Query 021977
Match_columns 304
No_of_seqs 115 out of 145
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 07:05:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05910 DUF868: Plant protein 100.0 2E-118 5E-123 834.3 31.1 262 35-300 1-274 (274)
2 cd00110 LamG Laminin G domain; 89.1 3.5 7.5E-05 33.4 8.7 81 127-242 45-127 (151)
3 PF05910 DUF868: Plant protein 82.7 7.4 0.00016 37.7 8.6 77 43-126 143-225 (274)
4 PF02210 Laminin_G_2: Laminin 66.9 14 0.00031 28.6 5.1 48 188-242 52-102 (128)
5 smart00282 LamG Laminin G doma 62.0 14 0.0003 29.8 4.3 29 188-223 60-88 (135)
6 PF05506 DUF756: Domain of unk 58.5 23 0.0005 27.6 4.9 20 96-115 46-65 (89)
7 COG0139 HisI Phosphoribosyl-AM 56.8 33 0.00071 29.3 5.7 60 128-202 16-84 (111)
8 PRK00051 hisI phosphoribosyl-A 54.1 45 0.00097 29.0 6.2 59 128-201 12-79 (125)
9 PF06905 FAIM1: Fas apoptotic 53.3 65 0.0014 29.4 7.4 43 189-239 14-58 (177)
10 PF14099 Polysacc_lyase: Polys 51.5 24 0.00052 31.3 4.4 35 188-224 150-184 (224)
11 PF06439 DUF1080: Domain of Un 45.7 44 0.00096 28.2 5.0 34 188-228 125-158 (185)
12 PF05506 DUF756: Domain of unk 38.7 1.1E+02 0.0024 23.7 5.9 35 220-254 35-73 (89)
13 KOG0273 Beta-transducin family 36.6 61 0.0013 34.1 5.1 54 223-282 279-332 (524)
14 TIGR02148 Fibro_Slime fibro-sl 31.5 45 0.00098 27.5 2.7 17 208-224 27-43 (90)
15 COG3427 Carbon monoxide dehydr 28.7 98 0.0021 27.5 4.4 55 178-233 56-111 (146)
16 KOG0289 mRNA splicing factor [ 26.9 57 0.0012 34.0 3.0 47 108-155 369-426 (506)
17 smart00210 TSPN Thrombospondin 24.1 1.1E+02 0.0024 26.9 4.0 36 188-231 115-150 (184)
18 PRK12322 NADH dehydrogenase su 23.1 48 0.0011 33.0 1.7 32 210-241 23-55 (366)
19 PHA00514 dsDNA binding protein 21.9 1.5E+02 0.0033 24.6 4.0 29 133-161 19-54 (98)
20 PRK02759 bifunctional phosphor 21.8 2.8E+02 0.006 26.0 6.2 59 129-202 15-82 (203)
21 PLN02346 histidine biosynthesi 21.8 2.2E+02 0.0048 27.8 5.8 59 129-202 53-120 (271)
22 COG4633 Plastocyanin domain co 21.0 1.3E+02 0.0028 29.1 4.0 27 191-221 82-108 (272)
23 PF03628 PapG_C: PapG chaperon 20.0 85 0.0018 26.7 2.3 28 211-239 55-82 (108)
No 1
>PF05910 DUF868: Plant protein of unknown function (DUF868); InterPro: IPR008586 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=100.00 E-value=2.2e-118 Score=834.34 Aligned_cols=262 Identities=54% Similarity=0.946 Sum_probs=247.2
Q ss_pred CCcceeEEEEEEEEecCCccEEEEEEeecCCCCCceeEEEEcCCC---CcccccccccccceeecCcceeeecCCCcEEE
Q 021977 35 PSVQNAVTCLYRIIFSNKNQLFVTVTWCKNPATGQGLNINFGDDA---SASFKLNTNSGLFRKKKGSRVIESTMPSKIEV 111 (304)
Q Consensus 35 ~s~q~~vT~vY~~~ls~~~~~litvTWsk~~a~~~~L~v~v~~~~---~~~~k~~~kp~~fwkkkGsK~f~~~~~~~v~v 111 (304)
|++||+|||||||+| +|++++||||||||+ |||||+|+|++.. +++||++++||+||||||||+|+++ |++|+|
T Consensus 1 ~s~q~~vT~vY~~~l-~g~~~litvTWsk~~-~g~~Lsv~v~~~~~~~~~~~k~~~~p~~fwkkkGsKsf~~~-~~~v~v 77 (274)
