Query 021977
Match_columns 304
No_of_seqs 115 out of 145
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 12:09:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gne_A Val-1; alginate lyase, 85.3 0.91 3.1E-05 42.0 4.9 56 188-246 161-220 (252)
2 1d2s_A SHBG, sex hormone-bindi 67.0 7.5 0.00026 32.2 5.0 46 188-242 84-129 (170)
3 1f5f_A SHBG, sex hormone-bindi 65.4 9.9 0.00034 32.2 5.6 49 188-243 96-148 (205)
4 1pz7_A Agrin; structural prote 56.2 64 0.0022 27.0 9.0 48 188-242 107-156 (204)
5 2jd4_A Laminin subunit alpha-1 53.5 35 0.0012 31.2 7.5 29 188-223 101-129 (383)
6 3bod_A Neurexin-1-alpha; neure 52.8 12 0.00043 30.9 4.0 49 188-243 89-140 (178)
7 3asi_A Neurexin-1-alpha; beta- 47.9 22 0.00075 33.1 5.2 50 188-243 85-134 (410)
8 3sh4_A LG3 peptide; actin disa 43.0 21 0.00073 29.9 3.9 48 188-242 93-142 (195)
9 3pve_A Agrin, AGRN protein; mR 40.6 26 0.0009 29.2 4.1 46 188-242 94-143 (189)
10 2h0b_A Neurexin-1-alpha; B-san 39.9 41 0.0014 27.5 5.1 48 188-242 87-136 (184)
11 1dyk_A Laminin alpha 2 chain; 39.8 33 0.0011 31.7 5.0 49 188-243 293-343 (394)
12 1h30_A GAS6, growth-arrest-spe 39.3 46 0.0016 31.1 6.0 29 188-223 119-147 (422)
13 4b1m_A Levanase; hydrolase, CB 38.7 37 0.0013 28.6 4.7 31 188-225 129-159 (185)
14 2jd4_A Laminin subunit alpha-1 37.5 43 0.0015 30.5 5.4 49 188-243 281-331 (383)
15 3v64_A Low-density lipoprotein 37.0 29 0.001 29.0 3.8 49 187-242 93-143 (191)
16 3zr5_A Galactocerebrosidase; h 36.5 67 0.0023 33.0 7.0 34 188-228 596-629 (656)
17 2r1b_A Neurexin-1-beta, neurex 34.7 27 0.00093 30.2 3.4 28 188-222 95-122 (220)
18 1p9k_A ORF, hypothetical prote 33.1 18 0.00062 26.5 1.7 30 213-245 48-77 (79)
19 2zzj_A Glucuronan lyase A; bet 31.6 67 0.0023 29.3 5.5 43 180-225 140-182 (238)
20 1dyk_A Laminin alpha 2 chain; 31.1 57 0.0019 30.1 5.1 29 188-223 115-143 (394)
21 3asi_A Neurexin-1-alpha; beta- 29.8 38 0.0013 31.5 3.7 48 188-242 309-359 (410)
22 2r1d_A Neurexin-1-beta, neurex 27.0 48 0.0016 28.9 3.6 48 188-242 123-173 (226)
23 1a78_A Galectin-1; S-lectin, c 25.6 1.2E+02 0.004 24.4 5.5 48 188-245 81-128 (134)
24 2cua_A Protein (CUA); CUA cent 24.5 1.7E+02 0.0058 23.6 6.3 46 211-256 38-87 (135)
25 3mx7_A FAS apoptotic inhibitor 23.9 2.6E+02 0.009 21.9 7.7 32 186-222 10-41 (90)
26 1zps_A PRA-CH, phosphoribosyl- 23.4 69 0.0024 27.1 3.7 59 128-201 21-88 (138)
27 2r16_A Neurexin-1-alpha; beta- 22.6 74 0.0025 26.3 3.8 29 188-223 85-113 (182)
28 2k54_A Protein ATU0742; protei 22.1 2.2E+02 0.0075 20.9 6.2 15 239-253 103-119 (123)
29 4azz_A Levanase; hydrolase; 1. 26.0 21 0.00072 29.1 0.0 31 188-225 108-138 (172)
No 1
>3gne_A Val-1; alginate lyase, polysaccharide lyase family 14, chlorella VI lyase; HET: FLC; 1.20A {Chlorella virus} PDB: 3a0n_A* 3im0_A*
Probab=85.30 E-value=0.91 Score=42.02 Aligned_cols=56 Identities=13% Similarity=0.166 Sum_probs=44.0
Q ss_pred cCCceEEEEEEecCCCC----CCCCCeeEEEECCEEEEEEEeeeeeecceeeEEeCCeEEEEE
Q 021977 188 DTGIAHDILIRCGGENE----GLKHPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLM 246 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~----g~~~p~l~V~IDgk~v~~VkrL~WkFRGNqti~vdg~~V~V~ 246 (304)
..|+.+.|.+.+..... |..|.++.|.|||+.|+ ...|+|. .+..+.|+|+..+.|
