Query 021981
Match_columns 304
No_of_seqs 206 out of 1119
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:06:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0812 SNARE protein SED5/Syn 100.0 9.9E-57 2.1E-61 403.1 30.9 276 3-304 1-311 (311)
2 KOG0809 SNARE protein TLG2/Syn 100.0 9.7E-29 2.1E-33 223.7 23.6 256 5-303 2-301 (305)
3 KOG0810 SNARE protein Syntaxin 99.9 1.2E-23 2.7E-28 195.1 24.2 196 46-282 33-268 (297)
4 KOG0811 SNARE protein PEP12/VA 99.9 4.3E-21 9.4E-26 175.4 24.1 92 211-302 171-264 (269)
5 KOG3894 SNARE protein Syntaxin 99.8 4E-17 8.6E-22 149.8 27.1 281 6-302 1-313 (316)
6 COG5325 t-SNARE complex subuni 99.8 1.3E-16 2.9E-21 144.0 23.1 72 211-282 186-257 (283)
7 COG5074 t-SNARE complex subuni 99.8 2.4E-16 5.3E-21 138.8 21.2 89 212-300 177-268 (280)
8 PF05739 SNARE: SNARE domain; 99.4 2.3E-12 4.9E-17 93.1 10.3 63 217-279 1-63 (63)
9 cd00193 t_SNARE Soluble NSF (N 99.3 1.2E-11 2.7E-16 87.7 8.4 59 216-274 2-60 (60)
10 smart00397 t_SNARE Helical reg 99.2 1E-10 2.2E-15 84.4 9.3 63 212-274 4-66 (66)
11 KOG3202 SNARE protein TLG1/Syn 98.5 1.9E-06 4.2E-11 77.8 12.9 94 202-303 141-234 (235)
12 PF11416 Sed5p: Integral membr 97.8 7.6E-06 1.6E-10 49.3 1.0 23 3-25 2-24 (29)
13 PF00957 Synaptobrevin: Synapt 97.6 0.002 4.3E-08 49.5 12.3 52 220-271 3-54 (89)
14 KOG1666 V-SNARE [Intracellular 97.5 0.036 7.7E-07 49.3 20.4 81 222-303 137-217 (220)
15 KOG3385 V-SNARE [Intracellular 97.5 0.00068 1.5E-08 54.3 8.6 81 219-300 35-115 (118)
16 PF10496 Syntaxin-18_N: SNARE- 97.4 0.00089 1.9E-08 51.4 7.7 63 6-73 1-63 (87)
17 KOG0860 Synaptobrevin/VAMP-lik 97.3 0.0052 1.1E-07 49.5 11.6 52 221-276 30-81 (116)
18 KOG0810 SNARE protein Syntaxin 97.2 0.0034 7.4E-08 58.9 10.9 211 48-302 77-291 (297)
19 KOG0811 SNARE protein PEP12/VA 96.7 0.49 1.1E-05 43.9 22.7 96 204-301 171-266 (269)
20 cd00179 SynN Syntaxin N-termin 96.6 0.072 1.6E-06 44.4 13.1 88 49-136 2-125 (151)
21 smart00503 SynN Syntaxin N-ter 96.5 0.037 8.1E-07 44.0 10.6 79 48-126 3-116 (117)
22 PF09753 Use1: Membrane fusion 96.5 0.073 1.6E-06 48.8 13.6 75 218-296 168-242 (251)
23 PF00804 Syntaxin: Syntaxin; 96.4 0.021 4.6E-07 44.1 7.8 72 48-119 2-103 (103)
24 COG5325 t-SNARE complex subuni 96.2 0.091 2E-06 48.4 11.8 87 208-298 190-276 (283)
25 PF03908 Sec20: Sec20; InterP 95.4 0.54 1.2E-05 36.3 11.9 61 241-302 29-89 (92)
26 COG5074 t-SNARE complex subuni 94.6 0.44 9.5E-06 43.1 10.5 35 99-133 100-134 (280)
27 KOG2678 Predicted membrane pro 92.6 3.1 6.6E-05 37.5 12.2 64 216-282 154-217 (244)
28 KOG3065 SNAP-25 (synaptosome-a 92.6 0.64 1.4E-05 43.3 8.3 57 217-273 215-271 (273)
29 KOG3251 Golgi SNAP receptor co 91.3 10 0.00023 33.9 22.5 75 50-134 30-104 (213)
30 KOG3208 SNARE protein GS28 [In 91.0 11 0.00025 33.8 19.8 58 243-300 172-229 (231)
31 KOG0809 SNARE protein TLG2/Syn 89.6 18 0.00039 34.0 16.0 88 209-300 214-301 (305)
32 PF10779 XhlA: Haemolysin XhlA 88.3 8.2 0.00018 28.3 9.8 52 247-301 19-70 (71)
33 PF10267 Tmemb_cc2: Predicted 86.7 34 0.00073 33.7 17.0 52 241-292 291-347 (395)
34 PF05478 Prominin: Prominin; 85.8 9.5 0.00021 40.9 12.0 64 221-290 358-421 (806)
35 PF00957 Synaptobrevin: Synapt 85.3 14 0.00031 27.9 11.6 15 214-228 25-39 (89)
36 KOG3850 Predicted membrane pro 84.1 33 0.00071 33.5 13.3 49 223-271 309-358 (455)
37 PF09889 DUF2116: Uncharacteri 84.1 1.5 3.2E-05 31.3 3.4 15 276-290 33-47 (59)
38 PF09889 DUF2116: Uncharacteri 83.8 1.7 3.7E-05 31.0 3.6 28 274-301 28-55 (59)
39 KOG0860 Synaptobrevin/VAMP-lik 83.8 22 0.00047 28.9 10.4 21 252-273 65-85 (116)
40 PF03904 DUF334: Domain of unk 83.2 35 0.00077 30.9 13.0 88 213-302 64-168 (230)
41 PF12352 V-SNARE_C: Snare regi 83.1 14 0.00031 26.2 10.2 54 221-274 9-62 (66)
42 KOG0812 SNARE protein SED5/Syn 81.3 35 0.00077 32.0 12.1 57 215-271 229-285 (311)
43 KOG0859 Synaptobrevin/VAMP-lik 76.6 9.5 0.00021 33.8 6.6 60 220-283 125-184 (217)
44 PF04102 SlyX: SlyX; InterPro 73.8 24 0.00052 25.7 7.2 49 220-268 4-52 (69)
45 PF06143 Baculo_11_kDa: Baculo 71.6 6.8 0.00015 29.9 3.9 10 268-277 19-28 (84)
46 PHA03164 hypothetical protein; 69.0 6.6 0.00014 29.4 3.3 25 279-303 56-80 (88)
47 PRK02119 hypothetical protein; 67.9 47 0.001 24.6 8.1 48 219-266 8-55 (73)
48 PRK00295 hypothetical protein; 66.9 47 0.001 24.2 7.9 47 221-267 6-52 (68)
49 PF02346 Vac_Fusion: Chordopox 65.5 40 0.00086 23.9 6.5 44 221-264 2-45 (57)
50 smart00397 t_SNARE Helical reg 64.6 43 0.00092 22.9 8.5 58 208-265 7-64 (66)
51 PF14523 Syntaxin_2: Syntaxin- 64.4 62 0.0013 24.7 11.5 26 107-132 72-97 (102)
52 PF14992 TMCO5: TMCO5 family 64.3 1.3E+02 0.0028 28.3 11.9 54 215-268 125-178 (280)
53 PRK00736 hypothetical protein; 63.7 54 0.0012 23.8 7.8 46 221-266 6-51 (68)
54 PF05957 DUF883: Bacterial pro 63.6 64 0.0014 24.6 11.5 66 225-290 7-81 (94)
55 PRK02793 phi X174 lysis protei 63.3 58 0.0012 24.0 7.8 47 220-266 8-54 (72)
56 cd00193 t_SNARE Soluble NSF (N 62.1 45 0.00098 22.4 8.2 55 224-278 3-57 (60)
57 PF12911 OppC_N: N-terminal TM 62.0 19 0.00041 24.6 4.5 17 271-287 5-21 (56)
58 PRK04325 hypothetical protein; 61.5 64 0.0014 23.9 8.2 45 222-266 11-55 (74)
59 PF09753 Use1: Membrane fusion 61.0 84 0.0018 28.6 9.8 81 218-301 160-244 (251)
60 KOG3202 SNARE protein TLG1/Syn 60.6 1E+02 0.0022 28.2 10.0 32 238-269 177-208 (235)
