BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021980
(304 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 27 GEGSPVVLIHGFG--ASAF-HWRYNIPELAKRYKVYAVDLLGFGWSEK-AIIEYDAMVWK 82
GEG PV+LIHG G SA+ +WR IP L+K Y+V A D++GFG++++ Y W
Sbjct: 23 GEGQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPENYNYSKDSWV 82
Query: 83 DQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSAGQFGDGRKGSNQS 142
D I+ + + E A +VGN+ ++V + L+ +AG D +G N
Sbjct: 83 DHIIGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAV 142
Query: 143 EESTLQKVFLKPLKEIF 159
T ++ L +IF
Sbjct: 143 WGYTPSIENMRNLLDIF 159
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 4/137 (2%)
Query: 27 GEGSPVVLIHGFG--ASAF-HWRYNIPELAKRYKVYAVDLLGFGWSEK-AIIEYDAMVWK 82
GEG PV+LIHG G SA+ +WR IP L+K Y+V A D++GFG++++ Y W
Sbjct: 23 GEGQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPENYNYSKDSWV 82
Query: 83 DQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSAGQFGDGRKGSNQS 142
D I+ + + E A +VGNS ++V + L+ + G D +G N
Sbjct: 83 DHIIGIMDALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLMGAVGTRFDVTEGLNAV 142
Query: 143 EESTLQKVFLKPLKEIF 159
T ++ L +IF
Sbjct: 143 WGYTPSIENMRNLLDIF 159
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 18 GHKIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKR-YKVYAVDLLGFGWSEKA--II 74
G ++H+V G G + L HGF S F WRY IP LA+ ++V A+D+ G+G S I
Sbjct: 245 GIRLHFVEMGSGPALCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSSPPEIE 304
Query: 75 EYDAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNS 128
EY + ++V FL ++ AV +G+ P++V VA LN+
Sbjct: 305 EYAMELLCKEMVTFLDKLGIPQAVFIGHDWAGVMVWNMALFYPERVRAVASLNT 358
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 20 KIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKR-YKVYAVDLLGFGWSEKA--IIEY 76
++H+V G G V L HGF S + WRY IP LA+ Y+V A+D+ G+G S I EY
Sbjct: 45 RLHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEY 104
Query: 77 DAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNS 128
V ++V FL ++ AV +G+ P++V VA LN+
Sbjct: 105 CMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNT 156
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 20 KIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKR-YKVYAVDLLGFGWSEKA--IIEY 76
++H+V G G V L HGF S + WRY IP LA+ Y+V A+D+ G+G S I EY
Sbjct: 30 RLHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEY 89
Query: 77 DAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNS 128
V ++V FL ++ AV +G+ P++V VA LN+
Sbjct: 90 CMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNT 141
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 20 KIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKR-YKVYAVDLLGFGWSEKA--IIEY 76
++H+V G G V L HGF S + WRY IP LA+ Y+V A+D+ G+G S I EY
Sbjct: 249 RLHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEY 308
Query: 77 DAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNS 128
V ++V FL ++ AV +G+ P++V VA LN+
Sbjct: 309 CMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNT 360
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 18 GHKIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIEYD 77
G K+HYV G+G V+L+HGFG + + W +PELAKR+ V A DL G G SE Y
Sbjct: 19 GVKLHYVKGGQGPLVMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSEPPKTGYS 78
Query: 78 AMVWKDQIVDFLKEIVKE 95
+Q+ +L ++ ++
Sbjct: 79 G----EQVAVYLHKLARQ 92
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 18 GHKIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIEYD 77
G K+HYV G+G V+L+HGFG + + W +PELAKR+ V A DL G G SE Y
Sbjct: 19 GVKLHYVKGGQGPLVMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSEPPKTGYS 78
Query: 78 AMVWKDQIVDFLKEIVKE 95
+Q+ +L ++ ++
Sbjct: 79 G----EQVAVYLHKLARQ 92
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 18 GHKIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIEYD 77
G K+HYV G+G V+L+HGFG + + W +PELAKR+ V A DL G G SE Y
Sbjct: 19 GVKLHYVKGGQGPLVMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSEPPKTGYS 78
Query: 78 AMVWKDQIVDFLKEIVKE 95
+Q+ +L ++ ++
Sbjct: 79 G----EQVAVYLHKLARQ 92
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 18 GHKIHYVVQGEGSPVVLIHGFGASAF---HWRYNIPELAKRYKVYAVDLLGFGWSEKAII 74
G + Y+ G+G PV+LIHG GA A +WR IP LA+ Y+V A+D+LGFG + K I
Sbjct: 25 GVETRYLEAGKGQPVILIHGGGAGAESEGNWRNVIPILARHYRVIAMDMLGFGKTAKPDI 84
Query: 75 EYDAMVWKDQIVDFLKEIVKEPAV-LVGNSXXXXXXXXXXXXXPDQVTGVALLNSAG 130
EY + DF+K + + V +VGNS + V + L+ SAG
Sbjct: 85 EYTQDRRIRHLHDFIKAMNFDGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAG 141
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 93/213 (43%), Gaps = 47/213 (22%)
Query: 18 GHKIHYVVQG--EGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIE 75
G ++HYV G +G+PV+ +HG S++ WR IP +A ++ A DL+G G S+K ++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLD 78
Query: 76 Y---DAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSAGQF 132
Y D + + D F++ + E VLV + P++V G+A + F
Sbjct: 79 YFFDDHVRYLDA---FIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPF 135
Query: 133 GD--------------------GRK---GSNQSEESTLQKVFLKPLKEI--------FQR 161
GR+ N E L K ++PL E+ F +
Sbjct: 136 PTWDEWPEFARETFQAFRTADVGRELIIDQNAFIEGALPKCVVRPLTEVEMDHYREPFLK 195
Query: 162 IVLGFLFWQ-------AKQPARIVSVLKSVYIN 187
V W+ A +PA IV+++++ Y+N
Sbjct: 196 PVDREPLWRFPNELPIAGEPANIVALVEA-YMN 227
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 18 GHKIHYVVQG--EGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIE 75
G ++HYV G +G+PV+ +HG S++ WR IP +A ++ A DL+G G S+K ++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLD 78
Query: 76 Y---DAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALL 126
Y D + + D F++ + E VLV + P++V G+A +
Sbjct: 79 YFFDDHVRYLDA---FIEAVGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 18 GHKIHYVVQG--EGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIE 75
G ++HYV G +G+PV+ +HG S++ WR IP +A ++ A DL+G G S+K ++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLD 78
Query: 76 Y---DAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALL 126
Y D + + D F++ + E VLV + P++V G+A +
Sbjct: 79 YFFDDHVRYLDA---FIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 8/115 (6%)
Query: 18 GHKIHYVVQG--EGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIE 75
G ++HYV G +G+PV+ +HG S++ WR IP +A ++ A DL+G G S+K ++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLD 78
Query: 76 Y---DAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLN 127
Y D + + D F++ + E VLV + P++V G+A +
Sbjct: 79 YFFDDHVRYLDA---FIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 18 GHKIHYVVQG--EGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIE 75
G ++HYV G +G+PV+ +HG S++ WR IP +A ++ A DL+G G S+K ++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLD 78
Query: 76 Y---DAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALL 126
Y D + + D F++ + E VLV + P++V G+A +
Sbjct: 79 YFFDDHVRYLDA---FIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 18 GHKIHYVVQG--EGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIE 75
G ++HYV G +G+PV+ +HG S++ WR IP +A ++ A DL+G G S+K ++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLD 78