T Consensus 161 ~~G~W~~V~q~VkLNT~~~G~g~aDG~v~v~VNG~~v~-~~~i~~r--~~~~~~I~gi~fsTF 220 (252)
T 3gne_A 161 KYDVWNRIEIGTKMNTFKNGIPQLDGESYVIVNGKKEV-LKRINWS--RSPDLLISRFDWNTF 220 (252)
T ss_dssp CBTSCEEEEEEEECCCEETTEECSCEEEEEEETTEEEE-EEEECCC--SSTTCCEEEEEEEEE
T ss_pred cCCceEEEEEEEEcCCCCCCCccCCceEEEEECCEEEE-ECCEEEE--ecCCccEeEEEEEEE
Confidence 68999999998875433 45688999999999997 7888876 566677788777665
No 2
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A*
Probab=66.98 E-value=7.5 Score=32.23 Aligned_cols=46 Identities=24% Similarity=0.406 Sum_probs=33.4
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEEEeeeeeecceeeEEeCCeE
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLL 242 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~VkrL~WkFRGNqti~vdg~~ 242 (304)
..|+.|.|.|+-.+ ..+.+.|||+.+..+..+.- .- ...++|+|.|
T Consensus 84 nDG~WH~V~v~~~~-------~~~~L~VD~~~~~~~~~~~~-l~-~~~lylGG~p 129 (170)
T 1d2s_A 84 DDGRWHQVEVKMEG-------DSVLLEVDGEEVLRLRQVSG-HP-IMRIALGGLL 129 (170)
T ss_dssp CSSSCEEEEEEEET-------TEEEEEETTEEEEEETTCCC-CC-EEEEEESSCS
T ss_pred CCCCCEEEEEEEeC-------CEEEEEECCeeeeeeccCCC-cc-cccEEEECcc
Confidence 58899999998754 35999999999887665421 00 2457888876
No 3
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Probab=65.39 E-value=9.9 Score=32.23 Aligned_cols=49 Identities=24% Similarity=0.388 Sum_probs=34.3
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEEEeee-e--eecc-eeeEEeCCeEE
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKRLQ-W--NFRG-NQTIFVDGLLV 243 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~VkrL~-W--kFRG-Nqti~vdg~~V 243 (304)
..|+.|.|.|+-.+ ..+.+.|||..+..+.++. - +.-. +..++|+|+|.
T Consensus 96 nDG~WH~V~v~r~~-------~~~~L~VD~~~~~~~~~~~~~~~~~~~~~~~lyiGG~p~ 148 (205)
T 1f5f_A 96 DDGRWHQVEVKMEG-------DSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLF 148 (205)
T ss_dssp CSSSCEEEEEEEET-------TEEEEEETTEEEEEECSCCCCC----CCEEEEEESSCSS
T ss_pred CCCCCEEEEEEEeC-------CEEEEEECCeeeeeeeccCCCcccccCCCceEEEeCccC
Confidence 58899999998754 3599999999988775431 1 1122 34688999873
No 4
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A
Probab=56.16 E-value=64 Score=27.03 Aligned_cols=48 Identities=10% Similarity=0.032 Sum_probs=30.2
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEEEee--eeeecceeeEEeCCeE
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKRL--QWNFRGNQTIFVDGLL 242 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~VkrL--~WkFRGNqti~vdg~~ 242 (304)
..|+.|.|.|+-.+. .+.+.||+.......-. .-.+--+..++|+|.|
T Consensus 107 nDg~WH~V~v~r~~~-------~~~L~VD~~~~~~~~~~~~~~~l~~~~~lylGG~p 156 (204)
T 1pz7_A 107 NTNHWTHIKAYRVQR-------EGSLQVGNEAPITGSSPLGATQLDTDGALWLGGME 156 (204)
T ss_dssp CSSSCEEEEEEEETT-------EEEEEETTSCCEEEECCSSCCCEEECCEEEESSCS
T ss_pred CCCCeEEEEEEEeCC-------EEEEEECCcceEEEECCCCCceEcCCCCEEEecCC
Confidence 578999999987542 48899999875543311 0111124457777765
No 5
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}
Probab=53.46 E-value=35 Score=31.16 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=20.8
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEE
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRV 223 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~V 223 (304)
..|+.|.|.|+-.+. .+.+.|||+.....