61 PHA02844 putative transmembran 59.9 12 0.00026 27.9 3.1 10 280-289 45-54 (75)
62 PHA03240 envelope glycoprotein 59.9 7.9 0.00017 34.7 2.6 9 282-290 214-222 (258)
63 PRK10299 PhoPQ regulatory prot 59.8 12 0.00025 25.3 2.8 17 279-295 2-18 (47)
64 PHA02675 ORF104 fusion protein 59.4 58 0.0013 24.9 6.8 41 224-264 34-74 (90)
65 PHA02692 hypothetical protein; 58.4 13 0.00029 27.3 3.2 11 279-289 41-51 (70)
66 KOG3065 SNAP-25 (synaptosome-a 57.1 84 0.0018 29.3 9.1 44 230-273 89-132 (273)
67 PRK04406 hypothetical protein; 56.4 81 0.0017 23.5 8.5 47 220-266 11-57 (75)
68 PHA02975 hypothetical protein; 55.8 16 0.00035 26.7 3.2 11 279-289 40-50 (69)
69 PHA02819 hypothetical protein; 54.9 16 0.00035 26.9 3.1 10 280-289 43-52 (71)
70 PF04906 Tweety: Tweety; Inte 54.5 37 0.00081 33.4 6.7 13 224-236 122-134 (406)
71 PHA03054 IMV membrane protein; 53.3 15 0.00032 27.1 2.7 10 280-289 45-54 (72)
72 KOG2678 Predicted membrane pro 52.4 1.8E+02 0.004 26.4 10.5 70 224-296 155-228 (244)
73 PF11166 DUF2951: Protein of u 50.1 1.2E+02 0.0026 23.7 11.3 42 221-262 12-53 (98)
74 smart00502 BBC B-Box C-termina 48.5 1.3E+02 0.0027 23.3 8.5 53 225-277 37-90 (127)
75 PF05961 Chordopox_A13L: Chord 48.3 23 0.00051 25.8 3.0 18 285-302 6-23 (68)
76 PHA03049 IMV membrane protein; 47.3 25 0.00054 25.6 3.0 18 285-302 6-23 (68)
77 KOG0859 Synaptobrevin/VAMP-lik 46.6 48 0.001 29.5 5.3 6 203-208 113-118 (217)
78 PF06024 DUF912: Nucleopolyhed 46.0 17 0.00038 28.5 2.4 7 294-300 74-80 (101)
79 PF07889 DUF1664: Protein of u 44.4 99 0.0022 25.4 6.6 35 221-255 90-124 (126)
80 PHA02849 putative transmembran 44.2 29 0.00062 26.1 3.1 20 284-303 18-37 (82)
81 cd07912 Tweety_N N-terminal do 43.8 2.1E+02 0.0046 28.4 10.0 11 227-237 145-155 (418)
82 PRK14710 hypothetical protein; 43.6 27 0.00059 25.8 2.8 20 283-302 10-29 (86)
83 KOG0862 Synaptobrevin/VAMP-lik 42.2 2.4E+02 0.0053 25.4 9.2 8 246-253 160-167 (216)
84 PRK14762 membrane protein; Pro 41.5 41 0.00088 19.7 2.7 7 283-289 6-12 (27)
85 PF01519 DUF16: Protein of unk 41.5 1.8E+02 0.0039 23.1 7.9 39 221-259 54-92 (102)
86 PF05399 EVI2A: Ectropic viral 41.0 30 0.00065 31.0 3.2 11 281-291 126-136 (227)
87 PF07798 DUF1640: Protein of u 40.3 2.4E+02 0.0052 24.2 12.7 26 90-115 18-43 (177)
88 PF00523 Fusion_gly: Fusion gl 40.0 24 0.00052 35.7 2.8 29 91-119 170-198 (490)
89 PRK11466 hybrid sensory histid 40.0 3.2E+02 0.0069 29.2 11.6 26 263-288 314-339 (914)
90 PRK09793 methyl-accepting prot 40.0 3E+02 0.0066 27.7 10.9 53 213-265 429-481 (533)
91 PHA03164 hypothetical protein; 39.5 24 0.00052 26.4 2.0 24 280-303 54-77 (88)
92 PF00482 T2SF: Type II secreti 39.2 58 0.0013 24.7 4.5 7 224-230 47-53 (124)
93 PF15102 TMEM154: TMEM154 prot 38.9 15 0.00032 31.1 1.0 21 283-303 58-78 (146)
94 PRK11637 AmiB activator; Provi 38.3 3.9E+02 0.0086 26.2 13.0 63 213-275 68-130 (428)
95 COG4068 Uncharacterized protei 38.2 42 0.00092 23.9 3.0 7 270-276 31-37 (64)
96 PF00523 Fusion_gly: Fusion gl 38.1 53 0.0012 33.2 4.9 22 252-273 442-463 (490)
97 PRK15041 methyl-accepting chem 38.0 3.4E+02 0.0073 27.6 10.9 54 212-265 432-485 (554)
98 PRK10884 SH3 domain-containing 38.0 2.9E+02 0.0063 24.6 12.0 40 234-273 118-157 (206)
99 COG4942 Membrane-bound metallo 37.5 3.7E+02 0.0079 26.8 10.4 59 214-272 39-97 (420)
100 PHA02414 hypothetical protein 37.2 2.1E+02 0.0045 22.6 7.8 45 221-265 30-74 (111)
101 PF11945 WASH_WAHD: WAHD domai 35.9 1.7E+02 0.0037 27.6 7.7 46 219-267 24-69 (297)
102 PRK15048 methyl-accepting chem 35.9 4.2E+02 0.009 26.7 11.1 53 213-265 431-483 (553)
103 PF14523 Syntaxin_2: Syntaxin- 35.8 1.9E+02 0.0042 21.9 9.9 38 91-128 63-100 (102)
104 PRK00846 hypothetical protein; 35.8 1.9E+02 0.0041 21.7 8.3 47 221-267 14-60 (77)
105 PRK10573 type IV pilin biogene 35.8 1.3E+02 0.0028 29.2 7.1 39 225-263 111-149 (399)
106 PF11190 DUF2976: Protein of u 35.6 1.7E+02 0.0036 22.6 6.2 44 260-303 36-80 (87)
107 COG1459 PulF Type II secretory 35.5 1.2E+02 0.0026 29.9 6.8 37 229-265 114-150 (397)
108 PF11221 Med21: Subunit 21 of 34.9 2.3E+02 0.0049 23.5 7.6 27 46-72 62-88 (144)
109 PF06422 PDR_CDR: CDR ABC tran 33.5 49 0.0011 26.0 3.1 18 267-284 33-50 (103)
110 KOG0570 Transcriptional coacti 33.5 3.2E+02 0.0069 24.4 8.3 54 224-277 103-169 (223)
111 PF05377 FlaC_arch: Flagella a 32.7 1.8E+02 0.0038 20.5 6.0 22 216-237 24-45 (55)
112 PF12575 DUF3753: Protein of u 32.7 53 0.0012 24.3 2.9 13 283-295 51-63 (72)
113 PHA02844 putative transmembran 32.1 56 0.0012 24.3 3.0 14 283-296 45-58 (75)
114 PF10717 ODV-E18: Occlusion-de 31.3 50 0.0011 25.2 2.6 16 284-299 29-44 (85)
115 PF04740 LXG: LXG domain of WX 31.3 3.4E+02 0.0074 23.3 18.6 72 48-119 5-77 (204)
116 PF09577 Spore_YpjB: Sporulati 31.1 1.5E+02 0.0032 27.1 6.2 16 286-301 203-218 (232)
117 PF00015 MCPsignal: Methyl-acc 31.1 3.3E+02 0.0071 23.1 11.3 57 212-268 127-183 (213)
118 PF05739 SNARE: SNARE domain; 31.0 1.8E+02 0.0038 20.0 9.9 55 214-268 5-59 (63)
119 PF01102 Glycophorin_A: Glycop 30.8 57 0.0012 26.7 3.2 7 296-302 80-86 (122)
120 PF15106 TMEM156: TMEM156 prot 30.8 52 0.0011 29.5 3.1 13 290-302 183-195 (226)
121 PF10046 BLOC1_2: Biogenesis o 30.4 2.6E+02 0.0056 21.7 9.8 56 203-262 21-80 (99)
122 PRK10381 LPS O-antigen length 30.2 57 0.0012 31.8 3.6 27 275-301 33-59 (377)