Query: 76 Y---DAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALL 126
Y D + + D F++ + E VLV + P++V G+A +
Sbjct: 79 YFFDDHVRYLDA---FIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 18 GHKIHYVVQG--EGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIE 75
G ++HYV G +G+PV+ +HG S++ WR IP +A ++ A DL+G G S+K ++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLD 78
Query: 76 Y---DAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALL 126
Y D + + D F++ + E VLV + P++V G+A +
Sbjct: 79 YFFDDHVRYLDA---FIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 18 GHKIHYVVQG--EGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIE 75
G ++HYV G +G+PV+ +HG S++ WR IP +A ++ A DL+G G S+K ++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLD 78
Query: 76 Y---DAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALL 126
Y D + + D F++ + E VLV + P++V G+A +
Sbjct: 79 YFFDDHVRYLDA---FIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 8/115 (6%)
Query: 18 GHKIHYVVQG--EGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIE 75
G ++HYV G +G+PV+ +HG S++ WR IP +A ++ A DL+G G S+K ++
Sbjct: 19 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLD 78
Query: 76 Y---DAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLN 127
Y D + + D F++ + E VLV + P++V G+A +
Sbjct: 79 YFFDDHVRYLDA---FIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 18 GHKIHYVVQG--EGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIE 75
G ++HYV G +G+PV+ +HG S++ WR IP +A ++ A DL+G G S+K ++
Sbjct: 16 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLD 75
Query: 76 Y---DAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALL 126
Y D + + D F++ + E VLV + P++V G+A +
Sbjct: 76 YFFDDHVRYLDA---FIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 126
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 18 GHKIHYVVQG--EGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIE 75
G ++HYV G +G+PV+ +HG S++ WR IP +A ++ A DL+G G S+K ++
Sbjct: 16 GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLD 75
Query: 76 Y---DAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALL 126
Y D + + D F++ + E VLV + P++V G+A +
Sbjct: 76 YFFDDHVRYLDA---FIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 126
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 20 KIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGW-----SEKAII 74
+I V G+G P++L+HGF + W P+LA+R+KV DL G+GW S++
Sbjct: 24 RIFARVGGDGPPLLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHT 83
Query: 75 EYDAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLN 127
Y Q+++ ++++ L G++ P +++ +A+L+
Sbjct: 84 PYTKRAMAKQLIEAMEQLGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLD 136
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 14/157 (8%)
Query: 22 HYVVQGEG-SP-VVLIHGFGASAF---HWRYNIPELAKRYKVYAVDLLGFGWSE-KAIIE 75
H +V G+ SP VVL+HG G A +WR IP+LA+ + V A DL+GFG SE
Sbjct: 20 HALVAGDPQSPAVVLLHGAGPGAHAASNWRPIIPDLAENFFVVAPDLIGFGQSEYPETYP 79
Query: 76 YDAMVW----KDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSAGQ 131
M W +QI+ + E + +VGNS P++ VAL+ S G
Sbjct: 80 GHIMSWVGMRVEQILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGA 139
Query: 132 FGDGRKGSNQSEESTLQKVFLKPLKEIFQRIVLGFLF 168
+ R E + L + P ++ ++ F++
Sbjct: 140 PMNARP----PELARLLAFYADPRLTPYRELIHSFVY 172
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 20 KIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGW-----SEKAII 74
+I V G+G P++L+HGF + W P+LA+R+KV DL G+GW S++
Sbjct: 24 RIFARVGGDGPPLLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHT 83
Query: 75 EYDAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLN 127
Y Q+++ ++++ L G+ P +++ +A+L+
Sbjct: 84 PYTKRAMAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLD 136
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 20 KIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGW-----SEKAII 74
+I V G+G P++L+HGF + W P+LA+R+KV DL G+GW S++
Sbjct: 24 RIFARVGGDGPPLLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHT 83
Query: 75 EYDAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLN 127
Y Q+++ ++++ L G+ P +++ +A+L+
Sbjct: 84 PYTKRAMAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLD 136
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 20 KIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGW-----SEKAII 74
+I V G+G P++L+HGF + W P+LA+R+KV DL G+GW S++
Sbjct: 24 RIFARVGGDGPPLLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHT 83
Query: 75 EYDAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLN 127
Y Q+++ ++++ L G+ P +++ +A+L+
Sbjct: 84 PYTKRAMAKQLIEAMEQLGHVHFALAGHXRGARVSYRLALDSPGRLSKLAVLD 136
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
Query: 18 GHKIHYVVQGEGSPVVLIHGFGASAFHWRYNIPE-LAKRYKVYAVDLLGFGWSEKAIIEY 76
G I YV +G G PV+ +HG S++ WR IP +A Y+ A DL+G G S K IEY
Sbjct: 18 GATIAYVDEGSGQPVLFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDLIGXGDSAKPDIEY 77
Query: 77 ---DAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNS 128
D + + D +D L + VLV + PD+V VA +
Sbjct: 78 RLQDHVAYXDGFIDALG---LDDXVLVIHDWGSVIGXRHARLNPDRVAAVAFXEA 129
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 258 IKEFYPNTTLVNFQAG-HCPHDEVPELVNKALMDWLSTVKPQASLQ 302
+ E PN + AG H ++ P L+ + + DWL KP ASL+
Sbjct: 258 LSENVPNLEVRFVGAGTHFLQEDHPHLIGQGIADWLRRNKPHASLE 303
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 73/165 (44%), Gaps = 6/165 (3%)
Query: 6 FKPEGYNFWTWRGHKIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLG 65
+K G+ H + + GE + +VL HGFG W++ +P L Y+V D +G
Sbjct: 13 YKKAGFMGVVEEAHNVKVIGSGEAT-IVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMG 71
Query: 66 FGWSEKAIIEYDAMV----WKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVT 121
G + ++D + ++ L+++ E + VG+S PD +
Sbjct: 72 AGTTNPDYFDFDRYSNLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFS 131
Query: 122 GVALLNSAGQFGDGRKGSNQSEESTLQKVFLKPLKEIFQRIVLGF 166
+ +++++ ++ + E+ L ++F + ++ ++ LGF
Sbjct: 132 KIVMISASPRYVNDVDYQGGFEQEDLNQLF-EAIRSNYKAWCLGF 175
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 17 RGHKIHYVVQG----EGSPVVLIHGFGASAFHWRYNIPELAKR-YKVYAVDLLGFGWSEK 71
RG +IH V +G VVL+HGF S + WR+ IP LA Y+V A+D G+G S K
Sbjct: 17 RGTRIHAVADSPPDQQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSK 76
Query: 72 AIIE--YDAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGV 123
++ Y +V L E A +VG+ PD+ GV
Sbjct: 77 YRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGV 130
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 17 RGHKIHYVVQG----EGSPVVLIHGFGASAFHWRYNIPELAKR-YKVYAVDLLGFGWSEK 71
RG +IH V +G VVL+HGF S + WR+ IP LA Y+V A+D G+G S K
Sbjct: 11 RGTRIHAVADSPPDQQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSK 70
Query: 72 AIIE--YDAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGV 123
++ Y +V L E A +VG+ PD+ GV
Sbjct: 71 YRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGV 124
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 20 KIHYVVQGEGSPVVLIHGFGASAFHW-RYNIPELAKRYKVYAVDLLGFGWSEKAIIEYDA 78
++Y G G PVVLIHGF S W R + L Y+V D GFG S + YD
Sbjct: 14 DLYYEDHGTGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDY 73
