 154 (304)
++++|+|.++|+++++++|+....+.|..+.+.|.+
T Consensus 85 ~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~ 120 (123)
T cd03011 85 ISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRL 120 (123)
T ss_pred HHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHh
Confidence 999999999999999985448888999999888865
No 94
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.36 E-value=4.7e-12 Score=126.10 Aligned_cols=89 Identities=21% Similarity=0.294 Sum_probs=77.9
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeC---------------------------cccHHHHHhC
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDA---------------------------YLEKDLAKEY 123 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~---------------------------~~~~~~~~~~ 123 (304)
++++++|+|||+||++|+++.|.++++++++++ ++.++.|.+ +.+..+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 589999999999999999999999999999986 577777742 2244677899
Q ss_pred CCccccEEEEEe-CCeEEEEeeCCCCHHHHHHHHHHHh
Q 021976 124 NILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (304)
Q Consensus 124 ~v~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (304)
+|.++|++++++ +|+.+.++.|....+.+.+++.+.+
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAAL 536 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHH
Confidence 999999999995 9999999999999999999998876
No 95
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.35 E-value=5.1e-12 Score=93.26 Aligned_cols=74 Identities=32% Similarity=0.519 Sum_probs=66.8
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCccc-----------------------HHHHHhCCCcc
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE-----------------------KDLAKEYNILA 127 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~-----------------------~~~~~~~~v~~ 127 (304)
.+++++|.||++||++|+...+.+.++.+++++ ++.++.|+++.+ ..+++.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 478999999999999999999999999999964 799999999886 77899999999
Q ss_pred ccEEEEEe-CCeEEEEeeC
Q 021976 128 YPTLYLFV-AGVRQFQFFG 145 (304)
Q Consensus 128 ~Pt~~~~~-~g~~~~~~~g 145 (304)
+|++++++ +|+.+..+.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 99999997 7888888776
No 96
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.34 E-value=1e-11 Score=100.99 Aligned_cols=90 Identities=14% Similarity=0.146 Sum_probs=71.5
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc-------c----HHHHHhCCCc-------------
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E----KDLAKEYNIL------------- 126 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~----~~~~~~~~v~------------- 126 (304)
++++++|+|||+||++|++++|.+.++++++++ ++.++.|++++ + ..+++++++.
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 578999999999999999999999999999987 79999998741 1 2344555431
Q ss_pred -----------------------ccc---EEEEEe-CCeEEEEeeCCCCHHHHHHHHHHHhC
Q 021976 127 -----------------------AYP---TLYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (304)
Q Consensus 127 -----------------------~~P---t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (304)
++| +.++++ +|+.+.++.|..+.+.+.+.|.+.+.
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~ 179 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG 179 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 122 566665 89888999999999999999988774
No 97
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.34 E-value=1.5e-11 Score=101.73 Aligned_cols=103 Identities=13% Similarity=0.109 Sum_probs=77.6
Q ss_pred EEcChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc-------c----HHHH-HhCC-
Q 021976 59 VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E----KDLA-KEYN- 124 (304)
Q Consensus 59 ~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~----~~~~-~~~~- 124 (304)
.+++++.+...--++++++|+|||+||++|+.+.|.++++++++++ ++.++.|+++. + .+.+ ++++
T Consensus 85 ~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~ 164 (236)
T PLN02399 85 KDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKA 164 (236)
T ss_pred ECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCC
Confidence 3444444332222579999999999999999999999999999987 79999999741 1 1222 2322
Q ss_pred ---------------------------------CccccEEEEEe-CCeEEEEeeCCCCHHHHHHHHHHHhC
Q 021976 125 ---------------------------------ILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (304)
Q Consensus 125 ---------------------------------v~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (304)
+...|+.++++ +|+.+.+|.|..+.+++.+.|++.+.
T Consensus 165 ~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 165 EFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred CCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 12358888887 89999999999999999999988763
No 98
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.30 E-value=1.6e-11 Score=92.68 Aligned_cols=75 Identities=20% Similarity=0.320 Sum_probs=63.6
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCc---------------------------ccHHHHHhC
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY---------------------------LEKDLAKEY 123 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~---------------------------~~~~~~~~~ 123 (304)
++++++|+||++||++|+...|.++++++++++ ++.++.|+.. .+..+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 578999999999999999999999999999986 6888877541 123567889
Q ss_pred CCccccEEEEEe-CCeEEEEeeCC
Q 021976 124 NILAYPTLYLFV-AGVRQFQFFGE 146 (304)
Q Consensus 124 ~v~~~Pt~~~~~-~g~~~~~~~g~ 146 (304)
++.++|+.++++ +|+.+..+.|+
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 999999999997 89888888774
No 99
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.28 E-value=4.5e-11 Score=96.58 Aligned_cols=85 Identities=21% Similarity=0.313 Sum_probs=62.6
Q ss_pred cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCc--------------------ccHHHHHhCCCccccE
Q 021976 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY--------------------LEKDLAKEYNILAYPT 130 (304)
Q Consensus 71 ~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~--------------------~~~~~~~~~~v~~~Pt 130 (304)
.++++++|+||++||++|+++.|.+.++.++.+ +.+..|+.+ .+.++++.|++.++|+
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~ 149 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPY 149 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccce
Confidence 367899999999999999999999999987654 333333311 1346788999999999
Q ss_pred EEEEe-CCeEEEEeeCC-CCHHHHHHHHHHH
Q 021976 131 LYLFV-AGVRQFQFFGE-RTRDVISAWVREK 159 (304)
Q Consensus 131 ~~~~~-~g~~~~~~~g~-~~~~~l~~~i~~~ 159 (304)
.++++ +|+... .|. ...+.+.+.++..
T Consensus 150 ~~lID~~G~I~~--~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 150 GVLLDQDGKIRA--KGLTNTREHLESLLEAD 178 (189)
T ss_pred EEEECCCCeEEE--ccCCCCHHHHHHHHHHH
Confidence 88887 785554 353 4556777777543
No 100
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.28 E-value=1.4e-11 Score=82.01 Aligned_cols=60 Identities=22% Similarity=0.335 Sum_probs=53.6
Q ss_pred EEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCe
Q 021976 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV 138 (304)
Q Consensus 76 ~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 138 (304)
-++.|+++||++|+.+.+.++++++... ++.+..+|.++++++++++|+.++||+++ +|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~ 61 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP-NISAEMIDAAEFPDLADEYGVMSVPAIVI--NGK 61 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC-ceEEEEEEcccCHhHHHHcCCcccCEEEE--CCE
Confidence 4778999999999999999999987654 79999999999999999999999999866 553
No 101
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.28 E-value=4.7e-11 Score=92.54 Aligned_cols=78 Identities=27% Similarity=0.408 Sum_probs=66.9
Q ss_pred cCCCcEEEEEEcC-CChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc---------------------cHHHHHhCCCc-
Q 021976 71 GKNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------EKDLAKEYNIL- 126 (304)
Q Consensus 71 ~~~~~~lv~f~a~-wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~v~- 126 (304)
-++++++|.||++ ||++|+..+|.+.++++.+++ ++.++.|..+. +..+.++|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 4789999999999 999999999999999999776 68888887643 34688899988
Q ss_pred --------cccEEEEEe-CCeEEEEeeCCCC
Q 021976 127 --------AYPTLYLFV-AGVRQFQFFGERT 148 (304)
Q Consensus 127 --------~~Pt~~~~~-~g~~~~~~~g~~~ 148 (304)
++|++++++ +|++.....|..+
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 999998887 8988888888766
No 102
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.26 E-value=3.6e-11 Score=89.06 Aligned_cols=68 Identities=25% Similarity=0.344 Sum_probs=51.5
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEe---Ccc-----------------cHHHHHhCCCccccEE
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD---AYL-----------------EKDLAKEYNILAYPTL 131 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd---~~~-----------------~~~~~~~~~v~~~Pt~ 131 (304)
++++++|.||++||++|+++.|.++++++++++++.++.+. .++ +.++.++|++.++|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 47899999999999999999999999999887666666552 111 1245666777778888
Q ss_pred EEEe-CCeE
Q 021976 132 YLFV-AGVR 139 (304)
Q Consensus 132 ~~~~-~g~~ 139 (304)
++++ +|+.
T Consensus 100 ~vid~~G~v 108 (114)
T cd02967 100 VLLDEAGVI 108 (114)
T ss_pred EEECCCCeE
Confidence 8887 5643
No 103
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.26 E-value=6.5e-11 Score=83.11 Aligned_cols=77 Identities=19% Similarity=0.232 Sum_probs=65.5
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEEEEeeCCCCHHH
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDV 151 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 151 (304)
++...+..|+++||++|....+.++++++.++ ++.+..+|.++.++++++|||.++|++++ +|+... .|..+.++
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~--~G~~~~~e 85 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFG--FGRMTLEE 85 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEE--eCCCCHHH
Confidence 45667889999999999999999999999876 79999999999999999999999999965 785444 58666665
Q ss_pred HH
Q 021976 152 IS 153 (304)
Q Consensus 152 l~ 153 (304)
+.
T Consensus 86 ~~ 87 (89)
T cd03026 86 IL 87 (89)
T ss_pred Hh
Confidence 43
No 104
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=99.25 E-value=1.1e-10 Score=83.86 Aligned_cols=95 Identities=20% Similarity=0.403 Sum_probs=85.3
Q ss_pred eecCCHHHHHHhhccCCeEEEEEecCCCCccHHHHHHHh-ccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCCCc
Q 021976 165 YSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGK 243 (304)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~P~lv~~~~~~~~ 243 (304)
..+++.++++.++..++.++|+|+.+++++.+..|..+| .+++.+.|+.+.++++.+++++. .|++++|++.+..
T Consensus 2 ~~i~s~~~l~~~~~~~~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~~~~~~~~~~~~----~~~i~l~~~~~~~ 77 (97)
T cd02981 2 KELTSKEELEKFLDKDDVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTSDKEVAKKLKVK----PGSVVLFKPFEEE 77 (97)
T ss_pred eecCCHHHHHHHhccCCeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEChHHHHHHcCCC----CCceEEeCCcccC
Confidence 467888999999999999999999999999999999998 67789999999999999999876 5999999987778
Q ss_pred eecccCCCCHHHHHHHHhcC
Q 021976 244 ATPFRHQFTRLAIANFVTHT 263 (304)
Q Consensus 244 ~~~y~g~~~~~~i~~fi~~~ 263 (304)
+..|+|+.+.++|.+||..+
T Consensus 78 ~~~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 78 PVEYDGEFTEESLVEFIKDN 97 (97)
T ss_pred CccCCCCCCHHHHHHHHHhC
Confidence 88999999999999999864
No 105
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.25 E-value=1.5e-10 Score=85.75 Aligned_cols=93 Identities=13% Similarity=0.169 Sum_probs=78.1
Q ss_pred HHhcCCCcEEEEEEcCCChhhhhhHHH-H--HHHHHHhhCCcEEEEEeCc--ccHHHHHhCCCccccEEEEEe--CCeEE
Q 021976 68 EFMGKNRNVMVMFYANWCYWSKKLAPE-F--AAAAKMLKGEADLVMVDAY--LEKDLAKEYNILAYPTLYLFV--AGVRQ 140 (304)
Q Consensus 68 ~~~~~~~~~lv~f~a~wC~~C~~~~~~-~--~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~--~g~~~ 140 (304)
...+++|+++|+|+++||++|+.+... | .++.+.+++...+..+|.+ +..++++.|++.++|+++++. +|+.+
T Consensus 12 ~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l 91 (114)
T cd02958 12 EAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVL 91 (114)
T ss_pred HHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEe
Confidence 344678999999999999999998764 4 5566667667888888886 456789999999999999997 58889
Q ss_pred EEeeCCCCHHHHHHHHHHHh
Q 021976 141 FQFFGERTRDVISAWVREKM 160 (304)
Q Consensus 141 ~~~~g~~~~~~l~~~i~~~~ 160 (304)
.+..|..+.+++.+.+++..
T Consensus 92 ~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 92 KVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred EEEcCCCCHHHHHHHHHHHH
Confidence 99999999999999888765
No 106
>PLN02412 probable glutathione peroxidase
Probab=99.23 E-value=1.2e-10 Score=92.10 Aligned_cols=90 Identities=11% Similarity=0.121 Sum_probs=72.5
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc-------c-HHH----HHhCC--------------
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E-KDL----AKEYN-------------- 124 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~-~~~----~~~~~-------------- 124 (304)
++++++|+||++||++|+++.|.+.++.+++++ ++.++.|+++. + .++ +++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 579999999999999999999999999999987 79999998742 1 111 22222
Q ss_pred --------------------CccccEEEEEe-CCeEEEEeeCCCCHHHHHHHHHHHhC
Q 021976 125 --------------------ILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (304)
Q Consensus 125 --------------------v~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (304)
+.+.|+.++++ +|+.+.++.|..+.+++.+.|++.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 33358888886 89999999999999999999988764
No 107
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.22 E-value=8.8e-11 Score=94.59 Aligned_cols=94 Identities=24% Similarity=0.372 Sum_probs=85.2
Q ss_pred ecCCCCccHHHHHHHh-ccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCCCceecccCC-CCHHHHHHHHhcCCC
Q 021976 188 LHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQ-FTRLAIANFVTHTKH 265 (304)
Q Consensus 188 ~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~-~~~~~i~~fi~~~~~ 265 (304)
|.+..+...+.|..+| .+++++.|+.+.++++++.++++ .|++++|++.++++..|+|. ++.++|.+||..+++
T Consensus 1 F~~~~~~~~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~----~p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~ 76 (184)
T PF13848_consen 1 FPDKDSELFEIFEEAAEKLKGDYQFGVTFNEELAKKYGIK----EPTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF 76 (184)
T ss_dssp ESTTTSHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHCTCS----SSEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS
T ss_pred CCCcccHHHHHHHHHHHhCcCCcEEEEEcHHHHHHHhCCC----CCcEEEeccCCCCceecccccCCHHHHHHHHHHhcc
Confidence 3556678899999988 68889999999999999999998 49999999988899999998 899999999999999
Q ss_pred CcEEeeCccchhhhhcCCCC
Q 021976 266 PLVVTLTIHNAQFVFQDPRK 285 (304)
Q Consensus 266 p~~~~l~~~~~~~~~~~~~~ 285 (304)
|++.++|.+|+..++.++.+
T Consensus 77 P~v~~~t~~n~~~~~~~~~~ 96 (184)
T PF13848_consen 77 PLVPELTPENFEKLFSSPKP 96 (184)
T ss_dssp TSCEEESTTHHHHHHSTSSE
T ss_pred ccccccchhhHHHHhcCCCc
Confidence 99999999999999999865
No 108
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.20 E-value=1.4e-10 Score=105.09 Aligned_cols=101 Identities=20% Similarity=0.315 Sum_probs=82.2
Q ss_pred EEcChh-cHHHHhcCCC--cEEEEEEcCCChhhhhhHHHHH---HHHHHhhCCcEEEEEeCccc----HHHHHhCCCccc
Q 021976 59 VSLNGK-NFSEFMGKNR--NVMVMFYANWCYWSKKLAPEFA---AAAKMLKGEADLVMVDAYLE----KDLAKEYNILAY 128 (304)
Q Consensus 59 ~~l~~~-~~~~~~~~~~--~~lv~f~a~wC~~C~~~~~~~~---~~~~~~~~~~~~~~vd~~~~----~~~~~~~~v~~~ 128 (304)
..++.. ++++.+.+++ +++|+|||+||-.||.+.+..- +.+.+.+ ++...++|.+++ .++-++||+-+.
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~G~ 535 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVFGV 535 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence 334444 8888886665 9999999999999999988653 2333333 899999999865 467899999999
Q ss_pred cEEEEEe-CCeEEEEeeCCCCHHHHHHHHHHHh
Q 021976 129 PTLYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (304)
Q Consensus 129 Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (304)
|++++|. +|++.....|..+++.+.+++++..
T Consensus 536 P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 536 PTYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 9999998 8878777999999999999998753
No 109
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.19 E-value=1e-10 Score=91.30 Aligned_cols=83 Identities=14% Similarity=0.105 Sum_probs=64.2
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc-----------cHHHHHh-CC--------------
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-----------EKDLAKE-YN-------------- 124 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-----------~~~~~~~-~~-------------- 124 (304)
++++++|+|||+||+ |+.+.|.++++++++++ ++.++.|+++. -.+++++ ++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 579999999999999 99999999999999975 78898887632 1233332 32
Q ss_pred ---------Ccccc-----------EEEEEe-CCeEEEEeeCCCCHHHHHHH
Q 021976 125 ---------ILAYP-----------TLYLFV-AGVRQFQFFGERTRDVISAW 155 (304)
Q Consensus 125 ---------v~~~P-----------t~~~~~-~g~~~~~~~g~~~~~~l~~~ 155 (304)
+.++| |.++++ +|+.+.++.|..+.+++.+.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 12356 577775 89999999999988877653
No 110
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.18 E-value=2.4e-10 Score=89.26 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=69.1
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCc-------c----cHHHHHh-CCC-------------
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY-------L----EKDLAKE-YNI------------- 125 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~-------~----~~~~~~~-~~v------------- 125 (304)
++++++|+|||+||++|++.+|.+.++++++++ ++.++.|+|. + -.+.+++ +++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 578899999999999999999999999999986 7999999862 1 1223332 221
Q ss_pred -------------ccccE----EEEEe-CCeEEEEeeCCCCHHHHHHHHHHH
Q 021976 126 -------------LAYPT----LYLFV-AGVRQFQFFGERTRDVISAWVREK 159 (304)
Q Consensus 126 -------------~~~Pt----~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~ 159 (304)
.+.|+ .++++ +|+.+..|.|..+.+++.+.|++.
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 13675 66665 899999999999999998888764
No 111
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=99.18 E-value=4e-10 Score=81.56 Aligned_cols=97 Identities=13% Similarity=0.265 Sum_probs=86.2
Q ss_pred ceecCCHHHHHHhhc-cCCeEEEEEecCCCCccHHHHHHHh-ccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCC
Q 021976 164 TYSITTTDEAERILT-VESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEA 241 (304)
Q Consensus 164 ~~~l~~~~~~~~~~~-~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~P~lv~~~~~~ 241 (304)
+..+.+.++++.++. +++..+|+||....++.++.|..+| .++.++.|+.+.++++.+.+++. .|+++++++.+
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~~----~~~i~l~~~~~ 77 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATFDSKVAKKLGLK----MNEVDFYEPFM 77 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEECcHHHHHHcCCC----CCcEEEeCCCC
Confidence 567889999999999 8999999999998899999999998 57799999999999999999887 59999998766
Q ss_pred Cceecc-cCCCCHHHHHHHHhcCC
Q 021976 242 GKATPF-RHQFTRLAIANFVTHTK 264 (304)
Q Consensus 242 ~~~~~y-~g~~~~~~i~~fi~~~~ 264 (304)
.....| .|..+.++|.+||..+.
T Consensus 78 e~~~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 78 EEPVTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred CCCcccCCCCCCHHHHHHHHHHhc
Confidence 677789 88889999999998764
No 112
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.17 E-value=9.9e-11 Score=87.15 Aligned_cols=81 Identities=12% Similarity=0.091 Sum_probs=55.6
Q ss_pred HHHHhcCCCcEEEEEEcCCChhhhhhHHHH---HHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEe-CCeEEE
Q 021976 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV-AGVRQF 141 (304)
Q Consensus 66 ~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~-~g~~~~ 141 (304)
+....+++|+++|+|+++||++|+++.... .++.+..+.++..+.++.+....-....| .++||+++++ +|+.+.
T Consensus 16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~ 94 (130)
T cd02960 16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRA 94 (130)
T ss_pred HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCcc
Confidence 334447799999999999999999998865 44555555456666666542211111244 6899999997 787776
Q ss_pred EeeCCC
Q 021976 142 QFFGER 147 (304)
Q Consensus 142 ~~~g~~ 147 (304)
+..|..
T Consensus 95 ~i~Gy~ 100 (130)
T cd02960 95 DITGRY 100 (130)
T ss_pred cccccc
Confidence 666643
No 113
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=99.14 E-value=5.8e-10 Score=80.99 Aligned_cols=95 Identities=18% Similarity=0.312 Sum_probs=83.0
Q ss_pred ceecCCHHHHHHhhccCCeEEEEEecCCCCccHHHHHHHh-ccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEec---
Q 021976 164 TYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHL--- 239 (304)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~P~lv~~~~--- 239 (304)
++++++.++++.++..++..+|+||....++.++.|..+| .++.++.|+++.+.++.+.+++ . |++++|++
T Consensus 2 ~~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~-~----~~ivl~~p~~~ 76 (104)
T cd03069 2 SVELRTEAEFEKFLSDDDASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHTSDKQLLEKYGY-G----EGVVLFRPPRL 76 (104)
T ss_pred ccccCCHHHHHHHhccCCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEEChHHHHHhcCC-C----CceEEEechhh
Confidence 4677889999999999999999999998888999999988 6779999999999999999988 5 78899954
Q ss_pred ---CCCceecccCCCCHHHHHHHHhcC
Q 021976 240 ---EAGKATPFRHQFTRLAIANFVTHT 263 (304)
Q Consensus 240 ---~~~~~~~y~g~~~~~~i~~fi~~~ 263 (304)
.+.....|+|+.+.++|.+||..+
T Consensus 77 ~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 77 SNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hcccCcccccccCcCCHHHHHHHHHhh
Confidence 345667899999999999999875
No 114
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=3.8e-09 Score=79.08 Aligned_cols=113 Identities=14% Similarity=0.251 Sum_probs=84.7
Q ss_pred cHHHHhcCCCcEEEEEEcCCChhhhhhHHHH---HHHHHHhhCCcEEEEEeCcc----------------cHHHHHhCCC
Q 021976 65 NFSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYL----------------EKDLAKEYNI 125 (304)
Q Consensus 65 ~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~----------------~~~~~~~~~v 125 (304)
+...+..+++..++.|-++.|+.|.++...+ .++.+.+.+.+.++.+|++. .+++++.|+|
T Consensus 34 d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~v 113 (182)
T COG2143 34 DNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAV 113 (182)
T ss_pred HHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcc
Confidence 3444556789999999999999999998766 45666666678888888742 2589999999
Q ss_pred ccccEEEEEe-CCeEEEEeeCCCCHHHHHHHHHHHhCCCceecCCHHHHHHhh
Q 021976 126 LAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERIL 177 (304)
Q Consensus 126 ~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~ 177 (304)
+++||+++|+ +|+.+....|.++.+++..-++-.....-+...+.+++...+
T Consensus 114 rstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g~ykd~~~dedf~kk~ 166 (182)
T COG2143 114 RSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVADGKYKDTKTDEDFTKKL 166 (182)
T ss_pred ccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Confidence 9999999998 789999999999999988776544433333333344444333
No 115
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=3.4e-10 Score=89.24 Aligned_cols=88 Identities=20% Similarity=0.232 Sum_probs=74.9
Q ss_pred CcEEc-ChhcHHHHhcC--CCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcccHHHHHhCCCc------
Q 021976 57 DVVSL-NGKNFSEFMGK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNIL------ 126 (304)
Q Consensus 57 ~v~~l-~~~~~~~~~~~--~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~------ 126 (304)
.+... +.+.+++.+.. ...|+|.|||.|.+.|+...|.+.+++.+|.. .+.||+||+..-++.+++|+|.
T Consensus 125 ~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~sr 204 (265)
T KOG0914|consen 125 TIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSR 204 (265)
T ss_pred heeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccc
Confidence 45556 55666666644 46799999999999999999999999999987 8999999999999999999985
Q ss_pred cccEEEEEeCCeEEEEee
Q 021976 127 AYPTLYLFVAGVRQFQFF 144 (304)
Q Consensus 127 ~~Pt~~~~~~g~~~~~~~ 144 (304)
..||+.+|++|+++.+..
T Consensus 205 QLPT~ilFq~gkE~~RrP 222 (265)
T KOG0914|consen 205 QLPTYILFQKGKEVSRRP 222 (265)
T ss_pred cCCeEEEEccchhhhcCc
Confidence 579999999998876653
No 116
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.09 E-value=2.4e-11 Score=96.97 Aligned_cols=102 Identities=20% Similarity=0.378 Sum_probs=92.9
Q ss_pred CCcEEcChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcccHHHHHhCCCccccEEEEE
Q 021976 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (304)
Q Consensus 56 ~~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 134 (304)
..+..++.+|+...+. .-|++.|+|+||+.|+...|.|+..+.--.+ ++.++.||.+.++.+.-+|-+...|||+-.
T Consensus 24 s~~~~~~eenw~~~l~--gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHv 101 (248)
T KOG0913|consen 24 SKLTRIDEENWKELLT--GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHV 101 (248)
T ss_pred ceeEEecccchhhhhc--hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEe
Confidence 3678899999998873 4599999999999999999999999887666 899999999999999999999999999999
Q ss_pred eCCeEEEEeeCCCCHHHHHHHHHHHh
Q 021976 135 VAGVRQFQFFGERTRDVISAWVREKM 160 (304)
Q Consensus 135 ~~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (304)
++| +-.+|.|+++.++++.|+...-
T Consensus 102 kDG-eFrrysgaRdk~dfisf~~~r~ 126 (248)
T KOG0913|consen 102 KDG-EFRRYSGARDKNDFISFEEHRE 126 (248)
T ss_pred ecc-ccccccCcccchhHHHHHHhhh
Confidence 999 8899999999999999997664
No 117
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.07 E-value=4.7e-10 Score=77.79 Aligned_cols=69 Identities=30% Similarity=0.391 Sum_probs=54.2
Q ss_pred HHHHhcCCCcEEEEEEcCCChhhhhhHHHH---HHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEe
Q 021976 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (304)
Q Consensus 66 ~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 135 (304)
+.++.+++++++|+|+++||++|+.+...+ .++.+.+.+++..+.+|.++.....+..+ .++|++++++
T Consensus 10 l~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 10 LAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred HHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 445557799999999999999999999877 55666566689999999987665443222 6799999885
No 118
>smart00594 UAS UAS domain.
Probab=99.07 E-value=2.5e-09 Score=80.06 Aligned_cols=88 Identities=10% Similarity=0.083 Sum_probs=70.6
Q ss_pred HhcCCCcEEEEEEcCCChhhhhhHHHH---HHHHHHhhCCcEEEEEeCcc--cHHHHHhCCCccccEEEEEe-CC-----
Q 021976 69 FMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYL--EKDLAKEYNILAYPTLYLFV-AG----- 137 (304)
Q Consensus 69 ~~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~-~g----- 137 (304)
..+++|.++|+|+++||++|+.+.... .++.+.+++++.+..+|.+. ..+++++|++.++|++.++. +|
T Consensus 23 Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~ 102 (122)
T smart00594 23 ASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVI 102 (122)
T ss_pred HHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeE
Confidence 336689999999999999999987643 45666666678887888754 45789999999999999997 44
Q ss_pred eEEEEeeCCCCHHHHHHHH
Q 021976 138 VRQFQFFGERTRDVISAWV 156 (304)
Q Consensus 138 ~~~~~~~g~~~~~~l~~~i 156 (304)
+.+.+..|..+.+++..++
T Consensus 103 ~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 103 EWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEeccccCCCCHHHHHHhh
Confidence 2466788999999998876
No 119
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.05 E-value=3.9e-09 Score=84.04 Aligned_cols=93 Identities=19% Similarity=0.282 Sum_probs=73.5
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc-----------------------------cHHHHH
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-----------------------------EKDLAK 121 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-----------------------------~~~~~~ 121 (304)
+++++||+||++||+.|....+.+.++.+++++ ++.++.|+.+. +..+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 678999999999999999999999999999975 78888888753 124677
Q ss_pred hCCCccccEEEEEe-CCeEEEEe---------eCCCCHHHHHHHHHHHhCCCc
Q 021976 122 EYNILAYPTLYLFV-AGVRQFQF---------FGERTRDVISAWVREKMTLGT 164 (304)
Q Consensus 122 ~~~v~~~Pt~~~~~-~g~~~~~~---------~g~~~~~~l~~~i~~~~~~~~ 164 (304)
.||+...|++++++ +|+.+... .+..+.+.+.+.|...+....
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 156 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP 156 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence 89999999999997 78665442 123456788888887775443
No 120
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.02 E-value=4.8e-09 Score=76.72 Aligned_cols=94 Identities=12% Similarity=0.186 Sum_probs=71.9
Q ss_pred eecCCHHHHHHhhccCCeEEEEEec--CCCCccHHHHHHHh----ccCCceeEEEe--------cCHHHHhhcCCC--CC
Q 021976 165 YSITTTDEAERILTVESKLVLGFLH--DLEGMESEELAAAS----KLHSDVNFYQT--------TSADVAEFFHIH--PK 228 (304)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~v~f~~--~~~~~~~~~~~~~a----~~~~~~~f~~~--------~~~~l~~~~~i~--~~ 228 (304)
..+ +.+++++.+.+++.++|.|+. +||+. ...+..+| .-...+.++.+ .+.+|+++|+|+ +
T Consensus 4 v~L-~~~nF~~~v~~~~~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~g- 80 (116)
T cd03007 4 VDL-DTVTFYKVIPKFKYSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKES- 80 (116)
T ss_pred eEC-ChhhHHHHHhcCCcEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCC-
Confidence 344 567889999999999999999 99984 23333333 22334555533 457899999998 6
Q ss_pred CCCCeEEEEecCC-CceecccCC-CCHHHHHHHHhcC
Q 021976 229 SKRPALIFLHLEA-GKATPFRHQ-FTRLAIANFVTHT 263 (304)
Q Consensus 229 ~~~P~lv~~~~~~-~~~~~y~g~-~~~~~i~~fi~~~ 263 (304)
+|++.+|+.++ ..+..|+|. ++.++|.+||.++
T Consensus 81 --yPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 81 --YPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred --CCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 99999999874 356899996 9999999999875
No 121
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.01 E-value=4.5e-09 Score=84.51 Aligned_cols=89 Identities=12% Similarity=0.149 Sum_probs=66.9
Q ss_pred CCCcE-EEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc-------c-H---HH-HHhC--------------
Q 021976 72 KNRNV-MVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E-K---DL-AKEY-------------- 123 (304)
Q Consensus 72 ~~~~~-lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~-~---~~-~~~~-------------- 123 (304)
+++++ ++.+||+||++|++++|.++++++++++ ++.++.|+++. + . +. .+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g 118 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG 118 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence 46654 5566999999999999999999999987 79999998641 0 1 11 1121
Q ss_pred ----------------------CCccccE---EEEEe-CCeEEEEeeCCCCHHHHHHHHHHHh
Q 021976 124 ----------------------NILAYPT---LYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (304)
Q Consensus 124 ----------------------~v~~~Pt---~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (304)
++.++|+ .++++ +|+++.+|.|..+.+.+.+.|.+.+
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll 181 (183)
T PTZ00256 119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLL 181 (183)
T ss_pred CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHh
Confidence 3446784 46665 8989999999999999988888765
No 122
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=98.98 E-value=8.1e-09 Score=75.16 Aligned_cols=97 Identities=13% Similarity=0.218 Sum_probs=82.3
Q ss_pred CceecCCHHHHHHhhccC-CeEEEEEecCCCCccHHHHHHHh-ccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEe--
Q 021976 163 GTYSITTTDEAERILTVE-SKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLH-- 238 (304)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~P~lv~~~-- 238 (304)
+++.+.+.++++.++... +..+|+||....++.++.|..+| .++.++.|+++.+.++.+.+++. .|.+++|+
T Consensus 1 ~v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t~~~~~~~~~~~~----~~~vvl~rp~ 76 (107)
T cd03068 1 PSKQLQTLKQVQEFLRDGDDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHTFDSEIFKSLKVS----PGQLVVFQPE 76 (107)
T ss_pred CceEcCCHHHHHHHHhcCCCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEEChHHHHHhcCCC----CCceEEECcH
Confidence 357788999999998877 89999999988888899999988 68899999999999999999987 58899994
Q ss_pred ----cCCCceecccCC-CCHHH-HHHHHhcC
Q 021976 239 ----LEAGKATPFRHQ-FTRLA-IANFVTHT 263 (304)
Q Consensus 239 ----~~~~~~~~y~g~-~~~~~-i~~fi~~~ 263 (304)
..+.....|+|. .+.++ |.+||.+|
T Consensus 77 ~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 77 KFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred HHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 445678889988 67755 99999875
No 123
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.97 E-value=6.2e-09 Score=79.93 Aligned_cols=85 Identities=18% Similarity=0.186 Sum_probs=69.9
Q ss_pred CCCcEEEEEE-cCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc---------------------cHHHHHhCCCccc
Q 021976 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------EKDLAKEYNILAY 128 (304)
Q Consensus 72 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~v~~~ 128 (304)
.+++++|.|| +.||+.|....+.+.++.+++++ ++.++.|..+. +..+++.||+...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 4789999999 58999999999999999998875 67787776532 3467888999888
Q ss_pred ---------cEEEEEe-CCeEEEEeeCCCCHHHHHHHH
Q 021976 129 ---------PTLYLFV-AGVRQFQFFGERTRDVISAWV 156 (304)
Q Consensus 129 ---------Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i 156 (304)
|++++++ +|+....+.|....+.+.+-+
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 8999997 798999999988777776543
No 124
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.94 E-value=6.7e-09 Score=75.10 Aligned_cols=91 Identities=12% Similarity=0.258 Sum_probs=73.2
Q ss_pred CHHHHHHhhcc-CCeEEEEEecCCCCcc---HHHHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecC
Q 021976 169 TTDEAERILTV-ESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLE 240 (304)
Q Consensus 169 ~~~~~~~~~~~-~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~P~lv~~~~~ 240 (304)
+.+++++.+.+ ++.++|.|+.+||+++ ...+..++ .+.+++.|+.+ .+++++++|++++ +|++++|+.+
T Consensus 5 t~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~---~Pt~~~~~~g 81 (103)
T PF00085_consen 5 TDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKS---VPTIIFFKNG 81 (103)
T ss_dssp STTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSS---SSEEEEEETT
T ss_pred CHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCC---CCEEEEEECC
Confidence 45667777776 8899999999999874 44455555 35547887765 6789999999997 9999999988
Q ss_pred CCceecccCCCCHHHHHHHHhcC
Q 021976 241 AGKATPFRHQFTRLAIANFVTHT 263 (304)
Q Consensus 241 ~~~~~~y~g~~~~~~i~~fi~~~ 263 (304)
. ....|.|..+.++|.+||++|
T Consensus 82 ~-~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 82 K-EVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp E-EEEEEESSSSHHHHHHHHHHH
T ss_pred c-EEEEEECCCCHHHHHHHHHcC
Confidence 6 555999999999999999875
No 125
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.94 E-value=1.1e-08 Score=74.34 Aligned_cols=94 Identities=15% Similarity=0.200 Sum_probs=72.8
Q ss_pred CceecCCHHHHHHhh-ccCCeEEEEEecCCCCcc---HHHHHHHh-ccCCceeEEE---ecCHHHHhhcCCCCCCCCCeE
Q 021976 163 GTYSITTTDEAERIL-TVESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQ---TTSADVAEFFHIHPKSKRPAL 234 (304)
Q Consensus 163 ~~~~l~~~~~~~~~~-~~~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~---~~~~~l~~~~~i~~~~~~P~l 234 (304)
.+.++ +.+++++.+ ++..+++|.|+++||.++ ...+..++ .+.+.+.|+. ..++++++++++.+ +|++
T Consensus 2 ~v~~l-~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~---~Pt~ 77 (104)
T cd03004 2 SVITL-TPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRA---YPTI 77 (104)
T ss_pred cceEc-CHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCc---ccEE
Confidence 34556 456777665 446689999999999874 45566665 4556677664 36789999999997 9999
Q ss_pred EEEecCCCceecccCCCC-HHHHHHHH
Q 021976 235 IFLHLEAGKATPFRHQFT-RLAIANFV 260 (304)
Q Consensus 235 v~~~~~~~~~~~y~g~~~-~~~i~~fi 260 (304)
++|+.+++....|.|..+ .++|.+||
T Consensus 78 ~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 78 RLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 999988668899999886 99999986
No 126
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.92 E-value=1.8e-08 Score=72.85 Aligned_cols=93 Identities=4% Similarity=0.067 Sum_probs=73.0
Q ss_pred CceecCCHHHHHHhhccCCeEEEEEecCCCCcc---HHHHHHHh-ccCCceeEEE---ecCHHHHhhcCCCCCCCCCeEE
Q 021976 163 GTYSITTTDEAERILTVESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQ---TTSADVAEFFHIHPKSKRPALI 235 (304)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~---~~~~~l~~~~~i~~~~~~P~lv 235 (304)
.+..+ +.++++..+.+..+++|.|+.+||+++ ...+.+++ .+.+.+.|+. ..+++++++++++. +|+++
T Consensus 2 ~~~~l-~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~---~Pt~~ 77 (101)
T cd03003 2 EIVTL-DRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNS---YPSLY 77 (101)
T ss_pred CeEEc-CHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCc---cCEEE
Confidence 34556 456788888778899999999999874 44566666 4666666664 46789999999996 99999
Q ss_pred EEecCCCceecccCCCCHHHHHHHH
Q 021976 236 FLHLEAGKATPFRHQFTRLAIANFV 260 (304)
Q Consensus 236 ~~~~~~~~~~~y~g~~~~~~i~~fi 260 (304)
+|+.+. ....|.|..+.++|.+|.
T Consensus 78 ~~~~g~-~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 78 VFPSGM-NPEKYYGDRSKESLVKFA 101 (101)
T ss_pred EEcCCC-CcccCCCCCCHHHHHhhC
Confidence 998664 578899999999999873
No 127
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.91 E-value=6.7e-09 Score=76.59 Aligned_cols=83 Identities=28% Similarity=0.468 Sum_probs=69.1
Q ss_pred CCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCc-ccHHHHHhCC--CccccEEEEEeCCeEEEEeeC--CC
Q 021976 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-LEKDLAKEYN--ILAYPTLYLFVAGVRQFQFFG--ER 147 (304)
Q Consensus 73 ~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g--~~ 147 (304)
++++++.||++||++|+.+.|.+.++++++...+.+..+|.. .++.+...++ +..+|++.++.+|.......| ..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 788999999999999999999999999999877899999997 7899999999 999999998888865545555 34
Q ss_pred CHHHHHHH
Q 021976 148 TRDVISAW 155 (304)
Q Consensus 148 ~~~~l~~~ 155 (304)
....+...
T Consensus 112 ~~~~~~~~ 119 (127)
T COG0526 112 PKEALIDA 119 (127)
T ss_pred CHHHHHHH
Confidence 44444433
No 128
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.91 E-value=1.5e-08 Score=74.33 Aligned_cols=94 Identities=11% Similarity=0.106 Sum_probs=72.1
Q ss_pred CCceecCCHHHHHHh---hccCCeEEEEEecCCCCcc---HHHHHHHh-ccCCceeEEEe---cCHHHH-hhcCCCCCCC
Q 021976 162 LGTYSITTTDEAERI---LTVESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQT---TSADVA-EFFHIHPKSK 230 (304)
Q Consensus 162 ~~~~~l~~~~~~~~~---~~~~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~---~~~~l~-~~~~i~~~~~ 230 (304)
+.+.+++ .+++++. .+++..++|.|+.+||+++ ...+.+++ .+.+.+.|+.+ .+.+++ ++|+|.+
T Consensus 9 ~~v~~l~-~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~--- 84 (113)
T cd03006 9 SPVLDFY-KGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFY--- 84 (113)
T ss_pred CCeEEec-hhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcc---
Confidence 4556663 3455554 6778899999999999974 45566666 46666776654 577888 5899996
Q ss_pred CCeEEEEecCCCceecccCCCCHHHHHHHH
Q 021976 231 RPALIFLHLEAGKATPFRHQFTRLAIANFV 260 (304)
Q Consensus 231 ~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi 260 (304)
+|++.+|++++ ....|.|..+.+.|..|+
T Consensus 85 ~PTl~lf~~g~-~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 85 FPVIHLYYRSR-GPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred cCEEEEEECCc-cceEEeCCCCHHHHHhhC
Confidence 99999998765 678899999999999884
No 129
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.86 E-value=4e-08 Score=71.92 Aligned_cols=93 Identities=20% Similarity=0.299 Sum_probs=71.2
Q ss_pred ceecCCHHHHHHhhccCCeEEEEEecCCCCcc---HHHHHHHhc-c------CCceeEEE---ecCHHHHhhcCCCCCCC
Q 021976 164 TYSITTTDEAERILTVESKLVLGFLHDLEGME---SEELAAASK-L------HSDVNFYQ---TTSADVAEFFHIHPKSK 230 (304)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~v~f~~~~~~~~---~~~~~~~a~-~------~~~~~f~~---~~~~~l~~~~~i~~~~~ 230 (304)
+.++ +.+++++.++.++.++|.|+.+||..+ .+.+..+++ + .+++.|+. ..+++++++|++++
T Consensus 3 v~~l-~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~--- 78 (108)
T cd02996 3 IVSL-TSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINK--- 78 (108)
T ss_pred eEEc-CHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCc---
Confidence 4555 456788888888889999999999863 344444442 2 12466664 46889999999997
Q ss_pred CCeEEEEecCCCceecccCCCCHHHHHHHH
Q 021976 231 RPALIFLHLEAGKATPFRHQFTRLAIANFV 260 (304)
Q Consensus 231 ~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi 260 (304)
+|++++|+.+......|.|..+.++|.+||
T Consensus 79 ~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 79 YPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 999999988764568899999999999996
No 130
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.85 E-value=2.1e-08 Score=67.65 Aligned_cols=68 Identities=12% Similarity=0.178 Sum_probs=53.6
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHH----HHHhCCCccccEEEEEeCCeEEEEeeCCCCHHHH
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVI 152 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 152 (304)
+..|+++||++|++..+.+++ .++.+..+|++++++ +.+.+|+.++|++++. |+. ..| .+.+.|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g-~~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVG-FDPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---Eee-CCHHHH
Confidence 567999999999999888765 268889999987754 5667999999999874 633 556 477888
Q ss_pred HHHH
Q 021976 153 SAWV 156 (304)
Q Consensus 153 ~~~i 156 (304)
.+++
T Consensus 70 ~~~i 73 (74)
T TIGR02196 70 DQLL 73 (74)
T ss_pred HHHh
Confidence 8876
No 131
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.83 E-value=1e-08 Score=77.90 Aligned_cols=69 Identities=22% Similarity=0.441 Sum_probs=56.9
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCC---cEEEEEeCccc-------------------------HHHHHhC
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGE---ADLVMVDAYLE-------------------------KDLAKEY 123 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~-------------------------~~~~~~~ 123 (304)
.+|.+.++|-|.||+|||.+-|.+.++.++.++. +-++-|+.|.+ .+++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 5799999999999999999999999999998874 55555554432 3688999
Q ss_pred CCccccEEEEEe-CCeEE
Q 021976 124 NILAYPTLYLFV-AGVRQ 140 (304)
Q Consensus 124 ~v~~~Pt~~~~~-~g~~~ 140 (304)
+|.++|++.+.+ +|..+
T Consensus 112 ~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVV 129 (157)
T ss_pred ccCcCceeEEecCCCCEe
Confidence 999999999987 77544
No 132
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.82 E-value=5.9e-07 Score=84.70 Aligned_cols=179 Identities=13% Similarity=0.113 Sum_probs=131.1
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEe-CCe-EEEEeeCCCCH
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV-AGV-RQFQFFGERTR 149 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~-~g~-~~~~~~g~~~~ 149 (304)
++++.++.|+.+.|..|.+....++++++.- +++.+...|..++.+++++|++...|++.+++ +|+ .-.+|.|...-
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s-~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G 443 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFASLS-EKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSG 443 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHHhcC-CcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCcc
Confidence 3456788999999999999999999999654 47888889999999999999999999999996 553 34789998888
Q ss_pred HHHHHHHHHHhCC--CceecCCHHHHHHhhccCCe-EEEEEecCCCCccHHHH---HHHhccCCceeEE---EecCHHHH
Q 021976 150 DVISAWVREKMTL--GTYSITTTDEAERILTVESK-LVLGFLHDLEGMESEEL---AAASKLHSDVNFY---QTTSADVA 220 (304)
Q Consensus 150 ~~l~~~i~~~~~~--~~~~l~~~~~~~~~~~~~~~-~~v~f~~~~~~~~~~~~---~~~a~~~~~~~f~---~~~~~~l~ 220 (304)
.++..++...+.. .-..+ +.+..+.+..-+.+ .+-.|+.++|..+.... ..++....++... ....++++
T Consensus 444 ~Ef~s~i~~i~~~~~~~~~l-~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~ 522 (555)
T TIGR03143 444 HELNSFILALYNAAGPGQPL-GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLK 522 (555)
T ss_pred HhHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHH
Confidence 8888887776532 23333 44545544443444 45567899998765543 3344343345433 35788999
Q ss_pred hhcCCCCCCCCCeEEEEecCCCceecccCCCCHHHHHHHH
Q 021976 221 EFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFV 260 (304)
Q Consensus 221 ~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi 260 (304)
++|++.+ .|++++= ....+.|..+.++|..|+
T Consensus 523 ~~~~v~~---vP~~~i~-----~~~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 523 DEYGIMS---VPAIVVD-----DQQVYFGKKTIEEMLELI 554 (555)
T ss_pred HhCCcee---cCEEEEC-----CEEEEeeCCCHHHHHHhh
Confidence 9999997 9998752 224577988999999987
No 133
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.82 E-value=1.5e-07 Score=68.09 Aligned_cols=105 Identities=24% Similarity=0.358 Sum_probs=83.3
Q ss_pred CCcEEcChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHH-HHhhC--CcEEEEEeCc-----ccHHHHHhCCC--
Q 021976 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAA-KMLKG--EADLVMVDAY-----LEKDLAKEYNI-- 125 (304)
Q Consensus 56 ~~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~-~~~~~--~~~~~~vd~~-----~~~~~~~~~~v-- 125 (304)
...+.|+.-+|++++.+.+.+||.|=... |--+-+..|.++| +..+. ++.++.|.+. +|.+++++|++
T Consensus 4 ~G~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 4 KGCVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TTSEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred CceeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 46788999999999999999999997765 6667788999999 44433 8999999875 57899999999
Q ss_pred ccccEEEEEe-CCeEEEEe--eCCCCHHHHHHHHHHHhCC
Q 021976 126 LAYPTLYLFV-AGVRQFQF--FGERTRDVISAWVREKMTL 162 (304)
Q Consensus 126 ~~~Pt~~~~~-~g~~~~~~--~g~~~~~~l~~~i~~~~~~ 162 (304)
..+|.+++|. +.+.+.+| .|+.+.+.|.+|++++++.
T Consensus 82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~~ 121 (126)
T PF07912_consen 82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTGL 121 (126)
T ss_dssp CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS-
T ss_pred ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCCe
Confidence 5689999999 44678888 8999999999999998754
No 134
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.82 E-value=3.7e-08 Score=73.86 Aligned_cols=69 Identities=25% Similarity=0.516 Sum_probs=59.4
Q ss_pred CCCcEEEEEEcC-CChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc---------------------cHHHHHhCCCc--
Q 021976 72 KNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------EKDLAKEYNIL-- 126 (304)
Q Consensus 72 ~~~~~lv~f~a~-wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~v~-- 126 (304)
.+++++|.||++ ||++|+...+.+.++.++++. ++.++.|..+. +..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 679999999999 999999999999999999987 78898888753 34678889998
Q ss_pred ----cccEEEEEe-CCeEE
Q 021976 127 ----AYPTLYLFV-AGVRQ 140 (304)
Q Consensus 127 ----~~Pt~~~~~-~g~~~ 140 (304)
..|++++++ +|++.
T Consensus 104 ~~~~~~p~~~lid~~g~I~ 122 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIR 122 (124)
T ss_dssp TTSEESEEEEEEETTSBEE
T ss_pred cCCceEeEEEEECCCCEEE
Confidence 899999998 66543
No 135
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.81 E-value=6.6e-08 Score=77.09 Aligned_cols=88 Identities=17% Similarity=0.315 Sum_probs=68.3
Q ss_pred CCCcEEEEEE-cCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc----------------------------cHHHHH
Q 021976 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK 121 (304)
Q Consensus 72 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 121 (304)
.+++++|+|| ++||++|....+.+.++++++.+ ++.++.|.++. +..+++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 4689999999 89999999999999999999975 67777777543 224567
Q ss_pred hCCCc------cccEEEEEe-CCeEEEEeeCC----CCHHHHHHHHHHH
Q 021976 122 EYNIL------AYPTLYLFV-AGVRQFQFFGE----RTRDVISAWVREK 159 (304)
Q Consensus 122 ~~~v~------~~Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~i~~~ 159 (304)
+||+. ..|++++++ +|++...+.+. .+.+++.+.|++.
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 78876 567898998 88887777543 4567777777654
No 136
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.80 E-value=5.6e-08 Score=76.94 Aligned_cols=85 Identities=11% Similarity=0.159 Sum_probs=65.1
Q ss_pred CCCcEEEEEEcCC-ChhhhhhHHHHHHHHHHhhCCcEEEEEeCcc-----------------------cHHHHHhCCCcc
Q 021976 72 KNRNVMVMFYANW-CYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-----------------------EKDLAKEYNILA 127 (304)
Q Consensus 72 ~~~~~lv~f~a~w-C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~~v~~ 127 (304)
.+++++|+||++| |++|..+.|.+.+++++++ ++.++.|+++. ...+++.||+..
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~ 121 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAI 121 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCee
Confidence 5789999999999 9999999999999999985 67788777642 236788899887
Q ss_pred cc---------EEEEEe-CCeEEEEeeCC-----CCHHHHHHHHH
Q 021976 128 YP---------TLYLFV-AGVRQFQFFGE-----RTRDVISAWVR 157 (304)
Q Consensus 128 ~P---------t~~~~~-~g~~~~~~~g~-----~~~~~l~~~i~ 157 (304)
.| +.++++ +|++...+.+. .+.+++.+.++
T Consensus 122 ~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 122 AEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred cccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 77 888887 88777666432 34555655553
No 137
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=4.1e-08 Score=73.98 Aligned_cols=93 Identities=12% Similarity=0.283 Sum_probs=75.0
Q ss_pred cCCHHHHH-HhhccCCeEEEEEecCCCCcc---HHHHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEe
Q 021976 167 ITTTDEAE-RILTVESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLH 238 (304)
Q Consensus 167 l~~~~~~~-~~~~~~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~P~lv~~~ 238 (304)
+.+.++++ ..++++.+++|.|+++||+|+ ...+.+++ ++.+++.|+.+ ++.+++++|+|+. .|++++|+
T Consensus 47 ~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~a---vPtvlvfk 123 (150)
T KOG0910|consen 47 VQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISA---VPTVLVFK 123 (150)
T ss_pred ccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceee---eeEEEEEE
Confidence 34555554 555778899999999999994 55566665 67889998865 6779999999998 99999999
Q ss_pred cCCCceecccCCCCHHHHHHHHhcC
Q 021976 239 LEAGKATPFRHQFTRLAIANFVTHT 263 (304)
Q Consensus 239 ~~~~~~~~y~g~~~~~~i~~fi~~~ 263 (304)
+|+ ....+-|-.+.+.|..||++.