123 PRK10935 nitrate/nitrite senso 30.1 3.5E+02 0.0075 26.9 9.4 7 283-289 152-158 (565)
124 PHA02657 hypothetical protein; 29.3 67 0.0015 24.6 3.0 17 286-302 30-46 (95)
125 COG4640 Predicted membrane pro 29.3 81 0.0018 31.0 4.3 8 266-273 31-38 (465)
126 PF05399 EVI2A: Ectropic viral 29.3 49 0.0011 29.7 2.7 16 285-300 133-149 (227)
127 PHA02650 hypothetical protein; 29.1 72 0.0016 24.1 3.1 16 281-296 44-59 (81)
128 TIGR01195 oadG_fam sodium pump 29.1 56 0.0012 24.7 2.7 10 287-296 11-20 (82)
129 PF04639 Baculo_E56: Baculovir 29.1 34 0.00073 32.1 1.7 18 285-302 281-298 (305)
130 PF02532 PsbI: Photosystem II 28.8 96 0.0021 19.8 3.2 11 290-300 10-20 (36)
131 PRK14750 kdpF potassium-transp 28.4 87 0.0019 19.0 2.8 11 292-302 11-21 (29)
132 COG4499 Predicted membrane pro 28.3 1E+02 0.0022 30.3 4.8 11 277-287 211-221 (434)
133 PF07127 Nodulin_late: Late no 28.2 51 0.0011 22.7 2.1 17 285-301 4-20 (54)
134 PF05546 She9_MDM33: She9 / Md 28.0 4.4E+02 0.0096 23.6 8.7 30 53-82 9-40 (207)
135 PHA03240 envelope glycoprotein 27.9 57 0.0012 29.4 2.8 18 280-297 209-226 (258)
136 PF14812 PBP1_TM: Transmembran 27.9 3.5 7.6E-05 31.3 -4.0 9 278-286 62-70 (81)
137 TIGR02120 GspF general secreti 27.2 3E+02 0.0066 26.5 8.1 31 235-265 325-355 (399)
138 KOG2546 Abl interactor ABI-1, 26.8 2.6E+02 0.0056 27.9 7.3 54 212-265 47-100 (483)
139 PHA03054 IMV membrane protein; 26.0 91 0.002 23.0 3.1 20 281-300 43-62 (72)
140 TIGR02120 GspF general secreti 25.8 2.3E+02 0.0051 27.3 7.1 38 229-266 117-154 (399)
141 PF14715 FixP_N: N-terminal do 25.6 93 0.002 21.4 3.0 20 282-302 22-41 (51)
142 PF11026 DUF2721: Protein of u 25.4 3.5E+02 0.0075 22.0 7.0 17 268-284 49-65 (130)
143 PHA02819 hypothetical protein; 25.2 98 0.0021 22.8 3.2 19 281-299 41-59 (71)
144 PTZ00046 rifin; Provisional 25.1 3.3E+02 0.0073 26.4 7.7 21 283-303 316-336 (358)
145 PF13314 DUF4083: Domain of un 24.7 1E+02 0.0022 21.9 3.1 11 292-302 16-26 (58)
146 PF13198 DUF4014: Protein of u 24.6 80 0.0017 23.3 2.6 15 272-286 6-20 (72)
147 KOG1666 V-SNARE [Intracellular 24.4 1.8E+02 0.0038 26.3 5.3 23 62-84 38-60 (220)
148 TIGR03715 KxYKxGKxW KxYKxGKxW 24.4 56 0.0012 19.5 1.6 15 277-291 7-21 (29)
149 PHA02955 hypothetical protein; 24.3 78 0.0017 28.4 3.0 19 280-298 178-196 (213)
150 PF04210 MtrG: Tetrahydrometha 24.3 3E+02 0.0064 20.3 7.3 14 260-273 24-37 (70)
151 PF09125 COX2-transmemb: Cytoc 24.0 90 0.002 20.0 2.4 8 282-289 15-22 (38)
152 COG4218 MtrF Tetrahydromethano 23.6 2E+02 0.0043 21.2 4.5 16 249-264 18-33 (73)
153 smart00283 MA Methyl-accepting 23.5 4.9E+02 0.011 22.6 9.3 58 219-276 3-60 (262)
154 PF10661 EssA: WXG100 protein 23.4 88 0.0019 26.3 3.1 26 279-304 114-139 (145)
155 TIGR02833 spore_III_AB stage I 23.0 4.8E+02 0.01 22.3 7.9 13 229-241 107-119 (170)
156 PF04728 LPP: Lipoprotein leuc 22.8 2.8E+02 0.0061 19.5 7.1 29 249-277 18-46 (56)
157 TIGR01477 RIFIN variant surfac 22.6 4.1E+02 0.0088 25.8 7.7 21 283-303 311-331 (353)
158 PRK10856 cytoskeletal protein 22.5 79 0.0017 30.3 3.0 17 277-293 106-122 (331)
159 PF13253 DUF4044: Protein of u 22.4 71 0.0015 20.3 1.8 18 285-302 12-29 (35)
160 PF07432 Hc1: Histone H1-like 22.4 3.9E+02 0.0085 21.7 6.4 45 232-276 2-46 (123)
161 PF00517 GP41: Retroviral enve 22.3 2.2E+02 0.0047 25.3 5.6 19 214-232 102-120 (204)
162 PRK08307 stage III sporulation 22.3 4.9E+02 0.011 22.2 7.7 13 229-241 108-120 (171)
163 COG4537 ComGC Competence prote 22.3 78 0.0017 25.1 2.3 25 275-299 8-33 (107)
164 PF06198 DUF999: Protein of un 22.2 45 0.00098 26.8 1.1 21 277-297 81-101 (143)
165 PF09548 Spore_III_AB: Stage I 21.9 2.7E+02 0.0059 23.7 6.0 37 230-268 108-144 (170)
166 PF02009 Rifin_STEVOR: Rifin/s 21.8 3E+02 0.0064 26.1 6.6 24 107-130 36-59 (299)
167 COG5415 Predicted integral mem 21.8 5E+02 0.011 23.5 7.5 28 246-273 13-40 (251)
168 PRK11637 AmiB activator; Provi 21.7 7.6E+02 0.017 24.1 11.6 66 212-277 60-125 (428)
169 PRK10600 nitrate/nitrite senso 21.5 3.3E+02 0.0071 27.5 7.5 46 231-276 179-224 (569)
170 PRK10132 hypothetical protein; 21.4 4.2E+02 0.0092 21.1 11.5 18 274-291 78-95 (108)
171 COG0840 Tar Methyl-accepting c 21.4 7E+02 0.015 23.5 11.0 54 215-268 326-379 (408)
172 PF06682 DUF1183: Protein of u 21.4 84 0.0018 30.0 2.9 15 289-303 163-177 (318)
173 TIGR03745 conj_TIGR03745 integ 21.3 2.2E+02 0.0048 22.6 4.7 43 260-302 52-95 (104)
174 PF03904 DUF334: Domain of unk 21.3 6.3E+02 0.014 23.0 11.4 34 263-299 135-168 (230)
175 PF00895 ATP-synt_8: ATP synth 21.1 1.3E+02 0.0028 20.0 3.1 8 283-290 9-16 (54)
176 COG5346 Predicted membrane pro 20.7 4.8E+02 0.011 21.5 6.9 8 285-292 93-100 (136)
177 PF15188 CCDC-167: Coiled-coil 20.7 3.1E+02 0.0068 21.0 5.3 8 221-228 20-27 (85)
178 KOG3385 V-SNARE [Intracellular 20.6 4.7E+02 0.01 21.3 7.8 79 224-302 33-114 (118)
179 PHA03046 Hypothetical protein; 20.5 5E+02 0.011 21.6 7.2 53 212-264 76-128 (142)
180 COG2966 Uncharacterized conser 20.4 1.7E+02 0.0037 26.9 4.6 35 257-291 99-134 (250)
181 COG3462 Predicted membrane pro 20.2 1.2E+02 0.0027 24.3 3.1 21 282-302 49-70 (117)
182 COG1579 Zn-ribbon protein, pos 20.2 6.8E+02 0.015 22.9 9.7 60 214-273 97-156 (239)
183 COG4238 Murein lipoprotein [Ce 20.2 3.8E+02 0.0083 20.1 6.3 31 247-277 38-68 (78)
184 PF11239 DUF3040: Protein of u 20.1 1.4E+02 0.003 22.3 3.3 17 249-265 10-26 (82)