T PF05910_consen 1 PSPQNSVTCVYQTKL-SGKPRLITVTWSKNL-LGQSLSVSVDDASGSSSSSCKVDLKPWLFWKKKGSKSFEVD-GPKVDV 77 (274)
T ss_pred CCCCceEEEEEEEEe-cCCceEEEEEEeCCc-cCCeEEEEEeCccccccccccccCccceeEecCCccccccC-CceEEE
Confidence 578999999999999 789999999999999 9999999999864 5699999999999999999999999 999999
Q ss_pred EecCCccccCCCCCcccccEEEEEECCeEEEEecCCchHHHHhhhcCCCcccceeeEEeeeeecccceEEeeeEEecCCc
Q 021977 112 FWDLSNARYDSGPEPVEGFYVLVMVDSEIGLILGNLNEDIVTKKLKNSSSAAKVSLVSRREHCSGNALYSTKAQFCDTGI 191 (304)
Q Consensus 112 ~WDls~Akf~s~PEP~sgfYVavv~d~EvvLlLGDl~~e~~~kk~~~~~~~~~~~LvsRrEhv~G~~~~~TkarF~e~G~ 191 (304)
|||||+|||+++|||++|||||||+|+||||+||||++|+ +||++++|+..+++||||||||||++.|+|||||+|+|+
T Consensus 78 ~WDLs~Akf~s~PEP~sgfYVavv~d~EvvLllGDl~~ea-~~rt~~~~~~~~~~LvsRrEhv~G~~~~~Tka~F~e~G~ 156 (274)
T PF05910_consen 78 FWDLSSAKFGSGPEPVSGFYVAVVVDGEVVLLLGDLKKEA-YKRTKSRPSPSEAVLVSRREHVFGKKVYSTKARFCEGGK 156 (274)
T ss_pred EeCccccccCCCCCCCCccEEEEEECCEEEEEecCchhHH-HhhccCCCCccceeEEEEEEEEEEEEEEeeEEEEcCCCc
Confidence 9999999999999999999999999999999999999765 799999998889999999999999999999999999999
Q ss_pred eEEEEEEecCCCCCCCCCeeEEEECCEEEEEEEeeeeeecceeeEEeCCeEEEEEEeeeecccc--CCCCcEEEEEEecC
Q 021977 192 AHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDVHDWFFN--PASGYAVFMFRTRS 269 (304)
Q Consensus 192 ~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~VkrL~WkFRGNqti~vdg~~V~V~WDVHdWlF~--~~~g~AVFmFr~~~ 269 (304)
+|||+|||+++.+|++||+|||+||||+|+|||||||||||||||+|||+|||||||||||||+ +++|||||||||++
T Consensus 157 ~HeI~Iec~~~~~g~~dp~l~V~VDgk~v~~VkrL~WkFRGNqti~vdg~~V~V~WDVHdWlF~~~~~~~~AVFmFr~~~ 236 (274)
T PF05910_consen 157 EHEISIECGGETGGPKDPELWVSVDGKKVVQVKRLRWKFRGNQTIFVDGLPVQVFWDVHDWLFNNGPGSGHAVFMFRPRS 236 (274)
T ss_pred EEEEEEEEeccCCCCCCceEEEEECCEEEEEEEEeeecccCceEEEECCeEEEEEEEhhhhhhccCCCCCceEEEEEecC
Confidence 9999999966567889999999999999999999999999999999999999999999999998 67789999999999
Q ss_pred CCCcccchHHHhhhh-------ccCCCceEEEEEeecC
Q 021977 270 GLDSRLWLEEKLMQK-------EQESVEFSLLIYACKS 300 (304)
Q Consensus 270 ~~ds~~w~~~~~~~~-------~~~~~~FsL~l~A~K~ 300 (304)
++|+++|++++..+. .+++.|||||||||||
T Consensus 237 ~~e~~~~~~~~~~~~~~~~~~~~~~~~gFsLllyAwK~ 274 (274)
T PF05910_consen 237 GLESRLWLEESSSSSSSRFSSSSSSGSGFSLLLYAWKN 274 (274)
T ss_pred CccccccccccccccccccccccCCCCCEEEEEEEEcC
Confidence 999999999876432 2467899999999997
No 2
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=89.13 E-value=3.5 Score=33.36 Aligned_cols=81 Identities=16% Similarity=0.229 Sum_probs=54.7
Q ss_pred ccccEEEEEECCeEEEEecCCchHHHHhhhcCCCcccceeeEEeeeeecccceEEeeeEEecCCceEEEEEEecCCCCCC
Q 021977 127 VEGFYVLVMVDSEIGLILGNLNEDIVTKKLKNSSSAAKVSLVSRREHCSGNALYSTKAQFCDTGIAHDILIRCGGENEGL 206 (304)
Q Consensus 127 ~sgfYVavv~d~EvvLlLGDl~~e~~~kk~~~~~~~~~~~LvsRrEhv~G~~~~~TkarF~e~G~~HeI~Iec~~~~~g~ 206 (304)
...|+.+-+.++.+.+.+..... . ..+.+..+. ..|+.|.|.|+...