T Consensus 124 nGe-~~d~~vG~~~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 124 NGE-KVDRFVGAVPKEQLRSLIKKF 147 (150)
T ss_pred CCE-EeeeecccCCHHHHHHHHHHH
Confidence 886 556888889999999999863
No 138
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.80 E-value=7.2e-08 Score=77.77 Aligned_cols=86 Identities=17% Similarity=0.232 Sum_probs=66.5
Q ss_pred CCCcEEEEEE-cCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc-------------------------cHHHHHhCC
Q 021976 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------------EKDLAKEYN 124 (304)
Q Consensus 72 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------------------------~~~~~~~~~ 124 (304)
.+++++|.|| ++||++|..+.+.+.++.+++++ ++.++.|.++. +..+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 5789999999 99999999999999999999875 67777776542 235778889
Q ss_pred Cc------cccEEEEEe-CCeEEEEeeC----CCCHHHHHHHHH
Q 021976 125 IL------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVR 157 (304)
Q Consensus 125 v~------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~ 157 (304)
+. ..|+.++++ +|++...+.+ ....+++.+.|+
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 86 469888887 8877666533 246777777664
No 139
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.78 E-value=7.3e-08 Score=74.70 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=35.1
Q ss_pred CCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc
Q 021976 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL 115 (304)
Q Consensus 73 ~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~ 115 (304)
+..+++.||++||++|+.+.|.+.++.+++++ ++.++.|+.+.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPES 67 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCC
Confidence 34455555699999999999999999999965 78888888654
No 140
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=6.6e-08 Score=77.30 Aligned_cols=165 Identities=15% Similarity=0.223 Sum_probs=109.7
Q ss_pred hcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEEEEeeCCCCH
Q 021976 70 MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTR 149 (304)
Q Consensus 70 ~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~ 149 (304)
..+++..++.|||+||.+|+++...++.+++..+ ++.+++++.++.++++..+.+...|....+..|+.+.+..|....
T Consensus 14 ~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~-~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~ 92 (227)
T KOG0911|consen 14 DQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK-NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPP 92 (227)
T ss_pred HhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh-hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcH
Confidence 3478899999999999999999999999999984 899999999999999999999999999999988888888876554
Q ss_pred HHHHH---HHHHHh---CC-CceecC-----CHHHHHHhhcc--CCeEEEEEec-----CCCCccHHHHHHHhccCCcee
Q 021976 150 DVISA---WVREKM---TL-GTYSIT-----TTDEAERILTV--ESKLVLGFLH-----DLEGMESEELAAASKLHSDVN 210 (304)
Q Consensus 150 ~~l~~---~i~~~~---~~-~~~~l~-----~~~~~~~~~~~--~~~~~v~f~~-----~~~~~~~~~~~~~a~~~~~~~ 210 (304)
..... +..... .. ....+. ..+.++..+.. +...++.|.. |.|+-..+.+..+.....++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~ 172 (227)
T KOG0911|consen 93 FLVSKVEKLAESGSASLGMGLSTTIRETQTTNETDLDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYT 172 (227)
T ss_pred HHHHHHHHhhhhcccccCCCCCcchhcccccchhhHHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCee
Confidence 43332 232222 00 111110 00012222221 2223334543 455556666666655555565
Q ss_pred EE-EecCHHHHhhcCCCC-CCCCCeEE
Q 021976 211 FY-QTTSADVAEFFHIHP-KSKRPALI 235 (304)
Q Consensus 211 f~-~~~~~~l~~~~~i~~-~~~~P~lv 235 (304)
++ ..+++++.+..+.-+ ++.+|.++
T Consensus 173 ~fdIL~DeelRqglK~fSdWPTfPQly 199 (227)
T KOG0911|consen 173 IFDVLTDEELRQGLKEFSDWPTFPQLY 199 (227)
T ss_pred EEeccCCHHHHHHhhhhcCCCCcccee
Confidence 44 458888887777543 45566544
No 141
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.78 E-value=9.7e-08 Score=70.66 Aligned_cols=94 Identities=11% Similarity=0.159 Sum_probs=66.5
Q ss_pred CceecCCHHHHHHhhccCC-eEEEEEecCCCCc--cH-----HHHHH-Hhcc--CCceeEEE---ecCHHHHhhcCCCCC
Q 021976 163 GTYSITTTDEAERILTVES-KLVLGFLHDLEGM--ES-----EELAA-ASKL--HSDVNFYQ---TTSADVAEFFHIHPK 228 (304)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~-~~~v~f~~~~~~~--~~-----~~~~~-~a~~--~~~~~f~~---~~~~~l~~~~~i~~~ 228 (304)
.+..+ +.+++++.+.+++ ++++.|.+.||+| +. +.+.+ ++.. .+++.|+. ..+++++++|+|.+
T Consensus 10 ~v~~l-t~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~- 87 (120)
T cd03065 10 RVIDL-NEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE- 87 (120)
T ss_pred ceeeC-ChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc-
Confidence 34455 4577777776665 4555455566655 32 12233 3344 66777775 47899999999997
Q ss_pred CCCCeEEEEecCCCceecccCCCCHHHHHHHHhc
Q 021976 229 SKRPALIFLHLEAGKATPFRHQFTRLAIANFVTH 262 (304)
Q Consensus 229 ~~~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi~~ 262 (304)
+||+++|+++. ...|.|..+.+.|.+||.+
T Consensus 88 --iPTl~lfk~G~--~v~~~G~~~~~~l~~~l~~ 117 (120)
T cd03065 88 --EDSIYVFKDDE--VIEYDGEFAADTLVEFLLD 117 (120)
T ss_pred --ccEEEEEECCE--EEEeeCCCCHHHHHHHHHH
Confidence 99999999774 4459999999999999985
No 142
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.77 E-value=9.7e-08 Score=74.59 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=64.0
Q ss_pred CCCcEEEEEEcC-CChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc---------------------cHHHHHhCCCccc
Q 021976 72 KNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------EKDLAKEYNILAY 128 (304)
Q Consensus 72 ~~~~~lv~f~a~-wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~v~~~ 128 (304)
++++++|.||++ ||+.|....+.+.++++++++ ++.++.|+.+. +..+.+.||+...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 578999999986 688899999999999999876 68888887643 3356788887654
Q ss_pred ------------cEEEEEe-CCeEEEEeeCCCCHHHHH
Q 021976 129 ------------PTLYLFV-AGVRQFQFFGERTRDVIS 153 (304)
Q Consensus 129 ------------Pt~~~~~-~g~~~~~~~g~~~~~~l~ 153 (304)
|+.++++ +|+....|.|....+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~ 146 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHD 146 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCCcchhHH
Confidence 6677886 898889999865555533
No 143
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.77 E-value=7e-08 Score=77.05 Aligned_cols=118 Identities=9% Similarity=0.070 Sum_probs=78.5
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc--------c---HHHHH-hCCCccccEEEEEe-CC
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL--------E---KDLAK-EYNILAYPTLYLFV-AG 137 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~--------~---~~~~~-~~~v~~~Pt~~~~~-~g 137 (304)
.++++||.|||+||++|+ ..|.++++.++|++ ++.++.+.|.+ . .++++ ++|+. +|.+-=.+ +|
T Consensus 24 ~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-Fpv~~k~dvnG 101 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-FPMFSKIEVNG 101 (183)
T ss_pred CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-ceeEEEEccCC
Confidence 579999999999999997 58899999999986 79999999842 1 34565 57764 56443333 44
Q ss_pred eEEEEeeCCCCHHHHHHHHHHHhCCCcee----------------c---CCHHHHHHhhccCCeEEEEEecCCCCccHHH
Q 021976 138 VRQFQFFGERTRDVISAWVREKMTLGTYS----------------I---TTTDEAERILTVESKLVLGFLHDLEGMESEE 198 (304)
Q Consensus 138 ~~~~~~~g~~~~~~l~~~i~~~~~~~~~~----------------l---~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~ 198 (304)
..+..+.+|+++..+..... + .-.=++.+|+-+.+-.+|..|.+...|....
T Consensus 102 ---------~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r~~~~~~p~~~~ 172 (183)
T PRK10606 102 ---------EGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQRFSPDMTPEDPI 172 (183)
T ss_pred ---------CCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEEECCCCCCCHHH
Confidence 24456788887766421100 0 0012455677666667778888877776533
Q ss_pred HH
Q 021976 199 LA 200 (304)
Q Consensus 199 ~~ 200 (304)
+.
T Consensus 173 i~ 174 (183)
T PRK10606 173 VM 174 (183)
T ss_pred HH
Confidence 33
No 144
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.76 E-value=1e-07 Score=69.73 Aligned_cols=94 Identities=16% Similarity=0.239 Sum_probs=69.5
Q ss_pred ceecCCHHHHHHhhc-cCCeEEEEEecCCCCcc---HHHHHHHh-ccCCceeEEEe---c--CHHHHhhcCCCCCCCCCe
Q 021976 164 TYSITTTDEAERILT-VESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQT---T--SADVAEFFHIHPKSKRPA 233 (304)
Q Consensus 164 ~~~l~~~~~~~~~~~-~~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~---~--~~~l~~~~~i~~~~~~P~ 233 (304)
+.+++ .++++..+. .+.+++|.|+++||.++ ...+.+++ .+.+.+.++.+ . +++++++|++++ +|+
T Consensus 2 v~~l~-~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~---~Pt 77 (109)
T cd03002 2 VYELT-PKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQG---FPT 77 (109)
T ss_pred eEEcc-hhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCc---CCE
Confidence 34553 455666654 45569999999999874 33455555 45555666543 3 678999999997 999
Q ss_pred EEEEecCC----CceecccCCCCHHHHHHHHh
Q 021976 234 LIFLHLEA----GKATPFRHQFTRLAIANFVT 261 (304)
Q Consensus 234 lv~~~~~~----~~~~~y~g~~~~~~i~~fi~ 261 (304)
+++|++++ .....|.|..+.++|.+||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 78 LKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 99999886 35788999999999999984
No 145
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.1e-07 Score=79.54 Aligned_cols=112 Identities=24% Similarity=0.315 Sum_probs=88.3
Q ss_pred cCCCcEEcChhcHHHHhcC-CC--cEEEEEEcC----CChhhhhhHHHHHHHHHHhhC--------CcEEEEEeCcccHH
Q 021976 54 YAKDVVSLNGKNFSEFMGK-NR--NVMVMFYAN----WCYWSKKLAPEFAAAAKMLKG--------EADLVMVDAYLEKD 118 (304)
Q Consensus 54 ~~~~v~~l~~~~~~~~~~~-~~--~~lv~f~a~----wC~~C~~~~~~~~~~~~~~~~--------~~~~~~vd~~~~~~ 118 (304)
++..|+.+++++|.+.+.. .+ ..+|.|.|. .|.-|+++..++.-+++.+.. ++.|..||.++.++
T Consensus 38 s~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~ 117 (331)
T KOG2603|consen 38 SESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ 117 (331)
T ss_pred CCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence 4579999999999999843 23 378888884 599999999999999998653 67899999999999
Q ss_pred HHHhCCCccccEEEEEe--CCe--EEEEe---eCCCCHHHHHHHHHHHhCCCce
Q 021976 119 LAKEYNILAYPTLYLFV--AGV--RQFQF---FGERTRDVISAWVREKMTLGTY 165 (304)
Q Consensus 119 ~~~~~~v~~~Pt~~~~~--~g~--~~~~~---~g~~~~~~l~~~i~~~~~~~~~ 165 (304)
..++++++..|++++|. .|+ ....+ +-...+|++.+|+.+.+...+.
T Consensus 118 ~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~ 171 (331)
T KOG2603|consen 118 VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNVR 171 (331)
T ss_pred HHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhheee
Confidence 99999999999999995 232 11122 2224489999999988765443
No 146
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.72 E-value=1.9e-07 Score=67.58 Aligned_cols=92 Identities=13% Similarity=0.144 Sum_probs=70.8
Q ss_pred eecCCHHHHHHhhcc-CCeEEEEEecCCCCcc---HHHHHHHh-ccCCceeEEE---ecCHHHHhhcCCCCCCCCCeEEE
Q 021976 165 YSITTTDEAERILTV-ESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQ---TTSADVAEFFHIHPKSKRPALIF 236 (304)
Q Consensus 165 ~~l~~~~~~~~~~~~-~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~---~~~~~l~~~~~i~~~~~~P~lv~ 236 (304)
.++ +.+++++.+.+ ..++++.|+.+||+++ ...+..++ .+.+++.++. ..+++++++|++++ +|++++
T Consensus 3 ~~l-~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~---~P~~~~ 78 (103)
T cd03001 3 VEL-TDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRG---FPTIKV 78 (103)
T ss_pred EEc-CHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCc---cCEEEE
Confidence 345 44667776644 4558889999999864 33455555 4556677664 36789999999996 999999
Q ss_pred EecCCCceecccCCCCHHHHHHHH
Q 021976 237 LHLEAGKATPFRHQFTRLAIANFV 260 (304)
Q Consensus 237 ~~~~~~~~~~y~g~~~~~~i~~fi 260 (304)
|+++......|+|..+.++|.+|+
T Consensus 79 ~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 79 FGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred ECCCCcceeecCCCCCHHHHHHHh
Confidence 998866788999999999999997
No 147
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.71 E-value=7.1e-08 Score=62.73 Aligned_cols=60 Identities=33% Similarity=0.634 Sum_probs=52.0
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHH---hCCCccccEEEEEeCC
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAK---EYNILAYPTLYLFVAG 137 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~---~~~v~~~Pt~~~~~~g 137 (304)
++.||++||++|++..+.+.++ +....++.+..+|++......+ .+++.++|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 4444489999999998877665 8899999999999876
No 148
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.68 E-value=1.7e-07 Score=72.16 Aligned_cols=74 Identities=12% Similarity=0.200 Sum_probs=59.5
Q ss_pred CCCcEEEEEEcCC-ChhhhhhHHHHHHHHHHhhCCcEEEEEeCcc----------------------c-HHHHHhCCCcc
Q 021976 72 KNRNVMVMFYANW-CYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----------------------E-KDLAKEYNILA 127 (304)
Q Consensus 72 ~~~~~lv~f~a~w-C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~----------------------~-~~~~~~~~v~~ 127 (304)
.+++++|+||++| |++|+..+|.+.+++++++ ++.++.|+.+. . ..+++.||+..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 5789999999999 6999999999999999986 78888888642 1 45667788753
Q ss_pred ------ccEEEEEe-CCeEEEEeeCC
Q 021976 128 ------YPTLYLFV-AGVRQFQFFGE 146 (304)
Q Consensus 128 ------~Pt~~~~~-~g~~~~~~~g~ 146 (304)
.|+.++++ +|++...+.|.
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~~~~ 129 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVELVP 129 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEEECC
Confidence 68888887 89877777654
No 149
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.67 E-value=2.8e-07 Score=75.66 Aligned_cols=83 Identities=17% Similarity=0.194 Sum_probs=68.9
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCc-----------ccHHHHHhCCCccccEEEEEe-CC-e
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-----------LEKDLAKEYNILAYPTLYLFV-AG-V 138 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-----------~~~~~~~~~~v~~~Pt~~~~~-~g-~ 138 (304)
.++.-|+.||.+.|+.|+++.|.+..+++++ ++.+..|+.| .+..+++++||..+|++++.. ++ +
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y--g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY--GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh--CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence 3678899999999999999999999999999 4777777776 457899999999999999998 44 3
Q ss_pred EEEEeeCCCCHHHHHHHH
Q 021976 139 RQFQFFGERTRDVISAWV 156 (304)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i 156 (304)
....-.|..+.++|.+-|
T Consensus 197 ~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 197 WYPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEEeeecCCHHHHHHhh
Confidence 444456999999887643
No 150
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.67 E-value=2.8e-07 Score=66.37 Aligned_cols=90 Identities=18% Similarity=0.260 Sum_probs=71.0
Q ss_pred HHHHHHhhccCCeEEEEEecCCCCccH---HHHHHHh-ccCC--ceeEEE---ecCHHHHhhcCCCCCCCCCeEEEEecC
Q 021976 170 TDEAERILTVESKLVLGFLHDLEGMES---EELAAAS-KLHS--DVNFYQ---TTSADVAEFFHIHPKSKRPALIFLHLE 240 (304)
Q Consensus 170 ~~~~~~~~~~~~~~~v~f~~~~~~~~~---~~~~~~a-~~~~--~~~f~~---~~~~~l~~~~~i~~~~~~P~lv~~~~~ 240 (304)
.+++++.+.++.+++|.|+++||..+. ..+..++ .+.+ ++.++. ..+++++++|++.. .|++++|+.+
T Consensus 3 ~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~---~P~~~~~~~~ 79 (102)
T TIGR01126 3 ASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSG---FPTIKFFPKG 79 (102)
T ss_pred hhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCc---CCEEEEecCC
Confidence 456777777788899999999998753 3344444 3443 466664 46789999999996 9999999988
Q ss_pred CCceecccCCCCHHHHHHHHhcC
Q 021976 241 AGKATPFRHQFTRLAIANFVTHT 263 (304)
Q Consensus 241 ~~~~~~y~g~~~~~~i~~fi~~~ 263 (304)
+. ...|.|..+.+.|..||.++
T Consensus 80 ~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 80 KK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred Cc-ceeecCCCCHHHHHHHHHhc
Confidence 65 88999999999999999875
No 151
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.64 E-value=2.2e-07 Score=63.35 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=49.8
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHh-----CCCccccEEEEEeCCeEEEEeeCCCCHHH
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKE-----YNILAYPTLYLFVAGVRQFQFFGERTRDV 151 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~-----~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 151 (304)
++.||++||++|++..+.+.++ ++.+-.+|+++++..... +++.++|++ ++.+|..+. ..+..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~----~~~~~~ 70 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT----NPSAAQ 70 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec----CCCHHH
Confidence 5789999999999999988665 345667888877766555 389999997 577774332 344455
Q ss_pred HHHHHH
Q 021976 152 ISAWVR 157 (304)
Q Consensus 152 l~~~i~ 157 (304)
+.+.++
T Consensus 71 ~~~~l~ 76 (77)
T TIGR02200 71 VKAKLQ 76 (77)
T ss_pred HHHHhh
Confidence 655543
No 152
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.63 E-value=4.9e-07 Score=73.82 Aligned_cols=89 Identities=18% Similarity=0.216 Sum_probs=67.2
Q ss_pred CCCcEE-EEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc---------------------------cHHHHHh
Q 021976 72 KNRNVM-VMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKE 122 (304)
Q Consensus 72 ~~~~~l-v~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~~~~ 122 (304)
+++.++ +.||++||+.|..+.+.+.++++++++ ++.++.|+++. +..+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 456544 478999999999999999999999876 67777776542 3457788
Q ss_pred CCCc------cccEEEEEe-CCeEEEEe----eCCCCHHHHHHHHHHHh
Q 021976 123 YNIL------AYPTLYLFV-AGVRQFQF----FGERTRDVISAWVREKM 160 (304)
Q Consensus 123 ~~v~------~~Pt~~~~~-~g~~~~~~----~g~~~~~~l~~~i~~~~ 160 (304)
||+. .+|++++++ +|++.... .+.++.+++.+.+....
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 8884 589999997 78655443 34578888888887543
No 153
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.63 E-value=4.2e-07 Score=70.50 Aligned_cols=75 Identities=11% Similarity=0.329 Sum_probs=58.6
Q ss_pred CCcEEEEEE-cCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCc---------------------cc--HHHHHhCCCcc
Q 021976 73 NRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY---------------------LE--KDLAKEYNILA 127 (304)
Q Consensus 73 ~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~---------------------~~--~~~~~~~~v~~ 127 (304)
+++++|.|| ++||+.|....|.++++++++++ ++.++.|+.+ .+ ..+.+.||+..
T Consensus 28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~ 107 (149)
T cd03018 28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFD 107 (149)
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCcc
Confidence 378888887 99999999999999999999975 7888887653 23 56777888873
Q ss_pred ----c--cEEEEEe-CCeEEEEeeCCC
Q 021976 128 ----Y--PTLYLFV-AGVRQFQFFGER 147 (304)
Q Consensus 128 ----~--Pt~~~~~-~g~~~~~~~g~~ 147 (304)
. |++++++ +|+....+.|..
T Consensus 108 ~~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 108 EDLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred ccCCCccceEEEECCCCEEEEEEecCC
Confidence 3 3778887 898888887753
No 154
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.62 E-value=6.6e-07 Score=71.88 Aligned_cols=88 Identities=14% Similarity=0.185 Sum_probs=68.1
Q ss_pred CCCcEEEEEE-cCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc-------------------------cHHHHHhCC
Q 021976 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------------EKDLAKEYN 124 (304)
Q Consensus 72 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------------------------~~~~~~~~~ 124 (304)
.++++++.|| ++||+.|..+.+.+.+..+++++ ++.++.|+.+. +..+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 5678999999 99999999999999999999975 67777777542 346788999
Q ss_pred C----ccc--cEEEEEe-CCeEEEEeeC----CCCHHHHHHHHHHH
Q 021976 125 I----LAY--PTLYLFV-AGVRQFQFFG----ERTRDVISAWVREK 159 (304)
Q Consensus 125 v----~~~--Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~~ 159 (304)
+ .+. |+.++++ +|++...+.. .++.+++.+.+...
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 8 356 9999997 8876655432 36778888777543
No 155
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.62 E-value=2.9e-07 Score=77.64 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=78.7
Q ss_pred CCcEEcC-hhcHHHHhcC---CCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEE
Q 021976 56 KDVVSLN-GKNFSEFMGK---NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL 131 (304)
Q Consensus 56 ~~v~~l~-~~~~~~~~~~---~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 131 (304)
..|.+++ ++.|-+.+.+ +..++|.||.+.++.|+.+...+..+|.+|. .+.|.+|..+.-+ +..+|.+...||+
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-~vKFvkI~a~~~~-~~~~f~~~~LPtl 202 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-EVKFVKIRASKCP-ASENFPDKNLPTL 202 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-TSEEEEEEECGCC-TTTTS-TTC-SEE
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEEehhccC-cccCCcccCCCEE
Confidence 5678885 4778887743 3468999999999999999999999999999 7999999987765 7789999999999
Q ss_pred EEEeCCeEEEEeeC-------CCCHHHHHHHHHHHh
Q 021976 132 YLFVAGVRQFQFFG-------ERTRDVISAWVREKM 160 (304)
Q Consensus 132 ~~~~~g~~~~~~~g-------~~~~~~l~~~i~~~~ 160 (304)
++|++|..+..+.| ..+.++|..+|.++-
T Consensus 203 lvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 203 LVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp EEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred EEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence 99999988877754 356678888887664
No 156
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.61 E-value=5.8e-07 Score=61.16 Aligned_cols=73 Identities=16% Similarity=0.399 Sum_probs=57.2
Q ss_pred EEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEEEEeeC-CCCHHHHHHHH
Q 021976 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFG-ERTRDVISAWV 156 (304)
Q Consensus 78 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g-~~~~~~l~~~i 156 (304)
|.+++++|+.|......+++++..++ +.+-.+|..+.+++ .+|||.++|++++ ||+ ..+.| ..+.+++.+||
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~--~~~~G~~p~~~el~~~l 75 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK--VVFVGRVPSKEELKELL 75 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE--EEEESS--HHHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE--EEEEecCCCHHHHHHHh
Confidence 34478889999999999999999884 67777777666666 9999999999965 784 46788 78888998887
Q ss_pred H
Q 021976 157 R 157 (304)
Q Consensus 157 ~ 157 (304)
+
T Consensus 76 ~ 76 (76)
T PF13192_consen 76 E 76 (76)
T ss_dssp H
T ss_pred C
Confidence 4
No 157
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.59 E-value=4.4e-07 Score=69.54 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=61.3
Q ss_pred CCCcEEEEEE-cCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc----------------------cHHHHHhCCCcc
Q 021976 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------EKDLAKEYNILA 127 (304)
Q Consensus 72 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------~~~~~~~~~v~~ 127 (304)
.+++++|.|| +.||+.|....|.+.+++++++. ++.++.|..+. +..+.+.||+..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 6889999999 78999999999999999999854 67788777642 235677788776
Q ss_pred cc---------EEEEEe-CCeEEEEeeCCCC
Q 021976 128 YP---------TLYLFV-AGVRQFQFFGERT 148 (304)
Q Consensus 128 ~P---------t~~~~~-~g~~~~~~~g~~~ 148 (304)
.| ++++++ +|+.+..+.|...
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 65 677777 6888888888654
No 158
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.59 E-value=8.1e-07 Score=64.02 Aligned_cols=91 Identities=10% Similarity=0.123 Sum_probs=67.2
Q ss_pred ceecCCHHHHHHhhccCCeEEEEEecCCCCcc---HHHHHHHhc-cC-CceeEEE---ecCHHHHhhcCCCCCCCCCeEE
Q 021976 164 TYSITTTDEAERILTVESKLVLGFLHDLEGME---SEELAAASK-LH-SDVNFYQ---TTSADVAEFFHIHPKSKRPALI 235 (304)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~v~f~~~~~~~~---~~~~~~~a~-~~-~~~~f~~---~~~~~l~~~~~i~~~~~~P~lv 235 (304)
+.++ +.+++++.++. .++|.|+.+||.++ ...+..++. .. .++.++. ..+++++++|++++ +|+++
T Consensus 3 v~~l-~~~~f~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~---~Pt~~ 76 (101)
T cd02994 3 VVEL-TDSNWTLVLEG--EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTA---LPTIY 76 (101)
T ss_pred eEEc-ChhhHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcc---cCEEE
Confidence 4556 45677777743 37899999999874 334555553 22 2455554 46789999999997 99999
Q ss_pred EEecCCCceecccCCCCHHHHHHHHhc
Q 021976 236 FLHLEAGKATPFRHQFTRLAIANFVTH 262 (304)
Q Consensus 236 ~~~~~~~~~~~y~g~~~~~~i~~fi~~ 262 (304)
+++.+ ....|.|..+.++|.+||.+
T Consensus 77 ~~~~g--~~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 77 HAKDG--VFRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EeCCC--CEEEecCCCCHHHHHHHHhC
Confidence 99766 35789999999999999874
No 159
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.58 E-value=2.7e-07 Score=70.96 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=37.9
Q ss_pred CCCcEEEEEEcCCChh-hhhhHHHHHHHHHHhhC----CcEEEEEeCc
Q 021976 72 KNRNVMVMFYANWCYW-SKKLAPEFAAAAKMLKG----EADLVMVDAY 114 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~-C~~~~~~~~~~~~~~~~----~~~~~~vd~~ 114 (304)
++++++|.||++||++ |....+.+.++++++++ ++.++.|+.+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 6789999999999998 99999999999999875 3888888764
No 160
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.58 E-value=6.9e-07 Score=63.90 Aligned_cols=89 Identities=12% Similarity=0.229 Sum_probs=70.8
Q ss_pred CHHHHHHhhccCCeEEEEEecCCCCccH---HHHHHHh-cc--CCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEec
Q 021976 169 TTDEAERILTVESKLVLGFLHDLEGMES---EELAAAS-KL--HSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHL 239 (304)
Q Consensus 169 ~~~~~~~~~~~~~~~~v~f~~~~~~~~~---~~~~~~a-~~--~~~~~f~~~---~~~~l~~~~~i~~~~~~P~lv~~~~ 239 (304)
+..++.+.+.+.+.++|.|+++||+++. ..+..++ .+ ...+.|+.+ .+.+++++|++++ .|++++|++
T Consensus 4 ~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~---~Pt~~~~~~ 80 (101)
T cd02961 4 TDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRG---YPTIKLFPN 80 (101)
T ss_pred cHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCC---CCEEEEEcC
Confidence 4567888888887999999999998643 3344555 45 467777754 4679999999996 999999998
Q ss_pred CCCceecccCCCCHHHHHHHH
Q 021976 240 EAGKATPFRHQFTRLAIANFV 260 (304)
Q Consensus 240 ~~~~~~~y~g~~~~~~i~~fi 260 (304)
++.....|.|..+.++|.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 866888999999999999885
No 161
>PRK15000 peroxidase; Provisional
Probab=98.57 E-value=9.6e-07 Score=71.86 Aligned_cols=87 Identities=16% Similarity=0.279 Sum_probs=68.7
Q ss_pred CCCcEEEEEEcC-CChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc----------------------------cHHHHH
Q 021976 72 KNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK 121 (304)
Q Consensus 72 ~~~~~lv~f~a~-wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 121 (304)
+++.+++.||+. ||+.|..+.+.+.+.++++++ ++.++.|.++. +..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 578999999995 999999999999999999976 77788777652 224677
Q ss_pred hCCCc------cccEEEEEe-CCeEEEEeeCC----CCHHHHHHHHHH
Q 021976 122 EYNIL------AYPTLYLFV-AGVRQFQFFGE----RTRDVISAWVRE 158 (304)
Q Consensus 122 ~~~v~------~~Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~i~~ 158 (304)
.||+. ..|+.++++ +|++...+.|. ++.+++.+.++.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 78887 689999998 88777666553 567777777754
No 162
>PHA02278 thioredoxin-like protein
Probab=98.56 E-value=9.1e-07 Score=63.84 Aligned_cols=88 Identities=10% Similarity=0.130 Sum_probs=66.3
Q ss_pred CCHHHHHHhhccCCeEEEEEecCCCCcc---HHHHHHHh-ccCCceeEEEe--c-----CHHHHhhcCCCCCCCCCeEEE
Q 021976 168 TTTDEAERILTVESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQT--T-----SADVAEFFHIHPKSKRPALIF 236 (304)
Q Consensus 168 ~~~~~~~~~~~~~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~--~-----~~~l~~~~~i~~~~~~P~lv~ 236 (304)
.+.+++++.++++++++|.|+++||+++ .+.+..++ ....+..|..+ . .++++++|+|.+ .|++++
T Consensus 2 ~~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~---iPT~i~ 78 (103)
T PHA02278 2 NSLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMS---TPVLIG 78 (103)
T ss_pred CCHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCcc---ccEEEE
Confidence 4577888888888999999999999985 34455555 33344444432 2 268999999997 999999
Q ss_pred EecCCCceecccCCCCHHHHHHH
Q 021976 237 LHLEAGKATPFRHQFTRLAIANF 259 (304)
Q Consensus 237 ~~~~~~~~~~y~g~~~~~~i~~f 259 (304)
|+++. ......|..+.+.|.+|
T Consensus 79 fk~G~-~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 79 YKDGQ-LVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EECCE-EEEEEeCCCCHHHHHhh
Confidence 99874 66678888888888876
No 163
>PRK09381 trxA thioredoxin; Provisional
Probab=98.53 E-value=1.4e-06 Score=63.69 Aligned_cols=97 Identities=12% Similarity=0.207 Sum_probs=71.7
Q ss_pred CCceecCCHHHHH-HhhccCCeEEEEEecCCCCccH---HHHHHHh-ccCCceeEEE---ecCHHHHhhcCCCCCCCCCe
Q 021976 162 LGTYSITTTDEAE-RILTVESKLVLGFLHDLEGMES---EELAAAS-KLHSDVNFYQ---TTSADVAEFFHIHPKSKRPA 233 (304)
Q Consensus 162 ~~~~~l~~~~~~~-~~~~~~~~~~v~f~~~~~~~~~---~~~~~~a-~~~~~~~f~~---~~~~~l~~~~~i~~~~~~P~ 233 (304)
..+.+++. ++++ ..++.+.++++.|+.+||.++. ..+..++ .+.+++.++. ..++.++++|++.. +|+
T Consensus 3 ~~v~~~~~-~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~---~Pt 78 (109)
T PRK09381 3 DKIIHLTD-DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG---IPT 78 (109)
T ss_pred CcceeeCh-hhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCc---CCE
Confidence 45666655 4555 4566678899999999998754 4455555 4556666554 46788999999997 999
Q ss_pred EEEEecCCCceecccCCCCHHHHHHHHhcC
Q 021976 234 LIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (304)
Q Consensus 234 lv~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 263 (304)
+++|+.+. ....+.|..+.+.|..||..+
T Consensus 79 ~~~~~~G~-~~~~~~G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 79 LLLFKNGE-VAATKVGALSKGQLKEFLDAN 107 (109)
T ss_pred EEEEeCCe-EEEEecCCCCHHHHHHHHHHh
Confidence 99997553 566788988999999999865
No 164
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.53 E-value=1.1e-06 Score=64.33 Aligned_cols=93 Identities=11% Similarity=0.173 Sum_probs=67.2
Q ss_pred ceecCCHHHHHHhhc---cCCeEEEEEecCCCCcc---HHHHHHHh-ccCC-ceeEEEe---c-CHHHHh-hcCCCCCCC
Q 021976 164 TYSITTTDEAERILT---VESKLVLGFLHDLEGME---SEELAAAS-KLHS-DVNFYQT---T-SADVAE-FFHIHPKSK 230 (304)
Q Consensus 164 ~~~l~~~~~~~~~~~---~~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~-~~~f~~~---~-~~~l~~-~~~i~~~~~ 230 (304)
+.++ +.++++.+.. ++.+++|.|+.+||.++ ...+..++ .+.+ .+.++.+ . +..++. .++++.
T Consensus 3 v~~~-~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~--- 78 (109)
T cd02993 3 VVTL-SRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKS--- 78 (109)
T ss_pred ceec-cHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCc---
Confidence 4455 4456766663 46789999999999874 34455555 3444 3666643 2 356775 599986
Q ss_pred CCeEEEEecCCCceecccCC-CCHHHHHHHH
Q 021976 231 RPALIFLHLEAGKATPFRHQ-FTRLAIANFV 260 (304)
Q Consensus 231 ~P~lv~~~~~~~~~~~y~g~-~~~~~i~~fi 260 (304)
+|++++|+++......|+|+ ++.++|..||
T Consensus 79 ~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 79 FPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CCEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 99999999887788999995 8999999986
No 165
>PRK10996 thioredoxin 2; Provisional
Probab=98.52 E-value=1.3e-06 Score=66.83 Aligned_cols=91 Identities=11% Similarity=0.240 Sum_probs=71.8
Q ss_pred CHHHHHHhhccCCeEEEEEecCCCCccH---HHHHHHh-ccCCceeEEE---ecCHHHHhhcCCCCCCCCCeEEEEecCC
Q 021976 169 TTDEAERILTVESKLVLGFLHDLEGMES---EELAAAS-KLHSDVNFYQ---TTSADVAEFFHIHPKSKRPALIFLHLEA 241 (304)
Q Consensus 169 ~~~~~~~~~~~~~~~~v~f~~~~~~~~~---~~~~~~a-~~~~~~~f~~---~~~~~l~~~~~i~~~~~~P~lv~~~~~~ 241 (304)
+.++++..+++++.++|.|+.+||++.. ..+..++ ...+++.|.. ..+++++++|++.+ +|++++|+++
T Consensus 41 ~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~---~Ptlii~~~G- 116 (139)
T PRK10996 41 TGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRS---IPTIMIFKNG- 116 (139)
T ss_pred CHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCc---cCEEEEEECC-
Confidence 5677888888888999999999999743 3455555 4555666654 36789999999996 9999999854
Q ss_pred CceecccCCCCHHHHHHHHhcC
Q 021976 242 GKATPFRHQFTRLAIANFVTHT 263 (304)
Q Consensus 242 ~~~~~y~g~~~~~~i~~fi~~~ 263 (304)
+....+.|..+.+.|.+|+.+.
T Consensus 117 ~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 117 QVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEEEEEcCCCCHHHHHHHHHHh
Confidence 3666788999999999999864
No 166
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.50 E-value=1.3e-06 Score=63.13 Aligned_cols=93 Identities=14% Similarity=0.239 Sum_probs=66.9
Q ss_pred ceecCCHHHHHHhhcc-CCeEEEEEecCCCCcc---HHHHHHHh-ccCC--ceeEEEe--cCHHHHhhcCCCCCCCCCeE
Q 021976 164 TYSITTTDEAERILTV-ESKLVLGFLHDLEGME---SEELAAAS-KLHS--DVNFYQT--TSADVAEFFHIHPKSKRPAL 234 (304)
Q Consensus 164 ~~~l~~~~~~~~~~~~-~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~--~~~f~~~--~~~~l~~~~~i~~~~~~P~l 234 (304)
+..++ .+++++.+.+ +..++|.|+.+||+++ ...+..++ .+.. ++.++.. ...+++..+++.+ +|++
T Consensus 2 v~~l~-~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~---~Pt~ 77 (104)
T cd02995 2 VKVVV-GKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDG---FPTI 77 (104)
T ss_pred eEEEc-hhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCC---CCEE
Confidence 44553 4566666544 5788999999999874 34455555 3333 4666644 3346888899875 9999
Q ss_pred EEEecCC-CceecccCCCCHHHHHHHH
Q 021976 235 IFLHLEA-GKATPFRHQFTRLAIANFV 260 (304)
Q Consensus 235 v~~~~~~-~~~~~y~g~~~~~~i~~fi 260 (304)
++|+.+. .....|.|..+.++|.+||
T Consensus 78 ~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 78 LFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 9998876 4578899999999999996
No 167
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.49 E-value=1.3e-06 Score=62.91 Aligned_cols=90 Identities=14% Similarity=0.253 Sum_probs=66.7
Q ss_pred eecCCHHHHHHhhccCCeEEEEEecCCCCccH---HHHHHHh-ccCC---ceeEEE---ecCHHHHhhcCCCCCCCCCeE
Q 021976 165 YSITTTDEAERILTVESKLVLGFLHDLEGMES---EELAAAS-KLHS---DVNFYQ---TTSADVAEFFHIHPKSKRPAL 234 (304)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~v~f~~~~~~~~~---~~~~~~a-~~~~---~~~f~~---~~~~~l~~~~~i~~~~~~P~l 234 (304)
..+ +.++++..+.+. .++|.|+++||.++. ..+..++ .+.+ ++.++. ..+.+++++|++.. +|++
T Consensus 3 ~~l-~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~---~Pt~ 77 (102)
T cd03005 3 LEL-TEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRG---YPTL 77 (102)
T ss_pred eEC-CHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCc---CCEE
Confidence 345 446677777655 588899999998743 3455554 3433 566664 35778999999996 9999
Q ss_pred EEEecCCCceecccCCCCHHHHHHHH
Q 021976 235 IFLHLEAGKATPFRHQFTRLAIANFV 260 (304)
Q Consensus 235 v~~~~~~~~~~~y~g~~~~~~i~~fi 260 (304)
++|+++. ....|.|..+.++|.+||
T Consensus 78 ~~~~~g~-~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 78 LLFKDGE-KVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEEeCCC-eeeEeeCCCCHHHHHhhC
Confidence 9997664 667899999999999986
No 168
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.49 E-value=2.1e-06 Score=70.15 Aligned_cols=85 Identities=14% Similarity=0.163 Sum_probs=64.3
Q ss_pred cEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc---------------------------cHHHHHhCCCc
Q 021976 75 NVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKEYNIL 126 (304)
Q Consensus 75 ~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~~~~~~v~ 126 (304)
.+|+.||++||+.|..+.+.+.++++++++ ++.++.|+++. +..+++.||+.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 456789999999999999999999999976 78888887653 23578888875
Q ss_pred ----c----ccEEEEEe-CCeEEEEeeC----CCCHHHHHHHHHHH
Q 021976 127 ----A----YPTLYLFV-AGVRQFQFFG----ERTRDVISAWVREK 159 (304)
Q Consensus 127 ----~----~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~~ 159 (304)
+ .|+.++++ +|++...+.+ .++.+++.+.+...
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 2 34678887 8877666544 35677777777654
No 169
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.48 E-value=2.7e-06 Score=61.50 Aligned_cols=92 Identities=14% Similarity=0.183 Sum_probs=69.1
Q ss_pred ecCCHHHHHHhhccCCeEEEEEecCCCCccH---HHHHHHh-ccCC-ceeEEE--ecCHHHHhhcCCCCCCCCCeEEEEe
Q 021976 166 SITTTDEAERILTVESKLVLGFLHDLEGMES---EELAAAS-KLHS-DVNFYQ--TTSADVAEFFHIHPKSKRPALIFLH 238 (304)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~v~f~~~~~~~~~---~~~~~~a-~~~~-~~~f~~--~~~~~l~~~~~i~~~~~~P~lv~~~ 238 (304)
.+.+.++++.+++++.+++|.|+.+||+++. +.+..++ .+.+ .+.|.. ..+++++++|+++. .|++++|+
T Consensus 3 ~i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~~---~Pt~~~~~ 79 (102)
T cd02948 3 EINNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGKC---EPTFLFYK 79 (102)
T ss_pred EccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCCc---CcEEEEEE
Confidence 4678899999998899999999999999854 3444444 3432 345554 34779999999997 99999998
Q ss_pred cCCCceecccCCCCHHHHHHHHhc
Q 021976 239 LEAGKATPFRHQFTRLAIANFVTH 262 (304)
Q Consensus 239 ~~~~~~~~y~g~~~~~~i~~fi~~ 262 (304)
++. ......| .+.+.+.++|.+
T Consensus 80 ~g~-~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 80 NGE-LVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred CCE-EEEEEec-CChHHHHHHHhh
Confidence 663 4455556 488999999874
No 170
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.48 E-value=1.1e-06 Score=63.82 Aligned_cols=88 Identities=11% Similarity=0.100 Sum_probs=67.1
Q ss_pred HHHHHhhccCCeEEEEEecCCCCccHHHHH------HHh-ccCCceeEEEe---c----CHHHHhhcCCCCCCCCCeEEE
Q 021976 171 DEAERILTVESKLVLGFLHDLEGMESEELA------AAS-KLHSDVNFYQT---T----SADVAEFFHIHPKSKRPALIF 236 (304)
Q Consensus 171 ~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~------~~a-~~~~~~~f~~~---~----~~~l~~~~~i~~~~~~P~lv~ 236 (304)
+.+.+.++++++++|.|+.+||.++..... .++ .+.+++.+..+ . .++++++|++++ +|++++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~---~Pti~~ 78 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFG---PPTYLF 78 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCC---CCEEEE
Confidence 456777788899999999999998654432 233 34446666543 2 468999999997 999999
Q ss_pred Eec-CCCceecccCCCCHHHHHHHHh
Q 021976 237 LHL-EAGKATPFRHQFTRLAIANFVT 261 (304)
Q Consensus 237 ~~~-~~~~~~~y~g~~~~~~i~~fi~ 261 (304)
|++ ++.....+.|..+.+.|.++|.
T Consensus 79 ~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 79 YGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred ECCCCCCCCcccccccCHHHHHHHhC
Confidence 997 5557788999999999998874
No 171
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.48 E-value=5.1e-07 Score=70.39 Aligned_cols=84 Identities=26% Similarity=0.279 Sum_probs=76.5
Q ss_pred ChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEEE
Q 021976 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQF 141 (304)
Q Consensus 62 ~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 141 (304)
+..+|-+...+..-+++.||-+.-..|+-+...++.+|+.+- ...|++||+...|-++.+++|...|++.+|++|+...
T Consensus 73 ~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~-eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~~D 151 (211)
T KOG1672|consen 73 SEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV-ETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKTVD 151 (211)
T ss_pred cHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcc-cceEEEEecccCceeeeeeeeeEeeeEEEEEcCEEEE
Confidence 367777777788889999999999999999999999999987 6899999999999999999999999999999998888
Q ss_pred EeeCC
Q 021976 142 QFFGE 146 (304)
Q Consensus 142 ~~~g~ 146 (304)
.+.|.
T Consensus 152 ~iVGF 156 (211)
T KOG1672|consen 152 YVVGF 156 (211)
T ss_pred EEeeH
Confidence 87763
No 172
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.47 E-value=1.6e-06 Score=61.76 Aligned_cols=78 Identities=9% Similarity=0.170 Sum_probs=60.1
Q ss_pred CCeEEEEEecCCCCccH---HHHHHHh-ccCCceeEEE---ecCHHHHhhcCCCCCCCCCeEEEEecCCCceecccCCCC
Q 021976 180 ESKLVLGFLHDLEGMES---EELAAAS-KLHSDVNFYQ---TTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFT 252 (304)
Q Consensus 180 ~~~~~v~f~~~~~~~~~---~~~~~~a-~~~~~~~f~~---~~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~~~ 252 (304)
+.+++|.|+.+||+++. ..+..++ .+.+.+.++. ..+++++++|++.+ +|++++|+.+ .....+.|..+
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~---~Pt~~~~~~g-~~~~~~~g~~~ 87 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQA---LPTVYLFAAG-QPVDGFQGAQP 87 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCC---CCEEEEEeCC-EEeeeecCCCC
Confidence 56899999999998854 3455555 4555555553 47889999999997 9999999854 35567999999
Q ss_pred HHHHHHHHh
Q 021976 253 RLAIANFVT 261 (304)
Q Consensus 253 ~~~i~~fi~ 261 (304)
.++|..||+
T Consensus 88 ~~~l~~~l~ 96 (96)
T cd02956 88 EEQLRQMLD 96 (96)
T ss_pred HHHHHHHhC
Confidence 999999974
No 173
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.46 E-value=8.6e-07 Score=63.79 Aligned_cols=77 Identities=10% Similarity=0.151 Sum_probs=59.6
Q ss_pred cCCeEEEEEecCCCCcc---HHHHHHHhccCCceeEEE---e-cCHHHHhhcCCCCCCCCCeEEEEecCCCceecccCCC
Q 021976 179 VESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQ---T-TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQF 251 (304)
Q Consensus 179 ~~~~~~v~f~~~~~~~~---~~~~~~~a~~~~~~~f~~---~-~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~~ 251 (304)
.+++++|.|+.+||+++ ...+.++++....+.+.. . .+++++++|++.+ +|++++|+.+ ....|.|..
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~---~PT~~lf~~g--~~~~~~G~~ 91 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVG---FPTILLFNST--PRVRYNGTR 91 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCee---cCEEEEEcCC--ceeEecCCC
Confidence 46789999999999874 445555553223444443 2 4678999999997 9999999877 678999999
Q ss_pred CHHHHHHHH
Q 021976 252 TRLAIANFV 260 (304)
Q Consensus 252 ~~~~i~~fi 260 (304)
+.++|.+||
T Consensus 92 ~~~~l~~f~ 100 (100)
T cd02999 92 TLDSLAAFY 100 (100)
T ss_pred CHHHHHhhC
Confidence 999999996
No 174
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.46 E-value=6.6e-07 Score=69.20 Aligned_cols=82 Identities=20% Similarity=0.353 Sum_probs=57.6
Q ss_pred EcChhcHHHHhcCCCcEEEEEEcCCChhhhhhHH-HH--HHHHHHhhCCcEEEEEeCcccHHHHHhC--------CCccc
Q 021976 60 SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAP-EF--AAAAKMLKGEADLVMVDAYLEKDLAKEY--------NILAY 128 (304)
Q Consensus 60 ~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~-~~--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~ 128 (304)
..+++.++.+-+++|+++|.++++||..|+.+.. .| .++++.+...+.-++||.++.+++-+.| |..|+
T Consensus 24 ~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGw 103 (163)
T PF03190_consen 24 PWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGW 103 (163)
T ss_dssp -SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---S
T ss_pred cCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCC
Confidence 3456778888889999999999999999999875 33 5577777767888999999999988887 78899
Q ss_pred cEEEEEe-CCeEEE
Q 021976 129 PTLYLFV-AGVRQF 141 (304)
Q Consensus 129 Pt~~~~~-~g~~~~ 141 (304)
|+.++.. +|+...
T Consensus 104 Pl~vfltPdg~p~~ 117 (163)
T PF03190_consen 104 PLTVFLTPDGKPFF 117 (163)
T ss_dssp SEEEEE-TTS-EEE
T ss_pred CceEEECCCCCeee
Confidence 9988887 776543
No 175
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.44 E-value=2e-06 Score=62.24 Aligned_cols=92 Identities=14% Similarity=0.235 Sum_probs=68.6
Q ss_pred eecCCHHHHHHhhccCC-eEEEEEecCCCCccH---HHHHHHh-ccC--CceeEEEe---c-CHHHHhhcCCCCCCCCCe
Q 021976 165 YSITTTDEAERILTVES-KLVLGFLHDLEGMES---EELAAAS-KLH--SDVNFYQT---T-SADVAEFFHIHPKSKRPA 233 (304)
Q Consensus 165 ~~l~~~~~~~~~~~~~~-~~~v~f~~~~~~~~~---~~~~~~a-~~~--~~~~f~~~---~-~~~l~~~~~i~~~~~~P~ 233 (304)
..++ .++++..+.+.+ .+++.|+++||.++. +.+..++ .+. .++.++.. . +++++++|++.+ +|+
T Consensus 3 ~~l~-~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~---~P~ 78 (105)
T cd02998 3 VELT-DSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSG---FPT 78 (105)
T ss_pred EEcc-hhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCC---cCE
Confidence 3443 356666665444 788899999998753 4455555 333 45666543 4 789999999996 999
Q ss_pred EEEEecCCCceecccCCCCHHHHHHHH
Q 021976 234 LIFLHLEAGKATPFRHQFTRLAIANFV 260 (304)
Q Consensus 234 lv~~~~~~~~~~~y~g~~~~~~i~~fi 260 (304)
+++|+.++.....|.|..+.+.|.+||
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 79 LKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEEeCCCCCccccCCccCHHHHHhhC
Confidence 999998877888999999999999986
No 176
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.44 E-value=3.5e-06 Score=62.13 Aligned_cols=89 Identities=8% Similarity=-0.010 Sum_probs=69.4
Q ss_pred cCCCcEEEEEEcC----CChhhhhhHHHHHHHHHHhhCCcEEEEEeCccc--HHHHHhCCCccccEEEEEe--C--CeEE
Q 021976 71 GKNRNVMVMFYAN----WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE--KDLAKEYNILAYPTLYLFV--A--GVRQ 140 (304)
Q Consensus 71 ~~~~~~lv~f~a~----wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~--~--g~~~ 140 (304)
++.|..+|++|++ ||..|+.... =+++.+.++.++.+...|++.. .+++..+++.++|++.++. + .+.+
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv 93 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIV 93 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEE
Confidence 6789999999999 8999976531 1334444445788888888644 5789999999999999983 3 3457
Q ss_pred EEeeCCCCHHHHHHHHHHHh
Q 021976 141 FQFFGERTRDVISAWVREKM 160 (304)
Q Consensus 141 ~~~~g~~~~~~l~~~i~~~~ 160 (304)
.+..|..+++++...++...
T Consensus 94 ~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 94 GRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 88999999999999988765
No 177
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.43 E-value=3.4e-06 Score=70.52 Aligned_cols=86 Identities=19% Similarity=0.247 Sum_probs=70.5
Q ss_pred CCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCccc-----------HHHHHhCCCccccEEEEEe-CCeEE
Q 021976 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-----------KDLAKEYNILAYPTLYLFV-AGVRQ 140 (304)
Q Consensus 73 ~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----------~~~~~~~~v~~~Pt~~~~~-~g~~~ 140 (304)
++.-|+.||.+.|+.|+++.|.++.++++|+ +.+..|+.|.. ...++++||..+|++++.. +++..
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 4678999999999999999999999999995 77777777644 5689999999999999998 43333
Q ss_pred -EEeeCCCCHHHHHHHHHHHh
Q 021976 141 -FQFFGERTRDVISAWVREKM 160 (304)
Q Consensus 141 -~~~~g~~~~~~l~~~i~~~~ 160 (304)
-.-.|..+.++|.+-+...+
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNVL 248 (256)
T ss_pred EEEeeccCCHHHHHHHHHHHH
Confidence 33469999999988776554
No 178
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.42 E-value=6e-06 Score=60.78 Aligned_cols=94 Identities=15% Similarity=0.183 Sum_probs=69.2
Q ss_pred CceecCCHHHHHHhhccCCeEEEEEecCCCCcc---HHHHHHHhccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEE
Q 021976 163 GTYSITTTDEAERILTVESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIF 236 (304)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~v~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~P~lv~ 236 (304)
.+..+++.+++.+.+.++..++|.|+.+||+++ ...+..+++...++.|..+ ..++++++|++.. .|++++
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~---vPt~l~ 81 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKV---LPTVIL 81 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCcc---CCEEEE
Confidence 466788888999999888899999999999874 3445555533345666643 6778999999997 999999
Q ss_pred EecCCCceeccc--------CCCCHHHHHHHH
Q 021976 237 LHLEAGKATPFR--------HQFTRLAIANFV 260 (304)
Q Consensus 237 ~~~~~~~~~~y~--------g~~~~~~i~~fi 260 (304)
|+.+. ....+. ++++.+++.+|+
T Consensus 82 fk~G~-~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 82 FKNGK-TVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EECCE-EEEEEECccccCCCCCCCHHHHHHHh
Confidence 99874 221221 346778888876
No 179
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.42 E-value=2.8e-06 Score=61.36 Aligned_cols=91 Identities=14% Similarity=0.219 Sum_probs=67.5
Q ss_pred eecCCHHHHHHhhccCCeEEEEEecCCCCccHHH---HHHHh-ccC--CceeEEE---ec--CHHHHhhcCCCCCCCCCe
Q 021976 165 YSITTTDEAERILTVESKLVLGFLHDLEGMESEE---LAAAS-KLH--SDVNFYQ---TT--SADVAEFFHIHPKSKRPA 233 (304)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~---~~~~a-~~~--~~~~f~~---~~--~~~l~~~~~i~~~~~~P~ 233 (304)
..+ +..+++..+++++.++|.|+++||.++... +..++ .+. +.+.++. .. ++++++++++.+ +|+
T Consensus 3 ~~l-~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~---~Pt 78 (104)
T cd02997 3 VHL-TDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKG---FPT 78 (104)
T ss_pred EEe-chHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCcc---ccE
Confidence 344 345778888888899999999999874333 34443 232 4455543 34 789999999986 999
Q ss_pred EEEEecCCCceecccCCCCHHHHHHHH
Q 021976 234 LIFLHLEAGKATPFRHQFTRLAIANFV 260 (304)
Q Consensus 234 lv~~~~~~~~~~~y~g~~~~~~i~~fi 260 (304)
+++|+.++ ....|.|..+.+.+.+|+
T Consensus 79 ~~~~~~g~-~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 79 FKYFENGK-FVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEEEeCCC-eeEEeCCCCCHHHHHhhC
Confidence 99998764 577899999999999985
No 180
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.40 E-value=4.4e-06 Score=59.84 Aligned_cols=90 Identities=12% Similarity=0.247 Sum_probs=67.6
Q ss_pred HHHHHHhhcc-CCeEEEEEecCCCCccH---HHHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecCC
Q 021976 170 TDEAERILTV-ESKLVLGFLHDLEGMES---EELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEA 241 (304)
Q Consensus 170 ~~~~~~~~~~-~~~~~v~f~~~~~~~~~---~~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~P~lv~~~~~~ 241 (304)
.+++...+.+ ...+++.|+.+||..+. +.+..++ .+.+++.|+.+ .+++++++|++.. .|++++|+.+.