Query: 79 MVWKDQIVDFLKEIVKEPAVLVGNS 103
+ + L+ + + AVLVG S
Sbjct: 74 DTFAADLNTVLETLDLQDAVLVGFS 98
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 20 KIHYVVQGEGSPVVLIHGFGASAFHW-RYNIPELAKRYKVYAVDLLGFGWSEKAIIEYDA 78
++Y G G PVVLIHGF S W R + L Y+V D GFG S + YD
Sbjct: 14 DLYYEDHGTGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDY 73
Query: 79 MVWKDQIVDFLKEIVKEPAVLVGNS 103
+ + L+ + + AVLVG S
Sbjct: 74 DTFAADLNTVLETLDLQDAVLVGFS 98
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Query: 20 KIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAI-----I 74
+I+ V G G+P++L+HG+ + W P LA + V A DL G+G S + I
Sbjct: 16 RINLVKAGHGAPLLLLHGYPQTHVMWHKIAPLLANNFTVVATDLRGYGDSSRPASVPHHI 75
Query: 75 EYDAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSA 129
Y V V+ + ++ E +VG+ P +V +ALL+ A
Sbjct: 76 NYSKRVMAQDQVEVMSKLGYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDIA 130
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 20 KIHYVVQGEGSPVVLIHGFGASAFHWRYNIPE-LAKRYKVYAVDLLGFGWSEKAIIEYDA 78
+++Y QG G PVVLIHG+ W E LA+ Y+V D GFG S K YD
Sbjct: 14 ELYYEDQGSGQPVVLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSSKVNTGYDY 73
Query: 79 MVWKDQIVDFLKEIVKEPAVLVGNS 103
+ + L+ + VLVG S
Sbjct: 74 DTFAADLHTVLETLDLRDVVLVGFS 98
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 20 KIHYVVQGEGSPVVLIHGFGASAFHW-RYNIPELAKRYKVYAVDLLGFGWSEKAIIEYDA 78
++Y G G PVVLIHGF S W R + L Y+V D GFG S + YD
Sbjct: 14 DLYYEDHGAGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDY 73
Query: 79 MVWKDQIVDFLKEIVKEPAVLVGNS 103
+ + L+ + + AVLVG S
Sbjct: 74 DTFAADLNTVLETLDLQDAVLVGFS 98
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 21 IHYVVQGEGSPVVLIHGFGASAFHW-RYNIPELAKRYKVYAVDLLGFGWSEKAIIEYDAM 79
++Y G G PVVLIHGF S W R + L Y+V D GFG S + YD
Sbjct: 16 LYYEDHGTGVPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDYD 75
Query: 80 VWKDQIVDFLKEIVKEPAVLVGNS 103
+ + L+ + + AVLVG S
Sbjct: 76 TFAADLNTVLETLDLQDAVLVGFS 99
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 17 RGHKIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIEY 76
H + + GE + +VL HGFG W++ +P L Y+V D +G G + ++
Sbjct: 6 EAHNVKVIGSGEAT-IVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDF 64
Query: 77 DAMV----WKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSAGQF 132
D + ++ L+++ E + VG+S PD + + +++++ ++
Sbjct: 65 DRYSNLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRY 124
Query: 133 GDGRKGSNQSEESTLQKVFLKPLKEIFQRIVLGF 166
+ E+ L ++F + ++ ++ LGF
Sbjct: 125 VNDVDYQGGFEQEDLNQLF-EAIRSNYKAWCLGF 157
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 17 RGHKIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIEY 76
H + + GE + +VL HGFG W++ +P L Y+V D +G G + ++
Sbjct: 8 EAHNVKVIGSGEAT-IVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDF 66
Query: 77 DAMV----WKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSAGQF 132
D + ++ L+++ E + VG+S PD + + +++++ ++
Sbjct: 67 DRYSNLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRY 126
Query: 133 GDGRKGSNQSEESTLQKVFLKPLKEIFQRIVLGF 166
+ E+ L ++F + ++ ++ LGF
Sbjct: 127 VNDVDYQGGFEQEDLNQLF-EAIRSNYKAWCLGF 159
>pdb|1G5F|A Chain A, Structure Of Linb Complexed With 1,2-Dichloroethane
pdb|1G4H|A Chain A, Linb Complexed With Butan-1-Ol
pdb|1G42|A Chain A, Structure Of 1,3,4,6-Tetrachloro-1,4-Cyclohexadiene
Hydrolase (Linb) From Sphingomonas Paucimobilis
Complexed With 1,2-Dichloropropane
Length = 296
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 17 RGHKIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEK 71
+G ++ Y+ +G G P++ HG S++ WR +P A ++ A DL+G G S+K
Sbjct: 17 KGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDK 71
>pdb|1MJ5|A Chain A, Linb (Haloalkane Dehalogenase) From Sphingomonas
Paucimobilis Ut26 At Atomic Resolution
Length = 302
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 17 RGHKIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEK 71
+G ++ Y+ +G G P++ HG S++ WR +P A ++ A DL+G G S+K
Sbjct: 17 KGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDK 71
>pdb|1CV2|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 At 1.6 A Resolution
pdb|1D07|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 With 1,3-Propanediol, A
Product Of Debromidation Of Dibrompropane, At 2.0a
Resolution
pdb|2BFN|A Chain A, The Crystal Structure Of The Complex Of The Haloalkane
Dehalogenase Linb With The Product Of Dehalogenation
Reaction 1,2-Dichloropropane
Length = 296
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 17 RGHKIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEK 71
+G ++ Y+ +G G P++ HG S++ WR +P A ++ A DL+G G S+K
Sbjct: 17 KGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDK 71
>pdb|1IZ7|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26
At 1.6 A Resolution
pdb|1IZ8|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26
With 1,3-Propanediol, A Product Of Debromidation Of
Dibrompropane, At 2.0a Resolution
pdb|1K5P|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 At 1.8a Resolution
pdb|1K63|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis With Ut26
2-Bromo-2-Propene-1-Ol At 1.8a Resolution
pdb|1K6E|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 With 1,2-Propanediol
(Product Of Dehalogenation Of 1,2-Dibromopropane) At
1.85a
Length = 295
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 17 RGHKIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEK 71
+G ++ Y+ +G G P++ HG S++ WR +P A ++ A DL+G G S+K
Sbjct: 16 KGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDK 70
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 20 KIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKA----IIE 75
KIHYV +G G ++L+HG+ + W I LA+ Y V DL GFG SEK + +
Sbjct: 20 KIHYVREGAGPTLLLLHGWPGFWWEWSKVIGPLAEHYDVIVPDLRGFGDSEKPDLNDLSK 79
Query: 76 YDAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLN 127
Y D L + E A +VG+ D+V A+ +
Sbjct: 80 YSLDKAADDQAALLDALGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFD 131
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Query: 21 IHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAI-----IE 75
I+ VV G G ++L+HGF + W P LA Y V DL G+G S K +
Sbjct: 17 INCVVGGSGPALLLLHGFPQNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHAN 76
Query: 76 YDAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLN 127
Y + ++ + E LVG++ PD V +A+L+
Sbjct: 77 YSFRAMASDQRELMRTLGFERFHLVGHARGGRTGHRMALDHPDSVLSLAVLD 128
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 21 IHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAI-----IE 75
I+ VV G G ++L+HGF + W P LA Y V DL G+G S K +
Sbjct: 17 INCVVGGSGPALLLLHGFPQNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHAN 76
Query: 76 YDAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLN 127
Y + ++ + E LVG+ PD V +A+L+
Sbjct: 77 YSFRAMASDQRELMRTLGFERFHLVGHDRGGRTGHRMALDHPDSVLSLAVLD 128
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 13 FWTWRGHKIHYVVQGEGS-PVVL-IHGFGASAFHWR-YNIPELAKRYKVYAVDLLGFGWS 69
F + G++I G PVVL IHG W+ +P A+ Y+V A DL G G S
Sbjct: 8 FLEFGGNQICLCSWGSPEHPVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRS 67