T Consensus 45 ~~~~~~l~l~~g~l~~~~~~g~~-~--------------------------~~~~~~~~v-~dg~Wh~v~i~~~~----- 91 (151)
T cd00110 45 GGDFLALELEDGRLVLRYDLGSG-S--------------------------LVLSSKTPL-NDGQWHSVSVERNG----- 91 (151)
T ss_pred CCCEEEEEEECCEEEEEEcCCcc-c--------------------------EEEEccCcc-CCCCEEEEEEEECC-----
Confidence 55676666678888888777521 0 011222223 58899999999764
Q ss_pred CCCeeEEEECCEEEEEEEeeee--eecceeeEEeCCeE
Q 021977 207 KHPVLSVCIDKKTVIRVKRLQW--NFRGNQTIFVDGLL 242 (304)
Q Consensus 207 ~~p~l~V~IDgk~v~~VkrL~W--kFRGNqti~vdg~~ 242 (304)
..+.+.|||+.+++...-.. ....+..|+++|.|
T Consensus 92 --~~~~l~VD~~~~~~~~~~~~~~~~~~~~~~~iGg~~ 127 (151)
T cd00110 92 --RSVTLSVDGERVVESGSPGGSALLNLDGPLYLGGLP 127 (151)
T ss_pred --CEEEEEECCccEEeeeCCCCceeecCCCCeEEcCCC
Confidence 35999999997776655444 46777778888875
No 3
>PF05910 DUF868: Plant protein of unknown function (DUF868); InterPro: IPR008586 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=82.70 E-value=7.4 Score=37.71 Aligned_cols=77 Identities=16% Similarity=0.288 Sum_probs=50.5
Q ss_pred EEEEEEe---cCCccEEEEEEeecCCCC---CceeEEEEcCCCCcccccccccccceeecCcceeeecCCCcEEEEecCC
Q 021977 43 CLYRIIF---SNKNQLFVTVTWCKNPAT---GQGLNINFGDDASASFKLNTNSGLFRKKKGSRVIESTMPSKIEVFWDLS 116 (304)
Q Consensus 43 ~vY~~~l---s~~~~~litvTWsk~~a~---~~~L~v~v~~~~~~~~k~~~kp~~fwkkkGsK~f~~~~~~~v~v~WDls 116 (304)
.+|.|+- ..|+..-|.|-=.... - ...|.|.||+-. . +.+| .|=||=||+.++.++ |.+|+|+||+.
T Consensus 143 ~~~~Tka~F~e~G~~HeI~Iec~~~~-~g~~dp~l~V~VDgk~--v--~~Vk-rL~WkFRGNqti~vd-g~~V~V~WDVH 215 (274)
T PF05910_consen 143 KVYSTKARFCEGGKEHEISIECGGET-GGPKDPELWVSVDGKK--V--VQVK-RLRWKFRGNQTIFVD-GLPVQVFWDVH 215 (274)
T ss_pred EEEeeEEEEcCCCcEEEEEEEEeccC-CCCCCceEEEEECCEE--E--EEEE-EeeecccCceEEEEC-CeEEEEEEEhh
Confidence 5666554 2456666666542222 2 235788888621 1 1222 366889999999999 99999999999
Q ss_pred ccccCCCCCc
Q 021977 117 NARYDSGPEP 126 (304)
Q Consensus 117 ~Akf~s~PEP 126 (304)
.==|+++|-+
T Consensus 216 dWlF~~~~~~ 225 (274)
T PF05910_consen 216 DWLFNNGPGS 225 (274)
T ss_pred hhhhccCCCC
Confidence 9888744433
No 4
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=66.92 E-value=14 Score=28.60 Aligned_cols=48 Identities=17% Similarity=0.318 Sum_probs=36.2
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEEEeeeee---ecceeeEEeCCeE
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKRLQWN---FRGNQTIFVDGLL 242 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~VkrL~Wk---FRGNqti~vdg~~ 242 (304)
..|+.|.|.|.... .++.+.||+....+....... +-....++++|.|
T Consensus 52 ~dg~wh~v~i~~~~-------~~~~l~Vd~~~~~~~~~~~~~~~~~~~~~~l~iGg~~ 102 (128)
T PF02210_consen 52 NDGQWHKVSISRDG-------NRVTLTVDGQSVSSESLPSSSSDSLDPDGSLYIGGLP 102 (128)
T ss_dssp TSSSEEEEEEEEET-------TEEEEEETTSEEEEEESSSTTHHCBESEEEEEESSTT
T ss_pred cccceeEEEEEEee-------eeEEEEecCccceEEeccccceecccCCCCEEEeccc
Confidence 58999999999765 349999999999998888775 3334446666654
No 5
>smart00282 LamG Laminin G domain.