185 PF15188 CCDC-167: Coiled-coil 20.1 86 0.0019 24.0 2.2 7 281-287 66-72 (85)
186 PF11464 Rbsn: Rabenosyn Rab b 20.1 2.7E+02 0.0058 18.5 4.2 32 204-235 4-37 (42)
No 1
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.9e-57 Score=403.07 Aligned_cols=276 Identities=38% Similarity=0.566 Sum_probs=214.0
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 021981 3 SPYRDRTAEFRSLSQTLKKIGGATTAVDQPNNSFVSPKPPNPASSRSEFNKKASRIGLGIHEASQKIARLAKY------- 75 (304)
Q Consensus 3 ~~~~DRT~eF~s~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~seF~~~A~~I~~~i~~~~~kL~kL~~L------- 75 (304)
|+++|||.||++||++++.|++..+ .+. . .+-+....++.+||++.|+.||++|+.|.+||+||+.|
T Consensus 1 m~~rDRT~Ef~~~~~s~~~r~~~~~-~~~--~---~p~~~~~~~~~seF~~~A~~Ig~~is~T~~kl~kLa~lAKrks~f 74 (311)
T KOG0812|consen 1 MSFRDRTSEFQAAVKSLKKRNATRG-VNQ--A---DPGADKTVSQGSEFNKKASRIGKEISQTGAKLEKLAQLAKRKSLF 74 (311)
T ss_pred CCcchhhHHHHHHHHHHHHHhhccc-ccc--C---CCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 6899999999999999999974332 111 1 11234457789999999999999999999999999999
Q ss_pred ---------------------------HHHHHHHhhhhCCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 76 ---------------------------LQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKA 128 (304)
Q Consensus 76 ---------------------------Lq~l~~~~~~~~~~~~q~~~h~~~Vv~~L~~~L~~~s~~Fk~vl~~r~~~~k~ 128 (304)
||+|.+..+ ..++.|...|+++||..|+++|++++++|++|||.|++++|+
T Consensus 75 ~Dr~VeI~eLT~iikqdi~sln~~i~~Lqei~~~~g--n~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka 152 (311)
T KOG0812|consen 75 DDRPVEIQELTFIIKQDITSLNSQIAQLQEIVKANG--NLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKA 152 (311)
T ss_pred cCcchhhHHHHHHHhcchHHHHHHHHHHHHHHHHhc--cccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 777774433 223477899999999999999999999999999999999999
Q ss_pred HHhhhhhhcccccCCCcc-ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHHhhh
Q 021981 129 HESRKQIFSANALRDSPF-RQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQV 207 (304)
Q Consensus 129 ~~eRr~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ql 207 (304)
.+.|+++|+....+.++. .++.+ .-+.|+.. +. ++. ...+..+...+-.| .+.. .++||++
T Consensus 153 ~k~R~dkfs~~~a~~~a~p~~n~~--a~~~~~~~------l~-----~~~-~~~sq~~~~ln~gd-~~~~---qqqQm~l 214 (311)
T KOG0812|consen 153 VKNRRDKFSASYASLNANPVSNSA--ARLHPLKL------LV-----DPK-DEASQDVESLNMGD-SSNP---QQQQMAL 214 (311)
T ss_pred HhhHHHHhccccCCCCCcccCccc--ccCCchhh------hc-----Cch-hhcccccccccccC-CCCC---HHHHHHH
Confidence 999999998764332110 01000 00001000 00 000 00000000000011 1111 2567888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHH
Q 021981 208 VPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIK 287 (304)
Q Consensus 208 ~e~~~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r~~~~~ 287 (304)
+++.++|+++|.+++++||++|.|||+||.+||+||.+|||+|.|||+||+++..||++|+.+|.||+++.++|||+|++
T Consensus 215 l~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvk 294 (311)
T KOG0812|consen 215 LDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVK 294 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC
Q 021981 288 IFAVIIFFLTVFMFFVA 304 (304)
Q Consensus 288 i~~iliv~~~~~~~~~a 304 (304)
||+|||||||+|++|+|
T Consensus 295 iF~i~ivFflvfvlf~~ 311 (311)
T KOG0812|consen 295 IFGILIVFFLVFVLFLA 311 (311)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999999986
No 2
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.7e-29 Score=223.74 Aligned_cols=256 Identities=16% Similarity=0.191 Sum_probs=188.6
Q ss_pred CCCchHHHHHHHHHHHhhcCCCCCCCC--C------CCCCCCC---CCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 5 YRDRTAEFRSLSQTLKKIGGATTAVDQ--P------NNSFVSP---KPPNPASSRSEFNKKASRIGLGIHEASQKIARLA 73 (304)
Q Consensus 5 ~~DRT~eF~s~v~s~~~~~~~~~~~~~--~------~~~~~~~---~~~~~~~~~seF~~~A~~I~~~i~~~~~kL~kL~ 73 (304)
.||||..|..+.+++..-....+...+ + .+-.... +.....+-..-|...+.+|...+.+++.++.+|.
T Consensus 2 tRnrT~lF~~~Rn~~~~~r~~~~~~~~~d~~~e~~~~lv~~~~~~~~~~~~d~lpP~wvd~~~ev~~~l~rvrrk~~eLg 81 (305)
T KOG0809|consen 2 TRNRTELFLLYRNNASHNRQPLGDRSGDDPVIEMATSLVNEAEEGKTVSDEDGLPPAWVDVAEEVDYYLSRVRRKIDELG 81 (305)
T ss_pred cchHHHHHHHHHhhhhhhccccccccCcchhHHhHhccccchhcCCccccccCCCCcccchHHHHHHHHHHHHHHHHHHH
Confidence 699999999999998763322220000 0 0000000 0001011133489999999999999999999999
Q ss_pred HH--------------------------HHHHHHHhhhh-------CCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 021981 74 KY--------------------------LQTLQNLEIVE-------GNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLT 120 (304)
Q Consensus 74 ~L--------------------------Lq~l~~~~~~~-------~~~~~q~~~h~~~Vv~~L~~~L~~~s~~Fk~vl~ 120 (304)
.+ .|.|.+|.+.- +..+....-...|+...+..+|+.++..|+..+.
T Consensus 82 k~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs 161 (305)
T KOG0809|consen 82 KAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSERLLRKNAQGYLALQLQTLSREFRGLQS 161 (305)
T ss_pred HHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 55666665521 1124466667779999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchhhh
Q 021981 121 TRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHME 200 (304)
Q Consensus 121 ~r~~~~k~~~eRr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (304)
.|.++++.++++-..|..+..+. .. .| ++.+..+ ...