T Consensus 3 ~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~---~P~~~~~~~g~ 79 (101)
T TIGR01068 3 DANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRS---IPTLLLFKNGK 79 (101)
T ss_pred HHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCc---CCEEEEEeCCc
Confidence 4566666655 44889999999998643 4455555 45556777654 6778999999997 99999997553
Q ss_pred CceecccCCCCHHHHHHHHhcC
Q 021976 242 GKATPFRHQFTRLAIANFVTHT 263 (304)
Q Consensus 242 ~~~~~y~g~~~~~~i~~fi~~~ 263 (304)
....+.|..+.+++.+|+.++
T Consensus 80 -~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 80 -EVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred -EeeeecCCCCHHHHHHHHHhh
Confidence 566778888999999999864
No 181
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.39 E-value=3.7e-06 Score=69.28 Aligned_cols=98 Identities=13% Similarity=0.102 Sum_probs=72.5
Q ss_pred CCceecCCHHHHHHhhcc-----CCeEEEEEecCCCCccH---HHHHHHh-ccCCceeEEE---ecCHHHHhhcCCCCCC
Q 021976 162 LGTYSITTTDEAERILTV-----ESKLVLGFLHDLEGMES---EELAAAS-KLHSDVNFYQ---TTSADVAEFFHIHPKS 229 (304)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~-----~~~~~v~f~~~~~~~~~---~~~~~~a-~~~~~~~f~~---~~~~~l~~~~~i~~~~ 229 (304)
..+.++ +.+++++.+.. ..+++|.|+.+||.++. +.+.+++ .+.+.+.++. ..+++++++|+|++
T Consensus 30 ~~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~-- 106 (224)
T PTZ00443 30 NALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKG-- 106 (224)
T ss_pred CCcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCc--
Confidence 345666 56678777643 46899999999999753 4455555 4666676664 46889999999997
Q ss_pred CCCeEEEEecCCCceecccCCCCHHHHHHHHhcCC
Q 021976 230 KRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTK 264 (304)
Q Consensus 230 ~~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi~~~~ 264 (304)
+|++++|+.+. ....+.|..+.++|.+|+.++.
T Consensus 107 -~PTl~~f~~G~-~v~~~~G~~s~e~L~~fi~~~~ 139 (224)
T PTZ00443 107 -YPTLLLFDKGK-MYQYEGGDRSTEKLAAFALGDF 139 (224)
T ss_pred -CCEEEEEECCE-EEEeeCCCCCHHHHHHHHHHHH
Confidence 99999999653 3334457889999999998754
No 182
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.38 E-value=8.7e-07 Score=61.46 Aligned_cols=58 Identities=21% Similarity=0.354 Sum_probs=44.7
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccH-----HHHHhCCCccccEEEEEeCCe
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----DLAKEYNILAYPTLYLFVAGV 138 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~g~ 138 (304)
++.|+++||++|++..+.+.++. .+..+.+..+|.+++. .+.+.+|+.++|+++ -+|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF--INGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE--ECCE
Confidence 47899999999999999999977 3334678888876543 266678999999984 3774
No 183
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.37 E-value=4e-06 Score=61.54 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=61.3
Q ss_pred cCCeEEEEEecCCCCcc---HHHHHHHh-ccCC-ceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecCCCceecccCC
Q 021976 179 VESKLVLGFLHDLEGME---SEELAAAS-KLHS-DVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQ 250 (304)
Q Consensus 179 ~~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~-~~~f~~~---~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~ 250 (304)
.+.+++|.|+.+||.++ .+.+.+++ .+.+ ++.++.+ .+++++++++|.+ +|++++|+.+ .....+.|.
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~---~Pt~~i~~~g-~~~~~~~G~ 98 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHS---VPAIVGIING-QVTFYHDSS 98 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCcc---CCEEEEEECC-EEEEEecCC
Confidence 46789999999999875 34455555 3433 4555543 5779999999997 9999999855 356667899
Q ss_pred CCHHHHHHHHhc
Q 021976 251 FTRLAIANFVTH 262 (304)
Q Consensus 251 ~~~~~i~~fi~~ 262 (304)
.+.+.|.+||.+
T Consensus 99 ~~~~~l~~~i~~ 110 (111)
T cd02963 99 FTKQHVVDFVRK 110 (111)
T ss_pred CCHHHHHHHHhc
Confidence 999999999975
No 184
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.37 E-value=6.4e-06 Score=69.32 Aligned_cols=87 Identities=16% Similarity=0.216 Sum_probs=65.9
Q ss_pred CCCcEEEEEE-cCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc----------------------------cHHHHH
Q 021976 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK 121 (304)
Q Consensus 72 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 121 (304)
+++.+++.|| ++||+.|..+.+.+.+.++++++ ++.++.|.++. +.++++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4566777777 89999999999999999999975 67777777643 235788
Q ss_pred hCCCc-----cccEEEEEe-CCeEEEEee----CCCCHHHHHHHHHH
Q 021976 122 EYNIL-----AYPTLYLFV-AGVRQFQFF----GERTRDVISAWVRE 158 (304)
Q Consensus 122 ~~~v~-----~~Pt~~~~~-~g~~~~~~~----g~~~~~~l~~~i~~ 158 (304)
.||+. ..|+.++++ +|++...+. ..++.+++.+.|..
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~a 223 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDA 223 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 89985 589999998 887766552 34677777777653
No 185
>PRK13189 peroxiredoxin; Provisional
Probab=98.36 E-value=6e-06 Score=68.31 Aligned_cols=88 Identities=14% Similarity=0.205 Sum_probs=65.3
Q ss_pred CCC-cEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc---------------------------cHHHHHh
Q 021976 72 KNR-NVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKE 122 (304)
Q Consensus 72 ~~~-~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~~~~ 122 (304)
.++ .+|+.||++||+.|..+.+.+.++++++++ ++.++.|.++. +..+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 455 556788999999999999999999999976 67777777642 2356788
Q ss_pred CCCc-------cccEEEEEe-CCeEEEEee----CCCCHHHHHHHHHHH
Q 021976 123 YNIL-------AYPTLYLFV-AGVRQFQFF----GERTRDVISAWVREK 159 (304)
Q Consensus 123 ~~v~-------~~Pt~~~~~-~g~~~~~~~----g~~~~~~l~~~i~~~ 159 (304)
||+. ..|++++++ +|++..... ..++.+++.+.|...
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8875 468888998 886654443 345677777777643
No 186
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.35 E-value=6.8e-06 Score=67.60 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=66.6
Q ss_pred CCCc-EEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc---------------------------cHHHHHh
Q 021976 72 KNRN-VMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKE 122 (304)
Q Consensus 72 ~~~~-~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~~~~ 122 (304)
.++. +|+.||++||+.|..+.+.+.++++++++ ++.++.|+++. +..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 3554 57899999999999999999999999976 78888888753 2356778
Q ss_pred CCCc-------cccEEEEEe-CCeEEEEee----CCCCHHHHHHHHHHH
Q 021976 123 YNIL-------AYPTLYLFV-AGVRQFQFF----GERTRDVISAWVREK 159 (304)
Q Consensus 123 ~~v~-------~~Pt~~~~~-~g~~~~~~~----g~~~~~~l~~~i~~~ 159 (304)
||+. ..|++++++ +|++...+. ..++.+++.+.+...
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8873 579999998 787655442 235677777777643
No 187
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.35 E-value=5e-06 Score=59.37 Aligned_cols=89 Identities=18% Similarity=0.315 Sum_probs=72.7
Q ss_pred hhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCC-eEEE
Q 021976 63 GKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG-VRQF 141 (304)
Q Consensus 63 ~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g-~~~~ 141 (304)
.+.++..+..+++++|-|+.++|+ .....|.++|+.+.+.+.|+.+. +.++++++++. .|++.+|++. ....
T Consensus 7 ~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~~~~~ 79 (97)
T cd02981 7 KEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK-PGSVVLFKPFEEEPV 79 (97)
T ss_pred HHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC-CCceEEeCCcccCCc
Confidence 345666778889999999999987 56788999999998788898877 56778888875 4899999854 4567
Q ss_pred EeeCCCCHHHHHHHHHH
Q 021976 142 QFFGERTRDVISAWVRE 158 (304)
Q Consensus 142 ~~~g~~~~~~l~~~i~~ 158 (304)
.|.|..+.+.|.+|+..
T Consensus 80 ~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 80 EYDGEFTEESLVEFIKD 96 (97)
T ss_pred cCCCCCCHHHHHHHHHh
Confidence 79999999999999974
No 188
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.35 E-value=4e-06 Score=58.35 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=57.9
Q ss_pred EEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccH----HHHHhCC--CccccEEEEEeCCeEEEEeeCCCCH
Q 021976 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK----DLAKEYN--ILAYPTLYLFVAGVRQFQFFGERTR 149 (304)
Q Consensus 76 ~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g~~~~ 149 (304)
-++.|+.+||++|++....++++..++. ++.+..+|.++++ ++.+..+ +..+|++++ +|+. .| ..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~----ig--g~ 72 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKH----IG--GC 72 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEE----Ec--CH
Confidence 3678999999999999999999998764 7888899988653 4555444 578999864 7743 33 33
Q ss_pred HHHHHHHHHHhC
Q 021976 150 DVISAWVREKMT 161 (304)
Q Consensus 150 ~~l~~~i~~~~~ 161 (304)
+++.++++.+++
T Consensus 73 ~~~~~~~~~~~~ 84 (85)
T PRK11200 73 TDFEAYVKENLG 84 (85)
T ss_pred HHHHHHHHHhcc
Confidence 678888777653
No 189
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.34 E-value=7.7e-06 Score=67.33 Aligned_cols=88 Identities=16% Similarity=0.190 Sum_probs=65.6
Q ss_pred CCCc-EEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc---------------------------cHHHHHh
Q 021976 72 KNRN-VMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKE 122 (304)
Q Consensus 72 ~~~~-~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~~~~ 122 (304)
+++. +|+.||++||+.|..+.+.+.+.++++++ ++.++.|+++. +..+++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 3554 45588999999999999999999999975 77888887652 2356778
Q ss_pred CCCc-------cccEEEEEe-CCeEEEEeeC----CCCHHHHHHHHHHH
Q 021976 123 YNIL-------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVREK 159 (304)
Q Consensus 123 ~~v~-------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~~ 159 (304)
||+. ..|+.++++ +|++...+.+ .++.+++.+.++..
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8863 368888887 8866655432 36788888887653
No 190
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.33 E-value=8.3e-06 Score=67.87 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=68.9
Q ss_pred CCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcc-----------cHHHHHhCCCccccEEEEEe-C-CeE
Q 021976 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-----------EKDLAKEYNILAYPTLYLFV-A-GVR 139 (304)
Q Consensus 73 ~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-----------~~~~~~~~~v~~~Pt~~~~~-~-g~~ 139 (304)
++.-|+.||.+.|++|+++.|.++.++++++ +.+..|+.|. +...++++||..+|++++.. + ++.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 4678999999999999999999999999995 6676666653 34467899999999999998 3 333
Q ss_pred EEEeeCCCCHHHHHHHHHHHh
Q 021976 140 QFQFFGERTRDVISAWVREKM 160 (304)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~~~ 160 (304)
.-.-.|..+.++|.+-+....
T Consensus 221 ~pv~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred EEEeeccCCHHHHHHHHHHHH
Confidence 334469999999988776554
No 191
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.29 E-value=3.3e-06 Score=63.49 Aligned_cols=84 Identities=14% Similarity=0.216 Sum_probs=52.4
Q ss_pred cChhcHHHHh-cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhC---CCccccEEEEEe-
Q 021976 61 LNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY---NILAYPTLYLFV- 135 (304)
Q Consensus 61 l~~~~~~~~~-~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~---~v~~~Pt~~~~~- 135 (304)
++++....+. ...+..++-|..+||+.|...-|.+.++++..+ ++.+--+.-+++.++..+| |...+|++++++
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~ 106 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDK 106 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-T
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcC
Confidence 3444444333 234557777999999999999999999999876 6777777777777776654 688999999997
Q ss_pred CCeEEEEeeC
Q 021976 136 AGVRQFQFFG 145 (304)
Q Consensus 136 ~g~~~~~~~g 145 (304)
+|+.+.++..
T Consensus 107 ~~~~lg~wge 116 (129)
T PF14595_consen 107 DGKELGRWGE 116 (129)
T ss_dssp T--EEEEEES
T ss_pred CCCEeEEEcC
Confidence 6777777643
No 192
>PTZ00051 thioredoxin; Provisional
Probab=98.27 E-value=1e-05 Score=57.82 Aligned_cols=89 Identities=17% Similarity=0.163 Sum_probs=66.4
Q ss_pred ceecCCHHHHHHhhccCCeEEEEEecCCCCccH---HHHHHHhccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEE
Q 021976 164 TYSITTTDEAERILTVESKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFL 237 (304)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~v~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~P~lv~~ 237 (304)
+.++.+.+++.+.++.+..+++.|+.+||.++. ..+..++....++.|..+ .+.+++++|++.+ .|++++|
T Consensus 2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~---~Pt~~~~ 78 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITS---MPTFKVF 78 (98)
T ss_pred eEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCce---eeEEEEE
Confidence 567788899999999889999999999998754 335555543345666543 5678999999996 9999999
Q ss_pred ecCCCceecccCCCCHHHHH
Q 021976 238 HLEAGKATPFRHQFTRLAIA 257 (304)
Q Consensus 238 ~~~~~~~~~y~g~~~~~~i~ 257 (304)
+.+. ....+.|. ..++|+
T Consensus 79 ~~g~-~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 79 KNGS-VVDTLLGA-NDEALK 96 (98)
T ss_pred eCCe-EEEEEeCC-CHHHhh
Confidence 7663 56677774 555554
No 193
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.27 E-value=4e-06 Score=69.87 Aligned_cols=91 Identities=14% Similarity=0.191 Sum_probs=72.4
Q ss_pred cCCeEEEEEecCCCCc------cHHHHHHH-hccCCceeE---EEecCHHHHhhcCCCCCCCCCeEEEEecCCCceeccc
Q 021976 179 VESKLVLGFLHDLEGM------ESEELAAA-SKLHSDVNF---YQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFR 248 (304)
Q Consensus 179 ~~~~~~v~f~~~~~~~------~~~~~~~~-a~~~~~~~f---~~~~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~ 248 (304)
+++.|+|-||.|||.. .|...... .+..--+++ .++..+.++..|+|++ ||+|.+|+.+ ....|.
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqG---YPTIk~~kgd--~a~dYR 116 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQG---YPTIKFFKGD--HAIDYR 116 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCC---CceEEEecCC--eeeecC
Confidence 4779999999999974 34333322 122223344 4678999999999997 9999999877 889999
Q ss_pred CCCCHHHHHHHHhcCCCCcEEeeCcc
Q 021976 249 HQFTRLAIANFVTHTKHPLVVTLTIH 274 (304)
Q Consensus 249 g~~~~~~i~~fi~~~~~p~~~~l~~~ 274 (304)
|.++.++|.+|.....-|.+..+++.
T Consensus 117 G~R~Kd~iieFAhR~a~aiI~pi~en 142 (468)
T KOG4277|consen 117 GGREKDAIIEFAHRCAAAIIEPINEN 142 (468)
T ss_pred CCccHHHHHHHHHhcccceeeecChh
Confidence 99999999999999999999999883
No 194
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.26 E-value=1.1e-05 Score=73.25 Aligned_cols=97 Identities=11% Similarity=0.168 Sum_probs=71.7
Q ss_pred CCceecCCHHHHHHhhc---cCCeEEEEEecCCCCcc---HHHHHHHh-ccCCc-eeEEEe---cC-HHHH-hhcCCCCC
Q 021976 162 LGTYSITTTDEAERILT---VESKLVLGFLHDLEGME---SEELAAAS-KLHSD-VNFYQT---TS-ADVA-EFFHIHPK 228 (304)
Q Consensus 162 ~~~~~l~~~~~~~~~~~---~~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~~-~~f~~~---~~-~~l~-~~~~i~~~ 228 (304)
..+.++ +.++++..+. .+++++|.||.+||.++ ...|.+++ .+.+. +.|+.+ .+ .+++ ++|+|..
T Consensus 351 ~~Vv~L-~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~- 428 (463)
T TIGR00424 351 NNVVSL-SRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS- 428 (463)
T ss_pred CCeEEC-CHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCc-
Confidence 345566 5567888764 57789999999999875 44566666 45443 556543 22 2344 7899997
Q ss_pred CCCCeEEEEecCCCceeccc-CCCCHHHHHHHHhc
Q 021976 229 SKRPALIFLHLEAGKATPFR-HQFTRLAIANFVTH 262 (304)
Q Consensus 229 ~~~P~lv~~~~~~~~~~~y~-g~~~~~~i~~fi~~ 262 (304)
+|++++|+++...+..|. |.++.++|..||+.
T Consensus 429 --~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 429 --FPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred --cceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 999999999877788997 58999999999974
No 195
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.26 E-value=8e-06 Score=68.04 Aligned_cols=80 Identities=14% Similarity=0.250 Sum_probs=60.4
Q ss_pred CCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEe----------------------------------------
Q 021976 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD---------------------------------------- 112 (304)
Q Consensus 73 ~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd---------------------------------------- 112 (304)
++.+++.|..+.|++|+++++++.++.+. ++.+..+.
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~ 183 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS 183 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence 47789999999999999999998876541 22222211
Q ss_pred ----CcccHHHHHhCCCccccEEEEEeCCeEEEEeeCCCCHHHHHHHHHHH
Q 021976 113 ----AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159 (304)
Q Consensus 113 ----~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (304)
++++.++++++||+++|+++ +.+|+. ..|..+.++|.++|.+.
T Consensus 184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~---~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 184 CDVDIADHYALGVQFGVQGTPAIV-LSNGTL---VPGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccchHHHhHHHHHHcCCccccEEE-EcCCeE---eeCCCCHHHHHHHHHHc
Confidence 12345689999999999998 678843 48999999999998754
No 196
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.25 E-value=7.5e-06 Score=59.76 Aligned_cols=69 Identities=16% Similarity=0.261 Sum_probs=53.2
Q ss_pred HHHHHHhhc--cCCeEEEEEecCCCCccH---HHHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecC
Q 021976 170 TDEAERILT--VESKLVLGFLHDLEGMES---EELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLE 240 (304)
Q Consensus 170 ~~~~~~~~~--~~~~~~v~f~~~~~~~~~---~~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~P~lv~~~~~ 240 (304)
.+++++.+. .+.+++|.|+++||+|+. ..+.+++ ++.+.+.|+.+ .+++++++|+|.+ .|++++|+++
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~---iPTf~~fk~G 78 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYD---PPTVMFFFRN 78 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCC---CCEEEEEECC
Confidence 356666665 466899999999999854 5576776 45555666644 7889999999997 9999999987
Q ss_pred C
Q 021976 241 A 241 (304)
Q Consensus 241 ~ 241 (304)
.
T Consensus 79 ~ 79 (114)
T cd02954 79 K 79 (114)
T ss_pred E
Confidence 5
No 197
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.24 E-value=1.7e-05 Score=57.31 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=64.1
Q ss_pred CHHHHHHhhcc--CCeEEEEEecCCCCccH---HHHHHHhccCCceeEEEe---cC---HHHHhhcCCCCCCCCCeEEEE
Q 021976 169 TTDEAERILTV--ESKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQT---TS---ADVAEFFHIHPKSKRPALIFL 237 (304)
Q Consensus 169 ~~~~~~~~~~~--~~~~~v~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~---~~---~~l~~~~~i~~~~~~P~lv~~ 237 (304)
+.+++++.+.+ +++++|.|+.+||+++. ..+..+++...++.|..+ .+ .+++++|++++ .|++++|
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~---~Pt~~~~ 78 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIE---VPHFLFY 78 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCc---CCEEEEE
Confidence 56777777754 67899999999999854 445555533356667654 33 37999999997 9999999
Q ss_pred ecCCCceecccCCCCHHHHHHHHhc
Q 021976 238 HLEAGKATPFRHQFTRLAIANFVTH 262 (304)
Q Consensus 238 ~~~~~~~~~y~g~~~~~~i~~fi~~ 262 (304)
+++. ....+.|. +.++|++-|..
T Consensus 79 ~~G~-~v~~~~G~-~~~~l~~~~~~ 101 (103)
T cd02985 79 KDGE-KIHEEEGI-GPDELIGDVLY 101 (103)
T ss_pred eCCe-EEEEEeCC-CHHHHHHHHHh
Confidence 7664 66788884 56777766543
No 198
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.23 E-value=1.8e-05 Score=58.01 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=80.9
Q ss_pred cEEcChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHH---hhCCcEEEEEeCcccHHHHHhCCCcc--ccEEE
Q 021976 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKM---LKGEADLVMVDAYLEKDLAKEYNILA--YPTLY 132 (304)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~---~~~~~~~~~vd~~~~~~~~~~~~v~~--~Pt~~ 132 (304)
|.+++.++...+...+.+..+.|+.+ ..-....+.+.++|++ +++++.|+.+|.++.....+.+|++. .|.+.
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~ 78 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIA 78 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEE
Confidence 34678888888887777777677722 2346788899999999 99899999999999888999999997 89999
Q ss_pred EEeCCe-EEEE-eeCCCCHHHHHHHHHHHhC
Q 021976 133 LFVAGV-RQFQ-FFGERTRDVISAWVREKMT 161 (304)
Q Consensus 133 ~~~~g~-~~~~-~~g~~~~~~l~~~i~~~~~ 161 (304)
+..... .... +.+..+.+.|.+|+++...
T Consensus 79 i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 79 IDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 987431 1222 4578999999999998764
No 199
>PLN02309 5'-adenylylsulfate reductase
Probab=98.21 E-value=1.2e-05 Score=72.97 Aligned_cols=96 Identities=9% Similarity=0.169 Sum_probs=72.5
Q ss_pred CceecCCHHHHHHhh---ccCCeEEEEEecCCCCcc---HHHHHHHh-ccCC-ceeEEEe----cCHHHHh-hcCCCCCC
Q 021976 163 GTYSITTTDEAERIL---TVESKLVLGFLHDLEGME---SEELAAAS-KLHS-DVNFYQT----TSADVAE-FFHIHPKS 229 (304)
Q Consensus 163 ~~~~l~~~~~~~~~~---~~~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~-~~~f~~~----~~~~l~~-~~~i~~~~ 229 (304)
.+..+ +.+++++.+ +.+..++|.||.+||.++ ...|..++ .+.+ .+.|+.+ .+.+++. .|+|++
T Consensus 346 ~Vv~L-t~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~-- 422 (457)
T PLN02309 346 NVVAL-SRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS-- 422 (457)
T ss_pred CcEEC-CHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCce--
Confidence 45555 556777766 357789999999999875 34566665 3433 3666654 3457776 699997
Q ss_pred CCCeEEEEecCCCceecccC-CCCHHHHHHHHhc
Q 021976 230 KRPALIFLHLEAGKATPFRH-QFTRLAIANFVTH 262 (304)
Q Consensus 230 ~~P~lv~~~~~~~~~~~y~g-~~~~~~i~~fi~~ 262 (304)
+|++++|+++...+..|.| .++.++|..||+.
T Consensus 423 -~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 423 -FPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred -eeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHH
Confidence 9999999988878899985 6999999999985
No 200
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.20 E-value=1.7e-05 Score=57.50 Aligned_cols=86 Identities=20% Similarity=0.236 Sum_probs=62.9
Q ss_pred HHHHHhhccCCeEEEEEecCCCCccH---HHHHHHh-ccC---CceeEEE---ecCHHHHhhcCCCCCCCCCeEEEEecC
Q 021976 171 DEAERILTVESKLVLGFLHDLEGMES---EELAAAS-KLH---SDVNFYQ---TTSADVAEFFHIHPKSKRPALIFLHLE 240 (304)
Q Consensus 171 ~~~~~~~~~~~~~~v~f~~~~~~~~~---~~~~~~a-~~~---~~~~f~~---~~~~~l~~~~~i~~~~~~P~lv~~~~~ 240 (304)
+++++. ..+..++|.|+.+||.++. ..+..++ .+. ..+.++. ...++++++|++.+ +|++++|+.+
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~---~Pt~~l~~~~ 82 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRG---YPTIKLLKGD 82 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCcc---ccEEEEEcCC
Confidence 455554 3467899999999998643 3344444 232 2355553 35789999999997 9999999654
Q ss_pred CCceecccCCCCHHHHHHHHhc
Q 021976 241 AGKATPFRHQFTRLAIANFVTH 262 (304)
Q Consensus 241 ~~~~~~y~g~~~~~~i~~fi~~ 262 (304)
....|.|..+.++|.+|+++
T Consensus 83 --~~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 83 --LAYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred --CceeecCCCCHHHHHHHHHh
Confidence 56778999999999999985
No 201
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.19 E-value=1.8e-05 Score=59.63 Aligned_cols=102 Identities=18% Similarity=0.228 Sum_probs=77.6
Q ss_pred CCceecCCHHHHHHhhccCCeEEEEEecCC--CC-----ccHHHHHHHh-ccCCc-eeEEEe---cCHHHHhhcCCCCCC
Q 021976 162 LGTYSITTTDEAERILTVESKLVLGFLHDL--EG-----MESEELAAAS-KLHSD-VNFYQT---TSADVAEFFHIHPKS 229 (304)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~~~~v~f~~~~--~~-----~~~~~~~~~a-~~~~~-~~f~~~---~~~~l~~~~~i~~~~ 229 (304)
+.+.++++.+.+++...+...++|+|+... ++ .....+..+| .++++ +.|..+ ....+.+.||+.. .
T Consensus 2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~-~ 80 (130)
T cd02983 2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGG-F 80 (130)
T ss_pred CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCc-c
Confidence 467788888888877766778888888753 11 2455677777 68888 888764 4446999999963 2
Q ss_pred CCCeEEEEecCCCceecccCCCCHHHHHHHHhcCC
Q 021976 230 KRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTK 264 (304)
Q Consensus 230 ~~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi~~~~ 264 (304)
++|++++++..++++..+.|+++.++|.+|+.+..
T Consensus 81 ~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l 115 (130)
T cd02983 81 GYPAMVAINFRKMKFATLKGSFSEDGINEFLRELS 115 (130)
T ss_pred CCCEEEEEecccCccccccCccCHHHHHHHHHHHH
Confidence 68999999987655555889999999999999743
No 202
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.18 E-value=1.3e-05 Score=58.87 Aligned_cols=74 Identities=20% Similarity=0.373 Sum_probs=50.2
Q ss_pred hcHHHHh----cCCCcEEEEEEc-------CCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccH-------HHHH--hC
Q 021976 64 KNFSEFM----GKNRNVMVMFYA-------NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-------DLAK--EY 123 (304)
Q Consensus 64 ~~~~~~~----~~~~~~lv~f~a-------~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-------~~~~--~~ 123 (304)
++|.+.+ .++++++|.|++ +|||.|....|.+++.-...+++..++.|.....+ .+-+ ++
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~ 85 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDL 85 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEccee
Confidence 4455555 345889999997 49999999999999988887667788877763221 2223 49
Q ss_pred CCccccEEEEEeCC
Q 021976 124 NILAYPTLYLFVAG 137 (304)
Q Consensus 124 ~v~~~Pt~~~~~~g 137 (304)
+++++||++-+..+
T Consensus 86 ~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 86 KLKGIPTLIRWETG 99 (119)
T ss_dssp ---SSSEEEECTSS
T ss_pred eeeecceEEEECCC
Confidence 99999999999766
No 203
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.18 E-value=1.8e-05 Score=57.42 Aligned_cols=98 Identities=13% Similarity=0.046 Sum_probs=69.7
Q ss_pred HHHHHHHhCCCceecCCHHHHHHhhccCCeEEEEEecCC--CCc---cHHHHHHHh-ccCCceeEEE---ecCHHHHhhc
Q 021976 153 SAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDL--EGM---ESEELAAAS-KLHSDVNFYQ---TTSADVAEFF 223 (304)
Q Consensus 153 ~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~f~~~~--~~~---~~~~~~~~a-~~~~~~~f~~---~~~~~l~~~~ 223 (304)
.+++....+-+ ++ +.+++++..+.+...++.|+.+| |.+ ....+.+++ ++.+.+.|+. ..+++++.+|
T Consensus 3 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f 79 (111)
T cd02965 3 VARLQTRHGWP--RV-DAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARF 79 (111)
T ss_pred hHHHHHhcCCc--cc-ccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHc
Confidence 44555444322 33 45667788888889999999996 665 455666676 4556666654 4788999999
Q ss_pred CCCCCCCCCeEEEEecCCCceecccCCCCHHHHH
Q 021976 224 HIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIA 257 (304)
Q Consensus 224 ~i~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~i~ 257 (304)
+|.+ .||+++|+++. ....+.|..+.+++.
T Consensus 80 ~V~s---IPTli~fkdGk-~v~~~~G~~~~~e~~ 109 (111)
T cd02965 80 GVLR---TPALLFFRDGR-YVGVLAGIRDWDEYV 109 (111)
T ss_pred CCCc---CCEEEEEECCE-EEEEEeCccCHHHHh
Confidence 9997 99999999874 555677877776653
No 204
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.16 E-value=3.3e-05 Score=62.96 Aligned_cols=87 Identities=17% Similarity=0.364 Sum_probs=64.7
Q ss_pred CCCcEEEEEEc-CCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc----------------------------cHHHHH
Q 021976 72 KNRNVMVMFYA-NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK 121 (304)
Q Consensus 72 ~~~~~lv~f~a-~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 121 (304)
.++.++|.||+ +||+.|..+.+.+.++++++++ ++.++.|+++. +.++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 46789999995 8899999999999999999986 78888887652 235778
Q ss_pred hCCCc------cccEEEEEe-CCeEEEEeeC----CCCHHHHHHHHHH
Q 021976 122 EYNIL------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVRE 158 (304)
Q Consensus 122 ~~~v~------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~ 158 (304)
.||+. .+|+.++++ +|+....+.+ .++.+++.+.|..
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a 162 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEA 162 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHh
Confidence 88885 468888898 7866655544 2455555555543
No 205
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.15 E-value=1.8e-05 Score=52.94 Aligned_cols=67 Identities=13% Similarity=0.155 Sum_probs=46.9
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhC----CCccccEEEEEeCCeEEEEeeCCCCHHHH
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY----NILAYPTLYLFVAGVRQFQFFGERTRDVI 152 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~----~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 152 (304)
++.|+++||++|++..+.+.+. ++.+..+|.+.++...+.+ ++.++|++++ +| ....| .+.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~---~~i~g-~~~~~l 69 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD---EHLSG-FRPDKL 69 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC---EEEec-CCHHHH
Confidence 5789999999999988777652 5677788887765544443 6889999975 45 23344 455666
Q ss_pred HHH
Q 021976 153 SAW 155 (304)
Q Consensus 153 ~~~ 155 (304)
.++
T Consensus 70 ~~~ 72 (73)
T cd02976 70 RAL 72 (73)
T ss_pred Hhh
Confidence 655
No 206
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.14 E-value=2.4e-05 Score=56.15 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=72.7
Q ss_pred CCcEEcChhcHHHHhcCCCcEEEEEEcCCC---hhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEE
Q 021976 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWC---YWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY 132 (304)
Q Consensus 56 ~~v~~l~~~~~~~~~~~~~~~lv~f~a~wC---~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 132 (304)
.....++.++++..+..+...++ |++..| +.|....=++-++.+.+++.+..+.++-..+..+..+||+...|+++
T Consensus 9 ~g~~~vd~~~ld~~l~~~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLv 87 (107)
T PF07449_consen 9 HGWPRVDADTLDAFLAAPGDAVL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALV 87 (107)
T ss_dssp -TEEEE-CCCHHHHHHCCSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEE
T ss_pred cCCeeechhhHHHHHhCCCcEEE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEE
Confidence 35677888999999977666555 455444 44444455778888888877888888877888999999999999999
Q ss_pred EEeCCeEEEEeeCCCCHHH
Q 021976 133 LFVAGVRQFQFFGERTRDV 151 (304)
Q Consensus 133 ~~~~g~~~~~~~g~~~~~~ 151 (304)
++++|+.+....|.++..+
T Consensus 88 f~R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 88 FFRDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp EEETTEEEEEEESSSTHHH
T ss_pred EEECCEEEEEecCeecccc
Confidence 9999998999999888765
No 207
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.14 E-value=2e-05 Score=60.46 Aligned_cols=89 Identities=16% Similarity=0.169 Sum_probs=65.2
Q ss_pred HHHHHhhccCCeEEEEEecCCCCccH---HHHHHHh-ccCCceeEEEe--c---CHHHHhhcCCCCCCCCCeEEEEecCC
Q 021976 171 DEAERILTVESKLVLGFLHDLEGMES---EELAAAS-KLHSDVNFYQT--T---SADVAEFFHIHPKSKRPALIFLHLEA 241 (304)
Q Consensus 171 ~~~~~~~~~~~~~~v~f~~~~~~~~~---~~~~~~a-~~~~~~~f~~~--~---~~~l~~~~~i~~~~~~P~lv~~~~~~ 241 (304)
.+++..+..+.+++|.|+.+||.++. ..+.+++ .+.+++.|..+ . ..+++++|++.+ +|++++|+.++
T Consensus 11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~---iPt~v~~~~~G 87 (142)
T cd02950 11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDG---IPHFVFLDREG 87 (142)
T ss_pred CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCC---CCEEEEECCCC
Confidence 34566667788999999999998753 4444444 34445555532 2 247899999997 99999997666
Q ss_pred CceecccCCCCHHHHHHHHhc
Q 021976 242 GKATPFRHQFTRLAIANFVTH 262 (304)
Q Consensus 242 ~~~~~y~g~~~~~~i~~fi~~ 262 (304)
.....+.|..+.+.|.++|..
T Consensus 88 ~~v~~~~G~~~~~~l~~~l~~ 108 (142)
T cd02950 88 NEEGQSIGLQPKQVLAQNLDA 108 (142)
T ss_pred CEEEEEeCCCCHHHHHHHHHH
Confidence 567778898888888888875
No 208
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.14 E-value=3.3e-05 Score=55.66 Aligned_cols=82 Identities=17% Similarity=0.304 Sum_probs=61.3
Q ss_pred CCeEEEEEecCCCCc---cHHHHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecCCCceeccc-CCC
Q 021976 180 ESKLVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFR-HQF 251 (304)
Q Consensus 180 ~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~-g~~ 251 (304)
..++++.|+++||++ ..+.+..+| ++++++.|+.+ .++++++.|++.. .+.|++++++..++....+. |..
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~-~~~P~~~~~~~~~~~k~~~~~~~~ 90 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKE-EDLPVIAIINLSDGKKYLMPEEEL 90 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCCh-hhCCEEEEEecccccccCCCcccc
Confidence 567888899998865 455667777 67788998876 3456999999981 13999999998533444454 445
Q ss_pred CHHHHHHHHhc
Q 021976 252 TRLAIANFVTH 262 (304)
Q Consensus 252 ~~~~i~~fi~~ 262 (304)
+.++|.+||.+
T Consensus 91 ~~~~l~~fi~~ 101 (103)
T cd02982 91 TAESLEEFVED 101 (103)
T ss_pred CHHHHHHHHHh
Confidence 99999999975
No 209
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=2e-05 Score=57.02 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=68.0
Q ss_pred hhcHHHHh--cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEE
Q 021976 63 GKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140 (304)
Q Consensus 63 ~~~~~~~~--~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 140 (304)
....++++ ...+.++|-|..+|-+.|.++...+.++++...+-..++-+|.++-+++.+-|++...||+++|-+++-+
T Consensus 11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHm 90 (142)
T KOG3414|consen 11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHM 90 (142)
T ss_pred HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceE
Confidence 35566666 3468999999999999999999999999999998788999999999999999999999999888777543
No 210
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=1.1e-05 Score=58.01 Aligned_cols=73 Identities=23% Similarity=0.370 Sum_probs=57.0
Q ss_pred hcHHHHh---cCCCcEEEEEEc--------CCChhhhhhHHHHHHHHHHhhCCcEEEEEeCccc-------HHHHHhCCC
Q 021976 64 KNFSEFM---GKNRNVMVMFYA--------NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-------KDLAKEYNI 125 (304)
Q Consensus 64 ~~~~~~~---~~~~~~lv~f~a--------~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-------~~~~~~~~v 125 (304)
+.|++.+ .+++.++|+|++ +|||.|.+..|.+.+.-+....++.|+.|+..+- ..+-.+.++
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~ 92 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGI 92 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCc
Confidence 5566555 456669999997 6999999999999999987777899999997542 344556666
Q ss_pred -ccccEEEEEeC
Q 021976 126 -LAYPTLYLFVA 136 (304)
Q Consensus 126 -~~~Pt~~~~~~ 136 (304)
.++||+.=+++
T Consensus 93 lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 93 LTAVPTLLRWKR 104 (128)
T ss_pred eeecceeeEEcC
Confidence 89999987764
No 211
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.12 E-value=3e-05 Score=57.07 Aligned_cols=92 Identities=14% Similarity=0.182 Sum_probs=63.6
Q ss_pred CceecCCHHHHHHhhccC---CeEEEEEecCCCCcc---HHHHHHHhccCCceeEEEe---cCHHHHhhcCCCCCCCCCe
Q 021976 163 GTYSITTTDEAERILTVE---SKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPA 233 (304)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~---~~~~v~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~P~ 233 (304)
.+.++++ +++.+.+.+. .+++|.|+.+||+++ ...+..++....++.|..+ .+ +++++|+++. .|+
T Consensus 5 ~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~---~Pt 79 (113)
T cd02957 5 EVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKV---LPT 79 (113)
T ss_pred eEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCc---CCE
Confidence 4556766 6776666544 788899999999874 4556666644455666654 33 8999999996 999
Q ss_pred EEEEecCCCceecccC-------CCCHHHHHHHH
Q 021976 234 LIFLHLEAGKATPFRH-------QFTRLAIANFV 260 (304)
Q Consensus 234 lv~~~~~~~~~~~y~g-------~~~~~~i~~fi 260 (304)
+++|+.+. ....+.| .++.+.|.+|+
T Consensus 80 ~~~f~~G~-~v~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 80 LLVYKNGE-LIDNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred EEEEECCE-EEEEEecHHHhCCCCCCHHHHHHHh
Confidence 99999875 3344443 24667777665
No 212
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.10 E-value=0.0001 Score=55.59 Aligned_cols=108 Identities=18% Similarity=0.217 Sum_probs=81.3
Q ss_pred CcEEcChhcHH-HHhcCCCcEEEEEEcC--CChh-h-hhhHHHHHHHHHHhhCC-cEEEEEeCcccHHHHHhCCCc--cc
Q 021976 57 DVVSLNGKNFS-EFMGKNRNVMVMFYAN--WCYW-S-KKLAPEFAAAAKMLKGE-ADLVMVDAYLEKDLAKEYNIL--AY 128 (304)
Q Consensus 57 ~v~~l~~~~~~-~~~~~~~~~lv~f~a~--wC~~-C-~~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~--~~ 128 (304)
.+++|+.++.- ..=.+++.-+|-|.-. -|.. + ......+.++|++++++ +.|+-+|.++...+.+.||+. ++
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~ 82 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGY 82 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCC
Confidence 56777776654 3344556667777543 1322 3 45678899999999997 999999999999999999995 49
Q ss_pred cEEEEEeCCe-EEEEeeCCCCHHHHHHHHHHHhCCCc
Q 021976 129 PTLYLFVAGV-RQFQFFGERTRDVISAWVREKMTLGT 164 (304)
Q Consensus 129 Pt~~~~~~g~-~~~~~~g~~~~~~l~~~i~~~~~~~~ 164 (304)
|++++++..+ ....+.|..+.+.+.+|+++.+...+
T Consensus 83 P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 83 PAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 9999998432 22227799999999999999986554
No 213
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.10 E-value=5.6e-05 Score=57.43 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=66.7
Q ss_pred ceecCCHHHHHHhhc--cCCeEEEEEecCCCCcc---HHHHHHHh-ccCCceeEEE---ecCHHHHhhcCCCCCCCCCeE
Q 021976 164 TYSITTTDEAERILT--VESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQ---TTSADVAEFFHIHPKSKRPAL 234 (304)
Q Consensus 164 ~~~l~~~~~~~~~~~--~~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~---~~~~~l~~~~~i~~~~~~P~l 234 (304)
+..+.+.+++++.+. .+.+++|-|+++||+|+ .+.+.+++ ++.+.+.|+. ..++++++.|+|.+ .|++
T Consensus 5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~---~~t~ 81 (142)
T PLN00410 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYD---PCTV 81 (142)
T ss_pred HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccC---CCcE
Confidence 345678889988885 46688889999999984 45566666 4545455554 47889999999995 5666
Q ss_pred E-EEecCCCceecccC--------CCCHHHHHHHHhc
Q 021976 235 I-FLHLEAGKATPFRH--------QFTRLAIANFVTH 262 (304)
Q Consensus 235 v-~~~~~~~~~~~y~g--------~~~~~~i~~fi~~ 262 (304)
+ +|+.+....-...| ..+.++|.+-++.
T Consensus 82 ~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~ 118 (142)
T PLN00410 82 MFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
T ss_pred EEEEECCeEEEEEecccccccccccCCHHHHHHHHHH
Confidence 6 78766434444456 3466777666653
No 214
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.07 E-value=4.5e-05 Score=54.45 Aligned_cols=83 Identities=12% Similarity=0.135 Sum_probs=62.5
Q ss_pred HhhccCCeEEEEEecCCCCccHH---HHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecCCCceecc
Q 021976 175 RILTVESKLVLGFLHDLEGMESE---ELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKATPF 247 (304)
Q Consensus 175 ~~~~~~~~~~v~f~~~~~~~~~~---~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y 247 (304)
.+.+.++++++.|+.+||..+.. .+..++ .+.+++.+..+ .++++.+++++.+ .|++++|+++ +....+
T Consensus 8 ~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~---vPt~~i~~~g-~~v~~~ 83 (97)
T cd02949 8 LYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMG---TPTVQFFKDK-ELVKEI 83 (97)
T ss_pred HHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCee---ccEEEEEECC-eEEEEE
Confidence 44556778899999999987543 344444 45456666543 5778999999986 9999999854 567788
Q ss_pred cCCCCHHHHHHHHh
Q 021976 248 RHQFTRLAIANFVT 261 (304)
Q Consensus 248 ~g~~~~~~i~~fi~ 261 (304)
.|..+.+.+.+|++
T Consensus 84 ~g~~~~~~~~~~l~ 97 (97)
T cd02949 84 SGVKMKSEYREFIE 97 (97)
T ss_pred eCCccHHHHHHhhC
Confidence 89889999999874
No 215
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.06 E-value=2.1e-05 Score=64.06 Aligned_cols=76 Identities=16% Similarity=0.269 Sum_probs=55.5
Q ss_pred CCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEE-----------------------------------------
Q 021976 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMV----------------------------------------- 111 (304)
Q Consensus 73 ~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v----------------------------------------- 111 (304)
++..++.|..+.|++|+++++.+.+. .+++.+..+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~----~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPN----ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhc----cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 57899999999999999999988761 112221111
Q ss_pred ----eCcccHHHHHhCCCccccEEEEEeCCeEEEEeeCCCCHHHHHHHH
Q 021976 112 ----DAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156 (304)
Q Consensus 112 ----d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (304)
+.+++..+++++||+++|+++ +.+|+. +.|..+.++|.++|
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 112345688999999999997 778843 57888888887764
No 216
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.03 E-value=4.7e-05 Score=53.13 Aligned_cols=86 Identities=15% Similarity=0.254 Sum_probs=63.8
Q ss_pred HHHHhhccCCeEEEEEecCCCCccHHH---HHHHhccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecCCCcee
Q 021976 172 EAERILTVESKLVLGFLHDLEGMESEE---LAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKAT 245 (304)
Q Consensus 172 ~~~~~~~~~~~~~v~f~~~~~~~~~~~---~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~ 245 (304)
+++..+..+.++++.|+.+||..+.+. +.+++....++.++.+ .+.++++.|++.. .|++++++.+. ...
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~---~P~~~~~~~g~-~~~ 77 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRS---IPTFLFFKNGK-EVD 77 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCccc---ccEEEEEECCE-EEE
Confidence 355566666888999999999875333 4444433566777643 4688999999986 99999998764 567
Q ss_pred cccCCCCHHHHHHHHh
Q 021976 246 PFRHQFTRLAIANFVT 261 (304)
Q Consensus 246 ~y~g~~~~~~i~~fi~ 261 (304)
.+.|..+.+.|.+||+
T Consensus 78 ~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 78 RVVGADPKEELEEFLE 93 (93)
T ss_pred EEecCCCHHHHHHHhC
Confidence 7788888899999874
No 217
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.03 E-value=5.4e-05 Score=55.38 Aligned_cols=99 Identities=12% Similarity=0.089 Sum_probs=71.1
Q ss_pred EcChhcHHHHhcCCCcEEEEEEc---CCChhhhhhHHHHHHHHHHhh-CCcEEEEEeCcccHHHHHhCCCcc----ccEE
Q 021976 60 SLNGKNFSEFMGKNRNVMVMFYA---NWCYWSKKLAPEFAAAAKMLK-GEADLVMVDAYLEKDLAKEYNILA----YPTL 131 (304)
Q Consensus 60 ~l~~~~~~~~~~~~~~~lv~f~a---~wC~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~v~~----~Pt~ 131 (304)
+++.++..... ..+..++.+-. ..-..-....+.+.++|+.++ +++.|+.+|.++.....+.||+.. .|.+
T Consensus 3 ~~~~en~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~ 81 (111)
T cd03073 3 HRTKDNRAQFT-KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVV 81 (111)
T ss_pred eeccchHHHhc-cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEE
Confidence 45666666664 33333443322 223444678899999999999 699999999999888899999984 9999
Q ss_pred EEEeCCeEEEEeeCCC-CHHHHHHHHHHH
Q 021976 132 YLFVAGVRQFQFFGER-TRDVISAWVREK 159 (304)
Q Consensus 132 ~~~~~g~~~~~~~g~~-~~~~l~~~i~~~ 159 (304)
++...+.......+.. +.+.|.+|+++.
T Consensus 82 ~i~~~~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 82 AIRTAKGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred EEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence 9987331222236677 999999999864
No 218
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.01 E-value=8e-05 Score=52.99 Aligned_cols=86 Identities=19% Similarity=0.239 Sum_probs=61.9
Q ss_pred HHHHHHhhccC--CeEEEEEecCCCCccH---HHHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecC
Q 021976 170 TDEAERILTVE--SKLVLGFLHDLEGMES---EELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLE 240 (304)
Q Consensus 170 ~~~~~~~~~~~--~~~~v~f~~~~~~~~~---~~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~P~lv~~~~~ 240 (304)
.+++++.+... ..++|.|+.+||.++. +.+..++ .+...+.+..+ ..++++++|+++. .|++++|+.+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~---~Pt~~~~~~g 78 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITA---VPTFVFFRNG 78 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCcc---ccEEEEEECC
Confidence 46677777665 8899999999998743 3344454 33566777654 5678999999996 9999999855
Q ss_pred CCceecccCCCCHHHHHHHH
Q 021976 241 AGKATPFRHQFTRLAIANFV 260 (304)
Q Consensus 241 ~~~~~~y~g~~~~~~i~~fi 260 (304)
.....+.| .+.+.|.+.|
T Consensus 79 -~~~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 79 -TIVDRVSG-ADPKELAKKV 96 (97)
T ss_pred -EEEEEEeC-CCHHHHHHhh
Confidence 34555566 4667777765
No 219
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.01 E-value=0.00016 Score=53.21 Aligned_cols=77 Identities=19% Similarity=0.289 Sum_probs=63.7
Q ss_pred hhcHHHHh--cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCcccc-EEEEEeCCeE
Q 021976 63 GKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYP-TLYLFVAGVR 139 (304)
Q Consensus 63 ~~~~~~~~--~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P-t~~~~~~g~~ 139 (304)
.-..++++ .+++.++|-|-.+|-+.|.++...+.+++++.++-..++.||.++-+++.+-|.+. -| |+++|-+|+-
T Consensus 8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnkh 86 (133)
T PF02966_consen 8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNKH 86 (133)
T ss_dssp HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTEE
T ss_pred cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCeE
Confidence 45566666 56799999999999999999999999999999988899999999999999999999 77 5666657754
Q ss_pred E
Q 021976 140 Q 140 (304)
Q Consensus 140 ~ 140 (304)
+
T Consensus 87 m 87 (133)
T PF02966_consen 87 M 87 (133)
T ss_dssp E
T ss_pred E
Confidence 3
No 220
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.01 E-value=5.2e-05 Score=71.66 Aligned_cols=91 Identities=16% Similarity=0.256 Sum_probs=72.7
Q ss_pred cChhcHHHHhcCCCcE-EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeE
Q 021976 61 LNGKNFSEFMGKNRNV-MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR 139 (304)
Q Consensus 61 l~~~~~~~~~~~~~~~-lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 139 (304)
++++..+++-.=++++ +-.|.+++|++|......+++++.+.+ ++..-.+|..+.++++++|+|.++|++++ ||+
T Consensus 463 l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~- 538 (555)
T TIGR03143 463 LGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQ- 538 (555)
T ss_pred CCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccHHHHHhCCceecCEEEE--CCE-
Confidence 4444444433334555 445689999999999999999999876 79999999999999999999999999987 774
Q ss_pred EEEeeCCCCHHHHHHHH
Q 021976 140 QFQFFGERTRDVISAWV 156 (304)
Q Consensus 140 ~~~~~g~~~~~~l~~~i 156 (304)
..+.|..+.+++.+||
T Consensus 539 -~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 539 -QVYFGKKTIEEMLELI 554 (555)
T ss_pred -EEEeeCCCHHHHHHhh
Confidence 3366988999998886
No 221
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=6.3e-05 Score=63.25 Aligned_cols=100 Identities=12% Similarity=0.191 Sum_probs=77.7
Q ss_pred CceecCCHHHHHHhhcc--CCeEEEEEecCCCCccHHH---HHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCe
Q 021976 163 GTYSITTTDEAERILTV--ESKLVLGFLHDLEGMESEE---LAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPA 233 (304)
Q Consensus 163 ~~~~l~~~~~~~~~~~~--~~~~~v~f~~~~~~~~~~~---~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~P~ 233 (304)
.+.++++.+.-+..+.+ ..+++|.|..+||+++.+. +..++ ...+++.++.+ .++.++.+|||++ .|+
T Consensus 24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqs---IPt 100 (304)
T COG3118 24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQS---IPT 100 (304)
T ss_pred cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCc---CCe
Confidence 36777665555555544 3489999999999986544 44444 68888888854 7889999999997 999
Q ss_pred EEEEecCCCceecccCCCCHHHHHHHHhcCCCC
Q 021976 234 LIFLHLEAGKATPFRHQFTRLAIANFVTHTKHP 266 (304)
Q Consensus 234 lv~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p 266 (304)
++.|+.+. ...-|.|...++.|+.|+.+..-+
T Consensus 101 V~af~dGq-pVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 101 VYAFKDGQ-PVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EEEeeCCc-CccccCCCCcHHHHHHHHHHhcCh
Confidence 99999884 556789999999999999987655
No 222
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.99 E-value=0.00012 Score=59.16 Aligned_cols=98 Identities=12% Similarity=0.155 Sum_probs=69.3
Q ss_pred CCceecCCHHHHHHhhccC--CeEEEEEecCCCCcc---HHHHHHHhccCCceeEEEecCHHHHhhcCCCCCCCCCeEEE
Q 021976 162 LGTYSITTTDEAERILTVE--SKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIF 236 (304)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~--~~~~v~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~~~~~l~~~~~i~~~~~~P~lv~ 236 (304)
..+.+++..+......+++ ..++|.||.+||.++ ...+..+|.....++|..+........|++.. .|++++
T Consensus 82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~~~~~~i~~---lPTlli 158 (192)
T cd02988 82 GEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQCIPNYPDKN---LPTILV 158 (192)
T ss_pred CeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHhHhhCCCCC---CCEEEE
Confidence 4566775544444555443 368888999999884 45577777555678999876666789999997 999999
Q ss_pred EecCCCceeccc------C-CCCHHHHHHHHhcC
Q 021976 237 LHLEAGKATPFR------H-QFTRLAIANFVTHT 263 (304)
Q Consensus 237 ~~~~~~~~~~y~------g-~~~~~~i~~fi~~~ 263 (304)
|+++. ....+. | .++.++|..++.++
T Consensus 159 yk~G~-~v~~ivG~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 159 YRNGD-IVKQFIGLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred EECCE-EEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence 99885 222332 2 46778888887654
No 223
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.99 E-value=5.3e-05 Score=52.72 Aligned_cols=95 Identities=19% Similarity=0.301 Sum_probs=78.2
Q ss_pred hhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcc--cHHHHHhCCCc----ccc-EEEEEe
Q 021976 63 GKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL--EKDLAKEYNIL----AYP-TLYLFV 135 (304)
Q Consensus 63 ~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~----~~P-t~~~~~ 135 (304)
..+|.+.+.....+||.|..+--.. ......+.++|+..++.-.++-|||.+ ...+|+++.|. .-| ++.-|+
T Consensus 9 ~KdfKKLLRTr~NVLvLy~ks~k~a-~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYK 87 (112)
T cd03067 9 HKDFKKLLRTRNNVLVLYSKSAKSA-EALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYK 87 (112)
T ss_pred hHHHHHHHhhcCcEEEEEecchhhH-HHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhccc
Confidence 4788899988888999988775433 344568899999999988999999987 67899999998 555 466778
Q ss_pred CCeEEEEeeCCCCHHHHHHHHHH
Q 021976 136 AGVRQFQFFGERTRDVISAWVRE 158 (304)
Q Consensus 136 ~g~~~~~~~g~~~~~~l~~~i~~ 158 (304)
+|.-...|+...+..+|..|++.