T Consensus 101 ~Dg~WH~V~v~r~~~-------~~~L~VD~~~~~~~ 129 (383)
T 2jd4_A 101 SDGKWHTVKTEYIKR-------KAFMTVDGQESPSV 129 (383)
T ss_dssp TTSSCEEEEEEEETT-------EEEEEETTEECCCE
T ss_pred cCCCcEEEEEEEeCC-------EEEEEEcCccccce
Confidence 588899999886542 37788888765543
No 6
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Probab=52.81 E-value=12 Score=30.95 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=33.4
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEEEeeeee---ecceeeEEeCCeEE
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKRLQWN---FRGNQTIFVDGLLV 243 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~VkrL~Wk---FRGNqti~vdg~~V 243 (304)
..|+.|.|.|+-.+ ..+.+.||+..........=. +--+..|+|+|.|.
T Consensus 89 nDg~WH~V~v~r~~-------~~~~L~VD~~~~~~~~~~~~~~~~l~~~~~lylGG~p~ 140 (178)
T 3bod_A 89 NDGKYHVVRFTRSG-------GNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ 140 (178)
T ss_dssp CSSSCEEEEEEEET-------TEEEEEETTSCCEEECCCSCCCCCBCCEEEEEESCCTT
T ss_pred cCCCeEEEEEEEeC-------CEEEEEEeCCceeeeecCCCcceEEeCCCcEEEecccC
Confidence 58899999998754 358999999876554322111 33345688998874
No 7
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=47.85 E-value=22 Score=33.10 Aligned_cols=50 Identities=18% Similarity=0.303 Sum_probs=31.0
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEEEeeeeeecceeeEEeCCeEE
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLV 243 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~VkrL~WkFRGNqti~vdg~~V 243 (304)
..|+.|.|.|+-...+ .+.+.||++.+.++..-.-.+.-+..++|+|.|-
T Consensus 85 nDg~WH~V~v~r~~~~------~~~l~VD~~~~~~~~~~~~~l~~~~~lyvGG~p~ 134 (410)
T 3asi_A 85 NDNQWHNVMISRDTSN------LHTVKIDTKITTQITAGARNLDLKSDLYIGGVAK 134 (410)
T ss_dssp CSSSCEEEEEEECTTC------EEEEEETTEEEEEECTTCCCCCBCSCEEESCCCG
T ss_pred CCCCeEEEEEEEcCCc------eEEEEECCEeceeccCCccceecCCceEECcccc
Confidence 4799999999875421 3789999998776521111122233566666653
No 8
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Probab=43.03 E-value=21 Score=29.94 Aligned_cols=48 Identities=13% Similarity=0.199 Sum_probs=31.7
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEEEeee--eeecceeeEEeCCeE
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKRLQ--WNFRGNQTIFVDGLL 242 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~VkrL~--WkFRGNqti~vdg~~ 242 (304)
..|+.|.|.|+-.+ ..+.+.|||.......--. -.+.=+..|+|.|.|
T Consensus 93 ~Dg~WH~V~v~r~~-------~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lyvGG~p 142 (195)
T 3sh4_A 93 NDGEWHRVTALREG-------RRGSIQVDGEELVSGRSPGPNVAVNAKGSVYIGGAP 142 (195)
T ss_dssp CSSSCEEEEEEEET-------TEEEEEETTCCCEEEECCSSCCCCCCCSCEEESCCT
T ss_pred CCCCeEEEEEEEeC-------CEEEEEECCeeeeeeeCCCCcccccCCCCEEECCCC
Confidence 57899999998754 2489999998765443110 111223458888876
No 9
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus}