Probab=61.98 E-value=14 Score=29.83 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=22.5
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEE
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRV 223 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~V 223 (304)
..|+.|.|.|+..+ ..+.+.|||+.....
T Consensus 60 ~dg~WH~v~i~~~~-------~~~~l~VD~~~~~~~ 88 (135)
T smart00282 60 NDGQWHRVAVERNG-------RRVTLSVDGENPVSG 88 (135)
T ss_pred CCCCEEEEEEEEeC-------CEEEEEECCCccccE
Confidence 57799999999764 248999999765543
No 6
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=58.50 E-value=23 Score=27.63 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=15.4
Q ss_pred cCcceeeecCCCcEEEEecC
Q 021977 96 KGSRVIESTMPSKIEVFWDL 115 (304)
Q Consensus 96 kGsK~f~~~~~~~v~v~WDl 115 (304)
.+..++.+..|..+++.|||
T Consensus 46 ~~~~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 46 GGPWTYTVAAGQTVSLTWPL 65 (89)
T ss_pred CCCEEEEECCCCEEEEEEee
Confidence 34456677668999999999
No 7
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=56.76 E-value=33 Score=29.34 Aligned_cols=60 Identities=25% Similarity=0.506 Sum_probs=39.4
Q ss_pred cccEEEEEECCeE--EEEecCCchHHHHhhhcCCCcccceeeEEeeeeecccceEEeeeEEec----CC---ceEEEEEE
Q 021977 128 EGFYVLVMVDSEI--GLILGNLNEDIVTKKLKNSSSAAKVSLVSRREHCSGNALYSTKAQFCD----TG---IAHDILIR 198 (304)
Q Consensus 128 sgfYVavv~d~Ev--vLlLGDl~~e~~~kk~~~~~~~~~~~LvsRrEhv~G~~~~~TkarF~e----~G---~~HeI~Ie 198 (304)
.|-+.|||-|.+- ||+||=|.+|++.|.++.+ .+...||.- .+.-- .| +.+||.++
T Consensus 16 ~gLvpaIvQd~~t~eVLMlaymN~eAl~kTleTg----~~~y~SRSR-----------~~lW~KGetSG~~q~v~~i~~D 80 (111)
T COG0139 16 DGLVPAIVQDAETGEVLMLAYMNEEALAKTLETG----EAHYYSRSR-----------QELWTKGETSGHTQKVVEIRLD 80 (111)
T ss_pred CCeEEEEEEecCCCcEEEEEecCHHHHHHHHhcC----eEEEEEcch-----------hhheccccccCceEEEEEEEcC
Confidence 7889899987654 7999999988876655432 244444432 22222 22 56889999
Q ss_pred ecCC
Q 021977 199 CGGE 202 (304)
Q Consensus 199 c~~~ 202 (304)
|+++
T Consensus 81 CD~D 84 (111)
T COG0139 81 CDGD 84 (111)
T ss_pred CCCC
Confidence 9863
No 8
>PRK00051 hisI phosphoribosyl-AMP cyclohydrolase; Reviewed
Probab=54.13 E-value=45 Score=29.03 Aligned_cols=59 Identities=22% Similarity=0.470 Sum_probs=37.6
Q ss_pred cccEEEEEEC--CeEEEEecCCchHHHHhhhcCCCcccceeeEEeeeeecccceEEeeeEEecCC-------ceEEEEEE
Q 021977 128 EGFYVLVMVD--SEIGLILGNLNEDIVTKKLKNSSSAAKVSLVSRREHCSGNALYSTKAQFCDTG-------IAHDILIR 198 (304)
Q Consensus 128 sgfYVavv~d--~EvvLlLGDl~~e~~~kk~~~~~~~~~~~LvsRrEhv~G~~~~~TkarF~e~G-------~~HeI~Ie 198 (304)
.|-.-|||-| ..-||+||=|.+|+..+.++.. .+...||. |-+.--+| +..+|.++
T Consensus 12 ~GLipaivqd~~tg~VLMlaymn~eAl~~Tl~tg----~~~y~SRS-----------R~~lW~KGetSG~~q~v~~i~~D 76 (125)
T PRK00051 12 DGLVPAIAQDAETGEVLMVAWMNEEALAKTLETG----RAHYWSRS-----------RQKLWRKGETSGHVQKVHEVRLD 76 (125)
T ss_pred CCcEEEEEEECCCCCEEEEEEcCHHHHHHHHhcC----cEEEEeCc-----------cCcccCCCCCcCCeEEEEEEEec
Confidence 4777788877 5678999999988876555432 24445542 11222233 45688889
Q ss_pred ecC
Q 021977 199 CGG 201 (304)
Q Consensus 199 c~~ 201 (304)
|++
T Consensus 77 CD~ 79 (125)
T PRK00051 77 CDG 79 (125)
T ss_pred CCC