T Consensus 88 dG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 88 DGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred CCCccccccchhhHHHHHHHhhC
Confidence 99888899999999999999863
No 224
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.96 E-value=0.0001 Score=58.63 Aligned_cols=98 Identities=13% Similarity=0.164 Sum_probs=70.3
Q ss_pred CCceecCCHHHHHHhhccC---CeEEEEEecCCCCcc---HHHHHHHhccCCceeEEEecCH--HHHhhcCCCCCCCCCe
Q 021976 162 LGTYSITTTDEAERILTVE---SKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQTTSA--DVAEFFHIHPKSKRPA 233 (304)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~---~~~~v~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~~~~--~l~~~~~i~~~~~~P~ 233 (304)
..+.++++.+++.+.+... ..++|.|+.+||+++ ...+..+|.....++|..+... +++..|++.. .|+
T Consensus 62 g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~~l~~~f~v~~---vPT 138 (175)
T cd02987 62 GKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASATGASDEFDTDA---LPA 138 (175)
T ss_pred CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccchhhHHhCCCCC---CCE
Confidence 3467777756676666443 378888999999985 4557777755567888866333 6999999997 999
Q ss_pred EEEEecCCCceeccc-------CCCCHHHHHHHHhcC
Q 021976 234 LIFLHLEAGKATPFR-------HQFTRLAIANFVTHT 263 (304)
Q Consensus 234 lv~~~~~~~~~~~y~-------g~~~~~~i~~fi~~~ 263 (304)
+++|+.+. ....+. .+++.++|..|+.++
T Consensus 139 lllyk~G~-~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 139 LLVYKGGE-LIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred EEEEECCE-EEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 99999874 222221 257888999988764
No 225
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.96 E-value=0.00014 Score=53.58 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=61.3
Q ss_pred HHHhhccCCeEEEEEecCCCCccH---HHHHHHhccCCceeEEE---ecCHHHHhhcCCCCCCCCCeEEEEecCCC-cee
Q 021976 173 AERILTVESKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQ---TTSADVAEFFHIHPKSKRPALIFLHLEAG-KAT 245 (304)
Q Consensus 173 ~~~~~~~~~~~~v~f~~~~~~~~~---~~~~~~a~~~~~~~f~~---~~~~~l~~~~~i~~~~~~P~lv~~~~~~~-~~~ 245 (304)
+...+.....++|.|+.+||+++. +.+.+++...+.+.|.. ..+++++++|++.. .|++++|+.++. ...
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~---vPt~~i~~~g~~~~~~ 91 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVER---VPTTIFLQDGGKDGGI 91 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCc---CCEEEEEeCCeecceE
Confidence 333344455566667789998854 45555654445666664 37889999999997 999999987642 334
Q ss_pred cccCCCCHHHHHHHHhc
Q 021976 246 PFRHQFTRLAIANFVTH 262 (304)
Q Consensus 246 ~y~g~~~~~~i~~fi~~ 262 (304)
.|.|..+..++.+||..
T Consensus 92 ~~~G~~~~~el~~~i~~ 108 (113)
T cd02975 92 RYYGLPAGYEFASLIED 108 (113)
T ss_pred EEEecCchHHHHHHHHH
Confidence 78887788888888863
No 226
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.94 E-value=9.7e-05 Score=57.24 Aligned_cols=32 Identities=31% Similarity=0.427 Sum_probs=28.3
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhh
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK 103 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~ 103 (304)
+.+++++.|+.++|++|+++.|.+.++...+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 45789999999999999999999999887765
No 227
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.94 E-value=0.00018 Score=51.37 Aligned_cols=91 Identities=14% Similarity=0.222 Sum_probs=65.5
Q ss_pred ChhcHHHHhcC--CCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccH----HHHHhCCCc-cccEEEEE
Q 021976 62 NGKNFSEFMGK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK----DLAKEYNIL-AYPTLYLF 134 (304)
Q Consensus 62 ~~~~~~~~~~~--~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v~-~~Pt~~~~ 134 (304)
+.+++++++++ +++++|.=.++.|+-+......|++..+...+.+.++.+|.-+++ .++++|||. .-|.++++
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili 85 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI 85 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE
Confidence 45788888855 788999889999999999999999999988866999999998775 568899997 47999999
Q ss_pred eCCeEEEEee-CCCCHHHH
Q 021976 135 VAGVRQFQFF-GERTRDVI 152 (304)
Q Consensus 135 ~~g~~~~~~~-g~~~~~~l 152 (304)
++|+.+..-. +..+.+.|
T Consensus 86 ~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 86 KNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp ETTEEEEEEEGGG-SHHHH
T ss_pred ECCEEEEECccccCCHHhc
Confidence 9997765432 34555554
No 228
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.92 E-value=9.9e-05 Score=51.40 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=54.9
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccH----HHHHhCCC--ccccEEEEEeCCeEEEEeeCCCCHH
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK----DLAKEYNI--LAYPTLYLFVAGVRQFQFFGERTRD 150 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v--~~~Pt~~~~~~g~~~~~~~g~~~~~ 150 (304)
++.|..+||++|++....++++..+.. ++.+..+|.+.+. ++.+..|- ..+|++++ +|+. .|. .+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~----igG--~~ 72 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKH----VGG--CT 72 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEE----ecC--HH
Confidence 577899999999999999988876554 5778888887533 46666663 78999954 6632 343 36
Q ss_pred HHHHHHHHHhC
Q 021976 151 VISAWVREKMT 161 (304)
Q Consensus 151 ~l~~~i~~~~~ 161 (304)
+|.++++++.+
T Consensus 73 dl~~~~~~~~~ 83 (86)
T TIGR02183 73 DFEQLVKENFD 83 (86)
T ss_pred HHHHHHHhccc
Confidence 78888877553
No 229
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.90 E-value=0.00011 Score=61.94 Aligned_cols=82 Identities=15% Similarity=0.200 Sum_probs=59.4
Q ss_pred CCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeC---------------------------------------
Q 021976 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA--------------------------------------- 113 (304)
Q Consensus 73 ~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~--------------------------------------- 113 (304)
.+.+++.|..+.|++|+++++.+.++.+. +++.+..+-.
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 35689999999999999999988775543 1232222210
Q ss_pred -----------cccHHHHHhCCCccccEEEEEe-CCeEEEEeeCCCCHHHHHHHHH
Q 021976 114 -----------YLEKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVR 157 (304)
Q Consensus 114 -----------~~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~ 157 (304)
+++.++.+++||+++|++++-+ +| .+....|..+.++|.+.+.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHhC
Confidence 1123477889999999998887 46 6667889999999988774
No 230
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.89 E-value=0.0021 Score=60.38 Aligned_cols=170 Identities=11% Similarity=0.019 Sum_probs=114.6
Q ss_pred CCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeE-EEEeeCCCCHHH
Q 021976 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR-QFQFFGERTRDV 151 (304)
Q Consensus 73 ~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~-~~~~~g~~~~~~ 151 (304)
+++.++.| .+.|..|.++...++++++.-+ ++.+-..+.. ...|++.+.++|+. -.+|.|...-.+
T Consensus 19 ~~v~~~~~-~~~~~~~~~~~~~~~~~~~~s~-~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g~E 85 (517)
T PRK15317 19 RPIELVAS-LDDSEKSAELKELLEEIASLSD-KITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMGHE 85 (517)
T ss_pred CCEEEEEE-eCCCchHHHHHHHHHHHHHhCC-ceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCccHH
Confidence 34445555 4579999999999999988765 5655442211 24799999876643 478999888888
Q ss_pred HHHHHHHHhC--CCceecCCHHHHHHhhcc-CCeEEEEEecCCCCccHHH---HHHHhccCCceeEE---EecCHHHHhh
Q 021976 152 ISAWVREKMT--LGTYSITTTDEAERILTV-ESKLVLGFLHDLEGMESEE---LAAASKLHSDVNFY---QTTSADVAEF 222 (304)
Q Consensus 152 l~~~i~~~~~--~~~~~l~~~~~~~~~~~~-~~~~~v~f~~~~~~~~~~~---~~~~a~~~~~~~f~---~~~~~~l~~~ 222 (304)
+..|+..... .+-..+ +++..+.+.+- .+..+..|..+.|..+... +..++....++.+. ....++++++
T Consensus 86 f~s~i~~i~~~~~~~~~l-~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~ 164 (517)
T PRK15317 86 FTSLVLALLQVGGHPPKL-DQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEA 164 (517)
T ss_pred HHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHh
Confidence 8888877653 233333 44444444432 4556777899888875543 34444455566544 3478899999
Q ss_pred cCCCCCCCCCeEEEEecCCCceecccCCCCHHHHHHHHhcCC
Q 021976 223 FHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTK 264 (304)
Q Consensus 223 ~~i~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi~~~~ 264 (304)
|++.+ .|++++ + + ...+.|..+.+++.+.+....
T Consensus 165 ~~v~~---VP~~~i-~-~---~~~~~g~~~~~~~~~~~~~~~ 198 (517)
T PRK15317 165 RNIMA---VPTVFL-N-G---EEFGQGRMTLEEILAKLDTGA 198 (517)
T ss_pred cCCcc---cCEEEE-C-C---cEEEecCCCHHHHHHHHhccc
Confidence 99997 999874 2 2 245778888888888887643
No 231
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.85 E-value=0.00015 Score=68.11 Aligned_cols=95 Identities=19% Similarity=0.165 Sum_probs=76.2
Q ss_pred cChhcHHHHhcC-CCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeE
Q 021976 61 LNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR 139 (304)
Q Consensus 61 l~~~~~~~~~~~-~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 139 (304)
|+++..+.+-.= ++.-+-.|.+++|++|......+++++...+ .+..-.||..+.++++++|+|.++|++++ +|+
T Consensus 103 l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~- 178 (517)
T PRK15317 103 LDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGALFQDEVEARNIMAVPTVFL--NGE- 178 (517)
T ss_pred CCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchhCHhHHHhcCCcccCEEEE--CCc-
Confidence 444444433322 3445888999999999999999999999766 89999999999999999999999999966 663
Q ss_pred EEEeeCCCCHHHHHHHHHHHh
Q 021976 140 QFQFFGERTRDVISAWVREKM 160 (304)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~~~ 160 (304)
..+.|..+.+++.+.+.+..
T Consensus 179 -~~~~g~~~~~~~~~~~~~~~ 198 (517)
T PRK15317 179 -EFGQGRMTLEEILAKLDTGA 198 (517)
T ss_pred -EEEecCCCHHHHHHHHhccc
Confidence 35779999988888887644
No 232
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.83 E-value=5.5e-05 Score=63.38 Aligned_cols=99 Identities=17% Similarity=0.263 Sum_probs=76.5
Q ss_pred HHHHHHhhccCCeEEEEEecCCCCc---cHHHHHHHh-cc-----CCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEE
Q 021976 170 TDEAERILTVESKLVLGFLHDLEGM---ESEELAAAS-KL-----HSDVNFYQT---TSADVAEFFHIHPKSKRPALIFL 237 (304)
Q Consensus 170 ~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a-~~-----~~~~~f~~~---~~~~l~~~~~i~~~~~~P~lv~~ 237 (304)
.++++..+++.+.++|.||++||.- ....|.++| .+ .+++.++.+ ....++++|.|.. |||+-+|
T Consensus 3 ~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~K---yPTlKvf 79 (375)
T KOG0912|consen 3 SENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINK---YPTLKVF 79 (375)
T ss_pred cccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhcccc---Cceeeee
Confidence 4567888888999999999999963 444555544 22 256666654 6778999999995 9999999
Q ss_pred ecCCCceecccCCCCHHHHHHHHhcCCCCcEEee
Q 021976 238 HLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTL 271 (304)
Q Consensus 238 ~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~~~~l 271 (304)
+.|..-.-.|.|.++.+.+.+||++..--.+.++
T Consensus 80 rnG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef 113 (375)
T KOG0912|consen 80 RNGEMMKREYRGQRSVEALIEFIEKQLSDPINEF 113 (375)
T ss_pred eccchhhhhhccchhHHHHHHHHHHHhccHHHHH
Confidence 9997667789999999999999997654444443
No 233
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.83 E-value=0.00036 Score=54.65 Aligned_cols=82 Identities=20% Similarity=0.333 Sum_probs=64.0
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHh--hCCcEEEEEeCccc---------------------------------
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKML--KGEADLVMVDAYLE--------------------------------- 116 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~--~~~~~~~~vd~~~~--------------------------------- 116 (304)
+.+++++.|+...|++|+++.+.+.++.+++ ++++.+...+....
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 4578999999999999999999999999998 66777777764100
Q ss_pred -----------------------------------HHHHHhCCCccccEEEEEeCCeEEEEeeCCCCHHHHHHHHHH
Q 021976 117 -----------------------------------KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158 (304)
Q Consensus 117 -----------------------------------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 158 (304)
...++++||.++||+++ +|+. +.|..+.+++.+.|.+
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~---~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY---VVGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE---EETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE---eCCCCCHHHHHHHHcC
Confidence 02456679999999988 8854 5889999999998864
No 234
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.83 E-value=0.00016 Score=46.48 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=41.6
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHH----HhCCCccccEEEEEeCCe
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA----KEYNILAYPTLYLFVAGV 138 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~g~ 138 (304)
++.|..+||++|++....+++ . ++.+-.+|++.+++.. +..|..++|++++ +|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~----~--~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~ 58 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE----K--GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGK 58 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH----T--TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTE
T ss_pred cEEEEcCCCcCHHHHHHHHHH----c--CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCE
Confidence 477999999999999877732 2 5888999998875433 3349999999986 664
No 235
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00028 Score=51.05 Aligned_cols=79 Identities=14% Similarity=0.256 Sum_probs=58.9
Q ss_pred CCeEEEEEecCCCCc---cHHHHHHHhccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecCCCceecccCCCCH
Q 021976 180 ESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTR 253 (304)
Q Consensus 180 ~~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~~~~ 253 (304)
+..+++.|+++||+| ....+..++....++.|..+ ...++++.+++.. .|++++|+.++ ....+-|. +.
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~---~PTf~f~k~g~-~~~~~vGa-~~ 95 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKA---MPTFVFYKGGE-EVDEVVGA-NK 95 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceE---eeEEEEEECCE-EEEEEecC-CH
Confidence 577888899999998 46667778754455777744 3589999999997 99999998876 55555553 45
Q ss_pred HHHHHHHhcC
Q 021976 254 LAIANFVTHT 263 (304)
Q Consensus 254 ~~i~~fi~~~ 263 (304)
+.+.+.|.++
T Consensus 96 ~~l~~~i~~~ 105 (106)
T KOG0907|consen 96 AELEKKIAKH 105 (106)
T ss_pred HHHHHHHHhc
Confidence 5777776654
No 236
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.77 E-value=0.00025 Score=53.12 Aligned_cols=90 Identities=11% Similarity=0.097 Sum_probs=65.7
Q ss_pred HHHHHHhhccC-CeEEEEEecCCCCccHHHHH------HHh-ccCCceeEEEe---c-------------CHHHHhhcCC
Q 021976 170 TDEAERILTVE-SKLVLGFLHDLEGMESEELA------AAS-KLHSDVNFYQT---T-------------SADVAEFFHI 225 (304)
Q Consensus 170 ~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~~~------~~a-~~~~~~~f~~~---~-------------~~~l~~~~~i 225 (304)
.++++..+++. ++++|.|+++||.++...-. .+. .+..++.+..+ . ..+++++|++
T Consensus 3 ~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 3 YEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 45677788888 89999999999988654432 222 23334444322 2 3689999999
Q ss_pred CCCCCCCeEEEEecC-CCceecccCCCCHHHHHHHHhc
Q 021976 226 HPKSKRPALIFLHLE-AGKATPFRHQFTRLAIANFVTH 262 (304)
Q Consensus 226 ~~~~~~P~lv~~~~~-~~~~~~y~g~~~~~~i~~fi~~ 262 (304)
.. .|+++++.++ ++....+.|..+.+.+..+|+.
T Consensus 83 ~~---~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~ 117 (125)
T cd02951 83 RF---TPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEY 117 (125)
T ss_pred cc---ccEEEEEcCCCCceeEEecCCCCHHHHHHHHHH
Confidence 96 9999999987 5667788898888888888875
No 237
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.77 E-value=0.00052 Score=49.89 Aligned_cols=88 Identities=20% Similarity=0.340 Sum_probs=59.8
Q ss_pred HHHHHhhc--cCCeEEEEEecCCCCcc---HHHHHHHhc-cCCceeEEE---ecCHHHHhhcCCCCCCCCCeEEEEecCC
Q 021976 171 DEAERILT--VESKLVLGFLHDLEGME---SEELAAASK-LHSDVNFYQ---TTSADVAEFFHIHPKSKRPALIFLHLEA 241 (304)
Q Consensus 171 ~~~~~~~~--~~~~~~v~f~~~~~~~~---~~~~~~~a~-~~~~~~f~~---~~~~~l~~~~~i~~~~~~P~lv~~~~~~ 241 (304)
+++++.+. ++..++|-|+++||+|+ .+.+.++|. +...+.|+. ...+++++.|++.. .|++++|+++.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~a---mPtfvffkngk 79 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISY---IPSTIFFFNGQ 79 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCcee---CcEEEEEECCc
Confidence 34555444 47788888999999984 455777774 443366664 47889999999986 89999999875
Q ss_pred Cceeccc-C-------CC-CHHHHHHHHh
Q 021976 242 GKATPFR-H-------QF-TRLAIANFVT 261 (304)
Q Consensus 242 ~~~~~y~-g-------~~-~~~~i~~fi~ 261 (304)
.-...|- | .+ +.+++.+-|+
T Consensus 80 h~~~d~gt~~~~k~~~~~~~k~~~idi~e 108 (114)
T cd02986 80 HMKVDYGSPDHTKFVGSFKTKQDFIDLIE 108 (114)
T ss_pred EEEEecCCCCCcEEEEEcCchhHHHHHHH
Confidence 3333331 2 12 4466666554
No 238
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.76 E-value=0.00041 Score=51.92 Aligned_cols=92 Identities=10% Similarity=0.038 Sum_probs=66.6
Q ss_pred CHHHHHHhhccCCeEEEEEecCCC-----CccHHHHHHHh-ccC-CceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEe
Q 021976 169 TTDEAERILTVESKLVLGFLHDLE-----GMESEELAAAS-KLH-SDVNFYQT---TSADVAEFFHIHPKSKRPALIFLH 238 (304)
Q Consensus 169 ~~~~~~~~~~~~~~~~v~f~~~~~-----~~~~~~~~~~a-~~~-~~~~f~~~---~~~~l~~~~~i~~~~~~P~lv~~~ 238 (304)
+..+++.++......++.+-.+.. ....-.+.+++ ++. .+++++.+ .+++++.+|||.+ .|++++|+
T Consensus 23 ~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~s---iPTLl~Fk 99 (132)
T PRK11509 23 SESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFR---FPATLVFT 99 (132)
T ss_pred ccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCcc---CCEEEEEE
Confidence 347788888877776665433221 12455566666 454 34777754 7899999999997 99999999
Q ss_pred cCCCceecccCCCCHHHHHHHHhcCC
Q 021976 239 LEAGKATPFRHQFTRLAIANFVTHTK 264 (304)
Q Consensus 239 ~~~~~~~~y~g~~~~~~i~~fi~~~~ 264 (304)
++. ..-...|..+.+.+.+||.+..
T Consensus 100 dGk-~v~~i~G~~~k~~l~~~I~~~L 124 (132)
T PRK11509 100 GGN-YRGVLNGIHPWAELINLMRGLV 124 (132)
T ss_pred CCE-EEEEEeCcCCHHHHHHHHHHHh
Confidence 885 5567778889999999998754
No 239
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.74 E-value=0.001 Score=48.44 Aligned_cols=95 Identities=15% Similarity=0.179 Sum_probs=65.6
Q ss_pred CHHHHHHhhccCCeEEEEEec-CCCCc---cHHHHH-HHhccCCceeEEEe--------cCHHHHhhcCCCCCCCCCeEE
Q 021976 169 TTDEAERILTVESKLVLGFLH-DLEGM---ESEELA-AASKLHSDVNFYQT--------TSADVAEFFHIHPKSKRPALI 235 (304)
Q Consensus 169 ~~~~~~~~~~~~~~~~v~f~~-~~~~~---~~~~~~-~~a~~~~~~~f~~~--------~~~~l~~~~~i~~~~~~P~lv 235 (304)
+.-++++.+...+.++|-|=. -.-+. ....++ +.+.-..+.-++.+ .|.+|+++|++.. .++|.+.
T Consensus 10 D~~tFdKvi~kf~~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k-e~fPv~~ 88 (126)
T PF07912_consen 10 DELTFDKVIPKFKYVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK-EDFPVIY 88 (126)
T ss_dssp STTHHHHHGGGSSEEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC-CC-SEEE
T ss_pred cceehhheeccCceEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc-ccCCEEE
Confidence 345688889888888888721 11122 444455 33345566666643 6889999999974 3589999
Q ss_pred EEecCCCceecc--cCCCCHHHHHHHHhcCC
Q 021976 236 FLHLEAGKATPF--RHQFTRLAIANFVTHTK 264 (304)
Q Consensus 236 ~~~~~~~~~~~y--~g~~~~~~i~~fi~~~~ 264 (304)
+|..+...++.| +|+++.++|++|+.++.
T Consensus 89 LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t 119 (126)
T PF07912_consen 89 LFVGDKEEPVRYPFDGDVTADNLQRFVKSNT 119 (126)
T ss_dssp EEESSTTSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred EecCCCCCCccCCccCCccHHHHHHHHHhCC
Confidence 999777789989 88999999999999884
No 240
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.74 E-value=0.00027 Score=48.29 Aligned_cols=58 Identities=14% Similarity=0.234 Sum_probs=43.1
Q ss_pred CCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCccc---HHHHHhCCCccccEEEEEeCCe
Q 021976 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE---KDLAKEYNILAYPTLYLFVAGV 138 (304)
Q Consensus 73 ~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~v~~~Pt~~~~~~g~ 138 (304)
.+.-++.|..+||++|++....+++. ++.+-.+|++++ ..+.+..|...+|++++ +|+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~ 66 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGK 66 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCE
Confidence 34457789999999999998888632 567777888765 34555568899999964 774
No 241
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.68 E-value=0.00013 Score=50.09 Aligned_cols=56 Identities=18% Similarity=0.335 Sum_probs=41.8
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccH-----HHHHhCCCccccEEEEEeCCe
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----DLAKEYNILAYPTLYLFVAGV 138 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~g~ 138 (304)
++.|+++||++|+...+.++++.. ...+..++.+.+. .+.+..|+.++|++ |.+|+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~ 62 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGK 62 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence 577999999999999999988765 3456777766542 34456788999997 44674
No 242
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.67 E-value=0.0006 Score=50.20 Aligned_cols=91 Identities=10% Similarity=0.052 Sum_probs=60.2
Q ss_pred CceecCCHHHHHHhhcc-CCeEEEEEecCCCCcc---HHHHHHHhc-cC---CceeEEEe-----cCHHHHhhcCCCCCC
Q 021976 163 GTYSITTTDEAERILTV-ESKLVLGFLHDLEGME---SEELAAASK-LH---SDVNFYQT-----TSADVAEFFHIHPKS 229 (304)
Q Consensus 163 ~~~~l~~~~~~~~~~~~-~~~~~v~f~~~~~~~~---~~~~~~~a~-~~---~~~~f~~~-----~~~~l~~~~~i~~~~ 229 (304)
++.++ +.+++++.+.+ +.+++|.|+.+||.++ ...+..++. +. +.+.|+.+ .+++++++|++++
T Consensus 2 ~v~~l-~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~-- 78 (114)
T cd02992 2 PVIVL-DAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTG-- 78 (114)
T ss_pred CeEEC-CHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCC--
Confidence 34555 45667766654 4589999999999863 344555542 32 34666643 3567999999997
Q ss_pred CCCeEEEEecCCC---ceecccCC-CCHHHHH
Q 021976 230 KRPALIFLHLEAG---KATPFRHQ-FTRLAIA 257 (304)
Q Consensus 230 ~~P~lv~~~~~~~---~~~~y~g~-~~~~~i~ 257 (304)
+|++++|+++.. .-..|+|. +..++++
T Consensus 79 -~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02992 79 -YPTLRYFPPFSKEATDGLKQEGPERDVNELR 109 (114)
T ss_pred -CCEEEEECCCCccCCCCCcccCCccCHHHHH
Confidence 999999988752 22566665 5556554
No 243
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.67 E-value=0.0007 Score=52.42 Aligned_cols=85 Identities=16% Similarity=0.183 Sum_probs=57.0
Q ss_pred CceecCCHHHHHHhhcc--CCeEEEEEecCCCCcc---HHHHHHHh-ccC-CceeEEEe---cCHHHHhhcCCCC---CC
Q 021976 163 GTYSITTTDEAERILTV--ESKLVLGFLHDLEGME---SEELAAAS-KLH-SDVNFYQT---TSADVAEFFHIHP---KS 229 (304)
Q Consensus 163 ~~~~l~~~~~~~~~~~~--~~~~~v~f~~~~~~~~---~~~~~~~a-~~~-~~~~f~~~---~~~~l~~~~~i~~---~~ 229 (304)
.+.++ +.+++++.+.. ...++|.|+.+||.++ ...+.+++ ++. .++.|+.+ .+++++++|+++. -.
T Consensus 29 ~v~~l-~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~ 107 (152)
T cd02962 29 HIKYF-TPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107 (152)
T ss_pred ccEEc-CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence 34555 34677777643 4578999999999874 34555665 343 24666654 6889999999973 12
Q ss_pred CCCeEEEEecCCCceecccC
Q 021976 230 KRPALIFLHLEAGKATPFRH 249 (304)
Q Consensus 230 ~~P~lv~~~~~~~~~~~y~g 249 (304)
++|++++|+.+. ...++.|
T Consensus 108 ~~PT~ilf~~Gk-~v~r~~G 126 (152)
T cd02962 108 QLPTIILFQGGK-EVARRPY 126 (152)
T ss_pred CCCEEEEEECCE-EEEEEec
Confidence 389999999664 4444443
No 244
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=97.66 E-value=0.00038 Score=48.51 Aligned_cols=83 Identities=11% Similarity=0.166 Sum_probs=62.3
Q ss_pred ceecCCHHHHHHhhccCCeEEEEEecCCCCccHHHHHHHh-ccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecC-C
Q 021976 164 TYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLE-A 241 (304)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~P~lv~~~~~-~ 241 (304)
++++.+.+++.. ++.++..+|+||....++.+..|..+| .++.++.|.....+.. ....-. .+..++|++. .
T Consensus 1 Ikef~~~~eL~~-id~~kr~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~~G~~~-~~~~~~----~~~~i~frp~~~ 74 (91)
T cd03070 1 IKEFRNLDELNN-VDRSKRNIIGYFESKDSDEYDNFRKVANILRDDCSFLVGFGDVT-KPERPP----GDNIIYFPPGHN 74 (91)
T ss_pred CceecCHHHHHh-hCcCCceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEEecccc-ccccCC----CCCeEEECCCCC
Confidence 356777888887 666788999999999999999999998 6999999998776655 222222 2445667776 5
Q ss_pred CceecccCCCC
Q 021976 242 GKATPFRHQFT 252 (304)
Q Consensus 242 ~~~~~y~g~~~ 252 (304)
.....|.|+.+
T Consensus 75 ~~~~~y~G~~t 85 (91)
T cd03070 75 APDMVYLGSLT 85 (91)
T ss_pred CCceEEccCCC
Confidence 56688999873
No 245
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.64 E-value=0.00035 Score=46.77 Aligned_cols=66 Identities=11% Similarity=0.095 Sum_probs=47.9
Q ss_pred EEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhC---CCccccEEEEEeCCeEEEEeeCCCCHHHHHH
Q 021976 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY---NILAYPTLYLFVAGVRQFQFFGERTRDVISA 154 (304)
Q Consensus 78 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~---~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 154 (304)
..|..++|++|++....+++ .++.+-.+|+++++...+.+ |..++|++++ +|+ ..-|..+.+.|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~---~~~~G~~~~~~~~ 70 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD---LSWSGFRPDKLKA 70 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC---cEEeccCHHHHHh
Confidence 56788999999999888764 26888889998887655544 8889999755 442 2344566666654
No 246
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.61 E-value=0.01 Score=55.72 Aligned_cols=170 Identities=14% Similarity=0.095 Sum_probs=113.1
Q ss_pred CCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCe-EEEEeeCCCCHHH
Q 021976 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV-RQFQFFGERTRDV 151 (304)
Q Consensus 73 ~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~g~~~~~~ 151 (304)
+.+.++.|.. -|..|.++...++++++.-+ ++.+...+.+. ...|++.+..+|+ .-.+|.|...-.+
T Consensus 19 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~-ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f~g~P~g~E 86 (515)
T TIGR03140 19 NPVTLVLSAG-SHEKSKELLELLDEIASLSD-KISLTQNTADT----------LRKPSFTILRDGADTGIRFAGIPGGHE 86 (515)
T ss_pred CCEEEEEEeC-CCchhHHHHHHHHHHHHhCC-CeEEEEecCCc----------CCCCeEEEecCCcccceEEEecCCcHH
Confidence 4445555555 69999999999999988765 66664444222 3469998887764 4578999888888
Q ss_pred HHHHHHHHhC--CCceecCCHHHHHHhhcc-CCeEEEEEecCCCCccHHH---HHHHhccCCceeEE---EecCHHHHhh
Q 021976 152 ISAWVREKMT--LGTYSITTTDEAERILTV-ESKLVLGFLHDLEGMESEE---LAAASKLHSDVNFY---QTTSADVAEF 222 (304)
Q Consensus 152 l~~~i~~~~~--~~~~~l~~~~~~~~~~~~-~~~~~v~f~~~~~~~~~~~---~~~~a~~~~~~~f~---~~~~~~l~~~ 222 (304)
+..|+..... .+-..+ +++..+.+.+- .+..+..|..+.|..+... +..++....++... ....+++.++
T Consensus 87 f~s~i~~i~~~~~~~~~l-~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~ 165 (515)
T TIGR03140 87 FTSLVLAILQVGGHGPKL-DEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEA 165 (515)
T ss_pred HHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHh
Confidence 8888776542 223344 44444444432 4556777888888776543 33344444555544 3478899999
Q ss_pred cCCCCCCCCCeEEEEecCCCceecccCCCCHHHHHHHHhcC
Q 021976 223 FHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (304)
Q Consensus 223 ~~i~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 263 (304)
|++.. .|++++ + + ...+.|..+.+++.+.+...
T Consensus 166 ~~v~~---VP~~~i-~-~---~~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 166 LGIQG---VPAVFL-N-G---EEFHNGRMDLAELLEKLEET 198 (515)
T ss_pred cCCcc---cCEEEE-C-C---cEEEecCCCHHHHHHHHhhc
Confidence 99997 999875 2 1 24577888888887777644
No 247
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.55 E-value=0.00036 Score=46.23 Aligned_cols=57 Identities=14% Similarity=0.244 Sum_probs=41.3
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHH----HHhCCCccccEEEEEeCCeEEE
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL----AKEYNILAYPTLYLFVAGVRQF 141 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~~ 141 (304)
++.|+++||++|++..+.+.+.. +.+..+|.+.+++. .+..|...+|+++ .+|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIF--INGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEEe
Confidence 56789999999999998887653 66778888876643 3345777888774 4774433
No 248
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.51 E-value=0.00034 Score=48.06 Aligned_cols=79 Identities=15% Similarity=0.181 Sum_probs=60.5
Q ss_pred EEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeC--CeEEEEeeCCCCHHHHH
Q 021976 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA--GVRQFQFFGERTRDVIS 153 (304)
Q Consensus 76 ~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~--g~~~~~~~g~~~~~~l~ 153 (304)
.++.|..+.|+-|......+.++.... .+.+-.||+++++++.++|+. .+|.+.+-.. ........+..+.+.+.
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~ 77 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLR 77 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHH
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHH
Confidence 378899999999999998888866554 589999999999999999995 7999766331 11135566789999999
Q ss_pred HHHH
Q 021976 154 AWVR 157 (304)
Q Consensus 154 ~~i~ 157 (304)
+||+
T Consensus 78 ~~L~ 81 (81)
T PF05768_consen 78 AWLE 81 (81)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9985
No 249
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.49 E-value=0.0011 Score=62.13 Aligned_cols=96 Identities=14% Similarity=0.124 Sum_probs=76.1
Q ss_pred EEcChhcHHHHhc-CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCC
Q 021976 59 VSLNGKNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG 137 (304)
Q Consensus 59 ~~l~~~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 137 (304)
..++++..+.+-. +++.-+-.|.++.|++|......+++++...+ ++..-.+|..+.++++++|++.++|++++ +|
T Consensus 102 ~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~ 178 (515)
T TIGR03140 102 PKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPAVFL--NG 178 (515)
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcccCEEEE--CC
Confidence 3344554444432 23445888999999999999999999998877 78899999999999999999999999976 55
Q ss_pred eEEEEeeCCCCHHHHHHHHHHH
Q 021976 138 VRQFQFFGERTRDVISAWVREK 159 (304)
Q Consensus 138 ~~~~~~~g~~~~~~l~~~i~~~ 159 (304)
+ ..+.|..+.+++.+.+.+.
T Consensus 179 ~--~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 179 E--EFHNGRMDLAELLEKLEET 198 (515)
T ss_pred c--EEEecCCCHHHHHHHHhhc
Confidence 3 3477988988888777655
No 250
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.49 E-value=0.0021 Score=44.11 Aligned_cols=72 Identities=11% Similarity=0.165 Sum_probs=52.7
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHH---HhCCCccccEEEEEeCCeEEEEeeCCCCHHHHH
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA---KEYNILAYPTLYLFVAGVRQFQFFGERTRDVIS 153 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~---~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 153 (304)
++.|..+||++|++....+++ .++.|-.+|++++++.. +..|...+|++++ ++. . .+..+.+.|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~-~~Gf~~~~l~ 70 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---S-WSGFRPDMIN 70 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---E-EecCCHHHHH
Confidence 567889999999998877744 26889999998877643 3457788999965 442 2 3357888888
Q ss_pred HHHHHHh
Q 021976 154 AWVREKM 160 (304)
Q Consensus 154 ~~i~~~~ 160 (304)
+.+....
T Consensus 71 ~~~~~~~ 77 (81)
T PRK10329 71 RLHPAPH 77 (81)
T ss_pred HHHHhhh
Confidence 8876554
No 251
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.48 E-value=0.00093 Score=53.20 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=32.7
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEE
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLV 109 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~ 109 (304)
++++.++.|+...|++|+.+.+.+.++.+++++++.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 57889999999999999999999999999886655443
No 252
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.47 E-value=0.0028 Score=45.55 Aligned_cols=91 Identities=9% Similarity=0.134 Sum_probs=69.9
Q ss_pred ChhcHHHHhc-CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeC-CeE
Q 021976 62 NGKNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA-GVR 139 (304)
Q Consensus 62 ~~~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~-g~~ 139 (304)
+.+++++.+. ++..++|-|+..--. .....|.++|+.+...+.|+... +.++.+.+++. .|+++++++ ...
T Consensus 7 ~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~e~ 79 (102)
T cd03066 7 SERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFYEPFMEE 79 (102)
T ss_pred CHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEeCCCCCC
Confidence 4566888888 788888888876443 45678999999997778886654 55677888775 788999975 444
Q ss_pred EEEe-eCCCCHHHHHHHHHHH
Q 021976 140 QFQF-FGERTRDVISAWVREK 159 (304)
Q Consensus 140 ~~~~-~g~~~~~~l~~~i~~~ 159 (304)
...| .|..+.+.|.+||...
T Consensus 80 ~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 80 PVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CcccCCCCCCHHHHHHHHHHh
Confidence 5678 7888999999999754
No 253
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.41 E-value=0.0021 Score=47.93 Aligned_cols=91 Identities=11% Similarity=0.043 Sum_probs=59.6
Q ss_pred CHHHHHHhhccCCeEEEEEecCCCCcc---HHHHHHHhccCCceeEEE--ec-C-----------HHHHhhcCCCC-CCC
Q 021976 169 TTDEAERILTVESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQ--TT-S-----------ADVAEFFHIHP-KSK 230 (304)
Q Consensus 169 ~~~~~~~~~~~~~~~~v~f~~~~~~~~---~~~~~~~a~~~~~~~f~~--~~-~-----------~~l~~~~~i~~-~~~ 230 (304)
+.+++.+.+++.+..+|.|+.+||+++ .+.+..+++. .+..++. +. + .++.+.|++.. -.+
T Consensus 12 t~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 90 (122)
T TIGR01295 12 TVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMG 90 (122)
T ss_pred CHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCC
Confidence 567888888888888999999999874 3445555532 3333332 22 1 14556666431 124
Q ss_pred CCeEEEEecCCCceecccC-CCCHHHHHHHHh
Q 021976 231 RPALIFLHLEAGKATPFRH-QFTRLAIANFVT 261 (304)
Q Consensus 231 ~P~lv~~~~~~~~~~~y~g-~~~~~~i~~fi~ 261 (304)
.|++++|+++. ..-...| ..+.++|.+|+.
T Consensus 91 ~PT~v~~k~Gk-~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 91 TPTFVHITDGK-QVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCEEEEEeCCe-EEEEEeCCCCCHHHHHHHhh
Confidence 89999999886 3344556 457899998874
No 254
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.39 E-value=0.00074 Score=48.31 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=36.6
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHH-------HHHhCCCccccEEEEEeCCe
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD-------LAKEYNILAYPTLYLFVAGV 138 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-------~~~~~~v~~~Pt~~~~~~g~ 138 (304)
++.|..+|||+|++....+.+. ++.+..+|++++++ +.+..|...+|+++ -+|+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf--i~g~ 70 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF--VGGK 70 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE--ECCE
Confidence 6678999999999988766653 34455666655432 33334678999984 4773
No 255
>PHA03050 glutaredoxin; Provisional
Probab=97.35 E-value=0.00065 Score=49.36 Aligned_cols=66 Identities=11% Similarity=0.139 Sum_probs=43.5
Q ss_pred HHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcc---c----HHHHHhCCCccccEEEEEeCCe
Q 021976 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL---E----KDLAKEYNILAYPTLYLFVAGV 138 (304)
Q Consensus 66 ~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~---~----~~~~~~~~v~~~Pt~~~~~~g~ 138 (304)
.++.+++++ ++.|..+|||+|++....+++..-..+ .+-.+|+++ . ..+.+.-|.+.+|++++ +|+
T Consensus 6 v~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~ 78 (108)
T PHA03050 6 VQQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKT 78 (108)
T ss_pred HHHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCE
Confidence 345555544 667999999999999888877543222 355555554 2 23555568889999954 674
No 256
>PTZ00062 glutaredoxin; Provisional
Probab=97.32 E-value=0.0021 Score=52.26 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=65.4
Q ss_pred CCHHHHHHhhccC-CeEEEEEecCCCCcc---HHHHHHHhccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCCCc
Q 021976 168 TTTDEAERILTVE-SKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGK 243 (304)
Q Consensus 168 ~~~~~~~~~~~~~-~~~~v~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~~~~~l~~~~~i~~~~~~P~lv~~~~~~~~ 243 (304)
.+.+++.+.++++ ...++.|.++||.++ ...+.++++-..++.|..+... |+|.+ .|++++|+++. .
T Consensus 4 ~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-----~~V~~---vPtfv~~~~g~-~ 74 (204)
T PTZ00062 4 IKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-----DANNE---YGVFEFYQNSQ-L 74 (204)
T ss_pred CCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-----cCccc---ceEEEEEECCE-E
Confidence 4677888888754 667777779999885 4446666655578999988654 99997 99999999775 4
Q ss_pred eecccCCCCHHHHHHHHhcCCC
Q 021976 244 ATPFRHQFTRLAIANFVTHTKH 265 (304)
Q Consensus 244 ~~~y~g~~~~~~i~~fi~~~~~ 265 (304)
.-++.|. +...|..++.++.-
T Consensus 75 i~r~~G~-~~~~~~~~~~~~~~ 95 (204)
T PTZ00062 75 INSLEGC-NTSTLVSFIRGWAQ 95 (204)
T ss_pred EeeeeCC-CHHHHHHHHHHHcC
Confidence 5566664 67788888876554
No 257
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.32 E-value=0.00069 Score=46.21 Aligned_cols=54 Identities=7% Similarity=0.267 Sum_probs=39.5
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHH----HhCCCccccEEEEEeCCe
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA----KEYNILAYPTLYLFVAGV 138 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~g~ 138 (304)
++.|+.+||++|++....+++. ++.+-.+|++.+++.. +..|..++|++++ +|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~ 58 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDV 58 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence 3568899999999999888752 4667777777765443 3347888999844 674
No 258
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.30 E-value=0.0012 Score=44.43 Aligned_cols=54 Identities=11% Similarity=0.202 Sum_probs=39.8
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHH----hCCCc-cccEEEEEeCCe
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAK----EYNIL-AYPTLYLFVAGV 138 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~----~~~v~-~~Pt~~~~~~g~ 138 (304)
++.|..+||++|++....+++. ++.+-.+|++.+++..+ ..|.. ++|+++ -+|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCE
Confidence 5678899999999998877652 57788888887654433 35766 899874 3674
No 259
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.29 E-value=0.0035 Score=41.82 Aligned_cols=66 Identities=11% Similarity=0.225 Sum_probs=45.7
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHH---HHHhCCCccccEEEEEeCCeEEEEeeCCCCHHHHH
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD---LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVIS 153 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 153 (304)
++.|..+||+.|.+....+++. ++.+-.+|++++.. +.+..|...+|.++ -+|+. .| ..+++.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~----ig--g~~~l~ 68 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGEL----IG--GSDDLE 68 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEE----Ee--CHHHHH
Confidence 6778999999999998777642 56777778776542 33345888999984 46743 23 246666
Q ss_pred HHH
Q 021976 154 AWV 156 (304)
Q Consensus 154 ~~i 156 (304)
+|+
T Consensus 69 ~~l 71 (72)
T cd03029 69 KYF 71 (72)
T ss_pred HHh
Confidence 664
No 260
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.28 E-value=0.0047 Score=44.58 Aligned_cols=90 Identities=23% Similarity=0.374 Sum_probs=68.1
Q ss_pred ChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeC-----
Q 021976 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA----- 136 (304)
Q Consensus 62 ~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~----- 136 (304)
+.+++++.+..++.++|-|+..--. .....+.++|+.+.+...|+... +..+.+.+++ .|++++|+.
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~~~~ 78 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLFRPPRLSN 78 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEEechhhhc
Confidence 3466777787888888888877433 46778999999997778887765 4577888988 688888832
Q ss_pred --CeEEEEeeCCCCHHHHHHHHHHH
Q 021976 137 --GVRQFQFFGERTRDVISAWVREK 159 (304)
Q Consensus 137 --g~~~~~~~g~~~~~~l~~~i~~~ 159 (304)
......|.|..+.+.|.+||...
T Consensus 79 k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 79 KFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred ccCcccccccCcCCHHHHHHHHHhh
Confidence 12335699998999999999764
No 261
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.23 E-value=0.12 Score=44.85 Aligned_cols=182 Identities=11% Similarity=0.080 Sum_probs=111.9
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEe--CCeEEEEeeCCCCH
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV--AGVRQFQFFGERTR 149 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~--~g~~~~~~~g~~~~ 149 (304)
+..+-+|-|+-+--+. ....|+++|+.+...+.|.++= ++.++++++.. .=.+-+|. -.+.+..-..+.+.
T Consensus 164 ed~~klIGyFk~~~s~---~yk~FeeAAe~F~p~IkFfAtf---d~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~e 236 (383)
T PF01216_consen 164 EDDIKLIGYFKSEDSE---HYKEFEEAAEHFQPYIKFFATF---DKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYTE 236 (383)
T ss_dssp -SS-EEEEE-SSTTSH---HHHHHHHHHHHCTTTSEEEEE----SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS--H
T ss_pred ccceeEEEEeCCCCcH---HHHHHHHHHHhhcCceeEEEEe---cchhhhhcCcc-ccceeeeccccCCCccCCCCCCCH
Confidence 3468888888775332 3457899999998888877654 78999999997 66777776 23334333447899
Q ss_pred HHHHHHHHHHhCCCceecCCHHHHHHhhcc-CCeEEEEEecCCCCc---cHHHHHHHhc-cC--CceeEEEec-------
Q 021976 150 DVISAWVREKMTLGTYSITTTDEAERILTV-ESKLVLGFLHDLEGM---ESEELAAASK-LH--SDVNFYQTT------- 215 (304)
Q Consensus 150 ~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~-~~~~~v~f~~~~~~~---~~~~~~~~a~-~~--~~~~f~~~~------- 215 (304)
+++.+|++++..+-++.++..+.+..+-+. +...+|+|....... ..+.++++|+ .. ....+.-+.
T Consensus 237 ~e~~~fi~~h~rptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPll 316 (383)
T PF01216_consen 237 EELVEFIEEHKRPTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLL 316 (383)
T ss_dssp HHHHHHHHHT-S-SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHH
T ss_pred HHHHHHHHHhchhHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchh
Confidence 999999999999999999888888888765 456777766543332 3444555552 22 234444332
Q ss_pred CHHHHhhcCCCCCCCCCeEEEEecCCCceecccCC-----CCHHHHHHHHhc
Q 021976 216 SADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQ-----FTRLAIANFVTH 262 (304)
Q Consensus 216 ~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~-----~~~~~i~~fi~~ 262 (304)
-+-+.+.|+|.- ..|.|=+..-.+...+.++-+ -+.+.+.+||.+
T Consensus 317 v~yWE~tF~Idl--~~PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieD 366 (383)
T PF01216_consen 317 VPYWEKTFGIDL--SRPQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIED 366 (383)
T ss_dssp HHHHHHHHTT-T--TS-EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHH
T ss_pred HHHHHhhcCccc--cCCceeEEeccccccchhccCCcccCCcHHHHHHHHHH
Confidence 124678899884 579999998887777766532 167899999985
No 262
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.22 E-value=0.0018 Score=43.44 Aligned_cols=54 Identities=7% Similarity=0.087 Sum_probs=41.1
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHH----HHHhCCCccccEEEEEeCCe
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNILAYPTLYLFVAGV 138 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~ 138 (304)
++.|..+||++|++....+++ .++.+-.+|++++++ +.+..+-..+|++++ +|+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~ 60 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE------KGLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEK 60 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence 567899999999999887775 257788889887664 445557788899844 663
No 263
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.17 E-value=0.0029 Score=51.87 Aligned_cols=39 Identities=10% Similarity=0.257 Sum_probs=31.1
Q ss_pred CCcEEEEEEcCCChhhhhhHHHH---HHHHHHhhCCcEEEEE
Q 021976 73 NRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMV 111 (304)
Q Consensus 73 ~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~v 111 (304)
+++.+|.|+.-.|+||..+.+.+ +.+.+.+++++.+..+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~ 78 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKY 78 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEe
Confidence 46779999999999999999876 7788888765555443
No 264
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.16 E-value=0.0036 Score=59.33 Aligned_cols=97 Identities=14% Similarity=0.174 Sum_probs=67.6
Q ss_pred ceecCCHHHHHHhhc----cCCeEEEEEecCCCCccHHHHH------HHhccCCceeEEE---e----cCHHHHhhcCCC
Q 021976 164 TYSITTTDEAERILT----VESKLVLGFLHDLEGMESEELA------AASKLHSDVNFYQ---T----TSADVAEFFHIH 226 (304)
Q Consensus 164 ~~~l~~~~~~~~~~~----~~~~~~v~f~~~~~~~~~~~~~------~~a~~~~~~~f~~---~----~~~~l~~~~~i~ 226 (304)
...+.+.+++++.++ ++++++|.|+.+||.++...-. ++.+...++.+.. + .+.++.++|++.
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~ 533 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVL 533 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCC
Confidence 445667777776654 3578999999999998654321 2222223444432 2 235899999999
Q ss_pred CCCCCCeEEEEecCCCc--eecccCCCCHHHHHHHHhcC
Q 021976 227 PKSKRPALIFLHLEAGK--ATPFRHQFTRLAIANFVTHT 263 (304)
Q Consensus 227 ~~~~~P~lv~~~~~~~~--~~~y~g~~~~~~i~~fi~~~ 263 (304)
+ .|++++|+++++. ..++.|..+.+++.+++++.