Probab=40.64 E-value=26 Score=29.16 Aligned_cols=46 Identities=11% Similarity=0.171 Sum_probs=30.4
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEEEee----eeeecceeeEEeCCeE
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKRL----QWNFRGNQTIFVDGLL 242 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~VkrL----~WkFRGNqti~vdg~~ 242 (304)
..|+.|.|.|+-.+ ..+.+.|||.......-- ..+. +..++|.|.|
T Consensus 94 ~Dg~WH~V~v~r~~-------~~~~L~VD~~~~~~~~~~~~~~~l~~--~~~lyvGG~p 143 (189)
T 3pve_A 94 ALGTWVRVFLERNG-------RKGALQVGDGPRVLGESPVPHTMLNL--KEPLYVGGAP 143 (189)
T ss_dssp CTTSEEEEEEEEET-------TEEEEEETTSCCEEEECCSSCCCCCC--CSCEEESCCS
T ss_pred CCCCEEEEEEEEeC-------CEEEEEECCceeEeEEcCCCcceecC--CCCEEECCcC
Confidence 47899999998654 348999999865443211 1122 3458888876
No 10
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Probab=39.87 E-value=41 Score=27.54 Aligned_cols=48 Identities=10% Similarity=0.180 Sum_probs=29.9
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEEEee-eee-ecceeeEEeCCeE
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKRL-QWN-FRGNQTIFVDGLL 242 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~VkrL-~Wk-FRGNqti~vdg~~ 242 (304)
..|+.|.|.|+-.+ ..+.+.|||.......-- ... .--+..++|.|.|
T Consensus 87 ~Dg~WH~V~v~r~~-------~~~~L~VD~~~~~~~~~~~~~~~l~~~~~l~lGG~p 136 (184)
T 2h0b_A 87 NDNAWHDVKVTRNL-------RQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSP 136 (184)
T ss_dssp SSSSCEEEEEEEET-------TEEEEEETTTEEEEEECSTTCCCEEECSEEEESCCT
T ss_pred CCCCeEEEEEEEeC-------CEEEEEEcCceeeeeECCCCceeccCCCCEEECCCC
Confidence 57899999998654 248999999876543210 011 0113357777765
No 11
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Probab=39.83 E-value=33 Score=31.71 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=32.5
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEEEee--eeeecceeeEEeCCeEE
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKRL--QWNFRGNQTIFVDGLLV 243 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~VkrL--~WkFRGNqti~vdg~~V 243 (304)
..|+.|.|.|.-.+ ..+.+.|||..+...... ...+.-+..++|+|.|-
T Consensus 293 ~DG~WH~V~v~~~~-------~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lylGG~p~ 343 (394)
T 1dyk_A 293 CNGQWHKVTAKKIK-------NRLELVVDGNQVDAQSPNSASTSADTNDPVFVGGFPG 343 (394)
T ss_dssp TSSSCEEEEEEEET-------TEEEEEETTEEEEEECCCTTCCCBCCCBCCEESCCCT
T ss_pred cCCceEEEEEEEeC-------CEEEEEECCcccccccCCCcceecccCCCEEEcCCCc
Confidence 56899999998654 248999999876543221 22344455688888764
No 12
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*
Probab=39.34 E-value=46 Score=31.14 Aligned_cols=29 Identities=14% Similarity=0.324 Sum_probs=23.6
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEE
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRV 223 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~V 223 (304)
..|+.|.|.|+-.+ ..+.++||+..+...