Query: 70 E--KAIIEYDAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALL 126
+ + Y ++ + QI ++E+ +P +LVG+S P ++ + L+
Sbjct: 68 SHLEMVTSYSSLTFLAQIDRVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELILV 126
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 20 KIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKR-YKVYAVDLLGFGWSEK 71
+I+Y G G PVVLIHG+ S W Y +P L + Y+V D GFG S +
Sbjct: 18 EIYYEDHGTGKPVVLIHGWPLSGRSWEYQVPALVEAGYRVITYDRRGFGKSSQ 70
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%)
Query: 26 QGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIEYDAMVWKDQI 85
+G G + HG +++ + L+ R+ AVD G G S+K Y+A + D I
Sbjct: 65 KGSGPLXLFFHGITSNSAVFEPLXIRLSDRFTTIAVDQRGHGLSDKPETGYEANDYADDI 124
Query: 86 VDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLN 127
++ + + A+LVG+S PD V V ++
Sbjct: 125 AGLIRTLARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAID 166
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 12 NFWTWRGHKIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKR-YKVYAVDLLGFGWSE 70
F G +I++ G G PV+ HG+ A W Y + L+ R Y+ A D GFG S+
Sbjct: 2 TFVAKDGTQIYFKDWGSGKPVLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSD 61
Query: 71 KAIIEYDAMVWKDQIVDFLKEIVKEPAVLVGNS 103
+ D + D I ++ + + LVG S
Sbjct: 62 QPWTGNDYDTFADDIAQLIEHLDLKEVTLVGFS 94
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 18 GHKIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKR-YKVYAVDLLGFGWSEKAIIEY 76
G +I++ G G PV+ HG+ A W Y + L+ R Y+ A D GFG S++
Sbjct: 8 GTQIYFKDWGSGKPVLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGN 67
Query: 77 DAMVWKDQIVDFLKEIVKEPAVLVGNS 103
D + D I ++ + + LVG S
Sbjct: 68 DYDTFADDIAQLIEHLDLKEVTLVGFS 94
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 18 GHKIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKR-YKVYAVDLLGFGWSEKAIIEY 76
G +I++ G G PV+ HG+ A W Y + L+ R Y+ A D GFG S++
Sbjct: 8 GTQIYFKDWGSGKPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGN 67
Query: 77 DAMVWKDQIVDFLKEIVKEPAVLVGNS 103
D + D I ++ + + LVG S
Sbjct: 68 DYDTFADDIAQLIEHLDLKEVTLVGFS 94
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 18 GHKIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKR-YKVYAVDLLGFGWSEKAIIEY 76
G +I++ G G PV+ HG+ A W Y + L+ R Y+ A D GFG S++
Sbjct: 8 GTQIYFKDWGSGKPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGN 67
Query: 77 DAMVWKDQIVDFLKEIVKEPAVLVGNS 103
D + D I ++ + + LVG S
Sbjct: 68 DYDTFADDIAQLIEHLDLKEVTLVGFS 94
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 18 GHKIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKR-YKVYAVDLLGFGWSEKAIIEY 76
G +I++ G G PV+ HG+ A W Y + L+ R Y+ A D GFG S++
Sbjct: 8 GTQIYFKDWGSGKPVLFSHGWILDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGN 67
Query: 77 DAMVWKDQIVDFLKEIVKEPAVLVGNS 103
D + D I ++ + + LVG S
Sbjct: 68 DYDTFADDIAQLIEHLDLKEVTLVGFS 94
>pdb|2O2H|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,2-Dichloroethane
pdb|2O2I|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,3-Propandiol
Length = 300
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 18 GHKIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEK 71
G ++ Y+ +G+G +V HG S++ WR +P L ++ A DL+G G S+K
Sbjct: 19 GKRMAYIDEGKGDAIVFQHGNPTSSYLWRNIMPHLEGLGRLVACDLIGMGASDK 72
>pdb|2QVB|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
pdb|2QVB|B Chain B, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
Length = 297
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 18 GHKIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEK 71
G ++ Y+ +G+G +V HG S++ WR +P L ++ A DL+G G S+K
Sbjct: 17 GKRMAYIDEGKGDAIVFQHGNPTSSYLWRNIMPHLEGLGRLVACDLIGMGASDK 70
>pdb|3QVM|A Chain A, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
pdb|3QVM|B Chain B, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
Length = 282
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 24 VVQGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSE 70
+ G V+L HGFG WR+ +PEL K++ V D +G G S+
Sbjct: 23 ITGGGEKTVLLAHGFGCDQNXWRFXLPELEKQFTVIVFDYVGSGQSD 69
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From
Pseudomonas Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From
Pseudomonas Aeruginosa, With Bound Mfa
Length = 301
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 1 MERLPFKPEGYNFWTWR--GHKIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKRYKV 58
M P P G+++ T ++ V+G G P++L+HG+ + W P LA+ Y V
Sbjct: 2 MNTDPLLP-GFDYLTLHTSAARLRVAVKGSGPPLLLLHGYPQTHLAWHRIAPRLAEDYSV 60
Query: 59 YAVDLLGFGWS----EKAIIEYDAMVWKDQI 85
DL G+G S E+ A + +DQ+
Sbjct: 61 VLADLRGYGESRALDEEGADYSKAALARDQL 91
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 10/157 (6%)
Query: 16 WRGHKIHYVVQGEGSPVVLIHGFGASAFHWR-YNIPE-LAKRYKVYAVDLLGFGWSEKAI 73
+R + Y G G PVV I G G + W + +P LA Y+ D G G +E A
Sbjct: 30 FRVINLAYDDNGTGDPVVFIAGRGGAGRTWHPHQVPAFLAAGYRCITFDNRGIGATENA- 88
Query: 74 IEYDAMVWKDQIVD---FLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSAG 130
+ + + D ++ + PA +VG S P+ V+ L+ + G
Sbjct: 89 ---EGFTTQTMVADTAALIETLDIAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRG 145
Query: 131 QFGDGRKGSNQSEESTLQK-VFLKPLKEIFQRIVLGF 166
+ R+ N++E V L P + R++ F
Sbjct: 146 RLDRARQFFNKAEAELYDSGVQLPPTYDARARLLENF 182
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 17 RGHKIHYVVQG--EGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAII 74
R + H + G + P+VL+HG S+ W NI + + +Y+ YAVD++G K+I
Sbjct: 53 RFGQTHVIASGPEDAPPLVLLHGALFSSTXWYPNIADWSSKYRTYAVDIIGD--KNKSIP 110
Query: 75 EYDAMVWKDQ---IVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSAGQ 131
E + D ++D + E + +G S P++V A+L+ A
Sbjct: 111 ENVSGTRTDYANWLLDVFDNLGIEKSHXIGLSLGGLHTXNFLLRXPERVKSAAILSPAET 170
Query: 132 F 132
F
Sbjct: 171 F 171
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 12 NFWTWRGHKIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKR-YKVYAVDLLGFGWSE 70
F T G +I+Y G G P+V HG+ +A W + LA + Y+V A D G G S
Sbjct: 2 TFTTRDGTQIYYKDWGSGQPIVFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRGHGRSS 61
Query: 71 KAIIEYDAMVWKDQIVDFLKEIVKEPAVLVGNS 103
+ D + D + ++ + AVL G S
Sbjct: 62 QPWSGNDMDTYADDLAQLIEHLDLRDAVLFGFS 94
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Query: 20 KIHYVVQGEGS--PVVLIHGFGASAFHW---RYNIPELAKRYKVYAVDLLGFGWSEK--- 71
K+HY G G+ VVL+HG G A W NI LA+ + V AVD G+G S+K
Sbjct: 45 KLHYHEAGVGNDQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAE 104
Query: 72 --AIIEYDAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSA 129
Y AM K ++ LVGNS P + + L+
Sbjct: 105 HGQFNRYAAMALK----GLFDQLGLGRVPLVGNSLGGGTAVRFALDYPARAGRLVLMGPG 160
Query: 130 G 130
G
Sbjct: 161 G 161
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 20 KIHYVVQGEGS--PVVLIHGFGASAFHW---RYNIPELAKRYKVYAVDLLGFGWSEK 71
K+HY G G+ VVL+HG G A W NI LA+ + V AVD G+G S+K
Sbjct: 25 KLHYHEAGVGNDQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDK 81
>pdb|4IH4|A Chain A, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|B Chain B, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|C Chain C, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|D Chain D, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
Length = 267