T Consensus 534 g---~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 534 G---LPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred C---CCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 6 9999999865544 46788999999999999864
No 265
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.11 E-value=0.0016 Score=45.73 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=44.1
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeC--cc------------------------------cHHHHHhCC
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA--YL------------------------------EKDLAKEYN 124 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~--~~------------------------------~~~~~~~~~ 124 (304)
++.|+.+.|++|..+.+.+.++.....+++.+..... .. +...++++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4679999999999999999999866665555554432 11 124567889
Q ss_pred CccccEEEEEe
Q 021976 125 ILAYPTLYLFV 135 (304)
Q Consensus 125 v~~~Pt~~~~~ 135 (304)
+.++|++++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999998854
No 266
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=97.08 E-value=0.0066 Score=44.84 Aligned_cols=87 Identities=10% Similarity=0.046 Sum_probs=58.0
Q ss_pred cCCHHHHHHhhcc--CCeEEEEEec-------CCCCccH---HHHHHHh-ccCCceeEEEec----------CHHHHhhc
Q 021976 167 ITTTDEAERILTV--ESKLVLGFLH-------DLEGMES---EELAAAS-KLHSDVNFYQTT----------SADVAEFF 223 (304)
Q Consensus 167 l~~~~~~~~~~~~--~~~~~v~f~~-------~~~~~~~---~~~~~~a-~~~~~~~f~~~~----------~~~l~~~~ 223 (304)
+.+.+++.+.+.+ +.+++|.|++ +||+++. ..+.+++ ...+++.|..+. +.++...+
T Consensus 6 ~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 6 VRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred ccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhcc
Confidence 4567777777765 5688999999 9998743 4455555 344456666432 35899999
Q ss_pred CCC-CCCCCCeEEEEecCCCceecccCC--CCHHHHHHHH
Q 021976 224 HIH-PKSKRPALIFLHLEAGKATPFRHQ--FTRLAIANFV 260 (304)
Q Consensus 224 ~i~-~~~~~P~lv~~~~~~~~~~~y~g~--~~~~~i~~fi 260 (304)
++. + .|++++|+.+. ...|+ .+.+.+..|.
T Consensus 86 ~I~~~---iPT~~~~~~~~----~l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 86 KLTTG---VPTLLRWKTPQ----RLVEDECLQADLVEMFF 118 (119)
T ss_pred CcccC---CCEEEEEcCCc----eecchhhcCHHHHHHhh
Confidence 997 6 99999996542 22222 3555555553
No 267
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0046 Score=50.74 Aligned_cols=94 Identities=13% Similarity=0.170 Sum_probs=65.8
Q ss_pred CceecCCHHHHHHhhccC--CeEEEEEecCCCCcc---HHHHHHHhccCCceeEEEe---cCHHHHhhcCCCCCCCCCeE
Q 021976 163 GTYSITTTDEAERILTVE--SKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPAL 234 (304)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~--~~~~v~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~P~l 234 (304)
++..+.+...++.-+... +.++|.|+..||+|+ ...|..++.......|..+ .-+..+..+|+.. .|++
T Consensus 2 ~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~a---mPTF 78 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNA---MPTF 78 (288)
T ss_pred CeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCccc---CceE
Confidence 456777777787766553 478888999999994 6668888855566666654 4456788899987 9999
Q ss_pred EEEecCCCceecccCCCCHHHHHHHHh
Q 021976 235 IFLHLEAGKATPFRHQFTRLAIANFVT 261 (304)
Q Consensus 235 v~~~~~~~~~~~y~g~~~~~~i~~fi~ 261 (304)
++|+++. +-..+.|. |...|+.-|.
T Consensus 79 iff~ng~-kid~~qGA-d~~gLe~kv~ 103 (288)
T KOG0908|consen 79 IFFRNGV-KIDQIQGA-DASGLEEKVA 103 (288)
T ss_pred EEEecCe-EeeeecCC-CHHHHHHHHH
Confidence 9999774 55566663 4443433333
No 268
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.021 Score=44.10 Aligned_cols=88 Identities=13% Similarity=0.221 Sum_probs=65.9
Q ss_pred CCCcEEEEEEc-CCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCc---------------------ccHHHHHhCCCcc-
Q 021976 72 KNRNVMVMFYA-NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY---------------------LEKDLAKEYNILA- 127 (304)
Q Consensus 72 ~~~~~lv~f~a-~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~---------------------~~~~~~~~~~v~~- 127 (304)
.++.++++||- .|++.|-.++-.|.+...++++ +..++.|..+ .+.++++.||+..
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~ 108 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGE 108 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccc
Confidence 67788888884 7899999999999999999987 7888888753 4567899999743
Q ss_pred -----------ccEEEEEe-CCeEEEEeeCC---CCHHHHHHHHHHH
Q 021976 128 -----------YPTLYLFV-AGVRQFQFFGE---RTRDVISAWVREK 159 (304)
Q Consensus 128 -----------~Pt~~~~~-~g~~~~~~~g~---~~~~~l~~~i~~~ 159 (304)
.++.++++ +|++...+... -..+++.+++++.
T Consensus 109 k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 109 KKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred cccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 35677776 78777777432 3456677766654
No 269
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.00 E-value=0.0091 Score=49.08 Aligned_cols=60 Identities=22% Similarity=0.252 Sum_probs=48.6
Q ss_pred ccCCCcEEcChhc---HHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEe
Q 021976 53 LYAKDVVSLNGKN---FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD 112 (304)
Q Consensus 53 ~~~~~v~~l~~~~---~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd 112 (304)
.++..|+.+++++ +-+..++++|.+++|-+-.||+=..-.+.++++++++.+.+.|..|-
T Consensus 79 APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VY 141 (237)
T PF00837_consen 79 APNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVY 141 (237)
T ss_pred CCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhh
Confidence 3456889998887 33555789999999999999999999999999999998744454443
No 270
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.98 E-value=0.0047 Score=43.95 Aligned_cols=65 Identities=18% Similarity=0.290 Sum_probs=42.9
Q ss_pred cHHHHhcCCCcEEEEEE----cCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHH----HhCCCccccEEEEEeC
Q 021976 65 NFSEFMGKNRNVMVMFY----ANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA----KEYNILAYPTLYLFVA 136 (304)
Q Consensus 65 ~~~~~~~~~~~~lv~f~----a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~ 136 (304)
..++.+++++ ++|+-. ++||++|++....+.+. ++.+..+|++++++.. +.-|...+|++++ +
T Consensus 4 ~v~~~i~~~~-Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~ 74 (97)
T TIGR00365 4 RIKEQIKENP-VVLYMKGTPQFPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--K 74 (97)
T ss_pred HHHHHhccCC-EEEEEccCCCCCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--C
Confidence 3455665554 444333 38999999988777663 4667788887766443 4456778898854 6
Q ss_pred Ce
Q 021976 137 GV 138 (304)
Q Consensus 137 g~ 138 (304)
|+
T Consensus 75 g~ 76 (97)
T TIGR00365 75 GE 76 (97)
T ss_pred CE
Confidence 73
No 271
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.89 E-value=0.0073 Score=47.79 Aligned_cols=107 Identities=16% Similarity=0.193 Sum_probs=76.4
Q ss_pred CCcEEcChhcHHHHh---cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEE
Q 021976 56 KDVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY 132 (304)
Q Consensus 56 ~~v~~l~~~~~~~~~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 132 (304)
..|..+++.+|.+.+ .++-.|+|..|...-+-|.-+...++.+|.+|+ .+.|+++-.+.. ...|-=...||++
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp-~iKFVki~at~c---IpNYPe~nlPTl~ 166 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP-QIKFVKIPATTC---IPNYPESNLPTLL 166 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC-cceEEecccccc---cCCCcccCCCeEE
Confidence 578999999998666 334557899999999999999999999999999 788888764432 1223445689999
Q ss_pred EEeCCeEEEEeeCC-------CCHHHHHHHHHHHhCCCceec
Q 021976 133 LFVAGVRQFQFFGE-------RTRDVISAWVREKMTLGTYSI 167 (304)
Q Consensus 133 ~~~~g~~~~~~~g~-------~~~~~l~~~i~~~~~~~~~~l 167 (304)
+|..|.....+.|. .+.+++..++. ..++.+...
T Consensus 167 VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~-qaga~l~d~ 207 (240)
T KOG3170|consen 167 VYHHGALKKQMIGLLELGGMNLTMEDVEDFLV-QAGAALTDG 207 (240)
T ss_pred EeecchHHhheehhhhhcCCcCCHHHHHHHHH-hcccccccc
Confidence 99999666555542 34556655554 333444443
No 272
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=96.86 E-value=0.0015 Score=55.28 Aligned_cols=92 Identities=21% Similarity=0.404 Sum_probs=73.1
Q ss_pred HHhcC--CCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEe-CcccHHHHHhCCCccccEEEEEeCCeEEEEee
Q 021976 68 EFMGK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD-AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFF 144 (304)
Q Consensus 68 ~~~~~--~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd-~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~ 144 (304)
.++.. ..++-+.||++||+..+..+|.+.-....+. .+....++ ....+....++|+.+.|++.+.... -..+|.
T Consensus 69 ~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~-~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t-~~~~~~ 146 (319)
T KOG2640|consen 69 DAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFS-SIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQT-CPASYR 146 (319)
T ss_pred HhhccccCCcccccchhcccCcccccCcccchhhhhcc-ccccccHHHHhhcccchhccccccCCcceeeccc-cchhhc
Confidence 44433 5779999999999999999999999888887 33333332 2234667889999999999887655 778999
Q ss_pred CCCCHHHHHHHHHHHhC
Q 021976 145 GERTRDVISAWVREKMT 161 (304)
Q Consensus 145 g~~~~~~l~~~i~~~~~ 161 (304)
|.++...|++|..+.++
T Consensus 147 ~~r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 147 GERDLASLVNFYTEITP 163 (319)
T ss_pred ccccHHHHHHHHHhhcc
Confidence 99999999999998885
No 273
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.83 E-value=0.014 Score=39.76 Aligned_cols=72 Identities=11% Similarity=0.079 Sum_probs=51.5
Q ss_pred EEEEEecCCCCccHHH---HHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecCCCceecccCCCCHHH
Q 021976 183 LVLGFLHDLEGMESEE---LAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLA 255 (304)
Q Consensus 183 ~~v~f~~~~~~~~~~~---~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~ 255 (304)
.+..|+.+||..+... +..++ ....++.+..+ .++++++++++.. .|++++ .+ . ..+.|..+.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~---vPt~~~--~g--~-~~~~G~~~~~~ 73 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMA---VPAIVI--NG--D-VEFIGAPTKEE 73 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCcc---CCEEEE--CC--E-EEEecCCCHHH
Confidence 3567899999875433 44444 34444555543 7889999999997 999885 22 2 47888889999
Q ss_pred HHHHHhc
Q 021976 256 IANFVTH 262 (304)
Q Consensus 256 i~~fi~~ 262 (304)
+.+++..
T Consensus 74 l~~~l~~ 80 (82)
T TIGR00411 74 LVEAIKK 80 (82)
T ss_pred HHHHHHh
Confidence 9999875
No 274
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0046 Score=42.29 Aligned_cols=53 Identities=13% Similarity=0.316 Sum_probs=38.8
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccH-----HHHHhC-CCccccEEEEEeCC
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----DLAKEY-NILAYPTLYLFVAG 137 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~-~v~~~Pt~~~~~~g 137 (304)
++.|..+|||+|++....+. ..++.+..+|.+.+. +..++- |.+.+|++++ +|
T Consensus 3 v~iyt~~~CPyC~~ak~~L~------~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~ 61 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD------RKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GG 61 (80)
T ss_pred EEEEECCCCchHHHHHHHHH------HcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CC
Confidence 56688899999999887766 226777777776554 344555 7899999876 55
No 275
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.75 E-value=0.011 Score=43.19 Aligned_cols=93 Identities=14% Similarity=0.148 Sum_probs=62.8
Q ss_pred HHHHHHhhccCCeEEEEEecCCCC-ccHHHHHHHh-c---cCCceeEEEecCH---HHHhhcCCCCCCCCCeEEEEecCC
Q 021976 170 TDEAERILTVESKLVLGFLHDLEG-MESEELAAAS-K---LHSDVNFYQTTSA---DVAEFFHIHPKSKRPALIFLHLEA 241 (304)
Q Consensus 170 ~~~~~~~~~~~~~~~v~f~~~~~~-~~~~~~~~~a-~---~~~~~~f~~~~~~---~l~~~~~i~~~~~~P~lv~~~~~~ 241 (304)
.+....+....-+..+.|+.+... .....+..+| . .++++.|..+... ...+.||++. ...|.+++....+
T Consensus 6 ~e~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~-~~~P~i~i~~~~~ 84 (111)
T cd03072 6 FENAEELTEEGLPFLILFHDKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTP-ADLPVIAIDSFRH 84 (111)
T ss_pred cccHHHHhcCCCCeEEEEecchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCH-hHCCEEEEEcchh
Confidence 344556666655555556633222 2455566666 6 8899998866333 3899999985 3589999888765
Q ss_pred Cceec-ccCCCCHHHHHHHHhcC
Q 021976 242 GKATP-FRHQFTRLAIANFVTHT 263 (304)
Q Consensus 242 ~~~~~-y~g~~~~~~i~~fi~~~ 263 (304)
...+. +.+.++.++|..|+.+.
T Consensus 85 ~~Ky~~~~~~~t~~~i~~Fv~~~ 107 (111)
T cd03072 85 MYLFPDFEDVYVPGKLKQFVLDL 107 (111)
T ss_pred cCcCCCCccccCHHHHHHHHHHH
Confidence 33444 77889999999999853
No 276
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.70 E-value=0.014 Score=39.40 Aligned_cols=68 Identities=10% Similarity=0.057 Sum_probs=49.3
Q ss_pred EEEecCCCCccHHH---HHHHh-ccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCCCceecccCCC-CHHHHHHH
Q 021976 185 LGFLHDLEGMESEE---LAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQF-TRLAIANF 259 (304)
Q Consensus 185 v~f~~~~~~~~~~~---~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~~-~~~~i~~f 259 (304)
|.||.+||+++... +.+++ ++..++.+..+.+.+.+.++++.+ .|++++ ++ +.. +.|.. +.+.|.++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~a~~~~v~~---vPti~i--~G--~~~-~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNEILEAGVTA---TPGVAV--DG--ELV-IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHcCCCc---CCEEEE--CC--EEE-EEeccCCHHHHHHH
Confidence 56788999985444 44444 466678888888788889999997 999998 22 333 77753 55788877
Q ss_pred H
Q 021976 260 V 260 (304)
Q Consensus 260 i 260 (304)
+
T Consensus 75 l 75 (76)
T TIGR00412 75 L 75 (76)
T ss_pred h
Confidence 6
No 277
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.54 E-value=0.021 Score=40.07 Aligned_cols=98 Identities=12% Similarity=0.194 Sum_probs=66.8
Q ss_pred ceecCCHHHHHHhhccCCeEEEEEecCCCC--ccHHHHHHHh-ccCCceeEE---Ee--cCHHHHhhcCCCCCCC-CCeE
Q 021976 164 TYSITTTDEAERILTVESKLVLGFLHDLEG--MESEELAAAS-KLHSDVNFY---QT--TSADVAEFFHIHPKSK-RPAL 234 (304)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~v~f~~~~~~--~~~~~~~~~a-~~~~~~~f~---~~--~~~~l~~~~~i~~~~~-~P~l 234 (304)
+..+.+..++..+++..+.+++.|..+..+ .....+..+| ..++..... +. +...||+++++..... -|..
T Consensus 3 ie~i~d~KdfKKLLRTr~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~ 82 (112)
T cd03067 3 IEDISDHKDFKKLLRTRNNVLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVE 82 (112)
T ss_pred cccccchHHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcch
Confidence 446778889999999988889888766443 3566777777 566665544 33 4678999999982111 2322
Q ss_pred -EEEecCCCceecccCCCCHHHHHHHHhc
Q 021976 235 -IFLHLEAGKATPFRHQFTRLAIANFVTH 262 (304)
Q Consensus 235 -v~~~~~~~~~~~y~g~~~~~~i~~fi~~ 262 (304)
-=|++++ -...|+-..+..+|..|++.
T Consensus 83 LkHYKdG~-fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 83 LKHYKDGD-FHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred hhcccCCC-ccccccchhhHHHHHHHhhC
Confidence 2233333 55677777889999999874
No 278
>PRK10638 glutaredoxin 3; Provisional
Probab=96.51 E-value=0.012 Score=40.52 Aligned_cols=54 Identities=6% Similarity=0.166 Sum_probs=39.3
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHH----HHHhCCCccccEEEEEeCCe
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNILAYPTLYLFVAGV 138 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~ 138 (304)
++.|..+||++|++....+++. ++.+..+|++++++ +.+..|...+|++++ +|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~ 61 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQ 61 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence 5567889999999998877752 56677788877653 344557788998844 674
No 279
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.46 E-value=0.0096 Score=41.71 Aligned_cols=48 Identities=23% Similarity=0.394 Sum_probs=34.8
Q ss_pred CCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHH----HHhCCCccccEEEEEeCCe
Q 021976 83 NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL----AKEYNILAYPTLYLFVAGV 138 (304)
Q Consensus 83 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~ 138 (304)
+||++|++....+.+. ++.+..+|+++++++ .+..|-..+|+++ .+|+
T Consensus 21 ~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vf--i~g~ 72 (90)
T cd03028 21 PRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLY--VNGE 72 (90)
T ss_pred CCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEE--ECCE
Confidence 7999999988777664 466778888776544 3445778899984 3774
No 280
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=96.41 E-value=0.015 Score=43.07 Aligned_cols=75 Identities=5% Similarity=0.029 Sum_probs=51.2
Q ss_pred CCeEEEEEecCCCCccHHHHHHHhccCC--------------------------ceeEEEecCHHHHhhcCCCCCCCCCe
Q 021976 180 ESKLVLGFLHDLEGMESEELAAASKLHS--------------------------DVNFYQTTSADVAEFFHIHPKSKRPA 233 (304)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~~~~~a~~~~--------------------------~~~f~~~~~~~l~~~~~i~~~~~~P~ 233 (304)
++++++.|+.+||..+......+..+.. .+.+....+.++++.|++.+ .|+
T Consensus 20 ~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~---~P~ 96 (123)
T cd03011 20 GKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSV---TPA 96 (123)
T ss_pred CCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCc---ccE
Confidence 4678888999999865444322221111 12222334567999999986 999
Q ss_pred EEEEecCCCceecccCCCCHHHHHH
Q 021976 234 LIFLHLEAGKATPFRHQFTRLAIAN 258 (304)
Q Consensus 234 lv~~~~~~~~~~~y~g~~~~~~i~~ 258 (304)
++++.+++ ....+.|..+.+.|.+
T Consensus 97 ~~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 97 IVIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred EEEEcCCC-eEEEEeccCCHHHHHh
Confidence 99999876 7777888888888754
No 281
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=96.36 E-value=0.0014 Score=52.16 Aligned_cols=156 Identities=15% Similarity=0.195 Sum_probs=65.6
Q ss_pred EEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCc---ccHHHHHhCCCc-----------cccEEEEEeCCeEEEEee
Q 021976 79 MFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY---LEKDLAKEYNIL-----------AYPTLYLFVAGVRQFQFF 144 (304)
Q Consensus 79 ~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~---~~~~~~~~~~v~-----------~~Pt~~~~~~g~~~~~~~ 144 (304)
.|..|.|++|-...|.|.++..++++.+.+--|=.. .-.+...+.++. .+|....|+ .....
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~la~k----AA~~q 77 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIPGGLMPDINDFMPRMPINGDFWRNEPRSSSYPACLAYK----AAQLQ 77 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE--SS-S--SB--H----TTHHHS--BS--HHHHHHHH----HHHTT
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEEccchHHHHHHHHhcCCCHHHhcCCCCCCchHHHHHHH----HHHHh
Confidence 589999999999999999999999985544433321 111111111110 111111111 11234
Q ss_pred CCCCHHHHHHHHHHHhCCCceecCCHHHHHHhhccCCeEEEEEecCCCCccHHHHHHHhccCCc-eeEEEecCHHHHhhc
Q 021976 145 GERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSD-VNFYQTTSADVAEFF 223 (304)
Q Consensus 145 g~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~a~~~~~-~~f~~~~~~~l~~~~ 223 (304)
|......+..-|++.+-..-..+++.+.+.++.++-.. ..+.|.+. ++.+ +.=....+..+++.+
T Consensus 78 g~k~~~~fL~~lQ~a~~~~~~~~s~~~~l~~iA~~~gL------------D~~~F~~d--~~S~~~~~~~~~D~~la~~m 143 (176)
T PF13743_consen 78 GKKKARRFLRALQEALFLEGKNYSDEELLLEIAEELGL------------DVEMFKED--LHSDEAKQAFQEDQQLAREM 143 (176)
T ss_dssp T-H--HHHHHHHHHHHHTS---TTSHHHHHHHHHHTT--------------HHHHHHH--HTSHHHHHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCC------------CHHHHHHH--HhChHHHHHHHHHHHHHHHc
Confidence 55555666666766665555556555555555543321 11111111 0000 000112355799999
Q ss_pred CCCCCCCCCeEEEEecC-CCceecccCCCCHHH
Q 021976 224 HIHPKSKRPALIFLHLE-AGKATPFRHQFTRLA 255 (304)
Q Consensus 224 ~i~~~~~~P~lv~~~~~-~~~~~~y~g~~~~~~ 255 (304)
+|++ .|++|++... ++.-+..+|..+.+.
T Consensus 144 ~I~~---~Ptlvi~~~~~~~~g~~i~g~~~~~~ 173 (176)
T PF13743_consen 144 GITG---FPTLVIFNENNEEYGILIEGYYSYEV 173 (176)
T ss_dssp T-SS---SSEEEEE-------------------
T ss_pred CCCC---CCEEEEEecccccccccccccccccc
Confidence 9997 9999999833 235566666655443
No 282
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=96.34 E-value=0.017 Score=42.01 Aligned_cols=79 Identities=10% Similarity=0.145 Sum_probs=49.3
Q ss_pred cCCeEEEEEecCCCCccHHHHHHH------h-ccCCceeEEEe--c---------------------CHHHHhhcCCCCC
Q 021976 179 VESKLVLGFLHDLEGMESEELAAA------S-KLHSDVNFYQT--T---------------------SADVAEFFHIHPK 228 (304)
Q Consensus 179 ~~~~~~v~f~~~~~~~~~~~~~~~------a-~~~~~~~f~~~--~---------------------~~~l~~~~~i~~~ 228 (304)
+.++.++.|+++||..+.+....+ . .++.++.+... . +.++.+.+++.+
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g- 82 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG- 82 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S-
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc-
Confidence 466788889999998765333322 2 23334444321 1 245899999997
Q ss_pred CCCCeEEEEecCCCceecccCCCCHHHHHHHH
Q 021976 229 SKRPALIFLHLEAGKATPFRHQFTRLAIANFV 260 (304)
Q Consensus 229 ~~~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi 260 (304)
.|+++++..+++....+.|..+.++|.+++
T Consensus 83 --tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 --TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp --SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred --cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 999999986655566789999999998875
No 283
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=96.23 E-value=0.014 Score=54.21 Aligned_cols=47 Identities=6% Similarity=0.157 Sum_probs=39.5
Q ss_pred cCHHHHhhcCCCCCCCCCeEEEEecCCCceecccCCCCHHHHHHHHhcCC
Q 021976 215 TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTK 264 (304)
Q Consensus 215 ~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi~~~~ 264 (304)
.+.++.+.|++.. +|+.+++.+++.....+.|..+.+.|..+|+..+
T Consensus 127 ~~~~lak~fgV~g---iPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~~ 173 (521)
T PRK14018 127 NGGTLAQSLNISV---YPSWAIIGKDGDVQRIVKGSISEAQALALIRNPN 173 (521)
T ss_pred ccHHHHHHcCCCC---cCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHhh
Confidence 4567889999996 9999888877767788899999999999999544
No 284
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.22 E-value=0.013 Score=46.86 Aligned_cols=103 Identities=16% Similarity=0.221 Sum_probs=79.0
Q ss_pred CCcEEcC-hhcHHHHhcCC---CcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEE
Q 021976 56 KDVVSLN-GKNFSEFMGKN---RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL 131 (304)
Q Consensus 56 ~~v~~l~-~~~~~~~~~~~---~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 131 (304)
..|.+++ .+.|-..+.+. -.++|..|-+.-+-|..+...+.=+|.+|+ .+.|.++-.+. -...++|...+.|++
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP-~vKFckikss~-~gas~~F~~n~lP~L 215 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP-IVKFCKIKSSN-TGASDRFSLNVLPTL 215 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC-ceeEEEeeecc-ccchhhhcccCCceE
Confidence 3567765 46788888443 357899999999999999999999999999 78888887543 355788999999999
Q ss_pred EEEeCCeEEEEee-------CCCCHHHHHHHHHHHh
Q 021976 132 YLFVAGVRQFQFF-------GERTRDVISAWVREKM 160 (304)
Q Consensus 132 ~~~~~g~~~~~~~-------g~~~~~~l~~~i~~~~ 160 (304)
.+|++|+.+..|. ....+.++.+|++.+-
T Consensus 216 liYkgGeLIgNFv~va~qlgedffa~dle~FL~e~g 251 (273)
T KOG3171|consen 216 LIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYG 251 (273)
T ss_pred EEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcC
Confidence 9999997665442 2355666777776653
No 285
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=96.09 E-value=0.055 Score=46.26 Aligned_cols=80 Identities=11% Similarity=0.024 Sum_probs=54.5
Q ss_pred CCeEEEEEecCCCCccHHH---HHHHhccCC-ceeEEEec------------CHHHHhhcCCCCCCCCCeEEEEecCCCc
Q 021976 180 ESKLVLGFLHDLEGMESEE---LAAASKLHS-DVNFYQTT------------SADVAEFFHIHPKSKRPALIFLHLEAGK 243 (304)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~---~~~~a~~~~-~~~f~~~~------------~~~l~~~~~i~~~~~~P~lv~~~~~~~~ 243 (304)
++..+|.|+.+||.++... +..++...+ .+....+. +..++++||+.. .|++++++++++.
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~---vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRT---VPAVFLADPDPNQ 242 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCc---CCeEEEEECCCCE
Confidence 5678889999999886544 444442222 22222221 357899999986 9999999984434
Q ss_pred e-ecccCCCCHHHHHHHHhc
Q 021976 244 A-TPFRHQFTRLAIANFVTH 262 (304)
Q Consensus 244 ~-~~y~g~~~~~~i~~fi~~ 262 (304)
. ....|..+.++|.+.|..
T Consensus 243 v~~v~~G~~s~~eL~~~i~~ 262 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILL 262 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHH
Confidence 3 445588899999888874
No 286
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.05 E-value=0.026 Score=40.45 Aligned_cols=90 Identities=18% Similarity=0.167 Sum_probs=48.5
Q ss_pred eecCCHHHHHHhhcc--CCeEEEEEecCCCCcc---HHHHHHHhc-cCCceeEEEe-------cCHHHHhhcCCCCCCCC
Q 021976 165 YSITTTDEAERILTV--ESKLVLGFLHDLEGME---SEELAAASK-LHSDVNFYQT-------TSADVAEFFHIHPKSKR 231 (304)
Q Consensus 165 ~~l~~~~~~~~~~~~--~~~~~v~f~~~~~~~~---~~~~~~~a~-~~~~~~f~~~-------~~~~l~~~~~i~~~~~~ 231 (304)
..|++.++++++++. ..++++.=.++.|+-. ++.|..... ..+++.++.. -+..+++.|||.. ..
T Consensus 2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~H--eS 79 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKH--ES 79 (105)
T ss_dssp -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT------S
T ss_pred CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCc--CC
Confidence 357889999999987 4555543345667653 344444432 2222555542 3557999999996 68
Q ss_pred CeEEEEecCCCceecccCCCCHHHH
Q 021976 232 PALIFLHLEAGKATPFRHQFTRLAI 256 (304)
Q Consensus 232 P~lv~~~~~~~~~~~y~g~~~~~~i 256 (304)
|.+++++++......=.+.++.+.|
T Consensus 80 PQ~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 80 PQVILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp SEEEEEETTEEEEEEEGGG-SHHHH
T ss_pred CcEEEEECCEEEEECccccCCHHhc
Confidence 9999999885444433455676665
No 287
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=95.96 E-value=0.025 Score=42.25 Aligned_cols=74 Identities=11% Similarity=-0.043 Sum_probs=48.8
Q ss_pred CCeEEEEEecCCCCccHHHHHHHhccCC--ceeE--------------------------EEecCHHHHhhcCCCCCCCC
Q 021976 180 ESKLVLGFLHDLEGMESEELAAASKLHS--DVNF--------------------------YQTTSADVAEFFHIHPKSKR 231 (304)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~~~~~a~~~~--~~~f--------------------------~~~~~~~l~~~~~i~~~~~~ 231 (304)
+++++|.|+.+||.++.+....+.++.. .+.+ ....+..+++.|++.. .
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~---~ 101 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYG---V 101 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCC---C
Confidence 5678889999999876554444332111 1211 1224556888899986 9
Q ss_pred CeEEEEecCCCceecccCCCCHHHH
Q 021976 232 PALIFLHLEAGKATPFRHQFTRLAI 256 (304)
Q Consensus 232 P~lv~~~~~~~~~~~y~g~~~~~~i 256 (304)
|+.+++.+++.....+.|..+.+.|
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHhc
Confidence 9888887776667778888777654
No 288
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.94 E-value=0.04 Score=51.13 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=68.5
Q ss_pred eecCCHHHHHHhhccCC--eEEEEEecCCCCccHHH----HH---HHhccCCce--eEEEe----cCHHHHhhcCCCCCC
Q 021976 165 YSITTTDEAERILTVES--KLVLGFLHDLEGMESEE----LA---AASKLHSDV--NFYQT----TSADVAEFFHIHPKS 229 (304)
Q Consensus 165 ~~l~~~~~~~~~~~~~~--~~~v~f~~~~~~~~~~~----~~---~~a~~~~~~--~f~~~----~~~~l~~~~~i~~~~ 229 (304)
..+++..++++.+.+++ ++++.||.+||..+.+. +. ......+-+ +...+ .+.++.++|++-+
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G-- 534 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFG-- 534 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCC--
Confidence 34556668898888776 99999999999764222 21 111222222 22233 3446888999886
Q ss_pred CCCeEEEEecCCCceecccCCCCHHHHHHHHhcC
Q 021976 230 KRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (304)
Q Consensus 230 ~~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 263 (304)
.|++++|..+++.+....|..|.+.+.+++++.
T Consensus 535 -~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 535 -VPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred -CCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 999999998887888899999999999999864
No 289
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=95.92 E-value=0.065 Score=42.27 Aligned_cols=46 Identities=9% Similarity=0.278 Sum_probs=38.4
Q ss_pred ecCHHHHhhcCCCCCCCCCeEEEEecCCCceecccCCCCHHHHHHHHhc
Q 021976 214 TTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTH 262 (304)
Q Consensus 214 ~~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi~~ 262 (304)
..+.++.+.|++.. .|+++++.+++.....+.|..+.+++.+++.+
T Consensus 125 d~~~~~~~~~~v~~---~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 125 DKGRQVIDAYGVGP---LPTTFLIDKDGKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred CCcchHHHHcCCCC---cCeEEEECCCCcEEEEEeCCCCHHHHHHHHHH
Confidence 34568899999986 99999998887666688899999999999874
No 290
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=95.89 E-value=0.066 Score=39.92 Aligned_cols=70 Identities=11% Similarity=0.027 Sum_probs=46.4
Q ss_pred HHHHHHhhccCCeEEEEEecCCCCccHHHHH------HHh-ccCCceeEEE---ecCHHHHhh--------cCCCCCCCC
Q 021976 170 TDEAERILTVESKLVLGFLHDLEGMESEELA------AAS-KLHSDVNFYQ---TTSADVAEF--------FHIHPKSKR 231 (304)
Q Consensus 170 ~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~------~~a-~~~~~~~f~~---~~~~~l~~~--------~~i~~~~~~ 231 (304)
.+.++...+++++++|.|+.+||..+...-. .++ .+..++.+.. ...+++.+. |++.+ +
T Consensus 5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G---~ 81 (124)
T cd02955 5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGG---W 81 (124)
T ss_pred HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCC---C
Confidence 4567778888999999999999988544332 122 2334444443 345556543 46665 9
Q ss_pred CeEEEEecCCC
Q 021976 232 PALIFLHLEAG 242 (304)
Q Consensus 232 P~lv~~~~~~~ 242 (304)
|+++++.+++.
T Consensus 82 Pt~vfl~~~G~ 92 (124)
T cd02955 82 PLNVFLTPDLK 92 (124)
T ss_pred CEEEEECCCCC
Confidence 99999988764
No 291
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=95.87 E-value=0.14 Score=37.36 Aligned_cols=87 Identities=7% Similarity=0.052 Sum_probs=59.1
Q ss_pred HHHhhccCCeEEEEEecCCCCccHHHHHH------Hh-ccCCceeEEEe-----cCHHHHhhcCCCCCCCCCeEEEEec-
Q 021976 173 AERILTVESKLVLGFLHDLEGMESEELAA------AS-KLHSDVNFYQT-----TSADVAEFFHIHPKSKRPALIFLHL- 239 (304)
Q Consensus 173 ~~~~~~~~~~~~v~f~~~~~~~~~~~~~~------~a-~~~~~~~f~~~-----~~~~l~~~~~i~~~~~~P~lv~~~~- 239 (304)
++...+.++.++|.+..+||..+...-.. +. .+..++.+... ...++++.|++.. +|+++++.+
T Consensus 10 ~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~---~P~~~~i~~~ 86 (114)
T cd02958 10 KQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDK---YPHIAIIDPR 86 (114)
T ss_pred HHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccC---CCeEEEEeCc
Confidence 44555567788888899999654332221 11 23334433322 3457999999986 999999998
Q ss_pred CCCceecccCCCCHHHHHHHHhc
Q 021976 240 EAGKATPFRHQFTRLAIANFVTH 262 (304)
Q Consensus 240 ~~~~~~~y~g~~~~~~i~~fi~~ 262 (304)
.+..-.++.|..+.+++..-+++
T Consensus 87 ~g~~l~~~~G~~~~~~f~~~L~~ 109 (114)
T cd02958 87 TGEVLKVWSGNITPEDLLSQLIE 109 (114)
T ss_pred cCcEeEEEcCCCCHHHHHHHHHH
Confidence 56567788899999988877765
No 292
>PRK10824 glutaredoxin-4; Provisional
Probab=95.72 E-value=0.033 Score=40.84 Aligned_cols=66 Identities=17% Similarity=0.342 Sum_probs=40.6
Q ss_pred hcHHHHhcCCCcEEEEEEc----CCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHH----hCCCccccEEEEEe
Q 021976 64 KNFSEFMGKNRNVMVMFYA----NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAK----EYNILAYPTLYLFV 135 (304)
Q Consensus 64 ~~~~~~~~~~~~~lv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~----~~~v~~~Pt~~~~~ 135 (304)
+..++.+++++ ++|.--. |||++|++....+.+.. +.+..+|.++++++.. .-|...+|.+++
T Consensus 6 ~~v~~~I~~~~-Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI-- 76 (115)
T PRK10824 6 EKIQRQIAENP-ILLYMKGSPKLPSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV-- 76 (115)
T ss_pred HHHHHHHhcCC-EEEEECCCCCCCCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--
Confidence 33456665554 4443332 59999999888776652 4455566666654433 336677888765
Q ss_pred CCe
Q 021976 136 AGV 138 (304)
Q Consensus 136 ~g~ 138 (304)
+|+
T Consensus 77 ~G~ 79 (115)
T PRK10824 77 DGE 79 (115)
T ss_pred CCE
Confidence 773
No 293
>smart00594 UAS UAS domain.
Probab=95.71 E-value=0.15 Score=37.87 Aligned_cols=85 Identities=11% Similarity=0.158 Sum_probs=56.8
Q ss_pred HHHhhccCCeEEEEEecCCCCccHHHHHHH------h-ccCCceeEEE-----ecCHHHHhhcCCCCCCCCCeEEEEecC
Q 021976 173 AERILTVESKLVLGFLHDLEGMESEELAAA------S-KLHSDVNFYQ-----TTSADVAEFFHIHPKSKRPALIFLHLE 240 (304)
Q Consensus 173 ~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~------a-~~~~~~~f~~-----~~~~~l~~~~~i~~~~~~P~lv~~~~~ 240 (304)
++...++.+..+|.+..+||..+...-... . .+..++.+.. ....++++.|++++ +|+++++.+.
T Consensus 20 ~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~---~P~~~~l~~~ 96 (122)
T smart00594 20 KQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDS---FPYVAIVDPR 96 (122)
T ss_pred HHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCC---CCEEEEEecC
Confidence 345555677888889999998643332221 1 2333444332 24557999999986 9999999877
Q ss_pred CCc-----eecccCCCCHHHHHHHH
Q 021976 241 AGK-----ATPFRHQFTRLAIANFV 260 (304)
Q Consensus 241 ~~~-----~~~y~g~~~~~~i~~fi 260 (304)
++. -....|..+.+++..++
T Consensus 97 ~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 97 TGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CCceeEEEeccccCCCCHHHHHHhh
Confidence 522 34678999999988876
No 294
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=95.68 E-value=0.042 Score=43.58 Aligned_cols=82 Identities=5% Similarity=-0.064 Sum_probs=54.2
Q ss_pred cCCeEEEEEecCCCCccHHHHHHHhccCC-cee--------------------------EEEecCHHHHhhcCCCCCCCC
Q 021976 179 VESKLVLGFLHDLEGMESEELAAASKLHS-DVN--------------------------FYQTTSADVAEFFHIHPKSKR 231 (304)
Q Consensus 179 ~~~~~~v~f~~~~~~~~~~~~~~~a~~~~-~~~--------------------------f~~~~~~~l~~~~~i~~~~~~ 231 (304)
.++++++.|+.+||.++.+....+.++.. ++. +....+..+.+.|++.+ .
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~---~ 138 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG---A 138 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee---C
Confidence 45678888899999875544333221111 111 11223446777888875 8
Q ss_pred CeEEEEecCCCceecccCCCCHHHHHHHHhcC
Q 021976 232 PALIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (304)
Q Consensus 232 P~lv~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 263 (304)
|+.+++.+++.....+.|..+.+++.+++.+.
T Consensus 139 P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 139 PETFLVDGNGVILYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred CeEEEEcCCceEEEEEeccCCHHHHHHHHHHH
Confidence 98888877766677788989999999998764
No 295
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=95.64 E-value=0.12 Score=37.77 Aligned_cols=67 Identities=13% Similarity=0.216 Sum_probs=49.6
Q ss_pred cHHHHHHHh-ccC-CceeEEEecCH---HHHhhcCCCCC-CCCCeEEEEecCCCceecccCCC-CHHHHHHHHhc
Q 021976 195 ESEELAAAS-KLH-SDVNFYQTTSA---DVAEFFHIHPK-SKRPALIFLHLEAGKATPFRHQF-TRLAIANFVTH 262 (304)
Q Consensus 195 ~~~~~~~~a-~~~-~~~~f~~~~~~---~l~~~~~i~~~-~~~P~lv~~~~~~~~~~~y~g~~-~~~~i~~fi~~ 262 (304)
....+..+| .++ +++.|..+... ...+.||++.. ...|+++++..++ +.+.++++. +.++|.+|+.+
T Consensus 36 ~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~ 109 (111)
T cd03073 36 WRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKG-KKYVMEEEFSDVDALEEFLED 109 (111)
T ss_pred HHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCC-CccCCCcccCCHHHHHHHHHH
Confidence 455677777 688 69998876433 48899999852 1389999987654 444467888 99999999975
No 296
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=95.56 E-value=0.27 Score=35.60 Aligned_cols=90 Identities=12% Similarity=0.169 Sum_probs=63.8
Q ss_pred ChhcHHHHhcCC-CcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCC---
Q 021976 62 NGKNFSEFMGKN-RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG--- 137 (304)
Q Consensus 62 ~~~~~~~~~~~~-~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g--- 137 (304)
+.++++..+... +.++|-|+..--+ .....+.++|+.+.+...|+... +..+.+++++. .|.+++|+.-
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~-~~~vvl~rp~~~~ 79 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVS-PGQLVVFQPEKFQ 79 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCC-CCceEEECcHHHh
Confidence 446677777666 7888888876433 46678999999997788887655 45777888876 5677777321
Q ss_pred ----eEEEEeeCC-CCHHH-HHHHHHH
Q 021976 138 ----VRQFQFFGE-RTRDV-ISAWVRE 158 (304)
Q Consensus 138 ----~~~~~~~g~-~~~~~-l~~~i~~ 158 (304)
.....|.|. .+.+. |.+|++.
T Consensus 80 ~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 80 SKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred hhcCcceeeeeccccchHHHHHHHHhc
Confidence 234677877 56656 9999975
No 297
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.035 Score=52.36 Aligned_cols=83 Identities=18% Similarity=0.258 Sum_probs=65.0
Q ss_pred CcEEcChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHH---HHHHHHhhCCcEEEEEeCcccHHHHHhC--------CC
Q 021976 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLEKDLAKEY--------NI 125 (304)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v 125 (304)
+-..-.++-|.++-.+++|+++..-.+||..|+.++.+= .++|+.++..++-++||-++-+++-+.| |-
T Consensus 27 ~W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~ 106 (667)
T COG1331 27 DWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQ 106 (667)
T ss_pred cccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccC
Confidence 334467788999999999999999999999999987644 6778888878899999998877665544 24
Q ss_pred ccccEEEEEe-CCeE
Q 021976 126 LAYPTLYLFV-AGVR 139 (304)
Q Consensus 126 ~~~Pt~~~~~-~g~~ 139 (304)
-|.|-.++.. +|+.
T Consensus 107 GGWPLtVfLTPd~kP 121 (667)
T COG1331 107 GGWPLTVFLTPDGKP 121 (667)
T ss_pred CCCceeEEECCCCce
Confidence 5799655554 7764
No 298
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=95.51 E-value=0.053 Score=42.19 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=40.4
Q ss_pred cCCCcEEEEEEcCCChhhhhh-HHHHHHHHHHhhC-Cc-EEEEEeCccc---HHHHHhCCC
Q 021976 71 GKNRNVMVMFYANWCYWSKKL-APEFAAAAKMLKG-EA-DLVMVDAYLE---KDLAKEYNI 125 (304)
Q Consensus 71 ~~~~~~lv~f~a~wC~~C~~~-~~~~~~~~~~~~~-~~-~~~~vd~~~~---~~~~~~~~v 125 (304)
.++..+|+.|.+.||+.|..+ .+.+.+..+++.+ ++ .++.|.++.. .+.++++++
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 344556666668999999999 9999999999875 66 4888877643 345556665
No 299
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=95.33 E-value=0.71 Score=37.78 Aligned_cols=105 Identities=20% Similarity=0.254 Sum_probs=68.4
Q ss_pred CcEEcChhcHHHHhcCCCcEEEEEEcCCCh-hhhhhHHHHHHHHHHhh-C---CcEEEEEeCcc----------------
Q 021976 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCY-WSKKLAPEFAAAAKMLK-G---EADLVMVDAYL---------------- 115 (304)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~-~C~~~~~~~~~~~~~~~-~---~~~~~~vd~~~---------------- 115 (304)
.+.+-+++.+...--++++++|.|.=+.|+ -|-.....+.++.++.. + ++.++-|-+|.
T Consensus 51 ~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~ 130 (207)
T COG1999 51 ELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNF 130 (207)
T ss_pred eeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccC
Confidence 344444555554444789999999988884 68888888888877776 3 44444443332
Q ss_pred -------------cHHHHHhCCCcc--c-------------cEEEEEe-CCeEEEEeeCCCCHHHHHHHHHHHhC
Q 021976 116 -------------EKDLAKEYNILA--Y-------------PTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (304)
Q Consensus 116 -------------~~~~~~~~~v~~--~-------------Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (304)
..+++++|+|.. + ..+++++ +|+....|.+....+.+.+.+++.+.
T Consensus 131 ~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 131 DPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred CCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 134667777653 1 2244455 88888888877778888888877653
No 300
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=95.23 E-value=0.13 Score=43.63 Aligned_cols=99 Identities=13% Similarity=0.127 Sum_probs=59.5
Q ss_pred CceecCCHHHHHHhhcc---CCeEEEEEecCCCCc---cHHHHHHHhccCCceeEEEecCH--HHHhhcCCCCCCCCCeE
Q 021976 163 GTYSITTTDEAERILTV---ESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQTTSA--DVAEFFHIHPKSKRPAL 234 (304)
Q Consensus 163 ~~~~l~~~~~~~~~~~~---~~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~~~~--~l~~~~~i~~~~~~P~l 234 (304)
.+.++.+.+.+-+.++. ...++|.+|.+.... .-..+..+|..+..++|..+... .+...|.... +|+|
T Consensus 126 ~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~~~~~f~~~~---LPtl 202 (265)
T PF02114_consen 126 EVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCPASENFPDKN---LPTL 202 (265)
T ss_dssp SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCCTTTTS-TTC----SEE
T ss_pred eEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccCcccCCcccC---CCEE
Confidence 45667666665555543 234556677765443 55667778878888999865432 3778899886 9999
Q ss_pred EEEecCCC--ceecc----cCCCCHHHHHHHHhcCC
Q 021976 235 IFLHLEAG--KATPF----RHQFTRLAIANFVTHTK 264 (304)
Q Consensus 235 v~~~~~~~--~~~~y----~g~~~~~~i~~fi~~~~ 264 (304)
++|+.++- ..+.+ ..+++.++|..|+.++.
T Consensus 203 lvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 203 LVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp EEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred EEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence 99997752 11222 12577899999999875
No 301
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=95.16 E-value=0.063 Score=48.81 Aligned_cols=54 Identities=15% Similarity=0.250 Sum_probs=39.8
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHH---Hh---------CCCccccEEEEEeCCe
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA---KE---------YNILAYPTLYLFVAGV 138 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~---~~---------~~v~~~Pt~~~~~~g~ 138 (304)
++.|..+|||+|++....+.+. ++.+-.+|+++++... ++ .|...+|++++ +|+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~ 69 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDV 69 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCE
Confidence 6779999999999987766652 5788889988776322 22 36788999966 553
No 302
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=95.13 E-value=0.11 Score=38.40 Aligned_cols=72 Identities=15% Similarity=0.129 Sum_probs=43.1
Q ss_pred HHHHHhhccCCeEEEEEecCCCCccHHH---HHHHh---ccCCceeEE-EecCH-HHHhhcCCCCCCCCCeEEEEecCCC
Q 021976 171 DEAERILTVESKLVLGFLHDLEGMESEE---LAAAS---KLHSDVNFY-QTTSA-DVAEFFHIHPKSKRPALIFLHLEAG 242 (304)
Q Consensus 171 ~~~~~~~~~~~~~~v~f~~~~~~~~~~~---~~~~a---~~~~~~~f~-~~~~~-~l~~~~~i~~~~~~P~lv~~~~~~~ 242 (304)
+.++....++++++|.|+.+||+++... +...+ ....++... ...++ ...+.|++.+ ...|+++++.++++
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g-~~vPt~~f~~~~Gk 88 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDG-GYIPRILFLDPSGD 88 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCC-CccceEEEECCCCC
Confidence 4455566678889999999999975433 33322 122222222 22332 4557788763 23899999985553
Q ss_pred c
Q 021976 243 K 243 (304)
Q Consensus 243 ~ 243 (304)
.
T Consensus 89 ~ 89 (117)
T cd02959 89 V 89 (117)
T ss_pred C
Confidence 3
No 303
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.99 E-value=0.3 Score=34.00 Aligned_cols=70 Identities=13% Similarity=-0.063 Sum_probs=46.6
Q ss_pred CCeEEEEEecCCCCcc---HHHHHHHhccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecCCCceecccCCCCH
Q 021976 180 ESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTR 253 (304)
Q Consensus 180 ~~~~~v~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~~~~ 253 (304)
++.-+..|.+++|..+ .+.+..++....++.+... ..++++++|++.+ .|++++ ++ ...+.|..+.
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~---vPt~vi--dG---~~~~~G~~~~ 83 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMS---VPAIFL--NG---ELFGFGRMTL 83 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCcc---CCEEEE--CC---EEEEeCCCCH
Confidence 5556777888888764 4445556555556666643 5678999999997 999974 22 2344676665
Q ss_pred HHHH
Q 021976 254 LAIA 257 (304)
Q Consensus 254 ~~i~ 257 (304)
+++.
T Consensus 84 ~e~~ 87 (89)
T cd03026 84 EEIL 87 (89)
T ss_pred HHHh
Confidence 5543
No 304
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.14 Score=36.79 Aligned_cols=65 Identities=15% Similarity=0.325 Sum_probs=41.9
Q ss_pred HHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccH-HHH----HhCCCccccEEEEEeCCe
Q 021976 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-DLA----KEYNILAYPTLYLFVAGV 138 (304)
Q Consensus 66 ~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~----~~~~v~~~Pt~~~~~~g~ 138 (304)
.++++.+++ +|.|..+||+.|+.+...|.+ +.....++.+|-..+. ++. +--|.+.+|.+++ +|+
T Consensus 7 v~~~i~~~~--VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk 76 (104)
T KOG1752|consen 7 VRKMISENP--VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGK 76 (104)
T ss_pred HHHHhhcCC--EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCE
Confidence 445554443 455889999999997777766 4335667777766543 332 2234667888766 774
No 305
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=94.75 E-value=0.17 Score=40.60 Aligned_cols=42 Identities=2% Similarity=-0.105 Sum_probs=33.0
Q ss_pred HHHhhcCCCCCCCCCeEEEEecCCCceecccCCCCHHHHHHHHhc
Q 021976 218 DVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTH 262 (304)
Q Consensus 218 ~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi~~ 262 (304)
.+.+.|++.+ .|+.+++.+++.....+.|..+.+.+.++|..
T Consensus 133 ~~~~~~gv~~---~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~ 174 (185)
T PRK15412 133 MLGLDLGVYG---APETFLIDGNGIIRYRHAGDLNPRVWESEIKP 174 (185)
T ss_pred cHHHhcCCCc---CCeEEEECCCceEEEEEecCCCHHHHHHHHHH
Confidence 3555778775 99888888777677888899999888888874
No 306
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=94.33 E-value=0.048 Score=50.23 Aligned_cols=117 Identities=10% Similarity=0.089 Sum_probs=71.8
Q ss_pred CCceecCCHHHHHHhhccCC-eEEEEEecCCCCc------cHHHHHHHh-ccCCceeEEEe-----cCHHHHhhcCCCCC
Q 021976 162 LGTYSITTTDEAERILTVES-KLVLGFLHDLEGM------ESEELAAAS-KLHSDVNFYQT-----TSADVAEFFHIHPK 228 (304)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~-~~~v~f~~~~~~~------~~~~~~~~a-~~~~~~~f~~~-----~~~~l~~~~~i~~~ 228 (304)
.++..+ +.++++..+...+ ..+|-||.+||+. .++.++..- ....-+.++++ .|..+|+.|+|+.