T Consensus 119 nDg~WH~V~v~r~~-------~~~~L~VD~~~~~~~ 147 (422)
T 1h30_A 119 NHGMWQTISVEELA-------RNLVIKVNRDAVMKI 147 (422)
T ss_dssp CSSCCEEEEEEECS-------SEEEEEETTEEEEEE
T ss_pred cCCCCEEEEEEEcC-------CEEEEEECCeeeEEe
Confidence 57899999998754 249999999987765
No 13
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A
Probab=38.67 E-value=37 Score=28.59 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=26.2
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEEEe
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKR 225 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~Vkr 225 (304)
+.|+.|.|.|++.+ ..+.+.|||+.++.+.-
T Consensus 129 ~~g~w~~l~I~~~G-------~~i~~~vnG~~v~~~~D 159 (185)
T 4b1m_A 129 DVNKKYHLKTEAEG-------DRFKIYLDDRLVIDAHD 159 (185)
T ss_dssp CSSCCEEEEEEEET-------TEEEEEETTEEEEEEEC
T ss_pred CCCCeEEEEEEEEC-------CEEEEEECCEEEEEEEC
Confidence 46899999999975 35999999999998764
No 14
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}
Probab=37.54 E-value=43 Score=30.54 Aligned_cols=49 Identities=16% Similarity=0.162 Sum_probs=31.0
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEEEe-eee-eecceeeEEeCCeEE
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKR-LQW-NFRGNQTIFVDGLLV 243 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~Vkr-L~W-kFRGNqti~vdg~~V 243 (304)
..|+.|.|.|+-.+ ..+.+.|||..+..... .+. .+.-+..++|+|.|.
T Consensus 281 ~DG~WH~V~l~~~~-------~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lylGG~p~ 331 (383)
T 2jd4_A 281 CDGKWHTLQAHKSK-------HRIVLTVDGNSVRAESPHTHSTSADTNDPIYVGGYPA 331 (383)
T ss_dssp GSSSCEEEEEEEET-------TEEEEEETTEEEEEC----CCCCBCCCEEEEESCCCT
T ss_pred cCCCcEEEEEEEcC-------CEEEEEECCeecccccCCCCcccccCCCCEEEecccc
Confidence 57899999998654 24889999987654221 111 233345688888763
No 15
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A
Probab=36.96 E-value=29 Score=28.99 Aligned_cols=49 Identities=10% Similarity=0.046 Sum_probs=30.3
Q ss_pred ecCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEEEee--eeeecceeeEEeCCeE
Q 021977 187 CDTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKRL--QWNFRGNQTIFVDGLL 242 (304)
Q Consensus 187 ~e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~VkrL--~WkFRGNqti~vdg~~ 242 (304)
-..|+.|.|.|+-.+ ..+.+.|||.......-- .-.+.-+..|+|+|.|
T Consensus 93 v~Dg~WH~V~v~r~~-------~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lylGG~p 143 (191)
T 3v64_A 93 VNTNRWLRIRAHREH-------REGSLQVGNEAPVTGSSPLGATQLDTDGALWLGGLQ 143 (191)
T ss_dssp CTTSSCEEEEEEEET-------TEEEEEETTSCCEEEECCTTCCCEEECSEEEESCCS
T ss_pred ccCCCCEEEEEEEeC-------CEEEEEECCeeeEeEECCCCcceeccCCceEEcccC
Confidence 367999999998654 358999999865443210 1111223456777765
No 16
>3zr5_A Galactocerebrosidase; hydrolase, GALC, glycosyl hydrolase, krabbe disease, TIM BAR lectin domain; HET: NAG; 2.10A {Mus musculus} PDB: 3zr6_A*
Probab=36.46 E-value=67 Score=33.01 Aligned_cols=34 Identities=6% Similarity=0.027 Sum_probs=28.6
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEEEeeee
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKRLQW 228 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~VkrL~W 228 (304)
+.++.|.+.|++.+. .+.+.+||+.++.+.--..