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 5/132 (3%)
Query: 25 VQGEGSPVV-LIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIEYDAMVWKD 83
V G G ++ L HGFG W +P + Y+V DL+ G +++ D
Sbjct: 14 VVGTGDRILFLAHGFGTDQSAWHLILPYFTQNYRVVLYDLVCAGSVNPDYFDFNRYTTLD 73
Query: 84 QIVDFLKEIVK----EPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSAGQFGDGRKGS 139
VD L IV + VG+S P+ + + L+ + +F +
Sbjct: 74 PYVDDLLNIVDSLGIQNCAYVGHSVSAMIGIIASIRRPELFSKLILIGFSPRFLNDEDYH 133
Query: 140 NQSEESTLQKVF 151
EE ++KVF
Sbjct: 134 GGFEEGEIEKVF 145
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 18 GHKIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKR-YKVYAVDLLGFG 67
G +H GEG ++ IHGF + WR+ + LA+R Y+ A DL G+G
Sbjct: 20 GLNMHLAELGEGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYG 70
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide
Hydrolase I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide
Hydrolase I (Steh1)
Length = 328
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 18 GHKIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKR-YKVYAVDLLGFG 67
G +H GEG ++ IHGF + WR+ + LA+R Y+ A DL G+G
Sbjct: 20 GLNMHLAELGEGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYG 70
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 14/165 (8%)
Query: 19 HKIHYVVQGEGS-PVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIEYD 77
+ I + +G+G+ +VL+HG+G +A WR EL+ + ++ VDL GFG S +
Sbjct: 2 NNIWWQTKGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHLVDLPGFGRSRG----FG 57
Query: 78 AMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSAGQFGDGRK 137
A+ D L++ + A+ +G + P++V + + S+ F R
Sbjct: 58 ALSLADMAEAVLQQ-APDKAIWLGWALGGLVASQIALTHPERVQALVTVASSPCF-SARD 115
Query: 138 GSNQSEESTLQKVFLKPLKEIFQRIVLGFLFWQ------AKQPAR 176
+ L F + L + FQR V FL Q A+Q AR
Sbjct: 116 EWPGIKPDVLAG-FQQQLSDDFQRTVERFLALQTMGTETARQDAR 159
>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
Length = 269
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 5/132 (3%)
Query: 25 VQGEGSPV-VLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIEYDAMVWKD 83
V G G V VL HGFG W +P + Y+V DL+ G ++ D
Sbjct: 15 VVGSGERVLVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAGSVNPDFFDFRRYTTLD 74
Query: 84 QIVDFLKEIVK----EPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSAGQFGDGRKGS 139
VD L I+ + VG+S P+ + + L+ ++ +F +
Sbjct: 75 PYVDDLLHILDALGIDCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRFLNDEDYH 134
Query: 140 NQSEESTLQKVF 151
E+ ++KVF
Sbjct: 135 GGFEQGEIEKVF 146
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 26 QGEGSPVVLIHGFGASAFHWRYNIP-ELAKRYKVYAVDLLGFGWSEKAII---EYDAMVW 81
+GEG+P+++IHG +S + + E+ K+++V A DL G G S AI Y +
Sbjct: 21 EGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGY 80
Query: 82 KDQIVDFLKEIVKEPAVLVG 101
D + + ++++ AV+ G
Sbjct: 81 ADAMTEVMQQLGIADAVVFG 100
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 26 QGEGSPVVLIHGFGASAFHWRYNIP-ELAKRYKVYAVDLLGFGWSEKAII---EYDAMVW 81
+GEG+P+++IHG +S + + E+ K+++V A DL G G S AI Y +
Sbjct: 21 EGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGY 80
Query: 82 KDQIVDFLKEIVKEPAVLVG 101
D + + ++++ AV+ G
Sbjct: 81 ADAMTEVMQQLGIADAVVFG 100
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 26 QGEGSPVVLIHGFGASAFHWRYNIP-ELAKRYKVYAVDLLGFGWSEKAII---EYDAMVW 81
+GEG+P+++IHG +S + + E+ K+++V A DL G G S AI Y +
Sbjct: 21 EGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYSMEGY 80
Query: 82 KDQIVDFLKEIVKEPAVLVG 101
D + + ++++ AV+ G
Sbjct: 81 ADAMTEVMQQLGIADAVVFG 100
>pdb|4DNQ|A Chain A, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|B Chain B, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|C Chain C, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|D Chain D, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|E Chain E, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|F Chain F, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|G Chain G, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|H Chain H, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|I Chain I, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|J Chain J, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|K Chain K, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|L Chain L, Crystal Structure Of Dad2 S96a Mutant
Length = 269
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 5/132 (3%)
Query: 25 VQGEGSPV-VLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIEYDAMVWKD 83
V G G V VL HGFG W +P + Y+V DL+ G ++ D
Sbjct: 15 VVGSGERVLVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAGSVNPDFFDFRRYTTLD 74
Query: 84 QIVDFLKEIVK----EPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSAGQFGDGRKGS 139
VD L I+ + VG++ P+ + + L+ ++ +F +
Sbjct: 75 PYVDDLLHILDALGIDCCAYVGHAVSAMIGILASIRRPELFSKLILIGASPRFLNDEDYH 134
Query: 140 NQSEESTLQKVF 151
E+ ++KVF
Sbjct: 135 GGFEQGEIEKVF 146
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 19 HKIHYVVQGEGS-PVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIEYD 77
+ I + +G+G+ +VL+HG+G +A WR EL+ + ++ VDL GFG S +
Sbjct: 2 NNIWWQTKGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHLVDLPGFGRSRG----FG 57
Query: 78 AMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSAGQF 132
A+ D L++ + A+ +G S P++V + + S+ F
Sbjct: 58 ALSLADXAEAVLQQ-APDKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCF 111
>pdb|2XUA|A Chain A, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
pdb|2XUA|H Chain H, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
Length = 266
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 4/120 (3%)
Query: 18 GHKIHYVVQGE---GSP-VVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAI 73
G ++HY + GE +P +VL + G W + L+K ++V D G G SE
Sbjct: 11 GTELHYRIDGERHGNAPWIVLSNSLGTDLSXWAPQVAALSKHFRVLRYDTRGHGHSEAPK 70
Query: 74 IEYDAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSAGQFG 133
Y ++ + A G S D++ VAL N+A + G
Sbjct: 71 GPYTIEQLTGDVLGLXDTLKIARANFCGLSXGGLTGVALAARHADRIERVALCNTAARIG 130
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Query: 18 GHKIHYVVQG-EGSPVVL-IHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIE 75
G + Y G + +PVVL +HG S+ WR +P ++ A DL+GFG S K I
Sbjct: 16 GSSMAYRETGAQDAPVVLFLHGNPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKPDIA 75
Query: 76 YDAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLN 127
Y + F+++ A LV PD V G+A +
Sbjct: 76 YRFFDHVRYLDAFIEQRGVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFME 127
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Query: 18 GHKIHYVVQG-EGSPVVL-IHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIE 75
G + Y G + +PVVL +HG S+ WR +P ++ A DL+GFG S K I
Sbjct: 16 GSSMAYRETGAQDAPVVLFLHGNPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKPDIA 75
Query: 76 YDAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLN 127
Y + F+++ A LV PD V G+A +
Sbjct: 76 YRFFDHVRYLDAFIEQRGVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFME 127
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Query: 18 GHKIHYVVQG-EGSPVVL-IHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIE 75
G + Y G + +PVVL +HG S+ WR +P ++ A DL+GFG S K I