T Consensus 162 ~YLK~l~~~ee~~~~~e~~~~~~---~~--------------------------~~------------dd~d~~~--~~~ 198 (305)
T KOG0809|consen 162 KYLKRLRNREENSQEYEDSLDNT---VD--------------------------LP------------DDEDFSD--RTF 198 (305)
T ss_pred HHHHHhhchhhcccchhhhcccc---cc--------------------------Cc------------chhhhhh--hhH
Confidence 99999999998887776533210 00 00 0001111 111
Q ss_pred hhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021981 201 MSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISS 280 (304)
Q Consensus 201 ~~~q~ql~e~~~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~ 280 (304)
+++|+++++.++.++.+|++||.+|-.+|.||++||+||+.||.+||..|||||+||+++..+|+.|.+||.||-.++++
T Consensus 199 qe~ql~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~ 278 (305)
T KOG0809|consen 199 QEQQLMLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKR 278 (305)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhc
Confidence 24566667778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHh
Q 021981 281 NRWLMIKIFAVIIFFLTVFMFFV 303 (304)
Q Consensus 281 ~r~~~~~i~~iliv~~~~~~~~~ 303 (304)
+++|+|+++++++||++++++.+
T Consensus 279 ~~k~~~i~~L~l~ii~llvllil 301 (305)
T KOG0809|consen 279 NKKMKVILMLTLLIIALLVLLIL 301 (305)
T ss_pred CCceEehHHHHHHHHHHHHHHHh
Confidence 99888887777777776666543
No 3
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.2e-23 Score=195.09 Aligned_cols=196 Identities=20% Similarity=0.271 Sum_probs=139.6
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHhhhhC--C
Q 021981 46 SSRSEFNKKASRIGLGIHEASQKIARLAKY-----------------------------------LQTLQNLEIVEG--N 88 (304)
Q Consensus 46 ~~~seF~~~A~~I~~~i~~~~~kL~kL~~L-----------------------------------Lq~l~~~~~~~~--~ 88 (304)
...++|....+.|..+|.++...+++|.++ |..+.+.+.... +
T Consensus 33 ~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~ 112 (297)
T KOG0810|consen 33 SNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQN 112 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 568999999999999999999999998888 333333332211 1
Q ss_pred CchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCccccCCCCCCCCCCCCCCCCCCCC
Q 021981 89 YSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASES 168 (304)
Q Consensus 89 ~~~q~~~h~~~Vv~~L~~~L~~~s~~Fk~vl~~r~~~~k~~~eRr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (304)
.......++.+-...+..+|.+++.+|..+...|.+..|.+-.|+. |..++... .
T Consensus 113 ~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql-~i~~~~~~---------------~--------- 167 (297)
T KOG0810|consen 113 RSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQL-FIVGGEET---------------T--------- 167 (297)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhCCCcC---------------C---------
Confidence 2233334444555566699999999999999999999999996664 33332110 0
Q ss_pred CCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHHhh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 169 SQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQ---VVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQ 245 (304)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~q---l~e~~~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~ 245 (304)
++.+. .+ ++.+. .+..++--++ ...+-..++++||++|..||++|.||++||.|||+||..
T Consensus 168 --de~ie--------~~-----ie~g~-~~~f~~~~i~~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~ 231 (297)
T KOG0810|consen 168 --DEEIE--------EM-----IESGG-SEVFTQKAIQDRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVES 231 (297)
T ss_pred --hHHHH--------HH-----HHCCC-hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00 00000 0001111111 112236899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 021981 246 QGELAIRIDDNMDESLANVEGARNALLRHLNQISSNR 282 (304)
Q Consensus 246 Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r 282 (304)
||||||+||.||++|.+||+.|..++.+|.+++++.|
T Consensus 232 QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaR 268 (297)
T KOG0810|consen 232 QGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKAR 268 (297)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998766654
No 4
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4.3e-21 Score=175.38 Aligned_cols=92 Identities=21% Similarity=0.321 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--chhHHHH
Q 021981 211 QENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSN--RWLMIKI 288 (304)
Q Consensus 211 ~~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~--r~~~~~i 288 (304)
+...+++|.++|++||..|.||++||+||+.||++||++||.||+||+.|..||+.|+.+|.||.++++++ +.|++++
T Consensus 171 ~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~ 250 (269)
T KOG0811|consen 171 QLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLL 250 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhH
Confidence 56788999999999999999999999999999999999999999999999999999999999998865443 3366666
Q ss_pred HHHHHHHHHHHHHH
Q 021981 289 FAVIIFFLTVFMFF 302 (304)
Q Consensus 289 ~~iliv~~~~~~~~ 302 (304)
|++++.++++++++
T Consensus 251 v~~~v~lii~l~i~ 264 (269)
T KOG0811|consen 251 VGGPVGLIIGLIIA 264 (269)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666555544
No 5
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=4e-17 Score=149.83 Aligned_cols=281 Identities=14% Similarity=0.104 Sum_probs=184.2
Q ss_pred CCchHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q 021981 6 RDRTAEFRSLSQTLKKIGGATTAVDQPNNSFVSPKPPNPASSRSEFNKKASRIGLGIHEASQKIARLAKY---------- 75 (304)
Q Consensus 6 ~DRT~eF~s~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~seF~~~A~~I~~~i~~~~~kL~kL~~L---------- 75 (304)
+|+|..|+..|++++..+++..... ..+... ...++.++..|...|.++-+.|+++..+|-+...-
T Consensus 1 ~d~t~~fk~sv~~i~~~~k~~~~~~---~~~~~~-~~~~~~~~~~f~~~a~~~~~~i~~l~~fl~e~rk~y~d~~mtd~e 76 (316)
T KOG3894|consen 1 SDITPIFKASVATVDDARKAQNGGD---AHVERK-QEDFPNPKEDFEKFADEVIKEIARLRKFLLEHRKDYKDFRMTDAE 76 (316)
T ss_pred CcchHHHHHHHHHHHHhccccccCC---CCcchh-hcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHH
Confidence 6999999999999999876643111 111122 44567789999999999999999999998875443
Q ss_pred ------------------HHHHHHHhhhhCCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 021981 76 ------------------LQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFS 137 (304)
Q Consensus 76 ------------------Lq~l~~~~~~~~~~~~q~~~h~~~Vv~~L~~~L~~~s~~Fk~vl~~r~~~~k~~~eRr~~f~ 137 (304)
|..+.+..... .+.+...|++.|...+...+++..+.+...--.|.++.-... |-..+.
T Consensus 77 kd~id~e~~~fi~~~t~~~~~l~~~~~~~--h~~~~~~~~~~i~~~l~~l~k~~~~~~s~~~k~rV~~~l~~~-rl~vl~ 153 (316)
T KOG3894|consen 77 KDEIDQECRLFIQQYTEKIEQLINYEMEE--HSLQLERFQDAVLRWLGILLKRNENTYSVQHKQRVENELSEK-RLSVLA 153 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-HHhhHh
Confidence 33333332222 467899999999999999999999999888888887666555 443332
Q ss_pred ccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHHhhhhhhh----HH
Q 021981 138 ANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQ----EN 213 (304)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ql~e~~----~~ 213 (304)
.-....-+........-.+ +..+..+ .+ ....|......++.+-++...+..+- .+.+|+||++.+ ..