T Consensus 596 ~~~~w~~L~l~~~G~-------~i~~~ldG~~v~~~~D~~~ 629 (656)
T 3zr5_A 596 TAKRWYTLTLGIKGY-------FAFGMLNGTILWKNVRVKY 629 (656)
T ss_dssp CTTCEEEEEEEEETT-------EEEEEETTEEEEEEEECCS
T ss_pred CCCceEEEEEEEECC-------EEEEEECCEEEEEEecCCC
Confidence 688999999999763 4999999999988776654
No 17
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A*
Probab=34.72 E-value=27 Score=30.17 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=22.6
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEE
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIR 222 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~ 222 (304)
..|+.|.|.|+-.+ ..+.+.||+..+.+
T Consensus 95 nDG~WH~V~v~r~~-------~~~~L~VD~~~~~~ 122 (220)
T 2r1b_A 95 NDGKYHVVRFTRSG-------GNATLQVDSWPVIE 122 (220)
T ss_dssp CSSSCEEEEEEEET-------TEEEEEETTSCCEE
T ss_pred cCCceEEEEEEEeC-------CEEEEEECCcceee
Confidence 58999999998754 34899999997654
No 18
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=33.09 E-value=18 Score=26.52 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=16.6
Q ss_pred EEECCEEEEEEEeeeeeecceeeEEeCCeEEEE
Q 021977 213 VCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDL 245 (304)
Q Consensus 213 V~IDgk~v~~VkrL~WkFRGNqti~vdg~~V~V 245 (304)
|+|||+.+ +...-+...++.|.|+|.++++
T Consensus 48 V~VNG~~v---~~~~~~v~~gd~I~v~~~~~~~ 77 (79)
T 1p9k_A 48 VKVDGAVE---TRKRCKIVAGQTVSFAGHSVQV 77 (79)
T ss_dssp HEETTBCC---CCSSCCCCSSEEEEETTEEEEE
T ss_pred EEECCEEe---cCCCCCCCCCCEEEECCEEEEE
Confidence 55666553 2333444555666677766654
No 19
>2zzj_A Glucuronan lyase A; beta-jelly roll; HET: CIT; 1.80A {Trichoderma reesei}
Probab=31.58 E-value=67 Score=29.34 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=31.0
Q ss_pred EEeeeEEecCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEEEe
Q 021977 180 YSTKAQFCDTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKR 225 (304)
Q Consensus 180 ~~TkarF~e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~Vkr 225 (304)
|...+.. ..|+.|+|+|...=... ++.-+.|-+||++|+.-+.
T Consensus 140 ~~~l~~v-~~G~Wh~iVihvkWs~d--~~Gf~~vW~dG~~v~~~~g 182 (238)
T 2zzj_A 140 RPNLATV-SAGAWHRVVLQIKWASD--NTGYFKIWFDGAKVHEEYN 182 (238)
T ss_dssp EEEEEEC-CTTSCEEEEEEEEECSS--TTEEEEEEETTEEEEEEEE
T ss_pred ccccccc-cCCceEEEEEEEEEeCC--CCcEEEEEECCEEEEeecC
Confidence 4344443 69999999998753111 3668999999999998654
No 20
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Probab=31.14 E-value=57 Score=30.08 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=22.6
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEE
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRV 223 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~V 223 (304)
..|+.|.|.|+-.. ..+.+.|||+.+...
T Consensus 115 ~Dg~WH~V~v~r~~-------~~~~L~VD~~~~~~~ 143 (394)
T 1dyk_A 115 NDGQWHKIKIVRVK-------QEGILYVDDASSQTI 143 (394)
T ss_dssp CSSSCEEEEEEEET-------TEEEEEETTEEEEEE
T ss_pred CCCCEEEEEEEEeC-------CEEEEEEcCccccee
Confidence 58999999998754 248889999887654
No 21
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=29.84 E-value=38 Score=31.47 Aligned_cols=48 Identities=23% Similarity=0.274 Sum_probs=32.4
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEEEee--eee-ecceeeEEeCCeE
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKRL--QWN-FRGNQTIFVDGLL 242 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~VkrL--~Wk-FRGNqti~vdg~~ 242 (304)