Sbjct: 16 GSSMAYRETGAQDAPVVLFLHGNPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKPDIA 75
Query: 76 YDAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLN 127
Y + F+++ A LV PD V G+A +
Sbjct: 76 YRFFDHVRYLDAFIEQRGVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFME 127
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
Length = 266
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 5/132 (3%)
Query: 25 VQGEGSPVVLI-HGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIE---YDAM- 79
V G G VV++ HGFG W +P L + ++V DL+ G + YD +
Sbjct: 12 VVGSGERVVVLSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFDFRRYDNLD 71
Query: 80 VWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSAGQFGDGRKGS 139
+ D ++ L + VG+S PD + L+ ++ +F +
Sbjct: 72 AYVDDLLAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASPRFLNDSDYH 131
Query: 140 NQSEESTLQKVF 151
E +Q+VF
Sbjct: 132 GGFELEEIQQVF 143
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 26 QGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKA-IIEYDAMVWKDQ 84
Q SP+VL+HG S + +L + + VD+ G S + ++ Y AM
Sbjct: 13 QHNNSPIVLVHGLFGSLDNLGVLARDLVNDHNIIQVDVRNHGLSPREPVMNYPAMA--QD 70
Query: 85 IVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSA 129
+VD L + + A +G+S PD++ + ++ A
Sbjct: 71 LVDTLDALQIDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIA 115
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 5/132 (3%)
Query: 25 VQGEGSPVVLI-HGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIE---YDAM- 79
V G G VV++ HGFG W +P L + ++V DL+ G + YD +
Sbjct: 14 VVGSGERVVVLSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFDFRRYDNLD 73
Query: 80 VWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSAGQFGDGRKGS 139
+ D ++ L + VG+S PD + L+ ++ +F +
Sbjct: 74 AYVDDLLAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASPRFLNDSDYH 133
Query: 140 NQSEESTLQKVF 151
E +Q+VF
Sbjct: 134 GGFELEEIQQVF 145
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Query: 21 IHYVVQGEGSPVVLIHGFGASAFHW----RYNIPELAKRYKVYAVDLLGFGWSEKAII-E 75
IHY G G V+++HG G A W R P + Y+V D GF S+ ++ E
Sbjct: 25 IHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDE 84
Query: 76 YDAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSAGQFGDG 135
+V + + + + A LVGNS PD++ G +L G G
Sbjct: 85 QRGLVNARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRI-GKLILMGPGGLGPS 143
Query: 136 RKGSNQSEE-STLQKVFLKPLKEIFQRIVLGFLFWQA 171
E L K++ +P E ++++ FL+ Q+
Sbjct: 144 MFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQS 180
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Query: 21 IHYVVQGEGSPVVLIHGFGASAFHW----RYNIPELAKRYKVYAVDLLGFGWSEKAII-E 75
IHY G G V+++HG G A W R P + Y+V D GF S+ ++ E
Sbjct: 25 IHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDE 84
Query: 76 YDAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSAGQFGDG 135
+V + + + + A LVGNS PD++ G +L G G
Sbjct: 85 QRGLVNARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRI-GKLILMGPGGLGPS 143
Query: 136 RKGSNQSEE-STLQKVFLKPLKEIFQRIVLGFLFWQA 171
E L K++ +P E ++++ FL+ Q+
Sbjct: 144 MFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQS 180
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 20 KIHYVVQGEGS-PVVLIHGFGASAFHW----RYNIPELAKRYKVYAVDLLGFGWSEKAII 74
+IH+ G+G VVL+HG G A W R P + Y+V +D G+G S+ +
Sbjct: 26 RIHFNDCGQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKSDSVV- 84
Query: 75 EYDAMVWKDQIVDFLKEIVKEPAV----LVGNSXXXXXXXXXXXXXPDQVTGVALLNSA 129
++ D LK +V + + L+GNS P++V + L+
Sbjct: 85 --NSGSRSDLNARILKSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGG 141
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 1 MERLPFKPEGYN-FWTWRGHKIHYVVQGEGSP---VVLIHGFGASAFHWRYNIPELAKR- 55
+++ PF P + + G + HY+ +G + +HG ++ +R IP A+
Sbjct: 15 LDQYPFSPNYLDDLPGYPGLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESG 74
Query: 56 YKVYAVDLLGFGWSEKAIIEYD 77
+V A D GFG S+K + E D
Sbjct: 75 ARVIAPDFFGFGKSDKPVDEED 96
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Query: 26 QGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKA-IIEYDAMVWKDQ 84
Q SP+VL+HG S + +L + + VD+ G S + ++ Y AM
Sbjct: 13 QHNNSPIVLVHGLFGSLDNLGVLARDLVNDHNIIQVDVRNHGLSPREPVMNYPAMA--QD 70
Query: 85 IVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSA 129
+VD L + A +G+S PD++ + ++ A
Sbjct: 71 LVDTLDAQQIDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIA 115
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide
Ions: Studies With Halide Compounds Reveal A Halide
Binding Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide
Ions: Studies With Halide Compounds Reveal A Halide
Binding Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At
Ph 6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide
Ions: Studies With Halide Compounds Reveal A Halide
Binding Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide
Ions: Studies With Halide Compounds Reveal A Halide
Binding Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme
To Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 1 MERLPFKPEGYN-FWTWRGHKIHYVVQGEGSP---VVLIHGFGASAFHWRYNIPELAKR- 55
+++ PF P + + G + HY+ +G + +HG ++ +R IP A+
Sbjct: 15 LDQYPFSPNYLDDLPGYPGLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESG 74
Query: 56 YKVYAVDLLGFGWSEKAIIEYD 77
+V A D GFG S+K + E D
Sbjct: 75 ARVIAPDFFGFGKSDKPVDEED 96
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration
Of Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 1 MERLPFKPEGYN-FWTWRGHKIHYVVQGEGSP---VVLIHGFGASAFHWRYNIPELAKR- 55
+++ PF P + + G + HY+ +G + +HG ++ +R IP A+
Sbjct: 15 LDQYPFSPNYLDDLPGYPGLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESG 74
Query: 56 YKVYAVDLLGFGWSEKAIIEYD 77
+V A D GFG S+K + E D
Sbjct: 75 ARVIAPDFFGFGKSDKPVDEED 96
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 1 MERLPFKPEGYN-FWTWRGHKIHYVVQGEGSP---VVLIHGFGASAFHWRYNIPELAKR- 55
+++ PF P + + G + HY+ +G + +HG ++ +R IP A+
Sbjct: 15 LDQYPFSPNYLDDLPGYPGLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESG 74
Query: 56 YKVYAVDLLGFGWSEKAIIEYD 77
+V A D GFG S+K + E D
Sbjct: 75 ARVIAPDFFGFGKSDKPVDEED 96
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 1 MERLPFKPEGYN-FWTWRGHKIHYVVQGEGSP---VVLIHGFGASAFHWRYNIPELAKR- 55
+++ PF P + + G + HY+ +G + +HG ++ +R IP A+
Sbjct: 15 LDQYPFSPNYLDDLPGYPGLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESG 74
Query: 56 YKVYAVDLLGFGWSEKAIIEYD 77
+V A D GFG S+K + E D
Sbjct: 75 ARVIAPDFFGFGKSDKPVDEED 96
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Query: 21 IHYVVQGEGSPVVLIHGFGASAFHW----RYNIPELAKRYKVYAVDLLGFGWSEKAII-E 75
IHY G G V+++HG G A W R P + Y+V D GF S+ ++ E
Sbjct: 25 IHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDE 84
Query: 76 YDAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSAGQFGDG 135
+V + + + + A LVGN+ PD++ G +L G G
Sbjct: 85 QRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRI-GKLILMGPGGLGPS 143
Query: 136 RKGSNQSEE-STLQKVFLKPLKEIFQRIVLGFLFWQA 171
E L K++ +P E ++++ FL+ Q+
Sbjct: 144 MFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQS 180
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Query: 21 IHYVVQGEGSPVVLIHGFGASAFHW----RYNIPELAKRYKVYAVDLLGFGWSEKAII-E 75