Confidence 986
No 9
>PF06905 FAIM1: Fas apoptotic inhibitory molecule (FAIM1); InterPro: IPR010695 This family consists of several fas apoptotic inhibitory molecule (FAIM) proteins. FAIM expression is upregulated in B cells by anti-Ig treatment that induces Fas-resistance, and overexpression of FAIM diminishes sensitivity to Fas-mediated apoptosis of B and non-B cell lines. FAIM is highly evolutionarily conserved and is widely expressed in murine tissues, suggesting that FAIM plays an important role in cellular physiology [].; GO: 0043066 negative regulation of apoptosis; PDB: 3MX7_A 2KW1_A 2KD2_A.
Probab=53.27 E-value=65 Score=29.36 Aligned_cols=43 Identities=23% Similarity=0.495 Sum_probs=27.3
Q ss_pred CCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEEEeeeeeec--ceeeEEeC
Q 021977 189 TGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKRLQWNFR--GNQTIFVD 239 (304)
Q Consensus 189 ~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~VkrL~WkFR--GNqti~vd 239 (304)
+...|.|.+|=++ .-...-|+||||.+++ | .|.|+ |-++-.|+
T Consensus 14 ~d~~h~IefeHgt-----ttGkrvI~VDGkei~r-~--~wmfklvg~e~F~ig 58 (177)
T PF06905_consen 14 SDGVHKIEFEHGT-----TTGKRVIKVDGKEIVR-R--DWMFKLVGKETFTIG 58 (177)
T ss_dssp TTEEEEEEEEE-T-----TT--EEEEETTEEEEE-E-----S---EEEEEEET
T ss_pred CCCEEEEEEEeCC-----ccCeEEEEECCcEEEE-e--cceeeeCcccEEEEC
Confidence 6789999999543 2345899999998776 3 47766 66666666
No 10
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=51.49 E-value=24 Score=31.34 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=26.7
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEEE
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVK 224 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~Vk 224 (304)
+.|+.|+|+|+..-.. ..+..+.|.+|||.|+..+
T Consensus 150 ~~G~W~~~~i~~~~s~--~~~G~~~vw~nG~~v~~~~ 184 (224)
T PF14099_consen 150 ERGKWHDFVIHVKWSP--DSDGFLEVWLNGKLVVDYK 184 (224)
T ss_dssp -TTSEEEEEEEEEE-C--CCTEEEEEEECCEECCEEE
T ss_pred CCCcEEEEEEEEEECC--CCCEEEEEEECCEEEEEEe
Confidence 5699999999986421 1467899999999888754
No 11
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=45.70 E-value=44 Score=28.22 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=28.0
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEEEeeee
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKRLQW 228 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~VkrL~W 228 (304)
+.|+.|.+.|+|.+ +.+.|.|||+.|+......=
T Consensus 125 ~~~~W~~~~I~~~g-------~~i~v~vnG~~v~~~~d~~~ 158 (185)
T PF06439_consen 125 PPGEWNTVRIVVKG-------NRITVWVNGKPVADFTDPSF 158 (185)
T ss_dssp -TTSEEEEEEEEET-------TEEEEEETTEEEEEEETTSH
T ss_pred CCCceEEEEEEEEC-------CEEEEEECCEEEEEEEcCCC
Confidence 68999999999975 34999999999999876554
No 12
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=38.68 E-value=1.1e+02 Score=23.73 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=25.4
Q ss_pred EEEEEeeeeeecceeeEEeC-CeEEEEEEee---eeccc
Q 021977 220 VIRVKRLQWNFRGNQTIFVD-GLLVDLMWDV---HDWFF 254 (304)
Q Consensus 220 v~~VkrL~WkFRGNqti~vd-g~~V~V~WDV---HdWlF 254 (304)
.++|....=.-.+.+++.|. |..+++.|++ |+|+.