T Consensus 39 D~ii~L-d~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~- 116 (606)
T KOG1731|consen 39 DPIIEL-DVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG- 116 (606)
T ss_pred CCeEEe-ehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC-
Confidence 345555 5566766665444 7888899999984 444444432 44555555543 6889999999997
Q ss_pred CCCCeEEEEecCCCc---eecccCCCCHHHHHHHHhc--------C---CCCcEEeeCc-cchhhhhcC
Q 021976 229 SKRPALIFLHLEAGK---ATPFRHQFTRLAIANFVTH--------T---KHPLVVTLTI-HNAQFVFQD 282 (304)
Q Consensus 229 ~~~P~lv~~~~~~~~---~~~y~g~~~~~~i~~fi~~--------~---~~p~~~~l~~-~~~~~~~~~ 282 (304)
+|++.+|+++-.. -..+.|.....+|.+.+.. + .-|.+.++.+ .++.+++++
T Consensus 117 --~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~ 183 (606)
T KOG1731|consen 117 --YPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEG 183 (606)
T ss_pred --CceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcc
Confidence 9999999877321 1334444444555555542 3 3454445555 455666553
No 307
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=94.31 E-value=0.2 Score=38.86 Aligned_cols=80 Identities=13% Similarity=0.196 Sum_probs=50.6
Q ss_pred CCeEEEEEecCCCCccHHHHHHHhccCC--ceeEE--Eec-------------CHHHH-hhc---CCCCCCCCCeEEEEe
Q 021976 180 ESKLVLGFLHDLEGMESEELAAASKLHS--DVNFY--QTT-------------SADVA-EFF---HIHPKSKRPALIFLH 238 (304)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~~~~~a~~~~--~~~f~--~~~-------------~~~l~-~~~---~i~~~~~~P~lv~~~ 238 (304)
.+..+|.|+.+||.++.+....+.++.. ++.+. ... ..+.. ..| ++.. .|+.++++
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~---iPTt~LID 126 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVV---TPATFLVN 126 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCC---CCeEEEEe
Confidence 4556888999999987665544432221 12221 111 12332 345 6665 99999998
Q ss_pred cCCCc-eecccCCCCHHHHHHHHhc
Q 021976 239 LEAGK-ATPFRHQFTRLAIANFVTH 262 (304)
Q Consensus 239 ~~~~~-~~~y~g~~~~~~i~~fi~~ 262 (304)
+.++. ...+.|..+.+.+.+.|.+
T Consensus 127 ~~G~~i~~~~~G~~s~~~l~~~I~~ 151 (153)
T TIGR02738 127 VNTRKAYPVLQGAVDEAELANRMDE 151 (153)
T ss_pred CCCCEEEEEeecccCHHHHHHHHHH
Confidence 87654 4467899999998887764
No 308
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=94.30 E-value=0.62 Score=37.30 Aligned_cols=35 Identities=23% Similarity=0.534 Sum_probs=28.4
Q ss_pred HHHhCCCccccEEEEEeCCeEEEEeeCCCCHHHHHHHHH
Q 021976 119 LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVR 157 (304)
Q Consensus 119 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~ 157 (304)
.+.++||.|+|++++ +|+ ..+.|....+.+.+.|+
T Consensus 159 ~a~~~gv~GvP~~vv--~g~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 159 EARQLGVFGVPTFVV--NGK--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHTTCSSSSEEEE--TTT--EEEESCSSHHHHHHHH-
T ss_pred HHHHcCCcccCEEEE--CCE--EEEECCCCHHHHHHHhC
Confidence 467789999999999 775 67889999888887764
No 309
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=94.16 E-value=0.45 Score=37.77 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=38.9
Q ss_pred cEEcChhcHHHHhcCCCcEEEEEEcCCC-hhhhhhHHHHHHHHHHhhC---CcEEEEEeCc
Q 021976 58 VVSLNGKNFSEFMGKNRNVMVMFYANWC-YWSKKLAPEFAAAAKMLKG---EADLVMVDAY 114 (304)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~lv~f~a~wC-~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~ 114 (304)
..+-+++.+...--++++++|.|.-+.| ..|-.....+.++.++++. ++.++.|.+|
T Consensus 37 L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 37 LTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp EEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred EEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 3344444444332378999999999999 6788888888888777653 6777777765
No 310
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=93.96 E-value=0.33 Score=31.44 Aligned_cols=50 Identities=12% Similarity=0.195 Sum_probs=34.5
Q ss_pred EEEEecCCCCccHHH---HHHHhccCCceeEEE---ecCHHHHhhcCCCCCCCCCeEEE
Q 021976 184 VLGFLHDLEGMESEE---LAAASKLHSDVNFYQ---TTSADVAEFFHIHPKSKRPALIF 236 (304)
Q Consensus 184 ~v~f~~~~~~~~~~~---~~~~a~~~~~~~f~~---~~~~~l~~~~~i~~~~~~P~lv~ 236 (304)
++.|+.+||....+. +..++....++.+.. ..++++++++++.. .|++++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~---vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMS---VPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcc---cCEEEE
Confidence 567899999875433 444443344566653 35678999999986 999864
No 311
>PHA02125 thioredoxin-like protein
Probab=93.69 E-value=0.34 Score=32.38 Aligned_cols=68 Identities=10% Similarity=0.080 Sum_probs=39.7
Q ss_pred EEEEecCCCCccHHHHHHHhccC-CceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCCCceecccCC-CCHHHHHH
Q 021976 184 VLGFLHDLEGMESEELAAASKLH-SDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQ-FTRLAIAN 258 (304)
Q Consensus 184 ~v~f~~~~~~~~~~~~~~~a~~~-~~~~f~~~~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~-~~~~~i~~ 258 (304)
++.|+.+||+++...-..+.... ..+.+....+++++++|++.+ .|+++ .+ +....+.|. .+...|++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~~~~~~vd~~~~~~l~~~~~v~~---~PT~~---~g-~~~~~~~G~~~~~~~l~~ 71 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVEYTYVDVDTDEGVELTAKHHIRS---LPTLV---NT-STLDRFTGVPRNVAELKE 71 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHhheEEeeeCCCCHHHHHHcCCce---eCeEE---CC-EEEEEEeCCCCcHHHHHH
Confidence 67899999998653322222111 122333446789999999997 99987 22 223355562 33344443
No 312
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=1.1 Score=34.31 Aligned_cols=129 Identities=14% Similarity=0.155 Sum_probs=83.5
Q ss_pred CcEEcChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCccc-----------HHHHH-hC
Q 021976 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE-----------KDLAK-EY 123 (304)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~-----------~~~~~-~~ 123 (304)
.+..++++.+.-.--+++++||-=.|+-|+.--+. ..++.+.++|++ ++.+...-|.+- .++|+ .|
T Consensus 9 ~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~Y 87 (162)
T COG0386 9 SVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQY-EGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNY 87 (162)
T ss_pred eeeccCCCCccHHHhCCcEEEEEEcccccCCcHhH-HHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhcc
Confidence 34445555444333478999999999999876543 467888888877 888888888531 24565 57
Q ss_pred CCccccEEEEEe-CCeEEEEeeCCCCHHHHHHHHHHHhCCC--ceecCCHHHHHHhhccCCeEEEEEecCCCCccHHH
Q 021976 124 NILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMTLG--TYSITTTDEAERILTVESKLVLGFLHDLEGMESEE 198 (304)
Q Consensus 124 ~v~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~~~--~~~l~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~ 198 (304)
||+ +|.+--.+ +| ..+..+.+||.+..+.. ...| .=++.+|+-+.+-.+|.=|++...|....
T Consensus 88 gVt-Fp~f~Ki~VnG---------~~a~PLy~~L~~~~~g~~~~~~I--kWNFtKFLvdr~G~VV~Rf~p~t~P~d~~ 153 (162)
T COG0386 88 GVT-FPMFSKIDVNG---------KNAHPLYKYLKEQKPGKLGGKDI--KWNFTKFLVDRDGNVVKRFSPKTKPEDIE 153 (162)
T ss_pred Cce-eeeeeEEeecC---------CCCCcHHHHHHhcCCCCccCCcc--ceeeEEEEEcCCCcEEEeeCCCCChhhHH
Confidence 765 67654443 44 35567888988776432 1111 22466777776667778788877765433
No 313
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=93.43 E-value=0.017 Score=47.09 Aligned_cols=101 Identities=13% Similarity=0.155 Sum_probs=69.6
Q ss_pred ceecCCHHHHHHhhccCCeEEEEEecCCCCcc---HHHHHHHh----ccCCcee-EEEecCHHHHhhcCCCCCCCCCeEE
Q 021976 164 TYSITTTDEAERILTVESKLVLGFLHDLEGME---SEELAAAS----KLHSDVN-FYQTTSADVAEFFHIHPKSKRPALI 235 (304)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~v~f~~~~~~~~---~~~~~~~a----~~~~~~~-f~~~~~~~l~~~~~i~~~~~~P~lv 235 (304)
++.+ ++++...++ ...+++.|+.+||..+ ...+...| .+.-++. +..+.++.|.-+|-++. +|+|+
T Consensus 26 ~~~~-~eenw~~~l--~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vta---LptIY 99 (248)
T KOG0913|consen 26 LTRI-DEENWKELL--TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTA---LPTIY 99 (248)
T ss_pred eEEe-cccchhhhh--chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEe---cceEE
Confidence 3444 566777776 4458888999998653 22233333 2333333 33678999999999997 99866
Q ss_pred EEecCCCceecccCCCCHHHHHHHHhcCCCCcEEeeC
Q 021976 236 FLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLT 272 (304)
Q Consensus 236 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~~~~l~ 272 (304)
=-+ ++..-+|.|.+|.+++++|+....-..+..++
T Consensus 100 Hvk--DGeFrrysgaRdk~dfisf~~~r~w~~i~p~p 134 (248)
T KOG0913|consen 100 HVK--DGEFRRYSGARDKNDFISFEEHREWQSIDPVP 134 (248)
T ss_pred Eee--ccccccccCcccchhHHHHHHhhhhhccCCcc
Confidence 444 44899999999999999999986655554433
No 314
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=0.95 Score=37.93 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=28.4
Q ss_pred HHHHhCCCccccEEEEEeCCeEEEEeeCCCCHHHHHHHHHHH
Q 021976 118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159 (304)
Q Consensus 118 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (304)
.+++++||.++||+++ +|+ .+.|..+.+++.+.+...
T Consensus 206 ~~a~~~gv~gTPt~~v--~~~---~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 206 KLAQQLGVNGTPTFIV--NGK---LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHhcCCCcCCeEEE--CCe---eecCCCCHHHHHHHHHHh
Confidence 3567789999999877 443 788888888888887654
No 315
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=92.67 E-value=0.56 Score=33.43 Aligned_cols=67 Identities=7% Similarity=0.131 Sum_probs=41.0
Q ss_pred CCeEEEEEecCCCCccHHHHHHHh----ccC-CceeEEEe---cC-----------------------HHHHhhcCCCCC
Q 021976 180 ESKLVLGFLHDLEGMESEELAAAS----KLH-SDVNFYQT---TS-----------------------ADVAEFFHIHPK 228 (304)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~~~~~a----~~~-~~~~f~~~---~~-----------------------~~l~~~~~i~~~ 228 (304)
++.+++.|+.+||..+......+. .+. .++.+..+ .+ .++.+.|++.+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 97 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG- 97 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc-
Confidence 567788888888876544433332 221 33444432 22 67888888875
Q ss_pred CCCCeEEEEecCCCceecccC
Q 021976 229 SKRPALIFLHLEAGKATPFRH 249 (304)
Q Consensus 229 ~~~P~lv~~~~~~~~~~~y~g 249 (304)
.|+++++.+++.....|.|
T Consensus 98 --~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 --LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred --cceEEEECCCCcEEEEecC
Confidence 8999888776655555443
No 316
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=92.14 E-value=0.85 Score=36.31 Aligned_cols=77 Identities=12% Similarity=0.122 Sum_probs=61.3
Q ss_pred CCceecCCHHHHHHhhccCCeEEEEEecCC---CCccHHHHHHHhccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEE
Q 021976 162 LGTYSITTTDEAERILTVESKLVLGFLHDL---EGMESEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALI 235 (304)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~~~~v~f~~~~---~~~~~~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~P~lv 235 (304)
....++.++.++-+....+..+++-||.+. |.-.-+-+..+|..+-..+|..+ .-|=++.+++|.- +|+++
T Consensus 66 G~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkV---LP~v~ 142 (211)
T KOG1672|consen 66 GEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKV---LPTVA 142 (211)
T ss_pred ceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeE---eeeEE
Confidence 457788888888888877888888898875 44456778888887788888765 4566999999997 99999
Q ss_pred EEecCC
Q 021976 236 FLHLEA 241 (304)
Q Consensus 236 ~~~~~~ 241 (304)
+|+++.
T Consensus 143 l~k~g~ 148 (211)
T KOG1672|consen 143 LFKNGK 148 (211)
T ss_pred EEEcCE
Confidence 999874
No 317
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=92.09 E-value=0.86 Score=31.40 Aligned_cols=74 Identities=22% Similarity=0.224 Sum_probs=58.7
Q ss_pred CcEEEEEEcCCChhhhhhHHHHHHHHHHh-hCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEEEEeeCCCC
Q 021976 74 RNVMVMFYANWCYWSKKLAPEFAAAAKML-KGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERT 148 (304)
Q Consensus 74 ~~~lv~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~ 148 (304)
..++=.|.|..-+.+++....+.++-+.+ .+...+-.||..+++++++.++|-.+||++=...+ ...+..|..+
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~-P~rriiGdls 77 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPP-PVRKIIGDLS 77 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC-Ccceeecccc
Confidence 34566778888888888888888886655 44788889999999999999999999997655455 6677788765
No 318
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=92.03 E-value=1.1 Score=37.47 Aligned_cols=59 Identities=12% Similarity=-0.023 Sum_probs=39.3
Q ss_pred hcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEe
Q 021976 70 MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (304)
Q Consensus 70 ~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 135 (304)
..++|+.+++.-+-|||.|-..+-.+-.+-.++. .+.+.-...+. .-.-..+|++.+..
T Consensus 55 ~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG-n~~l~~~~S~~------~d~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 55 APNGKPEVIFIGWEGCPYCAAESWALYIALSRFG-NFSLEYHYSDP------YDNYPNTPTLIFNN 113 (249)
T ss_pred CCCCeeEEEEEecccCccchhhHHHHHHHHHhcC-CeeeEEeecCc------ccCCCCCCeEEEec
Confidence 3678999999999999999998877777666676 33221111111 11124789987775
No 319
>PRK09301 circadian clock protein KaiB; Provisional
Probab=91.74 E-value=0.87 Score=32.38 Aligned_cols=75 Identities=21% Similarity=0.229 Sum_probs=60.5
Q ss_pred CCcEEEEEEcCCChhhhhhHHHHHHHHHHh-hCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEEEEeeCCCC
Q 021976 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKML-KGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERT 148 (304)
Q Consensus 73 ~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~ 148 (304)
+..+|=.|.|..-+..++....+.++-+.+ .+...+-.||..+++++++.++|-.+||++=...+ ...+..|..+
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~-P~rriiGDls 80 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPP-PVRKIIGDLS 80 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCC-Ccceeecccc
Confidence 356777888888888888888888886655 44788889999999999999999999996554455 6677888765
No 320
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=91.74 E-value=0.98 Score=46.35 Aligned_cols=81 Identities=9% Similarity=0.025 Sum_probs=57.0
Q ss_pred CCeEEEEEecCCCCccHHH---HHHHh-ccCCc-eeEEEe------------------------------cCHHHHhhcC
Q 021976 180 ESKLVLGFLHDLEGMESEE---LAAAS-KLHSD-VNFYQT------------------------------TSADVAEFFH 224 (304)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~---~~~~a-~~~~~-~~f~~~------------------------------~~~~l~~~~~ 224 (304)
.++++|.|+.+||.++... +.++. ++.++ +.+..+ .+.++.+.|+
T Consensus 420 GK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~ 499 (1057)
T PLN02919 420 GKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELG 499 (1057)
T ss_pred CCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhcC
Confidence 6789999999999986554 33333 23322 222211 2335778889
Q ss_pred CCCCCCCCeEEEEecCCCceecccCCCCHHHHHHHHhcC
Q 021976 225 IHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (304)
Q Consensus 225 i~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 263 (304)
+.. .|+++++.+.+.....+.|+...+.+.++|...
T Consensus 500 V~~---iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 500 VSS---WPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred CCc---cceEEEECCCCeEEEEEecccCHHHHHHHHHHH
Confidence 886 999999977766777788998889999988853
No 321
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=91.70 E-value=1.2 Score=29.58 Aligned_cols=60 Identities=25% Similarity=0.313 Sum_probs=47.6
Q ss_pred EEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcccHHHHHhCCCccccEEEEEe
Q 021976 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (304)
Q Consensus 76 ~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 135 (304)
.+..|-+..-+.+++....+.++-+++.+ ...+-.||..+++++++.++|-.+||++=..
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~ 63 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKVL 63 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhcC
Confidence 34555566567888888888887777644 7889999999999999999999999975443
No 322
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=91.59 E-value=3.1 Score=29.26 Aligned_cols=74 Identities=15% Similarity=0.073 Sum_probs=52.6
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCe-EEEEeeCCCCHH
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV-RQFQFFGERTRD 150 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~g~~~~~ 150 (304)
++.+.++.|..+. ..|++....++++++.-+ ++.+-..+... ..|++.+..+|+ .-.+|.|...-.
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd-kI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~Gh 84 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLSD-KITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMGH 84 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC-ceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCch
Confidence 3556677777665 899999888888888665 55554433211 479999987763 347899988888
Q ss_pred HHHHHHHH
Q 021976 151 VISAWVRE 158 (304)
Q Consensus 151 ~l~~~i~~ 158 (304)
++..++..
T Consensus 85 Ef~Slila 92 (94)
T cd02974 85 EFTSLVLA 92 (94)
T ss_pred hHHHHHHH
Confidence 88888754
No 323
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.23 E-value=0.62 Score=37.78 Aligned_cols=75 Identities=20% Similarity=0.189 Sum_probs=49.9
Q ss_pred cCCHHHHHHhhc--cCCeEEEEEecCCCCc---cHHHHHHHh-c-cCCceeEEEe---cCHHHHhhcCCCC---CCCCCe
Q 021976 167 ITTTDEAERILT--VESKLVLGFLHDLEGM---ESEELAAAS-K-LHSDVNFYQT---TSADVAEFFHIHP---KSKRPA 233 (304)
Q Consensus 167 l~~~~~~~~~~~--~~~~~~v~f~~~~~~~---~~~~~~~~a-~-~~~~~~f~~~---~~~~l~~~~~i~~---~~~~P~ 233 (304)
+++.+.+++.++ ....|+|-||..|+.. ....|++++ + .-...+|+.+ -.++++.+|+|.. ...+|+
T Consensus 129 f~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT 208 (265)
T KOG0914|consen 129 FTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPT 208 (265)
T ss_pred ecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCe
Confidence 334444444443 3558999999877653 455566665 2 3345566644 6788999999863 367999
Q ss_pred EEEEecCC
Q 021976 234 LIFLHLEA 241 (304)
Q Consensus 234 lv~~~~~~ 241 (304)
+++|+.+.
T Consensus 209 ~ilFq~gk 216 (265)
T KOG0914|consen 209 YILFQKGK 216 (265)
T ss_pred EEEEccch
Confidence 99999875
No 324
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=90.93 E-value=1 Score=34.64 Aligned_cols=53 Identities=8% Similarity=0.197 Sum_probs=37.3
Q ss_pred EEEEEcC------CChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHH----HHhCCC----ccccEEEEEeCC
Q 021976 77 MVMFYAN------WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL----AKEYNI----LAYPTLYLFVAG 137 (304)
Q Consensus 77 lv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v----~~~Pt~~~~~~g 137 (304)
+|.|.++ +|++|++....|+.. ++.+-.+|++.+++. .+.++- ..+|.+++ +|
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G 68 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DG 68 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CC
Confidence 4556677 899999988777653 577888998776543 344454 57888765 66
No 325
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=90.22 E-value=1.2 Score=35.53 Aligned_cols=77 Identities=9% Similarity=0.084 Sum_probs=48.6
Q ss_pred EEEEecCCCCccHHHHHHHhccCC--ceeEE-E-------------e--cCHHHHhhcCC-CCCCCCCeEEEEecCCCce
Q 021976 184 VLGFLHDLEGMESEELAAASKLHS--DVNFY-Q-------------T--TSADVAEFFHI-HPKSKRPALIFLHLEAGKA 244 (304)
Q Consensus 184 ~v~f~~~~~~~~~~~~~~~a~~~~--~~~f~-~-------------~--~~~~l~~~~~i-~~~~~~P~lv~~~~~~~~~ 244 (304)
+|.|+.+||.++.++...+.++.. .+.+. . . ....+.+.|++ . ..+|+.+++.+++...
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~--~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIP--VATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCC--CCCCeEEEEeCCCcEE
Confidence 666999999886655433322111 12221 1 1 12346778884 2 1499999998887654
Q ss_pred -ecccCCCCHHHHHHHHhc
Q 021976 245 -TPFRHQFTRLAIANFVTH 262 (304)
Q Consensus 245 -~~y~g~~~~~~i~~fi~~ 262 (304)
..+-|..+.+++.+.|.+
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ 169 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDT 169 (181)
T ss_pred EEEEECCCCHHHHHHHHHH
Confidence 478899998888777764
No 326
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.06 E-value=5.1 Score=30.88 Aligned_cols=88 Identities=16% Similarity=0.274 Sum_probs=57.2
Q ss_pred HHHHHhhccCCeEEEEEecCCCCccH---------HHHHHHhccCCceeEE-------------------EecCHHHHhh
Q 021976 171 DEAERILTVESKLVLGFLHDLEGMES---------EELAAASKLHSDVNFY-------------------QTTSADVAEF 222 (304)
Q Consensus 171 ~~~~~~~~~~~~~~v~f~~~~~~~~~---------~~~~~~a~~~~~~~f~-------------------~~~~~~l~~~ 222 (304)
++..+....++-.+++|-++.|.-+. +.+++. +.+++.++ ..+.++|+..
T Consensus 33 ~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEy--lk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~k 110 (182)
T COG2143 33 DDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREY--LKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQK 110 (182)
T ss_pred HHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHH--HhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHH
Confidence 44455555677788888888886422 222222 22222211 1355699999
Q ss_pred cCCCCCCCCCeEEEEecCCCceecccCCCCHH---HHHHHHhcC
Q 021976 223 FHIHPKSKRPALIFLHLEAGKATPFRHQFTRL---AIANFVTHT 263 (304)
Q Consensus 223 ~~i~~~~~~P~lv~~~~~~~~~~~y~g~~~~~---~i~~fi~~~ 263 (304)
|++++ -|++++|+..++.-....|..+.+ .+.++|.+.
T Consensus 111 f~vrs---tPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g 151 (182)
T COG2143 111 FAVRS---TPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVADG 151 (182)
T ss_pred hcccc---CceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 99997 999999998887778888888765 455566543
No 327
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=90.00 E-value=2.1 Score=30.83 Aligned_cols=74 Identities=19% Similarity=0.154 Sum_probs=46.1
Q ss_pred CceecCCHHHHHHhhccCCeEEEEEecCCC-Cc----cHHHHHHHh-ccCCceeEEEe---cCHHHHhhcCCCCCCCCCe
Q 021976 163 GTYSITTTDEAERILTVESKLVLGFLHDLE-GM----ESEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPA 233 (304)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~v~f~~~~~-~~----~~~~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~P~ 233 (304)
....+ +.++++.++......++.|..+.. .+ ..-.+-++. .+.+....+.+ ..+++..+||+.. .|+
T Consensus 10 g~~~v-d~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~---~Pa 85 (107)
T PF07449_consen 10 GWPRV-DADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRR---WPA 85 (107)
T ss_dssp TEEEE--CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TS---SSE
T ss_pred CCeee-chhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCcc---CCe
Confidence 34444 356788888877766665433211 12 233445554 35555555443 5678999999986 999
Q ss_pred EEEEecC
Q 021976 234 LIFLHLE 240 (304)
Q Consensus 234 lv~~~~~ 240 (304)
+++++.+
T Consensus 86 Lvf~R~g 92 (107)
T PF07449_consen 86 LVFFRDG 92 (107)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 9999987
No 328
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=89.90 E-value=1.1 Score=33.33 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=37.3
Q ss_pred CCeEEEEEecCCCCccHHHHHH---Hh-ccCC---ceeEEEe--c-------------------------CHHHHhhcCC
Q 021976 180 ESKLVLGFLHDLEGMESEELAA---AS-KLHS---DVNFYQT--T-------------------------SADVAEFFHI 225 (304)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~~~~---~a-~~~~---~~~f~~~--~-------------------------~~~l~~~~~i 225 (304)
+++++|.|+.+||.++...... +. .+.. ++.+..+ . ...+++.|++
T Consensus 18 gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 97 (131)
T cd03009 18 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKI 97 (131)
T ss_pred CcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCC
Confidence 5678888999999875544333 22 2221 2332211 1 1357889999
Q ss_pred CCCCCCCeEEEEecCC
Q 021976 226 HPKSKRPALIFLHLEA 241 (304)
Q Consensus 226 ~~~~~~P~lv~~~~~~ 241 (304)
.. .|+++++++++
T Consensus 98 ~~---~P~~~lid~~G 110 (131)
T cd03009 98 EG---IPTLIILDADG 110 (131)
T ss_pred CC---CCEEEEECCCC
Confidence 86 99999998665
No 329
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=89.62 E-value=1.6 Score=37.46 Aligned_cols=156 Identities=13% Similarity=0.067 Sum_probs=87.9
Q ss_pred CcccHHHHHhCCCccccEEEEEeCCeEEEEeeCCCCHHHHHHHHHHHhCCCceecCCHHHHHH----hhccCCeEEEEEe
Q 021976 113 AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAER----ILTVESKLVLGFL 188 (304)
Q Consensus 113 ~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~----~~~~~~~~~v~f~ 188 (304)
|+-.++.+++++|.-+|--+.+. |+..... -..+.+++.+.+.+....+.+.-.+..++.+ +.++.+.+++.-.
T Consensus 9 ~dl~~~~~~~~~I~vvPl~I~~~-~~~y~D~-~~i~~~~~y~~~~~~~~~p~TS~ps~~~~~~~~~~l~~~~~~vi~i~i 86 (275)
T TIGR00762 9 ADLPPELIEEYGITVVPLTVIID-GKTYRDG-VDITPEEFYEKLKESKELPKTSQPSPGEFLELYEKLLEEGDEVLSIHL 86 (275)
T ss_pred cCCCHHHHHHcCCEEEEEEEEEC-CEEeecC-CCCCHHHHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHhCCCeEEEEEc
Confidence 44557889999999999887764 5333331 2478899999997643333333344554443 3344544444444
Q ss_pred cCCCCccHHHHHHHhccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCCCceecccCCCCHHHHHHHHhcCCCCcE
Q 021976 189 HDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLV 268 (304)
Q Consensus 189 ~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~~ 268 (304)
+..-+..+.....+++.....++....+..+.-..+.-. .. .....+...+.+++.+|+++.+....
T Consensus 87 Ss~lSgty~~a~~aa~~~~~~~i~ViDS~~~s~~~g~~v---------~~----a~~~~~~G~s~~eI~~~l~~~~~~~~ 153 (275)
T TIGR00762 87 SSGLSGTYQSARQAAEMVDEAKVTVIDSKSASMGLGLLV---------LE----AAKLAEEGKSLEEILAKLEELRERTK 153 (275)
T ss_pred CCchhHHHHHHHHHHhhCCCCCEEEECChHHHHHHHHHH---------HH----HHHHHHcCCCHHHHHHHHHHHHhhcE
Confidence 444455555555555433333454444444333333210 00 00111222477888888888777777
Q ss_pred EeeCccchhhhhcCC
Q 021976 269 VTLTIHNAQFVFQDP 283 (304)
Q Consensus 269 ~~l~~~~~~~~~~~~ 283 (304)
..+..+++..+..++
T Consensus 154 ~~f~v~~L~~L~~gG 168 (275)
T TIGR00762 154 LYFVVDTLEYLVKGG 168 (275)
T ss_pred EEEEECcHHHHHhcC
Confidence 777777777777654
No 330
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=89.43 E-value=1.5 Score=30.48 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=15.3
Q ss_pred CHHHHhhcCCCCCCCCCeEEEEecCC
Q 021976 216 SADVAEFFHIHPKSKRPALIFLHLEA 241 (304)
Q Consensus 216 ~~~l~~~~~i~~~~~~P~lv~~~~~~ 241 (304)
...+.+.|++.. .|+++++.+++
T Consensus 71 ~~~l~~~~~i~~---iP~~~lld~~G 93 (95)
T PF13905_consen 71 NSELLKKYGING---IPTLVLLDPDG 93 (95)
T ss_dssp HHHHHHHTT-TS---SSEEEEEETTS
T ss_pred HHHHHHHCCCCc---CCEEEEECCCC
Confidence 345777777775 78888777654
No 331
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=88.97 E-value=2.2 Score=31.30 Aligned_cols=86 Identities=13% Similarity=0.120 Sum_probs=50.6
Q ss_pred HHhhccCCeEEEEEecCCC----CccHHHHHHHh---ccCCceeEE-E-e---cCHHHHhhcCCCCCCCCCeEEEEecCC
Q 021976 174 ERILTVESKLVLGFLHDLE----GMESEELAAAS---KLHSDVNFY-Q-T---TSADVAEFFHIHPKSKRPALIFLHLEA 241 (304)
Q Consensus 174 ~~~~~~~~~~~v~f~~~~~----~~~~~~~~~~a---~~~~~~~f~-~-~---~~~~l~~~~~i~~~~~~P~lv~~~~~~ 241 (304)
+...++.+..+|.++++.+ ..+...+..-. -+..++.+. . + +..+++..++++. +|.++++...+
T Consensus 11 ~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~---~P~~~~l~~~~ 87 (116)
T cd02991 11 NDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINTRMLFWACSVAKPEGYRVSQALRERT---YPFLAMIMLKD 87 (116)
T ss_pred HHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCC---CCEEEEEEecC
Confidence 4444456667776776633 22322222211 123333332 2 1 3346999999996 99999995444
Q ss_pred Cc---eecccCCCCHHHHHHHHhc
Q 021976 242 GK---ATPFRHQFTRLAIANFVTH 262 (304)
Q Consensus 242 ~~---~~~y~g~~~~~~i~~fi~~ 262 (304)
++ ..+..|..+.+++..-+..
T Consensus 88 ~~~~vv~~i~G~~~~~~ll~~L~~ 111 (116)
T cd02991 88 NRMTIVGRLEGLIQPEDLINRLTF 111 (116)
T ss_pred CceEEEEEEeCCCCHHHHHHHHHH
Confidence 33 4567899999888776653
No 332
>PF13728 TraF: F plasmid transfer operon protein
Probab=88.72 E-value=4.1 Score=33.56 Aligned_cols=76 Identities=11% Similarity=0.025 Sum_probs=49.6
Q ss_pred CCeEEEEEecCCCCccHHH---HHHHhccCCceeEEEe-------------cCHHHHhhcCCCCCCCCCeEEEEecCCCc
Q 021976 180 ESKLVLGFLHDLEGMESEE---LAAASKLHSDVNFYQT-------------TSADVAEFFHIHPKSKRPALIFLHLEAGK 243 (304)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~---~~~~a~~~~~~~f~~~-------------~~~~l~~~~~i~~~~~~P~lv~~~~~~~~ 243 (304)
++.-++.||+..|.-+... +...+...+--.+..+ .+.++++++|+.. .|++++..+....
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~---~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKV---TPALFLVNPNTKK 196 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCc---CCEEEEEECCCCe
Confidence 5567888899988764333 4444422222222222 2578999999986 9999999988744
Q ss_pred eec-ccCCCCHHHHHH
Q 021976 244 ATP-FRHQFTRLAIAN 258 (304)
Q Consensus 244 ~~~-y~g~~~~~~i~~ 258 (304)
... -.|-.+.++|.+
T Consensus 197 ~~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 197 WYPVSQGFMSLDELED 212 (215)
T ss_pred EEEEeeecCCHHHHHH
Confidence 443 357788887765
No 333
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=87.97 E-value=2.4 Score=31.83 Aligned_cols=75 Identities=9% Similarity=0.010 Sum_probs=41.5
Q ss_pred HHHHHhhccCCeEEEEEecCCCCccHHHHHHH------hc-cCCcee---EEEe-cCHHHHhhcCCCCCCCCCeEEEEec
Q 021976 171 DEAERILTVESKLVLGFLHDLEGMESEELAAA------SK-LHSDVN---FYQT-TSADVAEFFHIHPKSKRPALIFLHL 239 (304)
Q Consensus 171 ~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~------a~-~~~~~~---f~~~-~~~~l~~~~~i~~~~~~P~lv~~~~ 239 (304)
+.+....+++++++|.|+.+||..+...-... .+ ...++. +... ++.... ..+ ..+|+++++.+
T Consensus 14 eal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g----~~vPtivFld~ 88 (130)
T cd02960 14 EGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG----QYVPRIMFVDP 88 (130)
T ss_pred HHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC----cccCeEEEECC
Confidence 34556666788999999999998753332221 11 112222 1111 111111 122 35999999988
Q ss_pred CCCceecccCC
Q 021976 240 EAGKATPFRHQ 250 (304)
Q Consensus 240 ~~~~~~~y~g~ 250 (304)
.+.......|.
T Consensus 89 ~g~vi~~i~Gy 99 (130)
T cd02960 89 SLTVRADITGR 99 (130)
T ss_pred CCCCccccccc
Confidence 77666665554
No 334
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=87.54 E-value=2.3 Score=31.48 Aligned_cols=20 Identities=15% Similarity=-0.056 Sum_probs=14.1
Q ss_pred CCeEEEEEecCCCCccHHHH
Q 021976 180 ESKLVLGFLHDLEGMESEEL 199 (304)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~~ 199 (304)
.+++++.|+..||.++...+
T Consensus 23 gk~vvl~F~a~~C~~C~~~~ 42 (126)
T cd03012 23 GKVVLLDFWTYCCINCLHTL 42 (126)
T ss_pred CCEEEEEEECCCCccHHHHH
Confidence 46788888888887654443
No 335
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=87.43 E-value=4.9 Score=25.87 Aligned_cols=68 Identities=7% Similarity=-0.006 Sum_probs=41.6
Q ss_pred EEEEecCCCCccHHHHHHHhccCCceeEEE-ecCHH----HHhhcCCCCCCCCCeEEEEecCCCceecccCCCCHHHHHH
Q 021976 184 VLGFLHDLEGMESEELAAASKLHSDVNFYQ-TTSAD----VAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIAN 258 (304)
Q Consensus 184 ~v~f~~~~~~~~~~~~~~~a~~~~~~~f~~-~~~~~----l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~i~~ 258 (304)
+.+|+.+||.........+....-.+.... ..+++ +.+.+++.. .|++++. + + .+.| .+.+.|.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~---vP~~~~~--~--~--~~~g-~~~~~i~~ 71 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRG---VPVIVIG--H--K--IIVG-FDPEKLDQ 71 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCc---ccEEEEC--C--E--EEee-CCHHHHHH
Confidence 456888999887666554443322222222 23333 556788875 9998864 2 2 2555 57889998
Q ss_pred HHh
Q 021976 259 FVT 261 (304)
Q Consensus 259 fi~ 261 (304)
||+
T Consensus 72 ~i~ 74 (74)
T TIGR02196 72 LLE 74 (74)
T ss_pred HhC
Confidence 874
No 336
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=87.15 E-value=4.8 Score=28.91 Aligned_cols=19 Identities=16% Similarity=-0.015 Sum_probs=14.1
Q ss_pred CCeEEEEEecCCCCccHHH
Q 021976 180 ESKLVLGFLHDLEGMESEE 198 (304)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~ 198 (304)
.++++|.|+.+||.++.+.
T Consensus 21 gk~vvl~F~~~wC~~C~~~ 39 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKL 39 (114)
T ss_pred CCeEEEEEECCCCcchHhH
Confidence 5678888899999875443
No 337
>PHA03075 glutaredoxin-like protein; Provisional
Probab=87.12 E-value=1.1 Score=32.47 Aligned_cols=36 Identities=8% Similarity=0.299 Sum_probs=29.3
Q ss_pred CcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeC
Q 021976 74 RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113 (304)
Q Consensus 74 ~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~ 113 (304)
|.++|.|.-|.|+-|+.....+.++..+|. +.+||+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~----ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD----ILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc----EEEEEe
Confidence 568999999999999999988877777664 566663
No 338
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=86.69 E-value=1.9 Score=32.39 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=36.4
Q ss_pred eCcccHHHHHhCCCccccEEEEEeCCe-----------EEEEeeCCCCHHHHHHHHHHHh
Q 021976 112 DAYLEKDLAKEYNILAYPTLYLFVAGV-----------RQFQFFGERTRDVISAWVREKM 160 (304)
Q Consensus 112 d~~~~~~~~~~~~v~~~Pt~~~~~~g~-----------~~~~~~g~~~~~~l~~~i~~~~ 160 (304)
+..-++.+.++|+|+.+|++++.+++. ......|..+.+.-.+.+.+.-
T Consensus 56 ~v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~g 115 (130)
T TIGR02742 56 GVQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQDG 115 (130)
T ss_pred cEEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHhC
Confidence 333469999999999999999998663 2456668888777666666443
No 339
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=86.45 E-value=3.5 Score=27.31 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=41.8
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCc--ccHHHHHhCCCccccEEEEEeCCeEEEEeeCCCCHHHHHH
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY--LEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISA 154 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 154 (304)
+..|+.+.|+.|++.+-.+... ++.+-.++.+ ...++ +.-+-..+|++..-..|.... -.....|.+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~------gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~----l~eS~~I~~ 70 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH------GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQ----LVDSSVIIS 70 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC------CCceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccE----EEcHHHHHH
Confidence 4567889999999988555443 3333333333 22233 334556789886532211111 235567888
Q ss_pred HHHHHhC
Q 021976 155 WVREKMT 161 (304)
Q Consensus 155 ~i~~~~~ 161 (304)
|+.+.++
T Consensus 71 yL~~~~~ 77 (77)
T cd03040 71 TLKTYLG 77 (77)
T ss_pred HHHHHcC
Confidence 8877653
No 340
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=85.79 E-value=2.2 Score=27.92 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=33.2
Q ss_pred EEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcc-cHHHHHhCCCccccEEEE
Q 021976 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-EKDLAKEYNILAYPTLYL 133 (304)
Q Consensus 78 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~ 133 (304)
+.|+.+||+.|++..-.+.+..- .+....+|... .+++.+......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl----~~e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI----TVELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC----CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 45788999999987655544322 34455666543 345555556678999853
No 341
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=85.64 E-value=5.9 Score=31.81 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=29.0
Q ss_pred cCHHHHhhcCCCCCCCCCeEEEEecCCCceecccCCC-CHHHHHHHHhc
Q 021976 215 TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQF-TRLAIANFVTH 262 (304)
Q Consensus 215 ~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~~-~~~~i~~fi~~ 262 (304)
.+.++.+.|++.. .|+.+++.+++ ...+.|.. ..+.+.++++.
T Consensus 134 ~~~~i~~~y~v~~---~P~~~lID~~G--~I~~~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 134 VSAEIGMAFQVGK---IPYGVLLDQDG--KIRAKGLTNTREHLESLLEA 177 (189)
T ss_pred chhHHHHhccCCc---cceEEEECCCC--eEEEccCCCCHHHHHHHHHH
Confidence 3567888999886 89988887664 33344543 44667777663
No 342
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=85.06 E-value=0.65 Score=36.91 Aligned_cols=37 Identities=27% Similarity=0.405 Sum_probs=16.2
Q ss_pred cHHHHHhCCCccccEEEEEe--CCeEEEEeeCCCCHHHH
Q 021976 116 EKDLAKEYNILAYPTLYLFV--AGVRQFQFFGERTRDVI 152 (304)
Q Consensus 116 ~~~~~~~~~v~~~Pt~~~~~--~g~~~~~~~g~~~~~~l 152 (304)
+..+++++||+++||++++. +++......|..+.+.+
T Consensus 136 D~~la~~m~I~~~Ptlvi~~~~~~~~g~~i~g~~~~~~~ 174 (176)
T PF13743_consen 136 DQQLAREMGITGFPTLVIFNENNEEYGILIEGYYSYEVY 174 (176)
T ss_dssp HHHHHHHTT-SSSSEEEEE--------------------
T ss_pred HHHHHHHcCCCCCCEEEEEeccccccccccccccccccc
Confidence 45789999999999999998 33344556676665544
No 343
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=84.95 E-value=1.1 Score=32.07 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=24.3
Q ss_pred EEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCccc
Q 021976 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (304)
Q Consensus 78 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 116 (304)
..|+.++|+.|++....+++. ++.+-.+|..++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~ 34 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKE 34 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccC
Confidence 568899999999987666552 566777777553
No 344
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=84.26 E-value=9.5 Score=25.13 Aligned_cols=72 Identities=17% Similarity=0.109 Sum_probs=47.5
Q ss_pred EEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcc-cHHHHHhCCCccccEEEEEeCCeEEEEeeCCCCHHHHHHHHH
Q 021976 79 MFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVR 157 (304)
Q Consensus 79 ~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~ 157 (304)
.++.++|+.|++..-.++...- ...+..++..+ ...+.+...-..+|++. .+|..+ .+...|.+|+.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i----~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l------~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI----PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL------TDSAAIIEYLE 68 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE----EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE------ESHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC----eEEEeccCcccchhHHHhhcccccceEEE--ECCEEE------eCHHHHHHHHH
Confidence 4678999999997644433221 34556666554 35666666777899997 557422 25678999998
Q ss_pred HHhCC
Q 021976 158 EKMTL 162 (304)
Q Consensus 158 ~~~~~ 162 (304)
+..+.
T Consensus 69 ~~~~~ 73 (75)
T PF13417_consen 69 ERYPG 73 (75)
T ss_dssp HHSTS
T ss_pred HHcCC
Confidence 87654
No 345
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=83.65 E-value=4.1 Score=31.70 Aligned_cols=128 Identities=11% Similarity=0.126 Sum_probs=81.8
Q ss_pred CcEEcChhcHHHHhcCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc--------cHH----HHHhC
Q 021976 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL--------EKD----LAKEY 123 (304)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~--------~~~----~~~~~ 123 (304)
.+.+++++.+.--.-+++++||-=-|+.|+.-..-...+..+.++|++ ++.++..-|.+ +.+ ++.+|
T Consensus 18 ~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r~ 97 (171)
T KOG1651|consen 18 SAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKVRY 97 (171)
T ss_pred EEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHhcc
Confidence 445555544443334688888888899999988777799999999977 88899988853 222 34566
Q ss_pred CCccccEEEEEeCCeEEEEeeCCCCHHHHHHHHHHHhCCCceecCCHHHHHHhhccCCeEEEEEecCCCCc
Q 021976 124 NILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGM 194 (304)
Q Consensus 124 ~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~f~~~~~~~ 194 (304)
+.. +|-+-=. ..+|. .+..+.+|+++..+..+.. .-.=++.+|+-+.+-.+|.=|.+..++
T Consensus 98 ~~~-f~if~Ki-------dVNG~-~~~PlykfLK~~~~~~lg~-~IkWNF~KFLVd~~G~vv~Ry~ptt~p 158 (171)
T KOG1651|consen 98 GAE-FPIFQKI-------DVNGD-NADPLYKFLKKVKGGPLGD-DIKWNFTKFLVDKDGHVVKRFSPTTSP 158 (171)
T ss_pred CCC-CccEeEE-------ecCCC-CCchHHHHHhhcCCCcccc-cceeeeEEEeECCCCcEEEeeCCCCCc
Confidence 644 3333222 23333 6678999998877653322 112256677766666666666655544
No 346
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=83.19 E-value=7.7 Score=28.87 Aligned_cols=59 Identities=14% Similarity=0.092 Sum_probs=36.8
Q ss_pred CCeEEEEEecCCCCccHHHHHHH---h-ccCC---ceeEEEe--c--------------------------CHHHHhhcC
Q 021976 180 ESKLVLGFLHDLEGMESEELAAA---S-KLHS---DVNFYQT--T--------------------------SADVAEFFH 224 (304)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~~~~~---a-~~~~---~~~f~~~--~--------------------------~~~l~~~~~ 224 (304)
++.++|.|+.+||.++......+ . .+.. ++.+..+ . ...+.+.|+
T Consensus 17 Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 96 (132)
T cd02964 17 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFK 96 (132)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcC
Confidence 57888889999999865544332 2 2222 2332211 1 124667799
Q ss_pred CCCCCCCCeEEEEecCC
Q 021976 225 IHPKSKRPALIFLHLEA 241 (304)
Q Consensus 225 i~~~~~~P~lv~~~~~~ 241 (304)
+.. .|+++++++++
T Consensus 97 v~~---iPt~~lid~~G 110 (132)
T cd02964 97 VEG---IPTLVVLKPDG 110 (132)
T ss_pred CCC---CCEEEEECCCC
Confidence 886 99999997664
No 347
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=82.86 E-value=4.8 Score=29.35 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeC
Q 021976 90 KLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136 (304)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 136 (304)
.+.+....+.+-..+.-.- .+..-++.+.++|+|+.+|++++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcC
Confidence 5566666555555431111 33444689999999999999999877
No 348
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=82.48 E-value=2.8 Score=30.74 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=25.9
Q ss_pred EEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccH
Q 021976 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117 (304)
Q Consensus 78 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~ 117 (304)
..|+.++|+.|++....+++ .++.+-.+|..+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA------NGIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH------cCCceEEEecCCCh
Confidence 36789999999998876665 25778888877654
No 349
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=82.38 E-value=3.2 Score=34.18 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=34.7
Q ss_pred HHHHhCCCccccEEEEEeCCeEEEEeeCCCCHHHHHHHHHHHhCCCc
Q 021976 118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGT 164 (304)
Q Consensus 118 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~ 164 (304)
..++++||+++|++++ .+| ....|..+.+.+..-|++.++...
T Consensus 175 ~~A~e~gI~gVP~fv~-d~~---~~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 175 AAAQEMGIRGVPTFVF-DGK---YAVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHHCCCccCceEEE-cCc---EeecCCCCHHHHHHHHHHHHhccc
Confidence 4688899999999988 333 566899999999999998886443
No 350
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=82.35 E-value=5.8 Score=30.45 Aligned_cols=21 Identities=14% Similarity=0.449 Sum_probs=16.8
Q ss_pred HHHhhcCCCCCCCCCeEEEEecCC
Q 021976 218 DVAEFFHIHPKSKRPALIFLHLEA 241 (304)
Q Consensus 218 ~l~~~~~i~~~~~~P~lv~~~~~~ 241 (304)
.+.++|++.+ .|+.+++.+++
T Consensus 103 ~l~~~y~v~~---iPt~vlId~~G 123 (146)
T cd03008 103 ELEAQFSVEE---LPTVVVLKPDG 123 (146)
T ss_pred HHHHHcCCCC---CCEEEEECCCC
Confidence 5778888875 99999998764
No 351
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=81.92 E-value=6.8 Score=29.35 Aligned_cols=62 Identities=13% Similarity=0.213 Sum_probs=35.3
Q ss_pred CCeEEEEEecCCCCccHHH---HHHHhccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEEecCC
Q 021976 180 ESKLVLGFLHDLEGMESEE---LAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEA 241 (304)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~---~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~P~lv~~~~~~ 241 (304)
.+..++++..+||+.+... +..+++...++.+... .++++.++|--.++...|+++++..+.
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~ 108 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDG 108 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT-
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCC
Confidence 4567777899999875444 4555555555555433 577788877655556799999997664
No 352
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=81.23 E-value=21 Score=26.96 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=51.6
Q ss_pred EEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCcc----ccEEEEEeCCeEEEEeeCCCCHHH
Q 021976 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILA----YPTLYLFVAGVRQFQFFGERTRDV 151 (304)
Q Consensus 76 ~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~----~Pt~~~~~~g~~~~~~~g~~~~~~ 151 (304)
-++.+++|.|+=|+.....++ ..++.+-.+..++-..+-+++||.. =-|.++ +| .-..|-..++.
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk------~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~G---y~vEGHVPa~a 95 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMK------ANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NG---YYVEGHVPAEA 95 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHH------hCCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cC---EEEeccCCHHH
Confidence 467799999999988765554 1267777787777777778898753 234443 66 33467788888
Q ss_pred HHHHHHHH
Q 021976 152 ISAWVREK 159 (304)
Q Consensus 152 l~~~i~~~ 159 (304)
+..++.+.
T Consensus 96 I~~ll~~~ 103 (149)
T COG3019 96 IARLLAEK 103 (149)
T ss_pred HHHHHhCC
Confidence 88887654
No 353
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=81.12 E-value=13 Score=24.61 Aligned_cols=66 Identities=15% Similarity=0.163 Sum_probs=39.9
Q ss_pred ecCCCCccHHH---HHHHh-ccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCCCceecccC-CCCHHHHHHHHh
Q 021976 188 LHDLEGMESEE---LAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRH-QFTRLAIANFVT 261 (304)
Q Consensus 188 ~~~~~~~~~~~---~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g-~~~~~~i~~fi~ 261 (304)
+.++|..+... +..++ ....++.+....+.+-.++||+.+ .|++++ + ....+.| --+.++|.+||+
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~~~~~~~~ygv~~---vPalvI-n----g~~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELGIEVEIIDIEDFEEIEKYGVMS---VPALVI-N----GKVVFVGRVPSKEELKELLE 76 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTTEEEEEEETTTHHHHHHTT-SS---SSEEEE-T----TEEEEESS--HHHHHHHHHH
T ss_pred eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccCHHHHHHcCCCC---CCEEEE-C----CEEEEEecCCCHHHHHHHhC
Confidence 56778764433 33343 333334444455555559999997 999864 2 3467888 456689998874
No 354
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=80.80 E-value=4.9 Score=26.75 Aligned_cols=71 Identities=10% Similarity=0.064 Sum_probs=40.2
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCccc----HHHHHhCCCccccEEEEEeCCeEEEEeeCCCCHHHH
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE----KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVI 152 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 152 (304)
+..++.++|+.|++.+-.+.+. ++.+-.+++... +++.+..+-..+|++..-.+|. . -.....|
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~------gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~--~----l~es~~I 69 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL------ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGV--Q----MFESADI 69 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc------CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCe--E----EEcHHHH
Confidence 3456778999999877555543 344444555432 2333333456789885322331 1 1345677
Q ss_pred HHHHHHH
Q 021976 153 SAWVREK 159 (304)
Q Consensus 153 ~~~i~~~ 159 (304)
.+|+.+.
T Consensus 70 ~~yL~~~ 76 (77)
T cd03041 70 VKYLFKT 76 (77)
T ss_pred HHHHHHh
Confidence 7777653
No 355
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=80.45 E-value=3.6 Score=32.96 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=34.1
Q ss_pred HHHHHhCCCccccEEEEEeCCeEEEEeeC--CCCHHHHHHHHHHHh
Q 021976 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFG--ERTRDVISAWVREKM 160 (304)
Q Consensus 117 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g--~~~~~~l~~~i~~~~ 160 (304)
..+++++|+.++||+.+-++|+....=.| ..+.+.+..++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 46889999999999999999965444445 356688888887765
No 356
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=79.93 E-value=2.9 Score=30.36 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=25.2
Q ss_pred EEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccH
Q 021976 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117 (304)
Q Consensus 78 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~ 117 (304)
..|+.++|+.|++....+++ .++.|-.+|..+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~ 35 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE------HGVDYTAIDIVEEP 35 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH------cCCceEEecccCCc
Confidence 46888999999998866655 15777788876543
No 357
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=78.99 E-value=7.5 Score=32.88 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=49.0
Q ss_pred CCeEEEEEecCCCCccHHH---HHHHhccCCceeEEEe-------------cCHHHHhhcCCCCCCCCCeEEEEecCCCc
Q 021976 180 ESKLVLGFLHDLEGMESEE---LAAASKLHSDVNFYQT-------------TSADVAEFFHIHPKSKRPALIFLHLEAGK 243 (304)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~---~~~~a~~~~~~~f~~~-------------~~~~l~~~~~i~~~~~~P~lv~~~~~~~~ 243 (304)
++--++.||...|.-+-+. +...+...+--.+..+ .+...++++|++. .|++++..+..++
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~---~Pal~Lv~~~t~~ 226 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKY---FPALYLVNPKSQK 226 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCcc---CceEEEEECCCCc
Confidence 3466777888888754333 3333322222222221 2456899999986 9999999988655
Q ss_pred eecc-cCCCCHHHHHHHHh
Q 021976 244 ATPF-RHQFTRLAIANFVT 261 (304)
Q Consensus 244 ~~~y-~g~~~~~~i~~fi~ 261 (304)
.... .|-.+.++|.+=|.