..|+.|.|.|+-.+ ..+.+.||+..+....-- +.+ |..+..|+|+|.|
T Consensus 309 ~DG~wH~V~v~r~~-------~~~~L~VD~~~~~~~~~~g~~~~~~~~~~~lylGG~p 359 (410)
T 3asi_A 309 NDGKYHVVRFTRSG-------GNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKE 359 (410)
T ss_dssp CSSSCEEEEEEEET-------TEEEEEETTSCCEEECCSSCCCCCBCCEEEEEESSTT
T ss_pred CCCCeEEEEEEEEC-------CEEEEEECCcceecccCCCccceeeeccceEEECCcc
Confidence 56899999998653 248999999876554211 122 4556778888875
No 22
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E*
Probab=27.04 E-value=48 Score=28.91 Aligned_cols=48 Identities=21% Similarity=0.206 Sum_probs=31.8
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEEEeee---eeecceeeEEeCCeE
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKRLQ---WNFRGNQTIFVDGLL 242 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~VkrL~---WkFRGNqti~vdg~~ 242 (304)
..|+.|.|.|+-.+ ..+.++||+..+..-.... -.+.-+..|+|+|+|
T Consensus 123 nDG~WH~V~v~r~~-------~~~~L~VD~~~~~~~~~~~~~~~~l~~~~~lylGG~p 173 (226)
T 2r1d_A 123 NDGKYHVVRFTRSG-------GNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKE 173 (226)
T ss_dssp CSSSCEEEEEEEET-------TEEEEEETTSCCEEECCSSCCCCCBCSEEEEEESSTT
T ss_pred cCCCCEEEEEEEeC-------CEEEEEEcCccceEEecCCCcceeccCCCeEEEcccc
Confidence 58999999998754 3489999998644321111 112334568899987
No 23
>1a78_A Galectin-1; S-lectin, carbohydrate binding, complex (lectin/saccharide); HET: TDG; 2.00A {Bufo arenarum} SCOP: b.29.1.3 PDB: 1gan_A*
Probab=25.60 E-value=1.2e+02 Score=24.40 Aligned_cols=48 Identities=4% Similarity=0.050 Sum_probs=34.7
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEEEeeeeeecceeeEEeCCeEEEE
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDL 245 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~VkrL~WkFRGNqti~vdg~~V~V 245 (304)
..|+.-+|.|.|.. ....|.|||+...+-+.-. ....=.+|.|+| |++
T Consensus 81 ~~G~~F~l~i~~~~-------~~f~V~Vng~~~~~F~hR~-~~~~i~~l~I~G--v~l 128 (134)
T 1a78_A 81 QQGAEVMVCFEYQT-------QKIIIKFSSGDQFSFPVRK-VLPSIPFLSLEG--LAF 128 (134)
T ss_dssp CTTSEEEEEEEECS-------SEEEEEETTSCEEEEECSS-CCSSEEEEEEES--SEE
T ss_pred cCCCcEEEEEEEcC-------CEEEEEECCEEEEEecCCC-CHhhCCEEEEEe--EEE
Confidence 47888999999964 3599999999887765332 344456677888 554
No 24
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=24.52 E-value=1.7e+02 Score=23.63 Aligned_cols=46 Identities=13% Similarity=0.183 Sum_probs=33.4
Q ss_pred eEEEECCEEEEEEEeeeeeecceeeEEeCCeEEEEEE---ee-eeccccC
Q 021977 211 LSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMW---DV-HDWFFNP 256 (304)
Q Consensus 211 l~V~IDgk~v~~VkrL~WkFRGNqti~vdg~~V~V~W---DV-HdWlF~~ 256 (304)
+.-..++...++|.--+|+|.=|+.+.=-|.+|.+.. || |+|....
T Consensus 38 ~~~~~~~~~~V~v~~~~~~f~P~~l~Vp~G~~V~~~vts~DV~Hsf~ip~ 87 (135)
T 2cua_A 38 VVQTGPNQYTVYVLAFAFGYQPNPIEVPQGAEIVFKITSPDVIHGFHVEG 87 (135)
T ss_dssp EEEEETTEEEEEEEEETTEEESSSEEEETTSEEEEEEEBSSSCEEEEETT
T ss_pred cccCCCCCEEEEEEEEeCEEECCEEEEcCCCEEEEEEEeCCccceEEecC
Confidence 4445566666777767899988776555699999988 54 9988754
No 25
>3mx7_A FAS apoptotic inhibitory molecule 1; beta sheet, apoptosis; 1.76A {Homo sapiens}
Probab=23.92 E-value=2.6e+02 Score=21.87 Aligned_cols=32 Identities=25% Similarity=0.210 Sum_probs=22.7
Q ss_pred EecCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEE
Q 021977 186 FCDTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIR 222 (304)
Q Consensus 186 F~e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~ 222 (304)
...++..|.|..|=.+ ....=-|.|||+.+++
T Consensus 10 Vpl~~~~HkieFeHgt-----ttGkrvi~VDGkev~r 41 (90)
T 3mx7_A 10 VALSDGVHKIEFEHGT-----TSGKRVVYVDGKEEIR 41 (90)
T ss_dssp EEETTEEEEEEEEECT-----TTCCEEEEETTEEEEE
T ss_pred ecCCCCcEEEEEEecc-----ccceEEEEECCEEEEe
Confidence 3458899999998443 2345779999996654
No 26
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=23.44 E-value=69 Score=27.11 Aligned_cols=59 Identities=20% Similarity=0.404 Sum_probs=37.2
Q ss_pred cccEEEEEECC--eEEEEecCCchHHHHhhhcCCCcccceeeEEeeeeecccceEEeeeEEecCC-------ceEEEEEE
Q 021977 128 EGFYVLVMVDS--EIGLILGNLNEDIVTKKLKNSSSAAKVSLVSRREHCSGNALYSTKAQFCDTG-------IAHDILIR 198 (304)
Q Consensus 128 sgfYVavv~d~--EvvLlLGDl~~e~~~kk~~~~~~~~~~~LvsRrEhv~G~~~~~TkarF~e~G-------~~HeI~Ie 198 (304)
.|-.-|||-|. --||+||=|.+|++.+.++.. .+...||. |-++--+| +.++|.++
T Consensus 21 ~GLipaIvQd~~tg~VLMlayMN~EAl~~Tl~tg----~~~y~SRS-----------R~~LW~KGetSG~~Q~v~~i~~D 85 (138)
T 1zps_A 21 EDLIIAVAQDHETGEVLMVAYMNREALRRTLETG----TAHYWSTS-----------RGKLWLKGESSGHVQRVKDVLVD 85 (138)
T ss_dssp CCCEEEEEEETTTCCEEEEEEECHHHHHHHHHHS----BCEEEETT-----------TTEEEETTTTTSCCEEEEEEEEC
T ss_pred CCcEEEEEEECCCCCEEEEEecCHHHHHHHHhcC----cEEEEcCC-----------CCccccCccCCCCcEEEEEEEec
Confidence 57888888873 568999999988876655431 24444442 22222222 56788888
Q ss_pred ecC
Q 021977 199 CGG 201 (304)
Q Consensus 199 c~~ 201 (304)
|++
T Consensus 86 CD~ 88 (138)
T 1zps_A 86 CDG 88 (138)
T ss_dssp TTS
T ss_pred CCC
Confidence 876
No 27
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus}
Probab=22.64 E-value=74 Score=26.25 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=23.4
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEE
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRV 223 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~V 223 (304)
..|+.|.|.|+-.+ ..+.+.||+..+.+.
T Consensus 85 nDg~WH~V~v~r~~-------~~~~L~VD~~~~~~~ 113 (182)
T 2r16_A 85 NDNEWHTVRVVRRG-------KSLKLTVDDQQAMTG 113 (182)
T ss_dssp CSSSCEEEEEEEET-------TEEEEEETTCCEEEE
T ss_pred CCCCeEEEEEEEEC-------CEEEEEECCceeEeE
Confidence 58899999998764 249999999987654
No 28
>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29
Probab=22.08 E-value=2.2e+02 Score=20.93 Aligned_cols=15 Identities=7% Similarity=-0.146 Sum_probs=9.9
Q ss_pred CCe--EEEEEEeeeecc
Q 021977 239 DGL--LVDLMWDVHDWF 253 (304)
Q Consensus 239 dg~--~V~V~WDVHdWl 253 (304)
||. .+..+||..+|+
T Consensus 103 dGkI~~~~~~~d~~~~~ 119 (123)
T 2k54_A 103 NGRIAKAWFKIGEPRIV 119 (123)
T ss_dssp TTEEEEEEEEEEEEECG
T ss_pred CCEEEEEEEEcCChhhh
Confidence 563 456777777776
No 29
>4azz_A Levanase; hydrolase; 1.70A {Bacillus subtilis}
Probab=25.96 E-value=21 Score=29.14 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=25.3
Q ss_pred cCCceEEEEEEecCCCCCCCCCeeEEEECCEEEEEEEe
Q 021977 188 DTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKR 225 (304)
Q Consensus 188 e~G~~HeI~Iec~~~~~g~~~p~l~V~IDgk~v~~Vkr 225 (304)
+.|+.|.|-|++.+. .+.+.|||+.++.+.-
T Consensus 108 ~~g~w~~l~I~~~G~-------~i~~~vnG~~v~~~~D 138 (172)
T 4azz_A 108 DVNKKYHLKTEAEGD-------RFKIYLDDRLVIDAHD 138 (172)
Confidence 478999999998763 4889999998887653
Done!