T Consensus 35 ~~~v~~~~y~~~~~~~~~v~ag~~~~~~w~l~~s~gwYD 73 (89)
T PF05506_consen 35 TFTVYDNAYGGGGPWTYTVAAGQTVSLTWPLAASGGWYD 73 (89)
T ss_pred EEEEEeCCcCCCCCEEEEECCCCEEEEEEeecCCCCcEE
Confidence 34444433333567888885 8999999999 99987
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=36.62 E-value=61 Score=34.06 Aligned_cols=54 Identities=22% Similarity=0.427 Sum_probs=36.9
Q ss_pred EEeeeeeecceeeEEeCCeEEEEEEeeeeccccCCCCcEEEEEEecCCCCcccchHHHhh
Q 021977 223 VKRLQWNFRGNQTIFVDGLLVDLMWDVHDWFFNPASGYAVFMFRTRSGLDSRLWLEEKLM 282 (304)
Q Consensus 223 VkrL~WkFRGNqti~vdg~~V~V~WDVHdWlF~~~~g~AVFmFr~~~~~ds~~w~~~~~~ 282 (304)
|-+|+||=+||..+--+-..+-|+||+|- +.-.-.|-|.-..++|- -|..++.+
T Consensus 279 I~slKWnk~G~yilS~~vD~ttilwd~~~-----g~~~q~f~~~s~~~lDV-dW~~~~~F 332 (524)
T KOG0273|consen 279 IFSLKWNKKGTYILSGGVDGTTILWDAHT-----GTVKQQFEFHSAPALDV-DWQSNDEF 332 (524)
T ss_pred eEEEEEcCCCCEEEeccCCccEEEEeccC-----ceEEEeeeeccCCccce-EEecCceE
Confidence 56899999999998876677889999973 33344555555555553 37766543
No 14
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=31.51 E-value=45 Score=27.46 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=14.2
Q ss_pred CCeeEEEECCEEEEEEE
Q 021977 208 HPVLSVCIDKKTVIRVK 224 (304)
Q Consensus 208 ~p~l~V~IDgk~v~~Vk 224 (304)
|+.+||-||||.|+-+=
T Consensus 27 DDDvWVFIn~kLv~DlG 43 (90)
T TIGR02148 27 DDDVWVFINNKLVVDIG 43 (90)
T ss_pred CCeEEEEECCEEEEEcc
Confidence 66799999999988654
No 15
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=28.67 E-value=98 Score=27.51 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=32.6
Q ss_pred ceEEeeeEEec-CCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEEEeeeeeecce
Q 021977 178 ALYSTKAQFCD-TGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKRLQWNFRGN 233 (304)
Q Consensus 178 ~~~~TkarF~e-~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~VkrL~WkFRGN 233 (304)
..|.+|.+|.+ .-..|-|.|..+|+..++ ---..+.|+-+..--=-||.|.+.+|
T Consensus 56 ~~~~g~~~~~~v~~~~~~~~i~g~G~~~~g-~~~~~~~v~l~~~g~gt~v~w~~~~~ 111 (146)
T COG3427 56 GTFSGRVRFVNVDEPPRSITINGSGGGAAG-FADGTVDVQLEPSGEGTRVNWFADAN 111 (146)
T ss_pred EEEEEEEEEccccCCCcEEEEEeecccccc-eeeeeeEEEEEEcCCCcEEEEEEEcc
Confidence 57899999999 889999999887622222 11122222222221125667776665
No 16
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=26.92 E-value=57 Score=34.01 Aligned_cols=47 Identities=23% Similarity=0.438 Sum_probs=31.0
Q ss_pred cEEEEecCCc----cccCCCCCcc-------cccEEEEEECCeEEEEecCCchHHHHhh
Q 021977 108 KIEVFWDLSN----ARYDSGPEPV-------EGFYVLVMVDSEIGLILGNLNEDIVTKK 155 (304)
Q Consensus 108 ~v~v~WDls~----Akf~s~PEP~-------sgfYVavv~d~EvvLlLGDl~~e~~~kk 155 (304)
-+-=+|||++ |||.+-.-|+ .|||+|+-+|.-- ..|=||+|...+|+
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKLKNFKT 426 (506)
T ss_pred ceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhhcccce
Confidence 3444799985 8898544443 6999999995542 33458876544443
No 17
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=24.08 E-value=1.1e+02 Score=26.88 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=27.0
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEEEeeeeeec
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKRLQWNFR 231 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~VkrL~WkFR 231 (304)
..|+.|-|.|...+. .+.+.||++.+-.+. |...+.