T Consensus 227 ~~pv~~G~iS~deL~~Ri~ 245 (256)
T TIGR02739 227 MSPLAYGFISQDELKERIL 245 (256)
T ss_pred EEEEeeccCCHHHHHHHHH
Confidence 5444 47788887765443
No 358
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=78.92 E-value=3.9 Score=30.73 Aligned_cols=35 Identities=9% Similarity=0.169 Sum_probs=24.8
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccH
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~ 117 (304)
+..|+.++|+.|++....+++- ++.+-.+|..+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccCCh
Confidence 4568889999999977555432 5667777776554
No 359
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=78.65 E-value=20 Score=32.36 Aligned_cols=90 Identities=13% Similarity=0.101 Sum_probs=60.7
Q ss_pred cCCCcEEEEEEcCCChhhhhhH--HHHHHHHHHh-hCCcEEEEEeCcc--cHHHHHhCCCccccEEEEEe-CCeEEEEee
Q 021976 71 GKNRNVMVMFYANWCYWSKKLA--PEFAAAAKML-KGEADLVMVDAYL--EKDLAKEYNILAYPTLYLFV-AGVRQFQFF 144 (304)
Q Consensus 71 ~~~~~~lv~f~a~wC~~C~~~~--~~~~~~~~~~-~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~ 144 (304)
+.++.++|-|-+......+++. -.+....... -..+.-++|+... ..++..-|-+..+|+++++. .|..+....
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevit 95 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVIT 95 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEee
Confidence 4556778878887777777776 3333333222 2244455555432 24556667888999998886 898889999
Q ss_pred CCCCHHHHHHHHHHHh
Q 021976 145 GERTRDVISAWVREKM 160 (304)
Q Consensus 145 g~~~~~~l~~~i~~~~ 160 (304)
|..++++|..-|.+..
T Consensus 96 g~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 96 GFVTADELASSIEKVW 111 (506)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999888776643
No 360
>COG1307 DegV Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.51 E-value=11 Score=32.58 Aligned_cols=158 Identities=15% Similarity=0.043 Sum_probs=89.7
Q ss_pred eCcccHHHHHhCCCccccEEEEEeCCeEEEEeeCCCCHHHHHHHHHHHhCCCceecCCHHHHH----HhhccCC-eEEEE
Q 021976 112 DAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAE----RILTVES-KLVLG 186 (304)
Q Consensus 112 d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~l~~~~~~~----~~~~~~~-~~~v~ 186 (304)
.|+-.+++.++++|...|--+.+.++ ... -....+.+++..-....-..+.+.-.+..++. .+.+... .++..
T Consensus 10 t~dl~~~~~~~~~I~vlPL~V~~~g~-~y~-D~~~l~~~~~~~~~~~~~~~p~TSqPs~~~~~~~~~~l~~~g~~~vi~i 87 (282)
T COG1307 10 TADLPPELAEKLDITVLPLSVIIDGE-SYF-DGVELSPDQFYYEMAEKGELPKTSQPSPGEFEELFEKLLQKGYDEVISI 87 (282)
T ss_pred CCCCCHHHHHhCCeEEEeEEEEECCE-Eee-ccccCCHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHhCCCcEEEEE
Confidence 35667889999999999987777554 322 12346666644444433333333333444443 3333332 45555
Q ss_pred EecCCCCccHHHHHHHhccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCCCceecccCCCCHHHHHHHHhcCCCC
Q 021976 187 FLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHP 266 (304)
Q Consensus 187 f~~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p 266 (304)
..+..-+..++.-..++++..+..+....+..+.-..+... .+- ....-+| .+.++|.+|+.+.+-.
T Consensus 88 ~iSs~LSgty~~a~~a~~~~~~~~v~viDS~~~s~~~g~~v---------~~a---~~l~~~G-~s~~ei~~~l~~~~~~ 154 (282)
T COG1307 88 HISSGLSGTYQSAQLAAELVEGAKVHVIDSKSVSMGLGFLV---------LEA---AELAKAG-KSFEEILKKLEEIREK 154 (282)
T ss_pred EcCCCccHHHHHHHHHHHhccCceEEEEcCcchhhHHHHHH---------HHH---HHHHHcC-CCHHHHHHHHHHHHhh
Confidence 56666666666633334565555555554444333333210 000 1111123 4578899999998888
Q ss_pred cEEeeCccchhhhhcCCC
Q 021976 267 LVVTLTIHNAQFVFQDPR 284 (304)
Q Consensus 267 ~~~~l~~~~~~~~~~~~~ 284 (304)
.-..+.-++...+..++.
T Consensus 155 t~~~~~v~~L~~L~kgGR 172 (282)
T COG1307 155 TKAYFVVDDLDNLVKGGR 172 (282)
T ss_pred cEEEEEECchhHHHhCCC
Confidence 888888888888777553
No 361
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=78.49 E-value=11 Score=28.29 Aligned_cols=49 Identities=8% Similarity=-0.006 Sum_probs=35.4
Q ss_pred EEEecCHHHHhhcCCCCCCCCCeEEEEecCC----------CceecccCCCCHHHHHHHHhc
Q 021976 211 FYQTTSADVAEFFHIHPKSKRPALIFLHLEA----------GKATPFRHQFTRLAIANFVTH 262 (304)
Q Consensus 211 f~~~~~~~l~~~~~i~~~~~~P~lv~~~~~~----------~~~~~y~g~~~~~~i~~fi~~ 262 (304)
....-+|.+.++|+|+. .|++|+.+.+. ..+....|..+.+.-.+.+.+
T Consensus 55 ~~v~IdP~lF~~f~I~~---VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~ 113 (130)
T TIGR02742 55 SGVQIDPQWFKQFDITA---VPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQ 113 (130)
T ss_pred CcEEEChHHHhhcCceE---cCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHH
Confidence 45567999999999997 99999988663 124455677777655555553
No 362
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=77.90 E-value=2.2 Score=30.65 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=23.9
Q ss_pred EEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCccc
Q 021976 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (304)
Q Consensus 78 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 116 (304)
..|+.++|+.|++....+++- ++.+-.+|..++
T Consensus 2 ~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccC
Confidence 468899999999987655542 566777776554
No 363
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=77.90 E-value=8.1 Score=26.10 Aligned_cols=74 Identities=7% Similarity=0.070 Sum_probs=43.7
Q ss_pred EEEEecCCCCccHHHHHHHhc--cCCceeEE---EecCHHHHhhcCCCCCCCCCeEEEEecCC-CceecccCCCCHHHHH
Q 021976 184 VLGFLHDLEGMESEELAAASK--LHSDVNFY---QTTSADVAEFFHIHPKSKRPALIFLHLEA-GKATPFRHQFTRLAIA 257 (304)
Q Consensus 184 ~v~f~~~~~~~~~~~~~~~a~--~~~~~~f~---~~~~~~l~~~~~i~~~~~~P~lv~~~~~~-~~~~~y~g~~~~~~i~ 257 (304)
++.|..+.|.-+.+.-..+.. ....+.+. ...++++.++|+.. .|.+.+=.... .......+.++.+.|.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~~~----IPVl~~~~~~~~~~~~~~~~~~d~~~L~ 77 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYGYR----IPVLHIDGIRQFKEQEELKWRFDEEQLR 77 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSCTS----TSEEEETT-GGGCTSEEEESSB-HHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhcCC----CCEEEEcCcccccccceeCCCCCHHHHH
Confidence 456777888775555444442 22333333 23788999999986 79754322111 0134455678999999
Q ss_pred HHHh
Q 021976 258 NFVT 261 (304)
Q Consensus 258 ~fi~ 261 (304)
+||+
T Consensus 78 ~~L~ 81 (81)
T PF05768_consen 78 AWLE 81 (81)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9984
No 364
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=77.85 E-value=3.6 Score=26.80 Aligned_cols=68 Identities=12% Similarity=0.059 Sum_probs=35.6
Q ss_pred EEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEEEEeeCCCCHHHHHHHHH
Q 021976 79 MFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVR 157 (304)
Q Consensus 79 ~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~ 157 (304)
.++.++|++|++.+-.+....- .+....++........+..+-..+|++.. .+|.. -.....|.+|+.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl----~~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~------l~es~aI~~yL~ 70 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNI----PVEQIILQNDDEATPIRMIGAKQVPILEK-DDGSF------MAESLDIVAFID 70 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCC----CeEEEECCCCchHHHHHhcCCCccCEEEe-CCCeE------eehHHHHHHHHh
Confidence 5778899999987765554322 22233344333333334444456888743 33422 123445666553
No 365
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=77.81 E-value=5.4 Score=25.89 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=32.5
Q ss_pred EEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcc----cHHHHHhCCCccccEEEE
Q 021976 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPTLYL 133 (304)
Q Consensus 78 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~ 133 (304)
..|+.++|+.|++.+-.+....- ......++... .+++.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l----~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI----DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC----CceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 45778899999998876655432 23344555422 234555555667899864
No 366
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=77.13 E-value=17 Score=26.99 Aligned_cols=66 Identities=15% Similarity=0.176 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhh---C-CcEEEEEeCcccHH----------HHHhCCCccccEEEEEeCCeEEEEeeCCCCHHHHHHHHH
Q 021976 92 APEFAAAAKMLK---G-EADLVMVDAYLEKD----------LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVR 157 (304)
Q Consensus 92 ~~~~~~~~~~~~---~-~~~~~~vd~~~~~~----------~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~ 157 (304)
.|++.+++..++ + ++.+.+.|..+++. +.++-|....|-+++ +| .+...-.+.+.++|.+|+.
T Consensus 23 d~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dG-eiv~~G~YPt~eEl~~~~~ 99 (123)
T PF06953_consen 23 DPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DG-EIVKTGRYPTNEELAEWLG 99 (123)
T ss_dssp -HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TT-EEEEESS---HHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CC-EEEEecCCCCHHHHHHHhC
Confidence 445555444433 2 89999999987753 445568899998876 89 5555556688899999986
Q ss_pred HHh
Q 021976 158 EKM 160 (304)
Q Consensus 158 ~~~ 160 (304)
-..
T Consensus 100 i~~ 102 (123)
T PF06953_consen 100 ISF 102 (123)
T ss_dssp --G
T ss_pred CCc
Confidence 443
No 367
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=77.04 E-value=21 Score=28.56 Aligned_cols=47 Identities=9% Similarity=0.084 Sum_probs=34.8
Q ss_pred EEEecCHHHHhhcCCCCCCCCCeE-EEEecCCCceecccCCCCHHHHHHHH
Q 021976 211 FYQTTSADVAEFFHIHPKSKRPAL-IFLHLEAGKATPFRHQFTRLAIANFV 260 (304)
Q Consensus 211 f~~~~~~~l~~~~~i~~~~~~P~l-v~~~~~~~~~~~y~g~~~~~~i~~fi 260 (304)
+....+..+...|++.+ .|+. +++.+.+.....+.|..+.+++.+.+
T Consensus 129 vllD~~g~v~~~~gv~~---~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 129 VVLDDKGAVKNAWQLNS---EDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred EEECCcchHHHhcCCCC---CCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 33445556788999986 8777 68888877788888998888776643
No 368
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=76.68 E-value=14 Score=24.89 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=37.6
Q ss_pred HHHHHhhccCCeEEEEEecCCCCccHHHHHHH------hc-cCCceeEEEe--cCHHHHhhcCCCCCCCCCeEEEEec
Q 021976 171 DEAERILTVESKLVLGFLHDLEGMESEELAAA------SK-LHSDVNFYQT--TSADVAEFFHIHPKSKRPALIFLHL 239 (304)
Q Consensus 171 ~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~------a~-~~~~~~f~~~--~~~~l~~~~~i~~~~~~P~lv~~~~ 239 (304)
+.+....+++++++|.|..+||..+...-... .. +..++....+ ++.+-...+...+ +|+++++.+
T Consensus 8 ~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~~~---~P~~~~ldp 82 (82)
T PF13899_consen 8 EALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDRQG---YPTFFFLDP 82 (82)
T ss_dssp HHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHHCS---SSEEEEEET
T ss_pred HHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCCcc---CCEEEEeCC
Confidence 34566777899999999999998754332221 11 3344444433 2222111222243 899998863
No 369
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=76.33 E-value=1.9 Score=29.50 Aligned_cols=51 Identities=25% Similarity=0.292 Sum_probs=41.2
Q ss_pred cCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcccHHHHHhCCCccccEEE
Q 021976 82 ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLY 132 (304)
Q Consensus 82 a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 132 (304)
+..-+.++.....+..+.+.+-+ ...+-.||..+++++++.++|-.+||++
T Consensus 5 ~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 5 AGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp SSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 34445567777788888777544 8899999999999999999999999874
No 370
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=76.06 E-value=23 Score=30.68 Aligned_cols=110 Identities=17% Similarity=0.276 Sum_probs=66.3
Q ss_pred HHHHHHHHh----CCCceecCCHHHHHHhhcc--CCeEEEEEecCCC--------CccHHHHHHHh-ccCC--------c
Q 021976 152 ISAWVREKM----TLGTYSITTTDEAERILTV--ESKLVLGFLHDLE--------GMESEELAAAS-KLHS--------D 208 (304)
Q Consensus 152 l~~~i~~~~----~~~~~~l~~~~~~~~~~~~--~~~~~v~f~~~~~--------~~~~~~~~~~a-~~~~--------~ 208 (304)
+.+-+.+.+ +..+..+ +.+.+..++.. .+..++.+++... -+..++|..+| ..+. +
T Consensus 26 ls~kv~~L~~~ts~~~VI~~-n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tk 104 (331)
T KOG2603|consen 26 LSNKVVQLMSWTSESGVIRM-NDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTK 104 (331)
T ss_pred HHHHHHHHHhccCCCCeEEe-cCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcce
Confidence 455554444 3566666 44677888764 3445555555322 23556666655 2222 2
Q ss_pred eeEE---EecCHHHHhhcCCCCCCCCCeEEEEecCCC---ceecccC---CCCHHHHHHHHhcCCC
Q 021976 209 VNFY---QTTSADVAEFFHIHPKSKRPALIFLHLEAG---KATPFRH---QFTRLAIANFVTHTKH 265 (304)
Q Consensus 209 ~~f~---~~~~~~l~~~~~i~~~~~~P~lv~~~~~~~---~~~~y~g---~~~~~~i~~fi~~~~~ 265 (304)
+-|. ..+.+++.+.+++.+ .|.++.|.+..+ +...+++ ....|.+.+|+.+...
T Consensus 105 lFF~~Vd~~e~p~~Fq~l~ln~---~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 105 LFFCMVDYDESPQVFQQLNLNN---VPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK 167 (331)
T ss_pred EEEEEEeccccHHHHHHhcccC---CCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence 2233 347889999999997 999999965532 2222322 2358999999997543
No 371
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=75.50 E-value=19 Score=30.15 Aligned_cols=32 Identities=3% Similarity=0.028 Sum_probs=24.6
Q ss_pred CCeEEEEecCCCceecccCCCCHHHHHHHHhc
Q 021976 231 RPALIFLHLEAGKATPFRHQFTRLAIANFVTH 262 (304)
Q Consensus 231 ~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi~~ 262 (304)
.|+.+++.+++.....|.|..+.++|.+.|++
T Consensus 201 ~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~ 232 (236)
T PLN02399 201 NFEKFLVDKNGKVVERYPPTTSPFQIEKDIQK 232 (236)
T ss_pred CceEEEECCCCcEEEEECCCCCHHHHHHHHHH
Confidence 36777777777777888888888888888764
No 372
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=74.88 E-value=45 Score=28.18 Aligned_cols=105 Identities=15% Similarity=0.284 Sum_probs=62.9
Q ss_pred CcEEcChhcHHHHhcCCCcEEEEEEcCCCh-hhhhhHHHHHHHHHHhhC--Cc----EEEEEeCccc-------------
Q 021976 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCY-WSKKLAPEFAAAAKMLKG--EA----DLVMVDAYLE------------- 116 (304)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~-~C~~~~~~~~~~~~~~~~--~~----~~~~vd~~~~------------- 116 (304)
.+++.+++.+.+.--.++-+|++|-=+.|| -|-.+...+.++..+.+. ++ .|+.+|=+.+
T Consensus 123 ~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~ 202 (280)
T KOG2792|consen 123 SLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFH 202 (280)
T ss_pred EEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcC
Confidence 344444444433323678899999999996 476666655555555544 22 4666664221
Q ss_pred -------------HHHHHhCCCcccc-------------EEEEE--e-CCeEEEEeeC-CCCHHHHHHHHHHHhCC
Q 021976 117 -------------KDLAKEYNILAYP-------------TLYLF--V-AGVRQFQFFG-ERTRDVISAWVREKMTL 162 (304)
Q Consensus 117 -------------~~~~~~~~v~~~P-------------t~~~~--~-~g~~~~~~~g-~~~~~~l~~~i~~~~~~ 162 (304)
.++|++|.|..-+ ++++| + +| ....|-| .++++++.+-|.+++.+
T Consensus 203 pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg-~Fvd~~GrN~~~~~~~~~I~~~v~~ 277 (280)
T KOG2792|consen 203 PKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEG-EFVDYYGRNYDADELADSILKHVAS 277 (280)
T ss_pred hhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCc-ceehhhcccCCHHHHHHHHHHHHHh
Confidence 3578888765332 34343 3 66 4445555 68899999888877643
No 373
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=73.94 E-value=2.3 Score=36.58 Aligned_cols=155 Identities=14% Similarity=0.103 Sum_probs=82.1
Q ss_pred cccHHHHHhCCCccccEEEEEeCCeEEEEe-eC-CCCHHHHHHHHHHHhCCCceecCCHHHHHHhhc-----cCCeEEEE
Q 021976 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQF-FG-ERTRDVISAWVREKMTLGTYSITTTDEAERILT-----VESKLVLG 186 (304)
Q Consensus 114 ~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~-~g-~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~v~ 186 (304)
+-.++..+++||.-+|-.+.+.+. .| +| ..+.+++.+.+.+.-..+.+.-.+..++.+..+ ..+.++..
T Consensus 11 dl~~~~~~~~~i~vvPl~i~~~~~----~y~D~~~i~~~efy~~l~~~~~~p~TS~ps~~~~~~~f~~~~~~gyd~ii~i 86 (280)
T PF02645_consen 11 DLPPELAEEYGIYVVPLNIIIDGK----EYRDGVDISPEEFYEKLRESGEIPKTSQPSPGEFEEAFEKLLEEGYDEIIVI 86 (280)
T ss_dssp ---HHHHHHTTEEEE--EEEETTE----EEETTTTSCHHHHHHHHHHTTSEEEEE---HHHHHHHHHHHHHTTTSEEEEE
T ss_pred CCCHHHHHhCCeEEEeEEEecCCe----EEecCCCCCHHHHHHHHHhcCCCceecCCCHHHHHHHHHHHHHCCCCeEEEE
Confidence 345688999999999988777542 23 34 688999999996655444344445555544443 23445555
Q ss_pred EecCCCCccHHHHHHHhccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCCCceecccCCCCHHHHHHHHhcCCCC
Q 021976 187 FLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHP 266 (304)
Q Consensus 187 f~~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p 266 (304)
-.+..-+..++....+++.....++....+..+.-..+.- +.+- ....-+| .+.++|.+++++.+..
T Consensus 87 ~iSs~LSgty~~a~~aa~~~~~~~i~ViDS~~~s~g~g~l---------v~~a---~~l~~~G-~s~~ei~~~l~~~~~~ 153 (280)
T PF02645_consen 87 TISSGLSGTYNSARLAAKMLPDIKIHVIDSKSVSAGQGLL---------VLEA---AKLIEQG-KSFEEIVEKLEELRER 153 (280)
T ss_dssp ES-TTT-THHHHHHHHHHHHTTTEEEEEE-SS-HHHHHHH---------HHHH---HHHHHTT---HHHHHHHHHHHHHT
T ss_pred eCCcchhhHHHHHHHHHhhcCcCEEEEEeCCCcchhhhHH---------HHHH---HHHHHcC-CCHHHHHHHHHHHHhh
Confidence 5666666667666666632233333333222222111110 0000 0111123 4888999999988877
Q ss_pred cEEeeCccchhhhhcCCCC
Q 021976 267 LVVTLTIHNAQFVFQDPRK 285 (304)
Q Consensus 267 ~~~~l~~~~~~~~~~~~~~ 285 (304)
....+..+++..+..++.-
T Consensus 154 ~~~~f~~~~L~~L~kgGRi 172 (280)
T PF02645_consen 154 TRTYFVVDDLKYLRKGGRI 172 (280)
T ss_dssp EEEEEEES-SHHHHHCTSS
T ss_pred ceEEEEechHHHHHHCCCc
Confidence 7888888888887776543
No 374
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=73.76 E-value=5.2 Score=25.18 Aligned_cols=52 Identities=15% Similarity=0.061 Sum_probs=31.7
Q ss_pred EEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccH--HHHHhCCCccccEEEE
Q 021976 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK--DLAKEYNILAYPTLYL 133 (304)
Q Consensus 78 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~ 133 (304)
..|+.++|+.|++..-.++...- .+....++..... ++-+..+-..+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL----PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC----CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 35778899999987766655422 3344445543322 2444566778898754
No 375
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=73.18 E-value=10 Score=27.42 Aligned_cols=44 Identities=11% Similarity=0.165 Sum_probs=37.4
Q ss_pred cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcc
Q 021976 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL 115 (304)
Q Consensus 71 ~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~ 115 (304)
-+++++||-=-|+-|+.-. -...++++.++|+. ++.++..=|.+
T Consensus 19 y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 19 YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 3688998888999999888 66799999999986 88888888854
No 376
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=72.85 E-value=39 Score=25.59 Aligned_cols=89 Identities=10% Similarity=0.040 Sum_probs=60.4
Q ss_pred cCCCcEEEEEEcCCC----hhhhhhHHHHHHHHHHhhCCcEEEEEeCcccH------------------HHHHhCCCccc
Q 021976 71 GKNRNVMVMFYANWC----YWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK------------------DLAKEYNILAY 128 (304)
Q Consensus 71 ~~~~~~lv~f~a~wC----~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~------------------~~~~~~~v~~~ 128 (304)
++.|+.+|+.+++-- ..|++..- =+.+.+-.+.++.+..-|++... ...+.++...+
T Consensus 19 ~e~K~L~VYLH~~~~~~t~~Fc~~~L~-se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~f 97 (136)
T cd02990 19 RDRKLLAIYLHHDESVLSNVFCSQLLC-AESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQL 97 (136)
T ss_pred hhcceEEEEEcCCCCccHHHHHHHHhc-CHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCC
Confidence 456899999998865 34444321 03333334457888888876542 24566789999
Q ss_pred cEEEEEe--CC--eEEEEeeCCCCHHHHHHHHHHHh
Q 021976 129 PTLYLFV--AG--VRQFQFFGERTRDVISAWVREKM 160 (304)
Q Consensus 129 Pt~~~~~--~g--~~~~~~~g~~~~~~l~~~i~~~~ 160 (304)
|.+.+.- .+ ..+.+..|..+.+++..-+....
T Consensus 98 P~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 98 PAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred CeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 9988875 22 46678899999999998887654
No 377
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=72.37 E-value=13 Score=31.25 Aligned_cols=78 Identities=13% Similarity=0.117 Sum_probs=47.9
Q ss_pred CeEEEEEecCCCCccH---HHHHHHhccCCceeEEEe-------------cCHHHHhhcCCCCCCCCCeEEEEecCCCce
Q 021976 181 SKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQT-------------TSADVAEFFHIHPKSKRPALIFLHLEAGKA 244 (304)
Q Consensus 181 ~~~~v~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~-------------~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~ 244 (304)
+--++.||...|.-+- ..+...+...+--.+..+ .+...+++++++. .|++++..+..++.
T Consensus 144 ~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~---~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 144 HYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKY---FPALMLVDPKSGSV 220 (248)
T ss_pred cceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcc---cceEEEEECCCCcE
Confidence 3567778888776543 334444432222222221 2445778999986 99999999886555
Q ss_pred ecc-cCCCCHHHHHHHHh
Q 021976 245 TPF-RHQFTRLAIANFVT 261 (304)
Q Consensus 245 ~~y-~g~~~~~~i~~fi~ 261 (304)
... .|-.+.++|.+=|.
T Consensus 221 ~pv~~G~iS~deL~~Ri~ 238 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFL 238 (248)
T ss_pred EEEeeccCCHHHHHHHHH
Confidence 444 47778887765443
No 378
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=72.13 E-value=5.1 Score=35.30 Aligned_cols=75 Identities=11% Similarity=0.097 Sum_probs=48.3
Q ss_pred ChhhhhhHHHHHHHHHHhhC-------CcEEEEEeCcccHH--H-HHhCCCc-ccc-EEEEEeCCeEEEEe-eCCCCHHH
Q 021976 85 CYWSKKLAPEFAAAAKMLKG-------EADLVMVDAYLEKD--L-AKEYNIL-AYP-TLYLFVAGVRQFQF-FGERTRDV 151 (304)
Q Consensus 85 C~~C~~~~~~~~~~~~~~~~-------~~~~~~vd~~~~~~--~-~~~~~v~-~~P-t~~~~~~g~~~~~~-~g~~~~~~ 151 (304)
||.|-+..=.+++++++.+. .+.++..-|--|.. . -.++|+. +-| ...+|++|+.+.+. ....-.+.
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd~ 350 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVDE 350 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHHH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHHH
Confidence 88887766566666655443 78999999987632 1 2357776 444 68899999999988 77777788
Q ss_pred HHHHHHHH
Q 021976 152 ISAWVREK 159 (304)
Q Consensus 152 l~~~i~~~ 159 (304)
|.+.|+++
T Consensus 351 L~~~I~~~ 358 (359)
T PF04551_consen 351 LIELIEEH 358 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 88887765
No 379
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=71.91 E-value=40 Score=27.27 Aligned_cols=100 Identities=15% Similarity=0.184 Sum_probs=65.0
Q ss_pred CCceecCCHHHHHHhhcc-CCeEEEEEecCCCC----ccHHHHHHHhccCCceeEEEecCHHHHhhcCCCCCCCCCeEEE
Q 021976 162 LGTYSITTTDEAERILTV-ESKLVLGFLHDLEG----MESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIF 236 (304)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~-~~~~~v~f~~~~~~----~~~~~~~~~a~~~~~~~f~~~~~~~l~~~~~i~~~~~~P~lv~ 236 (304)
..+..|+..+-..+.... ...|+|+-...... -....+..+|.....++|..+....-..-|--. ..||+++
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cIpNYPe~---nlPTl~V 167 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCIPNYPES---NLPTLLV 167 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccccCCCccc---CCCeEEE
Confidence 567778777777777654 45666664333233 355566677777788899877665555556544 4999999
Q ss_pred EecCCCce-----ecccC-CCCHHHHHHHHhcCC
Q 021976 237 LHLEAGKA-----TPFRH-QFTRLAIANFVTHTK 264 (304)
Q Consensus 237 ~~~~~~~~-----~~y~g-~~~~~~i~~fi~~~~ 264 (304)
|..++-+. ..+-| ..+.+++..++-+..
T Consensus 168 Y~~G~lk~q~igll~lgG~n~t~ed~e~~L~qag 201 (240)
T KOG3170|consen 168 YHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAG 201 (240)
T ss_pred eecchHHhheehhhhhcCCcCCHHHHHHHHHhcc
Confidence 99886221 23334 347788888887654
No 380
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=71.23 E-value=7.8 Score=32.03 Aligned_cols=44 Identities=14% Similarity=0.261 Sum_probs=36.8
Q ss_pred cCCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC----CcEEEEEeCc
Q 021976 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG----EADLVMVDAY 114 (304)
Q Consensus 71 ~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~----~~~~~~vd~~ 114 (304)
..+.+++|-+-..+|..|..-+..++.+..++.. +|.|..||-.
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 3578999999999999999999999999888765 6778877743
No 381
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=69.71 E-value=12 Score=27.32 Aligned_cols=34 Identities=6% Similarity=0.130 Sum_probs=24.4
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCccc
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 116 (304)
+..|+.++|+.|++....+++. ++.+-.+|..++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCceEEEecCCC
Confidence 3467889999999987666552 566777776554
No 382
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=69.53 E-value=9.4 Score=33.31 Aligned_cols=76 Identities=11% Similarity=0.080 Sum_probs=52.8
Q ss_pred ChhhhhhHHHHHHHHH----HhhC---CcEEEEEeCcccH---HHHHhCCCcc--ccEEEEEeCCeEEEEeeCCCCHHHH
Q 021976 85 CYWSKKLAPEFAAAAK----MLKG---EADLVMVDAYLEK---DLAKEYNILA--YPTLYLFVAGVRQFQFFGERTRDVI 152 (304)
Q Consensus 85 C~~C~~~~~~~~~~~~----~~~~---~~~~~~vd~~~~~---~~~~~~~v~~--~Pt~~~~~~g~~~~~~~g~~~~~~l 152 (304)
||.|-+..-.+.+..+ .+.. .+.++.+-|--|. ..-.++|+.+ -|...+|.+|+.+.+..+..-.+++
T Consensus 264 CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~eel 343 (361)
T COG0821 264 CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEEL 343 (361)
T ss_pred CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHHH
Confidence 8888775544443333 3333 5778888886552 2234567765 5899999999989998888888888
Q ss_pred HHHHHHHh
Q 021976 153 SAWVREKM 160 (304)
Q Consensus 153 ~~~i~~~~ 160 (304)
...+.++.
T Consensus 344 ~~~i~~~~ 351 (361)
T COG0821 344 EALIEAYA 351 (361)
T ss_pred HHHHHHHH
Confidence 88877665
No 383
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=69.32 E-value=6.6 Score=31.54 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=28.3
Q ss_pred cHHHHHhCCCccccEEEEEeCCeEEEEeeCCCCHHHHHHHH
Q 021976 116 EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156 (304)
Q Consensus 116 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (304)
+.+.+.+.||.++||+++ +|+ ....|..+.+.+.+-|
T Consensus 164 ~~~~a~~~gv~G~Pt~vv--~g~--~~~~G~~~~~~~~~~i 200 (201)
T cd03024 164 DEARARQLGISGVPFFVF--NGK--YAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHHCCCCcCCEEEE--CCe--EeecCCCCHHHHHHHh
Confidence 345678899999999988 663 2367999988887654
No 384
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=69.02 E-value=11 Score=24.50 Aligned_cols=51 Identities=18% Similarity=0.094 Sum_probs=31.9
Q ss_pred EEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcc----cHHHHHhCCCccccEEE
Q 021976 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPTLY 132 (304)
Q Consensus 78 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~ 132 (304)
..|+.++|+.|++.+-.+++..- .+....+|..+ .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi----~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL----ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC----CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 46788999999987665555432 33445555432 24555555566789995
No 385
>PTZ00056 glutathione peroxidase; Provisional
Probab=68.75 E-value=33 Score=27.80 Aligned_cols=29 Identities=7% Similarity=0.132 Sum_probs=19.3
Q ss_pred eEEEEecCCCceecccCCCCHHHHHHHHh
Q 021976 233 ALIFLHLEAGKATPFRHQFTRLAIANFVT 261 (304)
Q Consensus 233 ~lv~~~~~~~~~~~y~g~~~~~~i~~fi~ 261 (304)
+.+++.+.+.....+.|..+.+.+...|.
T Consensus 147 ~tflID~~G~iv~~~~g~~~~~~l~~~I~ 175 (199)
T PTZ00056 147 GKFLVNKSGNVVAYFSPRTEPLELEKKIA 175 (199)
T ss_pred EEEEECCCCcEEEEeCCCCCHHHHHHHHH
Confidence 44556655555666777777777777776
No 386
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=68.72 E-value=73 Score=27.07 Aligned_cols=75 Identities=16% Similarity=0.123 Sum_probs=43.5
Q ss_pred CCCcEEcChhcHHHHhcCCCcEEEEEEcCCC-hh-hhhhHHHHHHHHHHh----hCCcEEEEEeCcccHHHHHh----CC
Q 021976 55 AKDVVSLNGKNFSEFMGKNRNVMVMFYANWC-YW-SKKLAPEFAAAAKML----KGEADLVMVDAYLEKDLAKE----YN 124 (304)
Q Consensus 55 ~~~v~~l~~~~~~~~~~~~~~~lv~f~a~wC-~~-C~~~~~~~~~~~~~~----~~~~~~~~vd~~~~~~~~~~----~~ 124 (304)
.+....|++.+-+-+-+=++++-|.+|.+-- +. -....+.+.++-++| ++++.+-.||-+.+++..++ +|
T Consensus 6 ~~k~ysLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~G 85 (271)
T PF09822_consen 6 ANKRYSLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYG 85 (271)
T ss_pred CCCCccCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcC
Confidence 3566677776655433334566666665541 11 233444444444444 33799999998777666555 88
Q ss_pred Ccccc
Q 021976 125 ILAYP 129 (304)
Q Consensus 125 v~~~P 129 (304)
|...+
T Consensus 86 i~~~~ 90 (271)
T PF09822_consen 86 IQPVQ 90 (271)
T ss_pred CCccc
Confidence 87733
No 387
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=68.69 E-value=12 Score=24.83 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=36.3
Q ss_pred EEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccH----------------HHHHhCCCccccEEEEEeCCeEE
Q 021976 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK----------------DLAKEYNILAYPTLYLFVAGVRQ 140 (304)
Q Consensus 78 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----------------~~~~~~~v~~~Pt~~~~~~g~~~ 140 (304)
+.|++.-||.|..+..+++++. +.+-.|++.... +-.+..|--|+|.+.+ .+|+.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~------v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vV 76 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN------VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVV 76 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC------CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEE
Confidence 6799999999988776666653 444455554332 2245567778999855 455443
No 388
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=68.33 E-value=42 Score=24.19 Aligned_cols=87 Identities=11% Similarity=0.090 Sum_probs=64.8
Q ss_pred CCcEEEEEEcCCChhhhhhHHHHHHHHHHhhC--CcEEEEEeCcccHHHH----HhCCCc-cccEEEEEe--CCe-EEEE
Q 021976 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLA----KEYNIL-AYPTLYLFV--AGV-RQFQ 142 (304)
Q Consensus 73 ~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~----~~~~v~-~~Pt~~~~~--~g~-~~~~ 142 (304)
+...+|-|--.--+.-.++.+.+.++|+.+.. ++.++=||=++-+-+. +-|+|. .-|.+-+.+ +.. .-.+
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~~ 99 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWME 99 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeEe
Confidence 45678888888889999999999999999876 8999999988876543 345654 359988886 222 3344
Q ss_pred eeCC---CCHHHHHHHHHHH
Q 021976 143 FFGE---RTRDVISAWVREK 159 (304)
Q Consensus 143 ~~g~---~~~~~l~~~i~~~ 159 (304)
..+. .++++|..||...
T Consensus 100 m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 100 MDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred cccccccCcHHHHHHHHHhh
Confidence 4443 6789999999764
No 389
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=68.17 E-value=48 Score=24.82 Aligned_cols=45 Identities=4% Similarity=0.020 Sum_probs=31.6
Q ss_pred cCCceeEEEecCHHHHhhcCCC---------CCCCCCeEEEEecCCCceecccCCCC
Q 021976 205 LHSDVNFYQTTSADVAEFFHIH---------PKSKRPALIFLHLEAGKATPFRHQFT 252 (304)
Q Consensus 205 ~~~~~~f~~~~~~~l~~~~~i~---------~~~~~P~lv~~~~~~~~~~~y~g~~~ 252 (304)
....+.+....+..+.+.|++. . .|+.+++..++.......|..+
T Consensus 83 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~---~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 83 YGINFPVLSDPDGALAKALGVTIMEDPGNGFG---IPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp TTTTSEEEEETTSHHHHHTTCEEECCTTTTSS---SSEEEEEETTSBEEEEEESSBT
T ss_pred hCCCceEEechHHHHHHHhCCccccccccCCe---ecEEEEEECCCEEEEEEeCCCC
Confidence 3345555555777899999977 5 9999999888755555555543
No 390
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=67.64 E-value=8.1 Score=25.06 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=39.4
Q ss_pred EEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCccc-HHHHHhCCCccccEEEEEeCCeEEEEeeCCCCHHHHHHHH
Q 021976 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156 (304)
Q Consensus 78 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (304)
..|+.++|+.|++..-.++...- ......+|.... +++.+......+|++. .+|.. -.....|.+|+
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi----~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~------l~es~aI~~yL 69 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV----SVEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLV------LYESRIIMEYL 69 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC----ccEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEE------EEcHHHHHHHH
Confidence 46788999999998765544332 233444554433 3444444566789774 34421 13445677776
Q ss_pred HH
Q 021976 157 RE 158 (304)
Q Consensus 157 ~~ 158 (304)
.+
T Consensus 70 ~~ 71 (73)
T cd03059 70 DE 71 (73)
T ss_pred Hh
Confidence 54
No 391
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=67.54 E-value=10 Score=33.46 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=46.7
Q ss_pred ChhhhhhHHHHH----HHHHHhhC---CcEEEEEeCccc---HHHHHhCCCcccc-EEEEEeCCeEEEEeeCCCCHHHHH
Q 021976 85 CYWSKKLAPEFA----AAAKMLKG---EADLVMVDAYLE---KDLAKEYNILAYP-TLYLFVAGVRQFQFFGERTRDVIS 153 (304)
Q Consensus 85 C~~C~~~~~~~~----~~~~~~~~---~~~~~~vd~~~~---~~~~~~~~v~~~P-t~~~~~~g~~~~~~~g~~~~~~l~ 153 (304)
||.|..-.-... ++.+.+.+ .+.++..-|--| ..-..++||.+-+ ...+|.+|+.+.+..+..-.+.+.
T Consensus 271 CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~ 350 (360)
T PRK00366 271 CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELE 350 (360)
T ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHHH
Confidence 777766544443 44444444 578888888532 2334577887654 678888998888877665555555
Q ss_pred HHHHHH
Q 021976 154 AWVREK 159 (304)
Q Consensus 154 ~~i~~~ 159 (304)
+-+.+.
T Consensus 351 ~~i~~~ 356 (360)
T PRK00366 351 AEIEAY 356 (360)
T ss_pred HHHHHH
Confidence 555443
No 392
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=66.93 E-value=31 Score=28.21 Aligned_cols=101 Identities=13% Similarity=0.142 Sum_probs=63.1
Q ss_pred CceecCCHHHHHHhhccC-C--eEEEEEecCCC---CccHHHHHHHhccCCceeEEEe--cCHHHHhhcCCCCCCCCCeE
Q 021976 163 GTYSITTTDEAERILTVE-S--KLVLGFLHDLE---GMESEELAAASKLHSDVNFYQT--TSADVAEFFHIHPKSKRPAL 234 (304)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~-~--~~~v~f~~~~~---~~~~~~~~~~a~~~~~~~f~~~--~~~~l~~~~~i~~~~~~P~l 234 (304)
.+.++++-.++-..++.. . ..+|..|.+.- ......+.-+|.-...++|-.+ ++...-++|.... +|++
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~gas~~F~~n~---lP~L 215 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTGASDRFSLNV---LPTL 215 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccccchhhhcccC---CceE
Confidence 467777777776666543 2 33444565532 2233334445544466777654 5667788898886 9999
Q ss_pred EEEecCCC--cee----cccCCCCHHHHHHHHhcCCCC
Q 021976 235 IFLHLEAG--KAT----PFRHQFTRLAIANFVTHTKHP 266 (304)
Q Consensus 235 v~~~~~~~--~~~----~y~g~~~~~~i~~fi~~~~~p 266 (304)
.+|+.++- .++ .+-.++...++..|++...+-
T Consensus 216 liYkgGeLIgNFv~va~qlgedffa~dle~FL~e~gll 253 (273)
T KOG3171|consen 216 LIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYGLL 253 (273)
T ss_pred EEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCCC
Confidence 99998751 122 222356778999999986543
No 393
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=65.06 E-value=14 Score=29.87 Aligned_cols=43 Identities=19% Similarity=0.197 Sum_probs=32.7
Q ss_pred ccHHHHHhCCCccccEEEEEeCCeEEEEeeCCCCHHHHHHHHHH
Q 021976 115 LEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158 (304)
Q Consensus 115 ~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 158 (304)
-++.+.++|+|+.+|++++...+ ......|..+...-.+.+.+
T Consensus 150 IDP~lF~~F~I~~VPafVv~C~~-~yD~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 150 IDPTLFSQYGIRSVPALVVFCSQ-GYDIIRGNLRVGQALEKVAA 192 (212)
T ss_pred ECHHHHHhcCCccccEEEEEcCC-CCCEEEecccHHHHHHHHHh
Confidence 36889999999999999997543 45566788887666665554
No 394
>PRK12559 transcriptional regulator Spx; Provisional
Probab=63.92 E-value=8.6 Score=28.88 Aligned_cols=34 Identities=12% Similarity=0.170 Sum_probs=23.4
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCccc
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 116 (304)
+..|+.++|+.|++....+++- ++.+-.+|..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN------QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCeEEEEeeCC
Confidence 4578889999999976554432 566666666544
No 395
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=63.40 E-value=12 Score=29.74 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=26.2
Q ss_pred HHHHHhCCCccccEEEEEeCCeEEEEeeCCCCHHHHHHHH
Q 021976 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156 (304)
Q Consensus 117 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (304)
...+.++||.++||+++ +|+ .+.|....+.+...+
T Consensus 157 ~~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 157 TEEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHHh
Confidence 45678899999999988 673 556877777766654
No 396
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=63.18 E-value=46 Score=26.70 Aligned_cols=37 Identities=5% Similarity=0.100 Sum_probs=20.7
Q ss_pred CHHHHhhcCCCCCCCCCeEEEEecCCCceecccCCCCHHHHHHHH
Q 021976 216 SADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFV 260 (304)
Q Consensus 216 ~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi 260 (304)
+.++++.+|+.+ -|+++ ++++. .+.|..+.+.|.+|+
T Consensus 161 ~~~l~~~~gi~g---tPtii-~~~G~----~~~G~~~~~~l~~~L 197 (197)
T cd03020 161 NLALGRQLGVNG---TPTIV-LADGR----VVPGAPPAAQLEALL 197 (197)
T ss_pred HHHHHHHcCCCc---ccEEE-ECCCe----EecCCCCHHHHHhhC
Confidence 335666666665 67765 44332 245655666666553
No 397
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=62.99 E-value=55 Score=23.79 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=22.5
Q ss_pred EEEecCHHHHhhcCCCCCCCCCeEEEEec
Q 021976 211 FYQTTSADVAEFFHIHPKSKRPALIFLHL 239 (304)
Q Consensus 211 f~~~~~~~l~~~~~i~~~~~~P~lv~~~~ 239 (304)
....-+|.+.++|+|+. .|++|+-+.
T Consensus 55 ~~v~IdP~~F~~y~I~~---VPa~V~~~~ 80 (113)
T PF09673_consen 55 PGVQIDPRLFRQYNITA---VPAFVVVKD 80 (113)
T ss_pred cceeEChhHHhhCCceE---cCEEEEEcC
Confidence 44567999999999997 999998877
No 398
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=61.03 E-value=22 Score=24.38 Aligned_cols=53 Identities=9% Similarity=0.187 Sum_probs=32.7
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCccc-HHHHHhCCCccccEEEE
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-KDLAKEYNILAYPTLYL 133 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~~ 133 (304)
+..|+.+.|+.|++..-.+....- .+....++.... +.+.+......+|.+..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl----~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI----PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC----CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 555678889999987655544322 344555655433 33555555678899864
No 399
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=60.46 E-value=13 Score=29.53 Aligned_cols=28 Identities=18% Similarity=0.430 Sum_probs=25.1
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhC
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKG 104 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~ 104 (304)
+..|+.+.|+.|-...+.+.++.++++.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~ 30 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGG 30 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCC
Confidence 6688899999999999999999999843
No 400
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=60.35 E-value=8.3 Score=27.15 Aligned_cols=9 Identities=44% Similarity=0.515 Sum_probs=4.3
Q ss_pred CcchhhHHH
Q 021976 1 MEKTKTLLL 9 (304)
Q Consensus 1 M~~~~~~~~ 9 (304)
|..|.++++
T Consensus 1 MaSK~~llL 9 (95)
T PF07172_consen 1 MASKAFLLL 9 (95)
T ss_pred CchhHHHHH
Confidence 764444333
No 401
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=59.48 E-value=14 Score=26.63 Aligned_cols=63 Identities=16% Similarity=0.228 Sum_probs=38.3
Q ss_pred EEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCcc--ccEEEE-EeCCeEEEEeeCC
Q 021976 80 FYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILA--YPTLYL-FVAGVRQFQFFGE 146 (304)
Q Consensus 80 f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~Pt~~~-~~~g~~~~~~~g~ 146 (304)
||..+|+-|......+.+... .+.+.+..+.-....++.+.++++. .-+.+. ..+|+ ..|.|.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~--~~~~G~ 67 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR--GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE--RVYRGS 67 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC--CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC--EEEEcH
Confidence 789999999998887777622 1255555554344455567777752 344444 35774 344454
No 402
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=59.11 E-value=49 Score=25.92 Aligned_cols=86 Identities=10% Similarity=0.064 Sum_probs=48.4
Q ss_pred HHHHHHHhCCCceec-CCHHHHHHhhccCCeEEEEEecCCCCccHHHHH----H--Hh----ccCCceeEEEecCHHHHh
Q 021976 153 SAWVREKMTLGTYSI-TTTDEAERILTVESKLVLGFLHDLEGMESEELA----A--AS----KLHSDVNFYQTTSADVAE 221 (304)
Q Consensus 153 ~~~i~~~~~~~~~~l-~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~----~--~a----~~~~~~~f~~~~~~~l~~ 221 (304)
.-+++++...++.=. -+.+.++...+++++++|.++.++|.-+-..-. . ++ +.--.+++..-..+++.+
T Consensus 9 Spyl~~ha~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~ 88 (163)
T PF03190_consen 9 SPYLRQHAHNPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDK 88 (163)
T ss_dssp -HHHHTTTTSSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHH
T ss_pred CHHHHHhccCCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHH
Confidence 357777777776433 345778888888999999999999975322211 1 11 122233444457788888
Q ss_pred hc--------CCCCCCCCCeEEEEecCC
Q 021976 222 FF--------HIHPKSKRPALIFLHLEA 241 (304)
Q Consensus 222 ~~--------~i~~~~~~P~lv~~~~~~ 241 (304)
.| |.. ++|..++..+++
T Consensus 89 ~y~~~~~~~~~~g---GwPl~vfltPdg 113 (163)
T PF03190_consen 89 IYMNAVQAMSGSG---GWPLTVFLTPDG 113 (163)
T ss_dssp HHHHHHHHHHS------SSEEEEE-TTS
T ss_pred HHHHHHHHhcCCC---CCCceEEECCCC
Confidence 87 555 599999998875
No 403
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=57.35 E-value=21 Score=24.13 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=22.3
Q ss_pred cccEEEEEe-CCeEEEEee-CCCCHHHHHHHHHHHh
Q 021976 127 AYPTLYLFV-AGVRQFQFF-GERTRDVISAWVREKM 160 (304)
Q Consensus 127 ~~Pt~~~~~-~g~~~~~~~-g~~~~~~l~~~i~~~~ 160 (304)
.-|++++++ +|+...+.. ..++.+.+.+++.++.
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 358999998 787666654 4589999999998764
No 404
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=57.32 E-value=66 Score=26.27 Aligned_cols=69 Identities=14% Similarity=0.083 Sum_probs=45.7
Q ss_pred CChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEEEEeeCCCCHHHHHHHHHHHhCCC
Q 021976 84 WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLG 163 (304)
Q Consensus 84 wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~ 163 (304)
.|+.|+++.-.+. .+-. ...+-.||....++..++.--.+-|=++.|+ | .+..+.+.|+++|++.++++
T Consensus 20 dcpf~qr~~m~L~---~k~~-~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d-~------~~~tDs~~Ie~~Lee~l~~p 88 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGV-PFKVTTVDLSRKPEWFLDISPGGKPPVLKFD-E------KWVTDSDKIEEFLEEKLPPP 88 (221)
T ss_pred CChhHHHHHHHHH---HcCC-CceEEEeecCCCcHHHHhhCCCCCCCeEEeC-C------ceeccHHHHHHHHHHhcCCC
Confidence 4999988766555 2211 6788999999888777665444434343443 3 23457789999999988654
No 405
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=56.80 E-value=43 Score=22.15 Aligned_cols=49 Identities=12% Similarity=0.107 Sum_probs=30.2
Q ss_pred EEEEecCCCCccHHHHHHHhccCCc--eeEEEec---C-H----HHHhhcCCCCCCCCCeEE
Q 021976 184 VLGFLHDLEGMESEELAAASKLHSD--VNFYQTT---S-A----DVAEFFHIHPKSKRPALI 235 (304)
Q Consensus 184 ~v~f~~~~~~~~~~~~~~~a~~~~~--~~f~~~~---~-~----~l~~~~~i~~~~~~P~lv 235 (304)
++.|..+||..+.+....+.++.-. +.+..+. + . .+.+.+++.. .|+++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~---vP~v~ 59 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRT---VPNIF 59 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCC---CCeEE
Confidence 3578899999877766665543333 5555432 2 2 2566667764 89864
No 406
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=55.98 E-value=14 Score=27.79 Aligned_cols=34 Identities=15% Similarity=0.080 Sum_probs=23.3
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCccc
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 116 (304)
+..|+.++|+.|++....+++- ++.+-.+|..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH------QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc------CCCeEEEECCCC
Confidence 3467789999999976544431 566777776544
No 407
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=53.26 E-value=20 Score=28.40 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=18.2
Q ss_pred HHHHHhCCCccccEEEEEeCCe
Q 021976 117 KDLAKEYNILAYPTLYLFVAGV 138 (304)
Q Consensus 117 ~~~~~~~~v~~~Pt~~~~~~g~ 138 (304)
.+.+.++||.++||+++.+++.
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCCCccCEEEEEeCCe
Confidence 4567889999999999998664
No 408
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=52.78 E-value=96 Score=23.24 Aligned_cols=104 Identities=15% Similarity=0.121 Sum_probs=49.8
Q ss_pred HHHhCCCceecCCHHHHHHhhccCCeEEEEEecCCCCcc----HHHHHHH---hccCC-ceeEEEecCHHH---HhhcCC
Q 021976 157 REKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGME----SEELAAA---SKLHS-DVNFYQTTSADV---AEFFHI 225 (304)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~f~~~~~~~~----~~~~~~~---a~~~~-~~~f~~~~~~~l---~~~~~i 225 (304)
.+.......++.+.++++..+.+.+-..+....+-|+=. -.....+ .+.-+ -+.++...+.+. ++.|=.
T Consensus 11 ~ELt~~Gf~eL~T~e~Vd~~~~~~~GTtlVvVNSVCGCAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~~aR~yf~ 90 (136)
T PF06491_consen 11 EELTRAGFEELTTAEEVDEALKNKEGTTLVVVNSVCGCAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATAKAREYFE 90 (136)
T ss_dssp HHHHTTT-EE--SHHHHHHHHHH--SEEEEEEE-SSHHHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHHHHHHTST
T ss_pred HHHHHcCccccCCHHHHHHHHhCCCCcEEEEEeccccccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHHHHHHhcC
Confidence 345577899999999999999854444444556666421 1111111 11212 234444455542 233333
Q ss_pred CCCCCCCeEEEEecCCCc----eecccCCCCHHHHHHHHh
Q 021976 226 HPKSKRPALIFLHLEAGK----ATPFRHQFTRLAIANFVT 261 (304)
Q Consensus 226 ~~~~~~P~lv~~~~~~~~----~~~y~g~~~~~~i~~fi~ 261 (304)
...++.|++.+|+++.-. .+..+| ++.+.|..-+.