IHY G G V+++HG G A W R P + Y+V D GF S+ ++ E
Sbjct: 25 IHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDE 84
Query: 76 YDAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSAGQFGDG 135
+V + + + + A LVGN+ PD++ G +L G G
Sbjct: 85 QRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRI-GKLILMGPGGLGPS 143
Query: 136 RKGSNQSEE-STLQKVFLKPLKEIFQRIVLGFLFWQA 171
E L K++ +P E ++++ FL+ Q+
Sbjct: 144 MFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQS 180
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Query: 21 IHYVVQGEGSPVVLIHGFGASAFHW----RYNIPELAKRYKVYAVDLLGFGWSEKAII-E 75
IHY G G V+++HG G A W R P + Y+V D GF S+ ++ E
Sbjct: 25 IHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDE 84
Query: 76 YDAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSAGQFGDG 135
+V + + + + A LVGN+ PD++ G +L G G
Sbjct: 85 QRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRI-GKLILMGPGGLGPS 143
Query: 136 RKGSNQSEE-STLQKVFLKPLKEIFQRIVLGFLFWQA 171
E L K++ +P E ++++ FL+ Q+
Sbjct: 144 MFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQS 180
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced
With Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced
With Trp
Length = 310
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 1 MERLPFKPEGYN-FWTWRGHKIHYVVQGEGSP---VVLIHGFGASAFHWRYNIPELAKR- 55
+++ PF P + + G + HY+ +G + +HG ++ +R IP A+
Sbjct: 15 LDQYPFSPNYLDDLPGYPGLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESG 74
Query: 56 YKVYAVDLLGFGWSEKAIIEYD 77
+V A D GFG S+K + E D
Sbjct: 75 ARVIAPDFFGFGKSDKPVDEED 96
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Query: 21 IHYVVQGEGSPVVLIHGFGASAFHW----RYNIPELAKRYKVYAVDLLGFGWSEKAII-E 75
IHY G G V+++HG G A W R P + Y+V D GF S+ ++ E
Sbjct: 22 IHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDE 81
Query: 76 YDAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSAGQFGDG 135
+V + + + + A LVGN+ PD++ G +L G G
Sbjct: 82 QRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRI-GKLILMGPGGLGPS 140
Query: 136 RKGSNQSEE-STLQKVFLKPLKEIFQRIVLGFLFWQA 171
E L K++ +P E ++++ FL+ Q+
Sbjct: 141 MFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQS 177
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green
Fluorescent Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green
Fluorescent Protein From Renilla Reniformis
Length = 318
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 32 VVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKA 72
V+ +HG S++ WR+ +P + + DL+G G S K+
Sbjct: 46 VIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKS 86
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green
Fluorescent Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green
Fluorescent Protein From Renilla Reniformis
Length = 319
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 32 VVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKA 72
V+ +HG S++ WR+ +P + + DL+G G S K+
Sbjct: 47 VIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKS 87
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green
Fluorescent Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green
Fluorescent Protein From Renilla Reniformis
Length = 319
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 32 VVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKA 72
V+ +HG S++ WR+ +P + + DL+G G S K+
Sbjct: 47 VIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKS 87
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green
Fluorescent Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green
Fluorescent Protein From Renilla Reniformis
Length = 310
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 32 VVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKA 72
V+ +HG S++ WR+ +P + + DL+G G S K+
Sbjct: 46 VIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKS 86
>pdb|1I6W|A Chain A, The Crystal Structure Of Bacillus Subtilis Lipase: A
Minimal AlphaBETA HYDROLASE ENZYME
pdb|1I6W|B Chain B, The Crystal Structure Of Bacillus Subtilis Lipase: A
Minimal AlphaBETA HYDROLASE ENZYME
pdb|1ISP|A Chain A, Crystal Structure Of Bacillus Subtilis Lipase At 1.3a
Resolution
pdb|1R4Z|A Chain A, Bacillus Subtilis Lipase A With Covalently Bound Rc-Ipg-
Phosphonate-Inhibitor
pdb|1R4Z|B Chain B, Bacillus Subtilis Lipase A With Covalently Bound Rc-Ipg-
Phosphonate-Inhibitor
pdb|1R50|A Chain A, Bacillus Subtilis Lipase A With Covalently Bound Sc-Ipg-
Phosphonate-Inhibitor
pdb|1R50|B Chain B, Bacillus Subtilis Lipase A With Covalently Bound Sc-Ipg-
Phosphonate-Inhibitor
Length = 181
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 28 EGSPVVLIHGFGASAFHW----RYNIPELAKRYKVYAVDL 63
E +PVV++HG G ++F++ Y + + R K+YAVD
Sbjct: 2 EHNPVVMVHGIGGASFNFAGIKSYLVSQGWSRDKLYAVDF 41
>pdb|1T4M|A Chain A, Structure Of A Thermostable Double Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 28 EGSPVVLIHGFGASAFHW----RYNIPELAKRYKVYAVDL 63
E +PVV++HG G ++F++ Y + + R K+YAVD
Sbjct: 2 EHNPVVMVHGIGGASFNFAGIKSYLVSQGWSRDKLYAVDF 41
>pdb|3D2A|A Chain A, Structure Of 1-17a4, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 28 EGSPVVLIHGFGASAFHW----RYNIPELAKRYKVYAVDL 63
E +PVV++HG G ++F++ Y + + R K+YAVD
Sbjct: 2 EHNPVVMVHGIGGASFNFAGIKSYLVSQGWSRDKLYAVDF 41
>pdb|1T2N|A Chain A, Structure Of A Thermostable Triple Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 28 EGSPVVLIHGFGASAFHW----RYNIPELAKRYKVYAVDL 63
E +PVV++HG G ++F++ Y + + R K+YAVD
Sbjct: 2 EHNPVVMVHGIGGASFNFAGIKSYLVSQGWSRDKLYAVDF 41
>pdb|3OOS|A Chain A, The Structure Of An AlphaBETA FOLD FAMILY HYDROLASE FROM
BACILLUS Anthracis Str. Sterne
Length = 278
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 15 TWRGHKIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKA 72
T RG K Y ++GEG P+ + H + + Y VY V+L G G S+ A
Sbjct: 10 TPRG-KFEYFLKGEGPPLCVTHLYSEYNDNGNTFANPFTDHYSVYLVNLKGCGNSDSA 66
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 28 EGSPVVLIHGFGASAFHWRYNIP-ELAKRYKVYAVDLLGFGWSEKAIIEYDAMVWKDQIV 86
+G PVV HG+ SA W + L+ Y+V A D G G S++ +D + +
Sbjct: 20 DGLPVVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGRSDQPSTGHDMDTYAADVA 79
Query: 87 DFLKEIVKEPAVLVGNS 103
+ + AV +G+S
Sbjct: 80 ALTEALDLRGAVHIGHS 96
>pdb|2QXT|A Chain A, Crystal Structure Analysis Of The Bacillus Subtilis
Lipase Crystallized At Ph 4.5
pdb|2QXT|B Chain B, Crystal Structure Analysis Of The Bacillus Subtilis
Lipase Crystallized At Ph 4.5
pdb|2QXU|A Chain A, Crystal Structure Analysis Of The Bacillus Subtilis
Lipase Crystallized At Ph 5.0
pdb|2QXU|B Chain B, Crystal Structure Analysis Of The Bacillus Subtilis
Lipase Crystallized At Ph 5.0
pdb|2QXU|C Chain C, Crystal Structure Analysis Of The Bacillus Subtilis
Lipase Crystallized At Ph 5.0
pdb|2QXU|D Chain D, Crystal Structure Analysis Of The Bacillus Subtilis
Lipase Crystallized At Ph 5.0
pdb|2QXU|E Chain E, Crystal Structure Analysis Of The Bacillus Subtilis
Lipase Crystallized At Ph 5.0
pdb|2QXU|F Chain F, Crystal Structure Analysis Of The Bacillus Subtilis
Lipase Crystallized At Ph 5.0
pdb|2QXU|G Chain G, Crystal Structure Analysis Of The Bacillus Subtilis