T Consensus 115 ~dg~WH~lal~V~~~-------~v~LyvDC~~~~~~~-l~~~~~ 150 (184)
T smart00210 115 ADGQWHKLALSVSGS-------SATLYVDCNEIDSRP-LDRPGQ 150 (184)
T ss_pred ccCCceEEEEEEeCC-------EEEEEECCcccccee-cCCccc
Confidence 488999999988653 488999999876654 665554
No 18
>PRK12322 NADH dehydrogenase subunit D; Provisional
Probab=23.07 E-value=48 Score=33.02 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=28.5
Q ss_pred eeEEEECCEEEEEEE-eeeeeecceeeEEeCCe
Q 021977 210 VLSVCIDKKTVIRVK-RLQWNFRGNQTIFVDGL 241 (304)
Q Consensus 210 ~l~V~IDgk~v~~Vk-rL~WkFRGNqti~vdg~ 241 (304)
++.+.+||++|+.+. ++-..+||=|++.-+..
T Consensus 23 r~~l~~~GE~I~~~e~~~Gy~HRG~Ek~~e~~~ 55 (366)
T PRK12322 23 RLVLKIDGEIIVEATPVIGYLHRGTEKLAESLQ 55 (366)
T ss_pred EEEEEEcCCEEEEEEEecchhhhHHHHHhcCCC
Confidence 677999999999999 99999999999886553
No 19
>PHA00514 dsDNA binding protein
Probab=21.93 E-value=1.5e+02 Score=24.63 Aligned_cols=29 Identities=31% Similarity=0.504 Sum_probs=22.9
Q ss_pred EEEECCeE-------EEEecCCchHHHHhhhcCCCc
Q 021977 133 LVMVDSEI-------GLILGNLNEDIVTKKLKNSSS 161 (304)
Q Consensus 133 avv~d~Ev-------vLlLGDl~~e~~~kk~~~~~~ 161 (304)
...+|+++ .-|||++.-|.+.+++++++.
T Consensus 19 m~mvDGqv~~evl~~~Tl~GNLtiEqAQ~e~~k~~k 54 (98)
T PHA00514 19 MEMVDGQVQIEVLNEQTLLGNLTIEQAQKELSKQYK 54 (98)
T ss_pred eEEecceEEEEEcCcceeecceeHHHHHHHHhhccc
Confidence 45678887 458999999999998887763
No 20
>PRK02759 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; Reviewed
Probab=21.79 E-value=2.8e+02 Score=25.97 Aligned_cols=59 Identities=25% Similarity=0.486 Sum_probs=36.5
Q ss_pred ccEEEEEEC--CeEEEEecCCchHHHHhhhcCCCcccceeeEEeeeeecccceEEeeeEEecCC-------ceEEEEEEe
Q 021977 129 GFYVLVMVD--SEIGLILGNLNEDIVTKKLKNSSSAAKVSLVSRREHCSGNALYSTKAQFCDTG-------IAHDILIRC 199 (304)
Q Consensus 129 gfYVavv~d--~EvvLlLGDl~~e~~~kk~~~~~~~~~~~LvsRrEhv~G~~~~~TkarF~e~G-------~~HeI~Iec 199 (304)
|-.-|||-| .--||+||=|.+|+..+.++.. .+...||. |-+.--+| +..+|.++|
T Consensus 15 gLip~ivqd~~tg~vLml~ymn~eal~~Tl~tg----~~~~~SRS-----------r~~lW~KGetSG~~q~v~~i~~DC 79 (203)
T PRK02759 15 GLIPAIVQDALTGEVLMLGYMNREALEKTLETG----EVTFFSRS-----------KQRLWTKGETSGNTQKVVSIRLDC 79 (203)
T ss_pred CcEEEEEEECCCCCEEEEEecCHHHHHHHHhcC----cEEEEeCC-----------CCcccCCCCCCCCeEEEEEEEecC
Confidence 666678876 4468999999988765544431 24555553 12222233 456888899
Q ss_pred cCC
Q 021977 200 GGE 202 (304)
Q Consensus 200 ~~~ 202 (304)
+++
T Consensus 80 D~D 82 (203)
T PRK02759 80 DND 82 (203)
T ss_pred CCC
Confidence 863
No 21
>PLN02346 histidine biosynthesis bifunctional protein hisIE
Probab=21.78 E-value=2.2e+02 Score=27.77 Aligned_cols=59 Identities=22% Similarity=0.434 Sum_probs=35.2