T Consensus 91 ~~pPSSPS~ALfKdGelvh~ieRh~IEG-r~a~~Ia~~L~ 129 (136)
T PF06491_consen 91 PYPPSSPSIALFKDGELVHFIERHHIEG-RPAEEIAENLQ 129 (136)
T ss_dssp TS---SSEEEEEETTEEEEEE-GGGTTT-S-HHHHHHHHH
T ss_pred CCCCCCchheeeeCCEEEEEeehhhcCC-CCHHHHHHHHH
Confidence 434689999999988411 122233 46666665544
No 409
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=51.45 E-value=13 Score=32.66 Aligned_cols=61 Identities=10% Similarity=0.056 Sum_probs=37.3
Q ss_pred ChhhhhhHHHH----HHHHHHhhC---CcEEEEEeCcccH---HHHHhCCCccc--cEEEEEeCCeEEEEeeC
Q 021976 85 CYWSKKLAPEF----AAAAKMLKG---EADLVMVDAYLEK---DLAKEYNILAY--PTLYLFVAGVRQFQFFG 145 (304)
Q Consensus 85 C~~C~~~~~~~----~~~~~~~~~---~~~~~~vd~~~~~---~~~~~~~v~~~--Pt~~~~~~g~~~~~~~g 145 (304)
||.|-+..-.+ +++.+.+.+ .+.++..-|--|. .--.++||.+- -...+|++|+.+.+..+
T Consensus 262 CPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv~~ 334 (346)
T TIGR00612 262 CPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQPE 334 (346)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEecCH
Confidence 66665543333 333333333 6889988887653 22346787754 36788999987766654
No 410
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=50.84 E-value=84 Score=24.50 Aligned_cols=55 Identities=2% Similarity=-0.102 Sum_probs=36.2
Q ss_pred eeEEEecCHHHHhhcCCCC---CCCCCeEEEEecCCCceecccC----CCCHHHHHHHHhcC
Q 021976 209 VNFYQTTSADVAEFFHIHP---KSKRPALIFLHLEAGKATPFRH----QFTRLAIANFVTHT 263 (304)
Q Consensus 209 ~~f~~~~~~~l~~~~~i~~---~~~~P~lv~~~~~~~~~~~y~g----~~~~~~i~~fi~~~ 263 (304)
+.+....+.++.+.|++.. +...|+.+++.+++.-...+-+ ..+.++|.+.|...
T Consensus 95 f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 95 FPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred eeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 4444556778999999862 1136789999877655544422 24667888888753
No 411
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=49.89 E-value=80 Score=25.15 Aligned_cols=52 Identities=4% Similarity=-0.089 Sum_probs=31.9
Q ss_pred ecCHHHHhhcCCCC---CCCCCeEEEEecCCCceeccc--C--CCCHHHHHHHHhcCCC
Q 021976 214 TTSADVAEFFHIHP---KSKRPALIFLHLEAGKATPFR--H--QFTRLAIANFVTHTKH 265 (304)
Q Consensus 214 ~~~~~l~~~~~i~~---~~~~P~lv~~~~~~~~~~~y~--g--~~~~~~i~~fi~~~~~ 265 (304)
..+.++++.|++.. +...|+.+++.+++.....+. + ..+.++|.+.|++...
T Consensus 99 D~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~~~ 157 (187)
T TIGR03137 99 DPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAAQY 157 (187)
T ss_pred CCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 34667888999852 112588888876654433331 1 2477888888765443
No 412
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=49.88 E-value=87 Score=21.91 Aligned_cols=71 Identities=11% Similarity=0.125 Sum_probs=40.9
Q ss_pred CCeEEEEEecC--CCCccHHHHHHHhccCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCCCceecccCCCCHHHHH
Q 021976 180 ESKLVLGFLHD--LEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIA 257 (304)
Q Consensus 180 ~~~~~v~f~~~--~~~~~~~~~~~~a~~~~~~~f~~~~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~i~ 257 (304)
++..++.|.++ .|....+.+.+++.+.+++.+......+ . .|++++.+.+...-.+|.|-=.=.++.
T Consensus 19 ~pV~l~~f~~~~~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-------~----~P~~~i~~~~~~~gIrF~GiP~GhEf~ 87 (94)
T cd02974 19 NPVELVASLDDSEKSAELLELLEEIASLSDKITLEEDNDDE-------R----KPSFSINRPGEDTGIRFAGIPMGHEFT 87 (94)
T ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhCCceEEEEecCCC-------C----CCEEEEecCCCcccEEEEecCCchhHH
Confidence 44555556553 3333455556677888888775322111 2 699998876643457887743334566
Q ss_pred HHHh
Q 021976 258 NFVT 261 (304)
Q Consensus 258 ~fi~ 261 (304)
.||.
T Consensus 88 Slil 91 (94)
T cd02974 88 SLVL 91 (94)
T ss_pred HHHH
Confidence 6653
No 413
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=49.30 E-value=84 Score=25.57 Aligned_cols=47 Identities=13% Similarity=0.044 Sum_probs=33.8
Q ss_pred eEEEecCHHHHhhcCCCCCCCCCeEEEEecCCCceecccCCCCHHHHHHHHh
Q 021976 210 NFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVT 261 (304)
Q Consensus 210 ~f~~~~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi~ 261 (304)
..+..-+|.+.++|+|+. .|++|+.... .+....|.++.+.=.+.+.
T Consensus 145 ~~gv~IDP~lF~~F~I~~---VPafVv~C~~--~yD~I~GNIsl~~ALe~iA 191 (212)
T PRK13730 145 TDGVQIDPTLFSQYGIRS---VPALVVFCSQ--GYDIIRGNLRVGQALEKVA 191 (212)
T ss_pred CCceeECHHHHHhcCCcc---ccEEEEEcCC--CCCEEEecccHHHHHHHHH
Confidence 345667999999999997 9999997543 4456668777754444444
No 414
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=49.22 E-value=18 Score=24.40 Aligned_cols=35 Identities=14% Similarity=0.344 Sum_probs=22.2
Q ss_pred CCCeEEEEecCCCceeccc-CCCCHHHHHHHHhcCC
Q 021976 230 KRPALIFLHLEAGKATPFR-HQFTRLAIANFVTHTK 264 (304)
Q Consensus 230 ~~P~lv~~~~~~~~~~~y~-g~~~~~~i~~fi~~~~ 264 (304)
.-|.++++...++..-..+ ..++.++|.+|+.++.
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 3699999987765444443 4589999999998764
No 415
>PRK13190 putative peroxiredoxin; Provisional
Probab=48.45 E-value=89 Score=25.28 Aligned_cols=54 Identities=4% Similarity=-0.017 Sum_probs=36.3
Q ss_pred eeEEEecCHHHHhhcCCCC---CCCCCeEEEEecCCCceec--c--cCCCCHHHHHHHHhc
Q 021976 209 VNFYQTTSADVAEFFHIHP---KSKRPALIFLHLEAGKATP--F--RHQFTRLAIANFVTH 262 (304)
Q Consensus 209 ~~f~~~~~~~l~~~~~i~~---~~~~P~lv~~~~~~~~~~~--y--~g~~~~~~i~~fi~~ 262 (304)
+.+....+.++++.||+.. +...|+.+++.+++..... | .+.++.+++.+.|+.
T Consensus 92 fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~ 152 (202)
T PRK13190 92 FPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKA 152 (202)
T ss_pred EEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 4454556778999999841 1237999999877643322 2 334688899888875
No 416
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=46.97 E-value=1.5e+02 Score=23.88 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=53.3
Q ss_pred cEEEEEEc--CCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCc----------------------------ccHHHHHhC
Q 021976 75 NVMVMFYA--NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY----------------------------LEKDLAKEY 123 (304)
Q Consensus 75 ~~lv~f~a--~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~----------------------------~~~~~~~~~ 123 (304)
-|+|+|+- +.-+-|--+...+.+.+.++++ ++.++.+.+| .+.++++.|
T Consensus 34 kw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~y 113 (194)
T COG0450 34 KWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAY 113 (194)
T ss_pred cEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHc
Confidence 45555553 4556677778888888888877 7777777764 245789999
Q ss_pred CCcccc------EEEEEe-CCeEEE--EeeC--CCCHHHHHHHHHH
Q 021976 124 NILAYP------TLYLFV-AGVRQF--QFFG--ERTRDVISAWVRE 158 (304)
Q Consensus 124 ~v~~~P------t~~~~~-~g~~~~--~~~g--~~~~~~l~~~i~~ 158 (304)
|+-.-. .+++.+ +|.... .|.. .++.+++..-+..
T Consensus 114 gvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idA 159 (194)
T COG0450 114 GVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDA 159 (194)
T ss_pred CCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHH
Confidence 976422 355555 674432 2222 4778887776654
No 417
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=46.59 E-value=2.1e+02 Score=25.71 Aligned_cols=81 Identities=19% Similarity=0.204 Sum_probs=55.6
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCccccEEEEEeCCeEEEEeeCCCCHHH
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDV 151 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 151 (304)
++..-+=-|++-.|..|-..-..+.-++-..+ ++.-..||-.--++-.+.-+|.++||+++ ||+.. -.|.++.++
T Consensus 115 ~g~~~FETy~SltC~nCPDVVQALN~msvlNp-~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe~f--g~GRmtlee 189 (520)
T COG3634 115 DGDFHFETYFSLTCHNCPDVVQALNLMSVLNP-RIKHTAIDGALFQDEVEARNIMAVPTVFL--NGEEF--GQGRMTLEE 189 (520)
T ss_pred CCceeEEEEEEeeccCChHHHHHHHHHHhcCC-CceeEEecchhhHhHHHhccceecceEEE--cchhh--cccceeHHH
Confidence 45566777777789888766655555554433 78888998766555567779999999866 67322 246777777
Q ss_pred HHHHHH
Q 021976 152 ISAWVR 157 (304)
Q Consensus 152 l~~~i~ 157 (304)
|..-+.
T Consensus 190 ilaki~ 195 (520)
T COG3634 190 ILAKID 195 (520)
T ss_pred HHHHhc
Confidence 766553
No 418
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=46.09 E-value=1.5e+02 Score=23.65 Aligned_cols=55 Identities=4% Similarity=-0.092 Sum_probs=34.8
Q ss_pred eEEEecCHHHHhhcCCCC-CCCC--CeEEEEecCCCceecc----cCCCCHHHHHHHHhcCC
Q 021976 210 NFYQTTSADVAEFFHIHP-KSKR--PALIFLHLEAGKATPF----RHQFTRLAIANFVTHTK 264 (304)
Q Consensus 210 ~f~~~~~~~l~~~~~i~~-~~~~--P~lv~~~~~~~~~~~y----~g~~~~~~i~~fi~~~~ 264 (304)
.+....+.++++.||+.. ..+. |+.+++.+++.....+ ....+.+++.+.+..-.
T Consensus 95 pllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 95 AMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred eEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 344446778999999831 1124 8889998776433322 12357899999987533
No 419
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=45.38 E-value=28 Score=25.36 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=20.8
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCc
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY 114 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~ 114 (304)
+..|..+.|+.|++....+++- ++.+-.+|..
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~------gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA------GHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEeehh
Confidence 3467889999999876544431 4555555543
No 420
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=44.64 E-value=1.2e+02 Score=22.12 Aligned_cols=74 Identities=8% Similarity=0.049 Sum_probs=46.4
Q ss_pred ChhhhhhHHHHHHHHHHhhC-CcEEEEEeC-ccc-----------HHHHHhCCCc--cccEEEEEeCCeEEEEeeCCCCH
Q 021976 85 CYWSKKLAPEFAAAAKMLKG-EADLVMVDA-YLE-----------KDLAKEYNIL--AYPTLYLFVAGVRQFQFFGERTR 149 (304)
Q Consensus 85 C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~-~~~-----------~~~~~~~~v~--~~Pt~~~~~~g~~~~~~~g~~~~ 149 (304)
-+.-++....+.+....+.. ++.++.+-- ... ..+-++|++. ++-.+++=++|....++.++.+.
T Consensus 22 d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~~ 101 (118)
T PF13778_consen 22 DPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPIDP 101 (118)
T ss_pred CHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEEEecCCCCCH
Confidence 34445555566654444544 565555522 222 2677888865 33344444688788899999999
Q ss_pred HHHHHHHHH
Q 021976 150 DVISAWVRE 158 (304)
Q Consensus 150 ~~l~~~i~~ 158 (304)
++|-+.|..
T Consensus 102 ~~lf~~ID~ 110 (118)
T PF13778_consen 102 EELFDTIDA 110 (118)
T ss_pred HHHHHHHhC
Confidence 999888854
No 421
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=44.48 E-value=1.3e+02 Score=22.18 Aligned_cols=51 Identities=4% Similarity=0.085 Sum_probs=33.2
Q ss_pred ceeEEEecCHHHHhhcCCCCC------CCCCeEEEEecCCCceecccCCCCHHHHHH
Q 021976 208 DVNFYQTTSADVAEFFHIHPK------SKRPALIFLHLEAGKATPFRHQFTRLAIAN 258 (304)
Q Consensus 208 ~~~f~~~~~~~l~~~~~i~~~------~~~P~lv~~~~~~~~~~~y~g~~~~~~i~~ 258 (304)
.+.+....+..+.+.|++... ...|+.+++.+++.....+.|..+.+++.+
T Consensus 81 ~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~ 137 (140)
T cd03017 81 PFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEE 137 (140)
T ss_pred CceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHH
Confidence 445555566788899998750 011888888877666677777665555543
No 422
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=44.23 E-value=1.1e+02 Score=21.34 Aligned_cols=55 Identities=11% Similarity=0.111 Sum_probs=31.6
Q ss_pred EcCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeCcccHHHHHhC--------CCccccEEEEEeCC
Q 021976 81 YANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEY--------NILAYPTLYLFVAG 137 (304)
Q Consensus 81 ~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~~~g 137 (304)
|.+.+.-.++....=+.+..-++. ++.|-.+|++.+++.-+.+ |-..+|.+++ ++
T Consensus 5 Y~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi--~~ 68 (92)
T cd03030 5 YIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFN--GD 68 (92)
T ss_pred EEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEE--CC
Confidence 333344455554444444444544 7999999998776543332 3356777754 55
No 423
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=43.25 E-value=91 Score=20.28 Aligned_cols=55 Identities=16% Similarity=0.055 Sum_probs=32.7
Q ss_pred EEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcc----cHHHHHhCCCccccEEEEEeCCe
Q 021976 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPTLYLFVAGV 138 (304)
Q Consensus 78 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~ 138 (304)
..|+.+.|+.|++.+-.+.+..- ...+..+|... .+++.+-..-..+|++. .+|.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl----~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~ 60 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL----RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDN 60 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC----CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCE
Confidence 46778889999887644433322 34556666532 23455445566789885 3663
No 424
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=42.40 E-value=78 Score=23.54 Aligned_cols=23 Identities=26% Similarity=0.027 Sum_probs=13.6
Q ss_pred CeEEEEEe-cCCCCccHHHHHHHh
Q 021976 181 SKLVLGFL-HDLEGMESEELAAAS 203 (304)
Q Consensus 181 ~~~~v~f~-~~~~~~~~~~~~~~a 203 (304)
+.++|.|+ ..||..+.+.+..+.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~ 47 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALS 47 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHH
Confidence 34455554 688887666555543
No 425
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=42.20 E-value=92 Score=19.96 Aligned_cols=53 Identities=9% Similarity=0.061 Sum_probs=30.6
Q ss_pred EEEEecCCCCccHHHHHHHhccCCceeEEEe-cCHHHHhhc-----CCCCCCCCCeEEEEecC
Q 021976 184 VLGFLHDLEGMESEELAAASKLHSDVNFYQT-TSADVAEFF-----HIHPKSKRPALIFLHLE 240 (304)
Q Consensus 184 ~v~f~~~~~~~~~~~~~~~a~~~~~~~f~~~-~~~~l~~~~-----~i~~~~~~P~lv~~~~~ 240 (304)
++.|+.+||.++.+.-..+......+....+ .++...+.+ +... .|+++ +..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~---vP~i~-~~~g 60 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMT---VPTVK-FADG 60 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCce---eCEEE-ECCC
Confidence 4578899999877665555444434443333 455554443 5554 89864 5433
No 426
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=41.93 E-value=61 Score=20.61 Aligned_cols=52 Identities=15% Similarity=-0.021 Sum_probs=30.6
Q ss_pred EEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcc----cHHHHHhCCCccccEEEE
Q 021976 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPTLYL 133 (304)
Q Consensus 78 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~ 133 (304)
..|+.++|+.|++.+-.+....- ......+|... .+.+.+......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~----~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGI----PYEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC----CcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 35778899999987655554332 33445555422 234444444557898864
No 427
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=39.89 E-value=46 Score=27.73 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=32.9
Q ss_pred cCHHHHhhcCCCCCCCCCeEEEEecCCCceecccCCCCHHHHHHHHhcC
Q 021976 215 TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (304)
Q Consensus 215 ~~~~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 263 (304)
.+.++++++|+++ -|+++ +.++ + .+.|..+.+.|.++|.+.
T Consensus 190 ~~~~la~~lgi~g---TPtiv-~~~G--~--~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 190 DHYALGVQFGVQG---TPAIV-LSNG--T--LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred HhHHHHHHcCCcc---ccEEE-EcCC--e--EeeCCCCHHHHHHHHHHc
Confidence 5678999999997 89988 5444 2 448888999999999865
No 428
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=39.15 E-value=97 Score=22.65 Aligned_cols=44 Identities=7% Similarity=0.160 Sum_probs=36.4
Q ss_pred HHHhhcCCCCCCCCCeEEEEecCCCceecccCCCCHHHHHHHHhcC
Q 021976 218 DVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (304)
Q Consensus 218 ~l~~~~~i~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 263 (304)
.+.+.|+++. +.-++++...+++...++.++++.++|.+.|...
T Consensus 68 ~lr~~l~~~~--~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 68 ALRKRLRIPP--GGFTVVLIGKDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred HHHHHhCCCC--CceEEEEEeCCCcEEEecCCCCCHHHHHHHHhCC
Confidence 7889999874 4567777877777888999999999999998853
No 429
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=36.51 E-value=2e+02 Score=22.21 Aligned_cols=34 Identities=9% Similarity=0.196 Sum_probs=26.0
Q ss_pred cCCceeEEEecCHHHHhhcCCCCCCCCCeEEEEecCC
Q 021976 205 LHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEA 241 (304)
Q Consensus 205 ~~~~~~f~~~~~~~l~~~~~i~~~~~~P~lv~~~~~~ 241 (304)
....+.+....+..+.+.|++.. .|+++++.+++
T Consensus 87 ~~~~~~~l~D~~~~~~~~~~v~~---~P~~~lid~~G 120 (171)
T cd02969 87 HGYPFPYLLDETQEVAKAYGAAC---TPDFFLFDPDG 120 (171)
T ss_pred CCCCceEEECCchHHHHHcCCCc---CCcEEEECCCC
Confidence 33445666667778999999986 89999998765
No 430
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=36.07 E-value=90 Score=24.78 Aligned_cols=85 Identities=18% Similarity=0.350 Sum_probs=48.9
Q ss_pred CCCcEEEEEE-cCCChhhhhhHHHHHHHHHHhhC-CcEEEEEeC----------------------------cccHHHHH
Q 021976 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDA----------------------------YLEKDLAK 121 (304)
Q Consensus 72 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~----------------------------~~~~~~~~ 121 (304)
.++.++..|| -++---|--+.-.+...+.++++ +..++.+.+ |.+.++|+
T Consensus 32 ~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Isr 111 (196)
T KOG0852|consen 32 KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISR 111 (196)
T ss_pred cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhHH
Confidence 4677777777 34544555566677777777766 444444443 34567899
Q ss_pred hCCCc----ccc--EEEEEe-CCeEEEEe-----eCCCCHHHHHHHHH
Q 021976 122 EYNIL----AYP--TLYLFV-AGVRQFQF-----FGERTRDVISAWVR 157 (304)
Q Consensus 122 ~~~v~----~~P--t~~~~~-~g~~~~~~-----~g~~~~~~l~~~i~ 157 (304)
+|||- |.+ -+++.+ +| .+.++ .-.++.++...-++
T Consensus 112 dyGvL~~~~G~~lRglfIId~~g-i~R~it~NDlpvgRSVdE~lRLvq 158 (196)
T KOG0852|consen 112 DYGVLKEDEGIALRGLFIIDPDG-ILRQITINDLPVGRSVDETLRLVQ 158 (196)
T ss_pred hcCceecCCCcceeeeEEEcccc-ceEEeeecccCCCccHHHHHHHHH
Confidence 99973 455 344444 55 33222 12366666555443
No 431
>PHA02291 hypothetical protein
Probab=34.26 E-value=42 Score=23.90 Aligned_cols=24 Identities=13% Similarity=0.415 Sum_probs=15.3
Q ss_pred CcchhhHHHHHHHHHHHHHHhccC
Q 021976 1 MEKTKTLLLLLTSSIILFKLYLFP 24 (304)
Q Consensus 1 M~~~~~~~~l~~~~~l~~~~~~~~ 24 (304)
|.++..++++++.++|++++.+..
T Consensus 1 MS~K~~iFYiL~~~VL~~si~sY~ 24 (132)
T PHA02291 1 MSRKASIFYILVVIVLAFSISSYY 24 (132)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHh
Confidence 656666666666677777665443
No 432
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=31.99 E-value=58 Score=23.91 Aligned_cols=21 Identities=10% Similarity=0.145 Sum_probs=16.2
Q ss_pred EEEEEcCCChhhhhhHHHHHH
Q 021976 77 MVMFYANWCYWSKKLAPEFAA 97 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~ 97 (304)
+..|+.|.|..|++....+++
T Consensus 3 itiy~~p~C~t~rka~~~L~~ 23 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE 23 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 456888999999998765544
No 433
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=31.27 E-value=1.8e+02 Score=20.18 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=40.2
Q ss_pred CCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCC-CccccEEEEEeCCeEEEEeeCCCCHHHHHHHHHHHhC
Q 021976 83 NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYN-ILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMT 161 (304)
Q Consensus 83 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (304)
.+|+.|++.+=.+.+..- ...+..||....++...+.+ ...+|++. .+|..+ .+...|.++|.+...
T Consensus 20 g~cpf~~rvrl~L~eKgi----~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i------~eS~~I~eYLde~~~ 87 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGV----VFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVK------TDNNKIEEFLEETLC 87 (91)
T ss_pred CCChhHHHHHHHHHHCCC----ceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEe------cCHHHHHHHHHHHcc
Confidence 579999987654443211 34456666666555445544 55789664 345221 456778888887764
Q ss_pred C
Q 021976 162 L 162 (304)
Q Consensus 162 ~ 162 (304)
+
T Consensus 88 ~ 88 (91)
T cd03061 88 P 88 (91)
T ss_pred C
Confidence 3
No 434
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=30.28 E-value=60 Score=22.15 Aligned_cols=7 Identities=43% Similarity=0.676 Sum_probs=4.2
Q ss_pred CcchhhH
Q 021976 1 MEKTKTL 7 (304)
Q Consensus 1 M~~~~~~ 7 (304)
|+|++.+
T Consensus 1 MKK~kii 7 (85)
T PF11337_consen 1 MKKKKII 7 (85)
T ss_pred CCchHHH
Confidence 8775543
No 435
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=29.92 E-value=2.5e+02 Score=21.25 Aligned_cols=28 Identities=14% Similarity=0.029 Sum_probs=16.7
Q ss_pred EEEEecCCCceecccCCCCHHHHHHHHh
Q 021976 234 LIFLHLEAGKATPFRHQFTRLAIANFVT 261 (304)
Q Consensus 234 lv~~~~~~~~~~~y~g~~~~~~i~~fi~ 261 (304)
.+++.+.+.-...|.|..+.++|..-|.
T Consensus 123 tflID~~G~v~~~~~g~~~~~~l~~~i~ 150 (153)
T TIGR02540 123 KYLVNPEGQVVKFWRPEEPVEEIRPEIT 150 (153)
T ss_pred EEEEcCCCcEEEEECCCCCHHHHHHHHH
Confidence 4555555555566666666666666554
No 436
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=28.93 E-value=58 Score=23.51 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=22.3
Q ss_pred EEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCccc
Q 021976 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (304)
Q Consensus 78 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 116 (304)
..|+.+.|+.|++....+++- ++.+-.+|..++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~~ 34 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA------GIEPEIVEYLKT 34 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEecccC
Confidence 467889999999987555442 455666665443
No 437
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=28.90 E-value=1.3e+02 Score=23.35 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=23.3
Q ss_pred eeEEEecCHHHHhhcCCCCCCCCCeEEEEecCC
Q 021976 209 VNFYQTTSADVAEFFHIHPKSKRPALIFLHLEA 241 (304)
Q Consensus 209 ~~f~~~~~~~l~~~~~i~~~~~~P~lv~~~~~~ 241 (304)
+.|+.....++.++|++.. .|++++.++.+
T Consensus 97 iPf~d~~~~~l~~ky~v~~---iP~l~i~~~dG 126 (157)
T KOG2501|consen 97 IPFGDDLIQKLSEKYEVKG---IPALVILKPDG 126 (157)
T ss_pred ecCCCHHHHHHHHhcccCc---CceeEEecCCC
Confidence 3444445668899999996 99999998775
No 438
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=28.48 E-value=2.5e+02 Score=20.98 Aligned_cols=94 Identities=14% Similarity=0.264 Sum_probs=51.8
Q ss_pred eecCCHHHHHHhhcc-CCeEEEE-EecCCCCc---cHHHHHHHh-ccCCceeEE---EecCHHHHhhcCCCCCCCCCeEE
Q 021976 165 YSITTTDEAERILTV-ESKLVLG-FLHDLEGM---ESEELAAAS-KLHSDVNFY---QTTSADVAEFFHIHPKSKRPALI 235 (304)
Q Consensus 165 ~~l~~~~~~~~~~~~-~~~~~v~-f~~~~~~~---~~~~~~~~a-~~~~~~~f~---~~~~~~l~~~~~i~~~~~~P~lv 235 (304)
..+++..+++..+.+ .+.++|. |-..|... .-+.+...+ .+..-..++ ..+-++..+.|++.. .|+++
T Consensus 6 p~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~---p~tvm 82 (142)
T KOG3414|consen 6 PTLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYD---PPTVM 82 (142)
T ss_pred cccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccC---CceEE
Confidence 345666777666543 3444444 55554433 334455555 333333333 346678889999996 88888
Q ss_pred EEecCCCceecc--------cCCC-CHHHHHHHHh
Q 021976 236 FLHLEAGKATPF--------RHQF-TRLAIANFVT 261 (304)
Q Consensus 236 ~~~~~~~~~~~y--------~g~~-~~~~i~~fi~ 261 (304)
+|-++..-...+ ++.+ +++++.+-++
T Consensus 83 fFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie 117 (142)
T KOG3414|consen 83 FFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIE 117 (142)
T ss_pred EEEcCceEEEeeCCCCCceEEEEeccHHHHHHHHH
Confidence 886553222222 2222 5677777665
No 439
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=28.30 E-value=60 Score=18.23 Aligned_cols=22 Identities=5% Similarity=0.208 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHhcCCCCcEEee
Q 021976 250 QFTRLAIANFVTHTKHPLVVTL 271 (304)
Q Consensus 250 ~~~~~~i~~fi~~~~~p~~~~l 271 (304)
.++.++|.+|+..+..|.=...
T Consensus 3 tWs~~~L~~wL~~~gi~~~~~~ 24 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPVPKSA 24 (38)
T ss_pred CCCHHHHHHHHHHcCCCCCCCC
Confidence 4788999999999988876554
No 440
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=27.44 E-value=83 Score=25.50 Aligned_cols=38 Identities=21% Similarity=0.424 Sum_probs=25.3
Q ss_pred HHHHhCCCccccEEEEEeC-CeEEEEeeCCCCHHHHHHHH
Q 021976 118 DLAKEYNILAYPTLYLFVA-GVRQFQFFGERTRDVISAWV 156 (304)
Q Consensus 118 ~~~~~~~v~~~Pt~~~~~~-g~~~~~~~g~~~~~~l~~~i 156 (304)
+-+.+.||.|+|++++=.+ | ....|-|.--.+.+.+++
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~-~~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKG-KTEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCC-CccceecCCcHHHHHHHh
Confidence 3456789999999988542 3 334677766666665554
No 441
>PRK13617 psbV cytochrome c-550; Provisional
Probab=27.38 E-value=33 Score=26.99 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=17.9
Q ss_pred CCCcEEcChhcHHHHhcCCCcEEEEEEcCCChhhhh
Q 021976 55 AKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKK 90 (304)
Q Consensus 55 ~~~v~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~ 90 (304)
....+.++.+++.. ++-+ | ...|..|+.
T Consensus 48 ~g~~~~~s~~~~~~----G~~~---F-~~~C~~CH~ 75 (170)
T PRK13617 48 SGSQVTFSESEIKA----GRKV---F-NTSCGTCHA 75 (170)
T ss_pred CCCeEEeCHHHHHH----HHHH---H-Hcchhhhcc
Confidence 45667777777653 2222 3 778999984
No 442
>PRK15000 peroxidase; Provisional
Probab=26.81 E-value=2.7e+02 Score=22.46 Aligned_cols=54 Identities=4% Similarity=-0.017 Sum_probs=36.6
Q ss_pred eeEEEecCHHHHhhcCCCC---CCCCCeEEEEecCCCceecccC----CCCHHHHHHHHhc
Q 021976 209 VNFYQTTSADVAEFFHIHP---KSKRPALIFLHLEAGKATPFRH----QFTRLAIANFVTH 262 (304)
Q Consensus 209 ~~f~~~~~~~l~~~~~i~~---~~~~P~lv~~~~~~~~~~~y~g----~~~~~~i~~fi~~ 262 (304)
+.+....+.++++.|++.. +...|+.+++.+.+.-...+.+ .++.+++.+.+..
T Consensus 100 fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 100 YAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred ceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 4445556778999999862 1237999999877654444433 2477888888875
No 443
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=26.78 E-value=66 Score=23.31 Aligned_cols=33 Identities=9% Similarity=0.100 Sum_probs=22.7
Q ss_pred EEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCccc
Q 021976 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (304)
Q Consensus 78 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 116 (304)
..|+.+.|+.|++....+++- ++.+-.+|..++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK------GIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccCC
Confidence 467889999999987666552 455666665443
No 444
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=26.64 E-value=85 Score=27.73 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=46.4
Q ss_pred CcEEEEEeCcccHHHHHhCCCccccEEEEEe--CCeEEEEeeCCCCHHHHHHHHHHHhC
Q 021976 105 EADLVMVDAYLEKDLAKEYNILAYPTLYLFV--AGVRQFQFFGERTRDVISAWVREKMT 161 (304)
Q Consensus 105 ~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~--~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (304)
.+..+..|..+...+..-|.+...|.+.+++ .|+.+.+..|....+++.+-+.+.+.
T Consensus 132 ~wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~ 190 (356)
T KOG1364|consen 132 RWLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFID 190 (356)
T ss_pred eEEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHh
Confidence 4555566667777888899999999998887 68888899898888888888887764
No 445
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=25.79 E-value=1.7e+02 Score=18.73 Aligned_cols=69 Identities=12% Similarity=0.111 Sum_probs=38.5
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCc----ccHHHHHhCCCccccEEEEEeCCeEEEEeeCCCCHHHH
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY----LEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVI 152 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 152 (304)
+..|+.+.|+.|++.+-.+....- ......++.. ..+.+.+......+|++. .+|.. -.....|
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~--~~g~~------l~es~aI 69 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGV----DYELVPVDLTKGEHKSPEHLARNPFGQIPALE--DGDLK------LFESRAI 69 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCC----CcEEEEeCccccccCCHHHHhhCCCCCCCEEE--ECCEE------EEcHHHH
Confidence 445667779999887765554332 3344445542 123455555566789874 34522 1344566
Q ss_pred HHHHH
Q 021976 153 SAWVR 157 (304)
Q Consensus 153 ~~~i~ 157 (304)
.+|+.
T Consensus 70 ~~yL~ 74 (76)
T cd03053 70 TRYLA 74 (76)
T ss_pred HHHHh
Confidence 66664
No 446
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=25.73 E-value=4.3e+02 Score=23.57 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=63.3
Q ss_pred EEEEeCcccH---HHHHhCCCcccc--EEEEEe-CCeEEEEeeCCCCHHHHHHHHHHHhCCCceecCCHHHHHHhhccCC
Q 021976 108 LVMVDAYLEK---DLAKEYNILAYP--TLYLFV-AGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVES 181 (304)
Q Consensus 108 ~~~vd~~~~~---~~~~~~~v~~~P--t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~ 181 (304)
++..|+++.+ ++.+. |...| |+.+.+ ....+....|+ ..+.+..++.+.....-.. ..+-.+.+.++..
T Consensus 50 vaafDVd~~KVGkdlsea--i~~~pN~t~~~~~vp~~~v~V~~G~-~lDg~~~~~~~~~~~~~~~--~~dv~~~lk~~~~ 124 (351)
T TIGR03450 50 VAAFDVDAKKVGFDLSDA--IFASENNTIKIADVPPTGVTVQRGP-TLDGLGKYYRDTIEESDAE--PVDVVQALKDAKV 124 (351)
T ss_pred EEEEeccccccCccHHHH--HhcCCCCceeeeccCCCCCEEeecc-cccchhhHhhccccccccC--HHHHHHHHHhcCC
Confidence 4566666542 44444 55566 344444 22123333453 4566667766555444222 2244455555566
Q ss_pred eEEEEEecCCCCccHHHHHHHhccCCceeEEE------ecCHHHHhhcCCCC
Q 021976 182 KLVLGFLHDLEGMESEELAAASKLHSDVNFYQ------TTSADVAEFFHIHP 227 (304)
Q Consensus 182 ~~~v~f~~~~~~~~~~~~~~~a~~~~~~~f~~------~~~~~l~~~~~i~~ 227 (304)
.++|-|.........+.++.+| +...+.|.. ...++++++|.-.+
T Consensus 125 dVlvnylPvGs~~A~~~YA~AA-l~aG~afVN~~P~~ia~~p~~a~~f~e~g 175 (351)
T TIGR03450 125 DVLVSYLPVGSEEADKFYAQCA-IDAGVAFVNALPVFIASDPEWAKKFTDAG 175 (351)
T ss_pred CEEEECCccchHHHHHHHHHHH-HHcCCceEeccCccccCCHHHHHHHHHCC
Confidence 6777777776666777777766 335555542 36778888776443
No 447
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.26 E-value=2.7e+02 Score=19.88 Aligned_cols=68 Identities=21% Similarity=0.340 Sum_probs=39.8
Q ss_pred cHHHHhcCCCcEEEEEEc---CCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCC-CccccEE-EEEeCC
Q 021976 65 NFSEFMGKNRNVMVMFYA---NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYN-ILAYPTL-YLFVAG 137 (304)
Q Consensus 65 ~~~~~~~~~~~~lv~f~a---~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~~~~g 137 (304)
..++.+++++++|.+=-+ |-|+.+.+....+... . -+.|+.+|+-.++++-+... ....||+ -+|-+|
T Consensus 7 ~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~----g-~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~G 79 (105)
T COG0278 7 RIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSAC----G-VVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNG 79 (105)
T ss_pred HHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHc----C-CcceeEEeeccCHHHHhccHhhcCCCCCceeeECC
Confidence 345566656544443333 5677776655444332 2 27899999998888765543 2345554 344478
No 448
>PLN02412 probable glutathione peroxidase
Probab=24.01 E-value=3.4e+02 Score=20.97 Aligned_cols=32 Identities=9% Similarity=0.086 Sum_probs=24.7
Q ss_pred CCeEEEEecCCCceecccCCCCHHHHHHHHhc
Q 021976 231 RPALIFLHLEAGKATPFRHQFTRLAIANFVTH 262 (304)
Q Consensus 231 ~P~lv~~~~~~~~~~~y~g~~~~~~i~~fi~~ 262 (304)
.|+.+++.+++.....+.|..+.+++...|..
T Consensus 131 ~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~ 162 (167)
T PLN02412 131 NFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQN 162 (167)
T ss_pred CCeeEEECCCCcEEEEECCCCCHHHHHHHHHH
Confidence 47777787777677777888888888888764
No 449
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=23.60 E-value=2.7e+02 Score=19.67 Aligned_cols=34 Identities=15% Similarity=0.299 Sum_probs=18.9
Q ss_pred ceeEEEecCHHHHhhcCCCCC---CCCCeEEEEecCC
Q 021976 208 DVNFYQTTSADVAEFFHIHPK---SKRPALIFLHLEA 241 (304)
Q Consensus 208 ~~~f~~~~~~~l~~~~~i~~~---~~~P~lv~~~~~~ 241 (304)
.+.+....+.++.+.|++... ...|+++++.+++
T Consensus 83 ~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g 119 (124)
T PF00578_consen 83 PFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDG 119 (124)
T ss_dssp SSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTS
T ss_pred ccccccCcchHHHHHcCCccccCCceEeEEEEECCCC
Confidence 334444455567777776610 1267777776654
No 450
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=23.36 E-value=94 Score=19.66 Aligned_cols=14 Identities=50% Similarity=0.645 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHh
Q 021976 8 LLLLTSSIILFKLY 21 (304)
Q Consensus 8 ~~l~~~~~l~~~~~ 21 (304)
+.|+++++++|+-+
T Consensus 12 iVLLISfiIlfgRl 25 (59)
T PF11119_consen 12 IVLLISFIILFGRL 25 (59)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666777777633
No 451
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.64 E-value=1.3e+02 Score=24.94 Aligned_cols=81 Identities=12% Similarity=0.199 Sum_probs=52.2
Q ss_pred ceecCCHHHHHHhhccCCeEEEEEecCCCCc---cHHHHHHHhccCCceeEEEe---cCHHHHhhcCCCCCCCCCeEEEE
Q 021976 164 TYSITTTDEAERILTVESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFL 237 (304)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~P~lv~~ 237 (304)
+..+...+++ +.+.....++.|...|..+ ..+.+..++....++.|..+ ..+++++.+.+.. .|..+.+
T Consensus 3 v~~i~~~~~f--~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~---vp~~~~~ 77 (227)
T KOG0911|consen 3 VQFIVFQEQF--LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEA---VPYFVFF 77 (227)
T ss_pred ceeehhHHHH--HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhc---Cceeeee
Confidence 3445555666 4445666677777888765 34445556654477777755 5678999999997 8998888
Q ss_pred ecCCCceecccCC
Q 021976 238 HLEAGKATPFRHQ 250 (304)
Q Consensus 238 ~~~~~~~~~y~g~ 250 (304)
..+. ......|.
T Consensus 78 ~~~~-~v~~l~~~ 89 (227)
T KOG0911|consen 78 FLGE-KVDRLSGA 89 (227)
T ss_pred ecch-hhhhhhcc
Confidence 6553 44444443
No 452
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=22.18 E-value=1.2e+02 Score=22.48 Aligned_cols=22 Identities=9% Similarity=0.237 Sum_probs=16.4
Q ss_pred EEEEEEcCCChhhhhhHHHHHH
Q 021976 76 VMVMFYANWCYWSKKLAPEFAA 97 (304)
Q Consensus 76 ~lv~f~a~wC~~C~~~~~~~~~ 97 (304)
.+..|+-+.|..|++....+++
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~ 23 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKA 23 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHH
Confidence 3556788999999997765554
No 453
>COG3411 Ferredoxin [Energy production and conversion]
Probab=22.10 E-value=2.1e+02 Score=18.48 Aligned_cols=30 Identities=13% Similarity=0.284 Sum_probs=23.7
Q ss_pred ccEEEEEeCCeEEEEeeCCCCHHHHHHHHHHHhC
Q 021976 128 YPTLYLFVAGVRQFQFFGERTRDVISAWVREKMT 161 (304)
Q Consensus 128 ~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (304)
=|++++|.+| .+-+..+.+...+.+++++.
T Consensus 17 gPvl~vYpeg----vWY~~V~p~~a~rIv~~hl~ 46 (64)
T COG3411 17 GPVLVVYPEG----VWYTRVDPEDARRIVQSHLL 46 (64)
T ss_pred CCEEEEecCC----eeEeccCHHHHHHHHHHHHh
Confidence 4999999999 34455788889999988874
No 454
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=22.08 E-value=99 Score=21.47 Aligned_cols=37 Identities=5% Similarity=-0.061 Sum_probs=19.4
Q ss_pred CCCcEEEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEE
Q 021976 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMV 111 (304)
Q Consensus 72 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v 111 (304)
+.+||+=-. |-||+-+....+=.+.......+..+.+
T Consensus 48 ~YePWF~Pl---~EPpSGEIESLLFslQaaiGa~IIgY~l 84 (97)
T COG1930 48 GYEPWFQPL---WEPPSGEIESLLFSLQAAIGAGIIGYFL 84 (97)
T ss_pred CCCcccccc---cCCCCccHHHHHHHHHHHhcceeeeeee
Confidence 346664333 4556666666666666655544433333
No 455
>PRK15396 murein lipoprotein; Provisional
Probab=21.92 E-value=1e+02 Score=20.83 Aligned_cols=15 Identities=27% Similarity=0.228 Sum_probs=8.1
Q ss_pred CcchhhHHHHHHHHH
Q 021976 1 MEKTKTLLLLLTSSI 15 (304)
Q Consensus 1 M~~~~~~~~l~~~~~ 15 (304)
|+++++++..++.++
T Consensus 1 m~~~kl~l~av~ls~ 15 (78)
T PRK15396 1 MNRTKLVLGAVILGS 15 (78)
T ss_pred CchhHHHHHHHHHHH
Confidence 766666554444433
No 456
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=21.66 E-value=33 Score=25.80 Aligned_cols=70 Identities=17% Similarity=0.323 Sum_probs=41.3
Q ss_pred CChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCcc-cc---EEEEEeCCeEEEEeeCCCCHHHHHHHHHHH
Q 021976 84 WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILA-YP---TLYLFVAGVRQFQFFGERTRDVISAWVREK 159 (304)
Q Consensus 84 wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~-~P---t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (304)
-|++|++..|.+--- +.-+|.+.|... =| .++-...|..-..++| +|-+++
T Consensus 11 ~CPhCRQ~ipALtLT-----------------DtYLC~rHGaFEAdP~t~eLVHLqSgR~Wr~W~g--------~WYRQH 65 (163)
T TIGR02652 11 RCPHCRQNIPALTLT-----------------DTYLCNRHGAFEADPETGELVHLQSGRRWRLWEG--------QWYRQH 65 (163)
T ss_pred cCchhhcccchheec-----------------ceeeccCCCccccCCCCCceEEeecCceeeeccc--------hhhhhc
Confidence 499999988754221 223566666432 23 4566667755556665 577777
Q ss_pred hCCCceecCCHHHHHHhhc
Q 021976 160 MTLGTYSITTTDEAERILT 178 (304)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~ 178 (304)
+.+.-..+.-.+.++.+-.
T Consensus 66 thpDGiRfEIheaLDrLyt 84 (163)
T TIGR02652 66 THPDGIRFEIHEALDRLFT 84 (163)
T ss_pred cCCCceeEeHHHHHHHHHh
Confidence 7666555544555655543
No 457
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=21.65 E-value=32 Score=25.81 Aligned_cols=70 Identities=16% Similarity=0.292 Sum_probs=40.7
Q ss_pred CChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCCcc-cc---EEEEEeCCeEEEEeeCCCCHHHHHHHHHHH
Q 021976 84 WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILA-YP---TLYLFVAGVRQFQFFGERTRDVISAWVREK 159 (304)
Q Consensus 84 wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~-~P---t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (304)
-|++|++..|.+--- +.-+|.+.|... =| .++-...|..-..+.| +|-+++
T Consensus 8 ~CPhCRq~ipALtLT-----------------DtYLC~rHGaFEAdp~t~eLVHLqSgR~Wr~W~~--------~WyrQH 62 (161)
T PF09654_consen 8 QCPHCRQTIPALTLT-----------------DTYLCPRHGAFEADPKTGELVHLQSGRHWRLWEG--------EWYRQH 62 (161)
T ss_pred cCchhhcccchheec-----------------ceeeccCccccccCCCCCceEEeecCceeeeccc--------hhhhhc
Confidence 499999988754221 223466666432 23 4556667755555555 577777
Q ss_pred hCCCceecCCHHHHHHhhc
Q 021976 160 MTLGTYSITTTDEAERILT 178 (304)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~ 178 (304)
+.+.-..+.-.+.++.+-.
T Consensus 63 thpDGiRfEIheaLDrLyt 81 (161)
T PF09654_consen 63 THPDGIRFEIHEALDRLYT 81 (161)
T ss_pred cCCCceeEeHHHHHHHHHh
Confidence 7666555544555655543
No 458
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=21.49 E-value=78 Score=20.27 Aligned_cols=34 Identities=0% Similarity=-0.063 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHhcCCCCcEEeeCccchhhhhcCC
Q 021976 250 QFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDP 283 (304)
Q Consensus 250 ~~~~~~i~~fi~~~~~p~~~~l~~~~~~~~~~~~ 283 (304)
++..+++..|++.+..+...+++.....+++.+.
T Consensus 24 PI~L~el~~~L~~~g~~~~~~~~~~~l~~~lD~~ 57 (64)
T PF09494_consen 24 PINLEELHAWLKASGIGFDRKVDPSKLKEWLDSQ 57 (64)
T ss_pred CccHHHHHHHHHHcCCCccceeCHHHHHHHHHHC
Confidence 5788899999999999999999998888877654
No 459
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=21.20 E-value=1e+02 Score=21.40 Aligned_cols=28 Identities=11% Similarity=-0.007 Sum_probs=13.5
Q ss_pred CCcEEEEEEcCCChhhhhhHHHHHHHHHHhh
Q 021976 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLK 103 (304)
Q Consensus 73 ~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~ 103 (304)
.+||+=-+|- ||.-+....+=.++....
T Consensus 51 Y~PWf~PlwE---PpsGEiESlLFaLQAaiG 78 (91)
T TIGR01165 51 YKPWFSPLWE---PPSGEIESLLFALQAALG 78 (91)
T ss_pred Cccccccccc---CCcchHHHHHHHHHHHhh
Confidence 4565544443 345555555544444443
No 460
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=21.03 E-value=1e+02 Score=29.11 Aligned_cols=77 Identities=14% Similarity=0.249 Sum_probs=52.8
Q ss_pred EEcChhcHHHHhcCCCcEEEEEEcCCChhhhhhHH-HH--HHHHHHhhCCcEEEEEeCcccHHHHH--------hCCCcc
Q 021976 59 VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAP-EF--AAAAKMLKGEADLVMVDAYLEKDLAK--------EYNILA 127 (304)
Q Consensus 59 ~~l~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~-~~--~~~~~~~~~~~~~~~vd~~~~~~~~~--------~~~v~~ 127 (304)
..-.++-|+++-.+++++++..--+.|..|.-+.. .| ++.++.+.+++.-++||-++-+++=+ ..|--|
T Consensus 98 ypwgqeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GG 177 (786)
T KOG2244|consen 98 YPWGQEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGG 177 (786)
T ss_pred CcchHHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCC
Confidence 33456778888899999999999999999987654 23 33555555566667777766655433 346667
Q ss_pred ccEEEEEe
Q 021976 128 YPTLYLFV 135 (304)
Q Consensus 128 ~Pt~~~~~ 135 (304)
.|--++..
T Consensus 178 WPmsV~LT 185 (786)
T KOG2244|consen 178 WPMSVFLT 185 (786)
T ss_pred CceeEEeC
Confidence 78665553
No 461
>PRK10026 arsenate reductase; Provisional
Probab=20.94 E-value=1.2e+02 Score=23.06 Aligned_cols=32 Identities=6% Similarity=0.137 Sum_probs=21.6
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCc
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY 114 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~ 114 (304)
+..|+.+.|+.|++....+++- ++.+-.+|.-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~------gi~~~~~d~~ 35 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS------GTEPTIIHYL 35 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCcEEEeee
Confidence 4567889999999987665542 4555555543
No 462
>PRK10853 putative reductase; Provisional
Probab=20.92 E-value=1.1e+02 Score=22.37 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=22.4
Q ss_pred EEEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcc
Q 021976 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115 (304)
Q Consensus 77 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~ 115 (304)
+..|..+.|..|++....+++- ++.+-.+|.-+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~------~i~~~~~d~~k 34 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ------GIDYRFHDYRV 34 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc------CCCcEEeehcc
Confidence 3467789999999987666542 45566666543
No 463
>PF11317 DUF3119: Protein of unknown function (DUF3119); InterPro: IPR021467 This family of proteins has no known function.
Probab=20.86 E-value=1.9e+02 Score=21.20 Aligned_cols=35 Identities=11% Similarity=0.104 Sum_probs=27.9
Q ss_pred ccccEEEEEeCCeEEEEeeCCCCHHHHHHHHHHHh
Q 021976 126 LAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM 160 (304)
Q Consensus 126 ~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (304)
.++|.+++|++.+.++-+.--.+.+++.+-++++.
T Consensus 81 p~~PiL~YFkE~qsiHFlPiiFd~~~L~~~l~~r~ 115 (116)
T PF11317_consen 81 PGFPILFYFKETQSIHFLPIIFDPKQLREQLEERC 115 (116)
T ss_pred CCCCEEEEEecCCcceeeeeecCHHHHHHHHHHhC
Confidence 57999999998777777777788888888877654
No 464
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=20.34 E-value=3.8e+02 Score=20.15 Aligned_cols=101 Identities=23% Similarity=0.228 Sum_probs=51.4
Q ss_pred CcEEc-ChhcHHHHhc-CCCcEEEEEEcCCChhhhh--hHHHHHHHHHHhhCCcEEEEEeCcccHHH---HHhCC---Cc
Q 021976 57 DVVSL-NGKNFSEFMG-KNRNVMVMFYANWCYWSKK--LAPEFAAAAKMLKGEADLVMVDAYLEKDL---AKEYN---IL 126 (304)
Q Consensus 57 ~v~~l-~~~~~~~~~~-~~~~~lv~f~a~wC~~C~~--~~~~~~~~~~~~~~~~~~~~vd~~~~~~~---~~~~~---v~ 126 (304)
...+| |.++.+..+. ....+|| +-.+-|+ |-. .+|........-+..=.++.|=...+.+. ++.|= -.
T Consensus 17 Gf~eL~T~e~Vd~~~~~~~GTtlV-vVNSVCG-CAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~~aR~yf~~~pP 94 (136)
T PF06491_consen 17 GFEELTTAEEVDEALKNKEGTTLV-VVNSVCG-CAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATAKAREYFEPYPP 94 (136)
T ss_dssp T-EE--SHHHHHHHHHH--SEEEE-EEE-SSH-HHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHHHHHHTSTTS--
T ss_pred CccccCCHHHHHHHHhCCCCcEEE-EEecccc-ccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHHHHHHhcCCCCC
Confidence 33443 5677888886 4455555 4456676 543 46665554443222223444444443332 33432 24
Q ss_pred cccEEEEEeCCeEEEEee----CCCCHHHHHHHHHHH
Q 021976 127 AYPTLYLFVAGVRQFQFF----GERTRDVISAWVREK 159 (304)
Q Consensus 127 ~~Pt~~~~~~g~~~~~~~----g~~~~~~l~~~i~~~ 159 (304)
+-|++.+|++|+.+.-.. -.++.+.|.+-|...
T Consensus 95 SSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~a 131 (136)
T PF06491_consen 95 SSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDA 131 (136)
T ss_dssp -SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHH
T ss_pred CCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHH
Confidence 568999999997654332 347778777766654
No 465
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=20.18 E-value=1.9e+02 Score=18.51 Aligned_cols=69 Identities=16% Similarity=0.062 Sum_probs=38.0
Q ss_pred EEEEcCCChhhhhhHHHHHHHHHHhhCCcEEEEEeCcccHHHHHhCCC--ccccEEEEEeCCeEEEEeeCCCCHHHHHHH
Q 021976 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNI--LAYPTLYLFVAGVRQFQFFGERTRDVISAW 155 (304)
Q Consensus 78 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 155 (304)
..++.+.|+.|++.+-.+....- ......+|.........+.+- ..+|++.. +|.. -.....|.++
T Consensus 2 ~Ly~~~~sp~~~~v~~~l~~~gl----~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~--~~~~------l~eS~aI~~y 69 (74)
T cd03058 2 KLLGAWASPFVLRVRIALALKGV----PYEYVEEDLGNKSELLLASNPVHKKIPVLLH--NGKP------ICESLIIVEY 69 (74)
T ss_pred EEEECCCCchHHHHHHHHHHcCC----CCEEEEeCcccCCHHHHHhCCCCCCCCEEEE--CCEE------eehHHHHHHH
Confidence 34567789999987765554332 233444554433233334443 57998853 4522 2344567777
Q ss_pred HHH
Q 021976 156 VRE 158 (304)
Q Consensus 156 i~~ 158 (304)
|.+
T Consensus 70 L~~ 72 (74)
T cd03058 70 IDE 72 (74)
T ss_pred HHh
Confidence 654
Done!