Lipase Crystallized At Ph 5.0
pdb|2QXU|H Chain H, Crystal Structure Analysis Of The Bacillus Subtilis
Lipase Crystallized At Ph 5.0
Length = 179
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 30 SPVVLIHGFGASAFHW----RYNIPELAKRYKVYAVDL 63
+PVV++HG G ++F++ Y + + R K+YAVD
Sbjct: 2 NPVVMVHGIGGASFNFAGIKSYLVSQGWSRDKLYAVDF 39
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 16 WRGHKIHYVVQGEGSP---VVLIHGFGASAFHWRYNIPEL-AKRYKVYAVDLLGFGWSEK 71
+ G ++HYV +G + +HG + +F +R +P A +V A DL GFG S+K
Sbjct: 30 FEGLRMHYVDEGPRDAEHTFLCLHGEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRSDK 89
Query: 72 AIIE--YDAMVWKDQIVDFLKEIVKEPAVLVGNSXXXXXXXXXXXXXPDQVTGVALLNSA 129
+ Y + ++ FL + E LV P V + ++N+A
Sbjct: 90 PTDDAVYTFGFHRRSLLAFLDALQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTA 149
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 263 PNTTLVNF-QAGHCPHDEVPELVNKALMDWLST 294
P TLV F GH P + PE ++AL++ L T
Sbjct: 281 PQATLVEFPDLGHTPQIQAPERFHQALLEGLQT 313
>pdb|3D2C|A Chain A, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|B Chain B, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|C Chain C, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|D Chain D, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|E Chain E, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|F Chain F, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|G Chain G, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|H Chain H, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|I Chain I, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|J Chain J, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|K Chain K, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2C|L Chain L, Structure Of 4d3, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 28 EGSPVVLIHGFGASAFHWR----YNIPELAKRYKVYAVDL 63
E +PVV++HG G S+ ++ Y + + R K+YAVD
Sbjct: 2 EHNPVVMVHGIGGSSSNFEGIKSYLVSQGWSRDKLYAVDF 41
>pdb|3QMM|A Chain A, Structure Of 6b, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3QMM|B Chain B, Structure Of 6b, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 28 EGSPVVLIHGFGASAFHWR----YNIPELAKRYKVYAVDL 63
E +PVV++HG G S+ ++ Y + + R K+YAVD
Sbjct: 2 EHNPVVMVHGIGGSSSNFEGIKSYLVSQGWSRDKLYAVDF 41
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 18 GHKIHYV---VQGEGSPV-VLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAI 73
GH HY E + V V +HGF + + + +I + Y V +DL G G + ++
Sbjct: 1 GHMTHYKFYEANVETNQVLVFLHGFLSDSRTYHNHIEKFTDNYHVITIDLPGHGEDQSSM 60
Query: 74 IE 75
E
Sbjct: 61 DE 62
>pdb|3FCY|A Chain A, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|B Chain B, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|C Chain C, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
Length = 346
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 13 FWTWRGHKIH--YV---VQGEGSPVVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFG 67
F RG +IH Y+ +G+ ++ HG+ +++ W + +A + V A+D+ G G
Sbjct: 87 FTGVRGARIHAKYIKPKTEGKHPALIRFHGYSSNSGDWNDKLNYVAAGFTVVAMDVRGQG 146
Query: 68 WSEKAI 73
+ +
Sbjct: 147 GQSQDV 152
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 15 TWRGHKIHYVVQGEGSPVVLIHGFGASAFHWRYNIPELAKR-YKVYAVDLLGFGWSEKAI 73
T G +I Y G+G PVV IHG+ + W+ + + Y+ A D G G S
Sbjct: 5 TRDGVEIFYKDWGQGRPVVFIHGWPLNGDAWQDQLKAVVDAGYRGIAHDRRGHGHSTPVW 64
Query: 74 IEYD 77
YD
Sbjct: 65 DGYD 68
>pdb|3V48|A Chain A, Crystal Structure Of The Putative AlphaBETA HYDROLASE
RUTD FROM E.Coli
pdb|3V48|B Chain B, Crystal Structure Of The Putative AlphaBETA HYDROLASE
RUTD FROM E.Coli
Length = 268
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 32 VVLIHGFGASAFHWRYNIPELAKRYKVYAVDLLGFGWSEKAIIE 75
VVLI G G S +W + L + Y+V D G G + + E
Sbjct: 18 VVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAE 61
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|C Chain C, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|E Chain E, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|G Chain G, Yeast Mitochondrial Processing Peptidase
pdb|1HR7|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 475
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 257 RIKEFYPNTTLVNFQAGHCPHDEVPELVNKALMDWLSTVKP 297
R K + P T+ F PH++ EL K L DW ST P
Sbjct: 178 RNKFYTPENTVAAFVG--VPHEKALELTGKYLGDWQSTHPP 216
>pdb|3UOM|A Chain A, Ca2+ Complex Of Human Skeletal Calsequestrin
pdb|3UOM|B Chain B, Ca2+ Complex Of Human Skeletal Calsequestrin
pdb|3UOM|C Chain C, Ca2+ Complex Of Human Skeletal Calsequestrin
pdb|3UOM|D Chain D, Ca2+ Complex Of Human Skeletal Calsequestrin
pdb|3UOM|E Chain E, Ca2+ Complex Of Human Skeletal Calsequestrin
pdb|3UOM|F Chain F, Ca2+ Complex Of Human Skeletal Calsequestrin
Length = 362
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 52 LAKRYKVYAVDLLGFGWSEKAIIEYDAMVWKDQIVDFLKEIVKEPAVLV 100
+AK+ + VD + + + +IEYD D IV+FL +++++P L+
Sbjct: 83 VAKKLGLTEVDSM-YVFKGDEVIEYDGEFSADTIVEFLLDVLEDPVELI 130
>pdb|3D2B|A Chain A, Structure Of 2d9, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
pdb|3D2B|B Chain B, Structure Of 2d9, A Thermostable Mutant Of Bacillus
Subtilis Lipase Obtained Through Directed Evolution
Length = 181
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 28 EGSPVVLIHGFGASAFHW----RYNIPELAKRYKVYAVDL 63
E +PVV++HG G ++ ++ Y + + R K+YAVD
Sbjct: 2 EHNPVVMVHGIGGASSNFAGIKSYLVSQGWSRDKLYAVDF 41
>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|B Chain B, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|C Chain C, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|D Chain D, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 161 RIVLGFLFWQAKQPARIVSVLKSVYINSSNVDDY 194
RI+ G FW A +IVS + Y++ VD Y
Sbjct: 177 RILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLY 210
>pdb|1A8Y|A Chain A, Crystal Structure Of Calsequestrin From Rabbit Skeletal
Muscle Sarcoplasmic Reticulum At 2.4 A Resolution
pdb|3US3|A Chain A, Recombinant Rabbit Skeletal Calsequestrin-Mpd Complex
pdb|3V1W|A Chain A, Molecular Basis For Multiple Ligand Binding Of
Calsequestrin And Potential Inhibition By Caffeine And
Gallocatecin
Length = 367
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 68 WSEKAIIEYDAMVWKDQIVDFLKEIVKEPAVLV 100
+ E +IEYD D +V+FL +++++P L+
Sbjct: 98 FKEDEVIEYDGEFSADTLVEFLLDVLEDPVELI 130
>pdb|3TRQ|A Chain A, Crystal Structure Of Native Rabbit Skeletal Calsequestrin
pdb|3TRP|A Chain A, Crystal Structure Of Recombinant Rabbit Skeletal
Calsequestrin
Length = 353
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 68 WSEKAIIEYDAMVWKDQIVDFLKEIVKEPAVLV 100
+ E +IEYD D +V+FL +++++P L+
Sbjct: 98 FKEDEVIEYDGEFSADTLVEFLLDVLEDPVELI 130
>pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 161 RIVLGFLFWQAKQPARIVSVLKSVYINSSNVDDY 194
RI+ G FW A +IVS + Y++ VD Y
Sbjct: 177 RILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLY 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,187,820
Number of Sequences: 62578
Number of extensions: 302118
Number of successful extensions: 791
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 665
Number of HSP's gapped (non-prelim): 133
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)