T Consensus 154 ~~~~~~~~s~~~~~~~~~~-~~~~~en---~~-~~~~~~~~s~~~~e~~~~~~~~~e~~---~s~e~~Q~~E~En~~l~~ 225 (316)
T KOG3894|consen 154 CLDIKYVESKFQTIQNERL-SKDNKEN---TL-SERADDNRSLADSELGQDEEKHYEDP---LSKEQVQLLETENQRLLN 225 (316)
T ss_pred hcchhhccCchhhhhhhcc-hhhhHHH---HH-hhcchhhhcccchhhcCcccccCCcc---ccHHHHHHHHHHHHHHHH
Confidence 2110000000000000000 0000000 00 00000000000111111111111111 233678888764 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHH
Q 021981 214 YSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVII 293 (304)
Q Consensus 214 ~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r~~~~~i~~ili 293 (304)
.+++-.+++++||+.+.|+..|..-|+++|.+|...||.|-+++..++.||++||++|+||.....+.|.| +.++++++
T Consensus 226 ~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~-~lf~llvl 304 (316)
T KOG3894|consen 226 ELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVF-LLFFLLVL 304 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhH-HHHHHHHH
Confidence 66777899999999999999999999999999999999999999999999999999999999987777766 35566677
Q ss_pred HHHHHHHHH
Q 021981 294 FFLTVFMFF 302 (304)
Q Consensus 294 v~~~~~~~~ 302 (304)
-|+++|+.|
T Consensus 305 sf~lLFldw 313 (316)
T KOG3894|consen 305 SFSLLFLDW 313 (316)
T ss_pred HHHHHHHhh
Confidence 888888876
No 6
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.77 E-value=1.3e-16 Score=143.97 Aligned_cols=72 Identities=29% Similarity=0.416 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 021981 211 QENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNR 282 (304)
Q Consensus 211 ~~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r 282 (304)
+...+++|.++|.+|++.|.||++||.||+++|.+||+.|||||+|++++..|.+.|++||.||-.++++.+
T Consensus 186 qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~ 257 (283)
T COG5325 186 QQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTK 257 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhc
Confidence 344589999999999999999999999999999999999999999999999999999999999977654433
No 7
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.75 E-value=2.4e-16 Score=138.77 Aligned_cols=89 Identities=22% Similarity=0.310 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCchhHHHH
Q 021981 212 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQ---ISSNRWLMIKI 288 (304)
Q Consensus 212 ~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~---~~~~r~~~~~i 288 (304)
..++++|+.+|..||++|.||.+||+||++||.+|.|+||-|+.|++++..||++|+.++.+|.++ .+++||.|+.|
T Consensus 177 L~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI 256 (280)
T COG5074 177 LAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGI 256 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhh
Confidence 578899999999999999999999999999999999999999999999999999999999999874 45678877766
Q ss_pred HHHHHHHHHHHH
Q 021981 289 FAVIIFFLTVFM 300 (304)
Q Consensus 289 ~~iliv~~~~~~ 300 (304)
++++|+|+++|+
T Consensus 257 ~~iii~viv~vv 268 (280)
T COG5074 257 CFIIIIVIVVVV 268 (280)
T ss_pred HHHHHHHHHHHH
Confidence 666666555544
No 8
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.41 E-value=2.3e-12 Score=93.12 Aligned_cols=63 Identities=29% Similarity=0.435 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021981 217 SRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQIS 279 (304)
Q Consensus 217 ~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~ 279 (304)
+|++++..|+++|.+|++||.+|+.+|.+|+++||+|+.||+.|..+|..|+.+|.+|.++.|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~k 63 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 588899999999999999999999999999999999999999999999999999999998753
No 9
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.30 E-value=1.2e-11 Score=87.72 Aligned_cols=59 Identities=42% Similarity=0.551 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 216 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRH 274 (304)
Q Consensus 216 ~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka 274 (304)
++|++++..|+.+|.+|++||.+|+.+|.+|+++||+||+|++.+..+++.|..+|.||
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999999999999999999875
No 10
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.21 E-value=1e-10 Score=84.36 Aligned_cols=63 Identities=32% Similarity=0.480 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 212 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRH 274 (304)
Q Consensus 212 ~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka 274 (304)
..++++|++++..|+..|.++++||.+|+.+|.+|+++||+|+++++.+..++..|..+|.+|
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 457899999999999999999999999999999999999999999999999999999998764
No 11
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=1.9e-06 Score=77.82 Aligned_cols=94 Identities=20% Similarity=0.350 Sum_probs=71.4
Q ss_pred hHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 021981 202 SMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSN 281 (304)
Q Consensus 202 ~~q~ql~e~~~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~ 281 (304)
+.|+||+++|+. .+..|+.+|.-+..+-..++.-+.+|+.+||..++.++.+...+..+.+.|.+-.+..+++
T Consensus 141 ~~qqqm~~eQDe-------~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~ 213 (235)
T KOG3202|consen 141 QLQQQMLQEQDE-------GLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQC 213 (235)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455666666554 6889999999999999999999999999999999999999999999999999988855555
Q ss_pred chhHHHHHHHHHHHHHHHHHHh
Q 021981 282 RWLMIKIFAVIIFFLTVFMFFV 303 (304)
Q Consensus 282 r~~~~~i~~iliv~~~~~~~~~ 303 (304)
+ |||+|++++.++++++++|+
T Consensus 214 ~-~~~~il~l~~~~~lvv~i~~ 234 (235)
T KOG3202|consen 214 S-QWCAILLLVGLLLLVVIIFI 234 (235)
T ss_pred c-chhHHHHHHHHHHHHHHHhc
Confidence 4 33333333333344444443
No 12
>PF11416 Sed5p: Integral membrane protein Sed5p; InterPro: IPR021538 Sed5p interacts with Sly1p , a positive regulator of intracellular membrane fusion, allowing SM proteins to stay associated with the assembling fusion machinery. This allows for participation in late fusion steps []. ; PDB: 1MQS_B.
Probab=97.80 E-value=7.6e-06 Score=49.34 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=17.4
Q ss_pred CCCCCchHHHHHHHHHHHhhcCC
Q 021981 3 SPYRDRTAEFRSLSQTLKKIGGA 25 (304)
Q Consensus 3 ~~~~DRT~eF~s~v~s~~~~~~~ 25 (304)
++++|||.||+.||.++.++++.
T Consensus 2 ~~IqdRT~EFqqcV~s~~k~nk~ 24 (29)
T PF11416_consen 2 TSIQDRTIEFQQCVSSYKKRNKK 24 (29)
T ss_dssp -HHHB-HHHHHHHHHHHHHH---
T ss_pred cchhHhhHHHHHHHHHHHHHHhh
Confidence 47899999999999999999864
No 13
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.61 E-value=0.002 Score=49.55 Aligned_cols=52 Identities=15% Similarity=0.255 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 220 VALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNAL 271 (304)
Q Consensus 220 ~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL 271 (304)
+.+.+|+..+.|+.++..+=-..+.+-||-|+.++...++-....+.-.+.=
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a 54 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNA 54 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHH
Confidence 3578888999999998888888889999999999998877666555444433
No 14
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.036 Score=49.25 Aligned_cols=81 Identities=17% Similarity=0.265 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHH
Q 021981 222 LHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMF 301 (304)
Q Consensus 222 i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r~~~~~i~~iliv~~~~~~~ 301 (304)
++.=.+...|=-+|=..+-.=++.|.|.|.+--+-.-++.+|+..+.+-|..-.++.-.|||++.+|++++ +++++++|
T Consensus 137 l~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l-~~~il~il 215 (220)
T KOG1666|consen 137 LKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALL-VLAILLIL 215 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 33333444444444446666667899999999999999999999999999888888889999876666543 55556666
Q ss_pred Hh
Q 021981 302 FV 303 (304)
Q Consensus 302 ~~ 303 (304)
|+
T Consensus 216 Y~ 217 (220)
T KOG1666|consen 216 YS 217 (220)
T ss_pred HH
Confidence 65
No 15
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.00068 Score=54.32 Aligned_cols=81 Identities=16% Similarity=0.232 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Q 021981 219 AVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTV 298 (304)
Q Consensus 219 ~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r~~~~~i~~iliv~~~~ 298 (304)
.+.+..+.+.|.-|..+--++..-|..|..++|.+|+..+.+..-..+...-+..-.++ ++.+.+|+.+++++++|||+
T Consensus 35 ee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-sg~~l~~~m~~f~lV~~fi~ 113 (118)
T KOG3385|consen 35 EEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-SGISLLCWMAVFSLVAFFIL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHh
Confidence 45688888999999999999999999999999999999999999999998888665554 44444444444545555555
Q ss_pred HH
Q 021981 299 FM 300 (304)
Q Consensus 299 ~~ 300 (304)
++
T Consensus 114 ~~ 115 (118)
T KOG3385|consen 114 WV 115 (118)
T ss_pred he
Confidence 44
No 16
>PF10496 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N-terminus ; InterPro: IPR019529 This is the conserved N-terminal of Syntaxin-18. Syntaxin-18 is found in the SNARE complex of the endoplasmic reticulum and functions in the trafficking between the ER intermediate compartment and the cis-Golgi vesicle. In particular, the N-terminal region is important for the formation of ER aggregates []. More specifically, syntaxin-18 is involved in endoplasmic reticulum-mediated phagocytosis, presumably by regulating the specific and direct fusion of the ER with the plasma or phagosomal membranes [].