Q ss_pred ccEEEEEEC--CeEEEEecCCchHHHHhhhcCCCcccceeeEEeeeeecccceEEeeeEEecCC-------ceEEEEEEe
Q 021977 129 GFYVLVMVD--SEIGLILGNLNEDIVTKKLKNSSSAAKVSLVSRREHCSGNALYSTKAQFCDTG-------IAHDILIRC 199 (304)
Q Consensus 129 gfYVavv~d--~EvvLlLGDl~~e~~~kk~~~~~~~~~~~LvsRrEhv~G~~~~~TkarF~e~G-------~~HeI~Iec 199 (304)
|---|||.| ..-||+||=|.+|++.+.+... .+...||.= -+.--+| +.++|.++|
T Consensus 53 gLipaivQd~~tg~VLml~ymn~eal~~Tl~tg----~~~y~SRSR-----------~~LW~KGetSG~~q~v~~i~~DC 117 (271)
T PLN02346 53 GLAVAIAQNVDTGAILMQGFANREAISATISSR----KATFYSRSR-----------SGLWTKGETSGNFINVHDIYLDC 117 (271)
T ss_pred CCEEEEEEECCCCCEEEEEecCHHHHHHHHhcC----cEEEEeCCC-----------CccccCCCCcCCeEEEEEEEecC
Confidence 455455554 5678999999988765554431 244444432 1122233 567888899
Q ss_pred cCC
Q 021977 200 GGE 202 (304)
Q Consensus 200 ~~~ 202 (304)
+++
T Consensus 118 D~D 120 (271)
T PLN02346 118 DRD 120 (271)
T ss_pred CCC
Confidence 863
No 22
>COG4633 Plastocyanin domain containing protein [General function prediction only]
Probab=21.02 E-value=1.3e+02 Score=29.14 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=20.4
Q ss_pred ceEEEEEEecCCCCCCCCCeeEEEECCEEEE
Q 021977 191 IAHDILIRCGGENEGLKHPVLSVCIDKKTVI 221 (304)
Q Consensus 191 ~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~ 221 (304)
.-.||.|+|+++- .|++.+-+||+.+.
T Consensus 82 g~qeIsitv~gGy----~p~~IvV~~~v~~r 108 (272)
T COG4633 82 GIQEISITVDGGY----IPSRIVVVDGVPVR 108 (272)
T ss_pred CceEEEEEEeCCc----cceeEEEecCcceE
Confidence 4468999997644 78888888887763
No 23
>PF03628 PapG_C: PapG chaperone-binding domain ; InterPro: IPR005309 PapG, the adhesin of the P-pili, is situated at the tip and is only a minor component of the whole pilus structure. A two-domain structure has been postulated for PapG; a carbohydrate binding N terminus and chaperone binding C terminus (this domain). The chaperone-binding domain is highly conserved, and is essential for the correct assembly of the pili structure when aided by the chaperone molecule PapD [, ].; PDB: 2WMP_B 3ME0_B.
Probab=20.04 E-value=85 Score=26.75 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=23.4
Q ss_pred eEEEECCEEEEEEEeeeeeecceeeEEeC
Q 021977 211 LSVCIDKKTVIRVKRLQWNFRGNQTIFVD 239 (304)
Q Consensus 211 l~V~IDgk~v~~VkrL~WkFRGNqti~vd 239 (304)
-.|+|||+...+-- |||.=-|+|||.|.
T Consensus 55 siisinG~~~~e~t-l~~~tagskti~ig 82 (108)
T PF03628_consen 55 SIISINGVKQSETT-LRWYTAGSKTITIG 82 (108)
T ss_dssp EEEEETTB-SSEEE-EEESSSEEEEEEEE
T ss_pred EEEEECCccccceE-EEEeecCCceEEee
Confidence 46899998877776 89999999999875
Done!