Probab=97.39 E-value=0.00089 Score=51.39 Aligned_cols=63 Identities=21% Similarity=0.182 Sum_probs=47.4
Q ss_pred CCchHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 6 RDRTAEFRSLSQTLKKIGGATTAVDQPNNSFVSPKPPNPASSRSEFNKKASRIGLGIHEASQKIARLA 73 (304)
Q Consensus 6 ~DRT~eF~s~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~seF~~~A~~I~~~i~~~~~kL~kL~ 73 (304)
+|+|.+|+.||+.++..++..+. . .....+...+.....+|.+.|..|-..|.++...|.+..
T Consensus 1 ~DlT~lF~~~V~~~~~~~~~~~~-~----~~~~~~~~~~~~~~d~F~keA~~i~~~I~~L~~fL~~iR 63 (87)
T PF10496_consen 1 TDLTPLFKACVKIIRTENKASGK-A----PSDSSKIRPKTKPKDEFLKEAYRILSHITSLRKFLKSIR 63 (87)
T ss_pred CCccHHHHHHHHHHHhhcccccc-c----cccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999987655431 0 001123345567899999999999999999999996543
No 17
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.0052 Score=49.49 Aligned_cols=52 Identities=17% Similarity=0.289 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 221 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLN 276 (304)
Q Consensus 221 ~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~ 276 (304)
.+++++..+.|+-+|+.+=-.-|.|-||-++.+++-.+. .+.|..+..+...
T Consensus 30 k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~----L~~~as~F~~~A~ 81 (116)
T KOG0860|consen 30 KLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQ----LQAGASQFEKTAV 81 (116)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 477788888999999999999999999999999876543 4444444444333
No 18
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.0034 Score=58.94 Aligned_cols=211 Identities=11% Similarity=0.139 Sum_probs=134.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 48 RSEFNKKASRIGLGIHEASQKIARLAKYLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIK 127 (304)
Q Consensus 48 ~seF~~~A~~I~~~i~~~~~kL~kL~~LLq~l~~~~~~~~~~~~q~~~h~~~Vv~~L~~~L~~~s~~Fk~vl~~r~~~~k 127 (304)
+.+-...+..|.+.=..+..+|..|.+........... ......-..+.+++-..|.....+....+.+..+.+-+.++
T Consensus 77 k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~-~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~ 155 (297)
T KOG0810|consen 77 KRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRS-SAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQ 155 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666777777777777777777776666542222 22234444444555577777777777777777777777776
Q ss_pred HHHhhhhh-hcccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHHhh
Q 021981 128 AHESRKQI-FSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQ 206 (304)
Q Consensus 128 ~~~eRr~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~q 206 (304)
.+-.-... ..... .-..+.. + |++ ..+.+ .-+. ...+-.+
T Consensus 156 Rql~i~~~~~~~de-~ie~~ie------------~---------------g~~---~~f~~-~~i~-------~~~~~~~ 196 (297)
T KOG0810|consen 156 RQLFIVGGEETTDE-EIEEMIE------------S---------------GGS---EVFTQ-KAIQ-------DRGQAKQ 196 (297)
T ss_pred HHHhhhCCCcCChH-HHHHHHH------------C---------------CCh---HHHHH-HHHH-------HhhhhHH
Confidence 66544432 11111 0000000 0 000 00000 0000 0111122
Q ss_pred hh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch
Q 021981 207 VV---PRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRW 283 (304)
Q Consensus 207 l~---e~~~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r~ 283 (304)
.+ ++--.++..-+..|.+|+.--.++..|-..=+.||..=+..|.+-..+|+.+..+++.|. +|.++.++++|
T Consensus 197 ~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv----~~qkkaRK~k~ 272 (297)
T KOG0810|consen 197 TLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAV----KYQKKARKWKI 272 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhcee
Confidence 22 223567888899999999999999999999999999999999999999999999999994 67777788999
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 021981 284 LMIKIFAVIIFFLTVFMFF 302 (304)
Q Consensus 284 ~~~~i~~iliv~~~~~~~~ 302 (304)
|+|+|++|+++++++++++
T Consensus 273 i~ii~~iii~~v~v~~i~~ 291 (297)
T KOG0810|consen 273 IIIIILIIIIVVLVVVIVV 291 (297)
T ss_pred eeehHHHHHHHHHhhhhcc
Confidence 8888888777777766654
No 19
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.49 Score=43.93 Aligned_cols=96 Identities=11% Similarity=0.103 Sum_probs=77.4
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch
Q 021981 204 LQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRW 283 (304)
Q Consensus 204 q~ql~e~~~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r~ 283 (304)
++.++++....|++-+.+|..+..-..+|+.|-++=+.+|..=++.|++-..||+.+..|+..|...=+++.+.. -=.
T Consensus 171 ~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~--~~l 248 (269)
T KOG0811|consen 171 QLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKK--CIL 248 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch--hhh
Confidence 344566667889999999999999999999999999999999999999999999999999999987655554433 555
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 021981 284 LMIKIFAVIIFFLTVFMF 301 (304)
Q Consensus 284 ~~~~i~~iliv~~~~~~~ 301 (304)
+++.++++++++++++.+
T Consensus 249 l~v~~~v~lii~l~i~~~ 266 (269)
T KOG0811|consen 249 LLVGGPVGLIIGLIIAGI 266 (269)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 566666666666666654
No 20
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=96.60 E-value=0.072 Score=44.44 Aligned_cols=88 Identities=18% Similarity=0.175 Sum_probs=62.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHhhhh-CCCchh
Q 021981 49 SEFNKKASRIGLGIHEASQKIARLAKY-----------------------------------LQTLQNLEIVE-GNYSQD 92 (304)
Q Consensus 49 seF~~~A~~I~~~i~~~~~kL~kL~~L-----------------------------------Lq~l~~~~~~~-~~~~~q 92 (304)
.+|...+..|..+|..+...+..|..| |..|....... ...+..
T Consensus 2 ~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~ 81 (151)
T cd00179 2 EEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSS 81 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcH
Confidence 467778888888888888777777666 22222211100 000223
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021981 93 RVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIF 136 (304)
Q Consensus 93 ~~~h~~~Vv~~L~~~L~~~s~~Fk~vl~~r~~~~k~~~eRr~~f 136 (304)
......+.+..|..+|+++...|+.++..+.+.+|.+-.|....
T Consensus 82 ~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i 125 (151)
T cd00179 82 VDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEI 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677899999999999999999999999999999999888543
No 21
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=96.55 E-value=0.037 Score=44.00 Aligned_cols=79 Identities=22% Similarity=0.254 Sum_probs=50.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHhhhhCCCchh
Q 021981 48 RSEFNKKASRIGLGIHEASQKIARLAKY-----------------------------------LQTLQNLEIVEGNYSQD 92 (304)
Q Consensus 48 ~seF~~~A~~I~~~i~~~~~kL~kL~~L-----------------------------------Lq~l~~~~~~~~~~~~q 92 (304)
..+|...+..|..+|..+...+.+|..| |..+.+........+..
T Consensus 3 ~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~ 82 (117)
T smart00503 3 LDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSA 82 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCH
Confidence 4578888999999999988888887777 11111111000000123
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 93 RVVHSTTVCDDLKSKLMGATKELQDVLTTRTENI 126 (304)
Q Consensus 93 ~~~h~~~Vv~~L~~~L~~~s~~Fk~vl~~r~~~~ 126 (304)
......+++..|..+|+++...|+.++..|.+.+
T Consensus 83 ~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~ 116 (117)
T smart00503 83 SDRTRKAQTEKLRKKFKEVMNEFQRLQRKYRERE 116 (117)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456667778888888888888888877776543
No 22
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=96.52 E-value=0.073 Score=48.79 Aligned_cols=75 Identities=19% Similarity=0.378 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Q 021981 218 RAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFL 296 (304)
Q Consensus 218 R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r~~~~~i~~iliv~~ 296 (304)
-.+++-.+-+.+.+=... ++..+.+-...|++.+..++.....++.....|.++... +.++|.+++|++|+++|+
T Consensus 168 L~~em~~La~~LK~~s~~---~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~-~~~~~~~~~i~~v~~~Fi 242 (251)
T PF09753_consen 168 LTEEMLSLARQLKENSLA---FSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSK-SWGCWTWLMIFVVIIVFI 242 (251)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHH
Confidence 334555555555555444 457899999999999999999999999999999887543 334444444444444443
No 23
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=96.35 E-value=0.021 Score=44.06 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=48.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhh-------hhC---C---CchhHHHHH
Q 021981 48 RSEFNKKASRIGLGIHEASQKIARLAKY-----------------LQTLQNLEI-------VEG---N---YSQDRVVHS 97 (304)
Q Consensus 48 ~seF~~~A~~I~~~i~~~~~kL~kL~~L-----------------Lq~l~~~~~-------~~~---~---~~~q~~~h~ 97 (304)
..+|...+.+|..+|.++..++.+|..| |..+..... ... . .......+.
T Consensus 2 ~~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~ 81 (103)
T PF00804_consen 2 MPEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPS 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Confidence 3689999999999999999999999998 221111111 000 0 011234567
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 021981 98 TTVCDDLKSKLMGATKELQDVL 119 (304)
Q Consensus 98 ~~Vv~~L~~~L~~~s~~Fk~vl 119 (304)
.+++.+.+..+..++..|++++
T Consensus 82 ~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 82 SNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHC
Confidence 7888888888999999998875
No 24
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.16 E-value=0.091 Score=48.43 Aligned_cols=87 Identities=15% Similarity=0.311 Sum_probs=75.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHH
Q 021981 208 VPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIK 287 (304)
Q Consensus 208 ~e~~~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r~~~~~ 287 (304)
..+-+.+|..-++.|.++-.--.+|+.+..+=+.+|.-=+.-|+.+-.|+..|......|.. +.++.++.+.|+++
T Consensus 190 ~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~----hqrrt~k~~~~~Ll 265 (283)
T COG5325 190 ITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPA----HQRRTKKCRFYLLL 265 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHH----HHhhhccchhhHHH
Confidence 45557889999999999999999999999999999999999999999999999999999985 66777888888888
Q ss_pred HHHHHHHHHHH
Q 021981 288 IFAVIIFFLTV 298 (304)
Q Consensus 288 i~~iliv~~~~ 298 (304)
+++|+.+|+++
T Consensus 266 il~vv~lfv~l 276 (283)
T COG5325 266 ILLVVLLFVSL 276 (283)
T ss_pred HHHHHHHHHHH
Confidence 77765555443
No 25
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=95.39 E-value=0.54 Score=36.30 Aligned_cols=61 Identities=11% Similarity=0.272 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHH
Q 021981 241 TMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFF 302 (304)
Q Consensus 241 ~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r~~~~~i~~iliv~~~~~~~~ 302 (304)
..+.+|-+.+..+.+...+...-+..+.+=+.++.++....||+++..|+ +++..++||+|
T Consensus 29 ~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~-~f~~~v~yI~~ 89 (92)
T PF03908_consen 29 QTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFL-FFLLVVLYILW 89 (92)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHhh
Confidence 34556777777777777777888888888777777777777777654443 33444555554
No 26
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=94.62 E-value=0.44 Score=43.10 Aligned_cols=35 Identities=11% Similarity=0.264 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021981 99 TVCDDLKSKLMGATKELQDVLTTRTENIKAHESRK 133 (304)
Q Consensus 99 ~Vv~~L~~~L~~~s~~Fk~vl~~r~~~~k~~~eRr 133 (304)
.-....+.|+.+.-.+|+.+...|-+..+++..|.
T Consensus 100 aQae~~r~Kf~~~I~~yr~i~~~yree~~e~~rrQ 134 (280)
T COG5074 100 AQAENVRQKFLKLIQDYRIIDSNYREEEKEQARRQ 134 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 44455577999999999999999999888887443
No 27
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=92.65 E-value=3.1 Score=37.47 Aligned_cols=64 Identities=8% Similarity=0.057 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 021981 216 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNR 282 (304)
Q Consensus 216 ~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r 282 (304)
++-.+++-.+-++..+-.--|+ ..+.+=.+.+.+-+.-++....-......-+.+|-++..+++
T Consensus 154 eeLaesll~LArslKtnalAfq---salkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~w 217 (244)
T KOG2678|consen 154 EELAESLLKLARSLKTNALAFQ---SALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYW 217 (244)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH---HHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHH
Confidence 3444445555554444433333 244455555555555555555556666666666655544444
No 28
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.57 E-value=0.64 Score=43.28 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 217 SRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLR 273 (304)
Q Consensus 217 ~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~k 273 (304)
+-.+.+.+|-..+..|..|-.+++.-|..|.+.||+|+++|+....+|+..+.-+.+
T Consensus 215 eiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 215 EIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 445568888888999999999999999999999999999999999999999987654
No 29
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.32 E-value=10 Score=33.90 Aligned_cols=75 Identities=16% Similarity=0.144 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 50 EFNKKASRIGLGIHEASQKIARLAKYLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAH 129 (304)
Q Consensus 50 eF~~~A~~I~~~i~~~~~kL~kL~~LLq~l~~~~~~~~~~~~q~~~h~~~Vv~~L~~~L~~~s~~Fk~vl~~r~~~~k~~ 129 (304)
+-.....+|..+|..+...+ +.+............+....+ ++.|...+..+-...+...+.++++++.-
T Consensus 30 e~~~v~~~i~~sI~~~~s~~-------~rl~~~~~~epp~~rq~~rlr---~dQl~~d~~~l~~~l~~~~~R~~~r~~~~ 99 (213)
T KOG3251|consen 30 EVSAVENSIQRSIDQYASRC-------QRLDVLVSKEPPKSRQAARLR---VDQLLEDVEHLQTSLRTSMNRNNRREQQA 99 (213)
T ss_pred chHHHHHHHHHhHHHHHHHH-------HHHHhHhhcCCCCcHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33455666666666666666 444444433223344555544 67777777777777777777777777777
Q ss_pred Hhhhh
Q 021981 130 ESRKQ 134 (304)
Q Consensus 130 ~eRr~ 134 (304)
++|..
T Consensus 100 ~er~~ 104 (213)
T KOG3251|consen 100 RERVE 104 (213)
T ss_pred HHHHH
Confidence 77554
No 30
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.04 E-value=11 Score=33.83 Aligned_cols=58 Identities=9% Similarity=0.167 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHH
Q 021981 243 VAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFM 300 (304)
Q Consensus 243 V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r~~~~~i~~iliv~~~~~~ 300 (304)
.+-|+.++-.|..-+.++....=.-+.=|+|-..+++++-.++-.|+.+|++|++||.
T Consensus 172 l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C~llllfy~ 229 (231)
T KOG3208|consen 172 LHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISVCTLLLLFYW 229 (231)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3458999999999888888877766654444433444444444455555555555543
No 31
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.64 E-value=18 Score=33.95 Aligned_cols=88 Identities=9% Similarity=0.193 Sum_probs=73.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHH
Q 021981 209 PRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKI 288 (304)
Q Consensus 209 e~~~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r~~~~~i 288 (304)
.+-+.+++.-.+.|..+..-..+|+.|..+=++.|--=+--|+.+-..|++|...+.+|. .|.++.++.+.+++++
T Consensus 214 ~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe----~yQk~~~k~~~i~~L~ 289 (305)
T KOG0809|consen 214 REREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAE----RYQKRNKKMKVILMLT 289 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHH----HHHhcCCceEehHHHH
Confidence 345678899999999999999999999999999999888889999999999999999886 5888888888866666
Q ss_pred HHHHHHHHHHHH
Q 021981 289 FAVIIFFLTVFM 300 (304)
Q Consensus 289 ~~iliv~~~~~~ 300 (304)
++|+++|+++.+
T Consensus 290 l~ii~llvllil 301 (305)
T KOG0809|consen 290 LLIIALLVLLIL 301 (305)
T ss_pred HHHHHHHHHHHh
Confidence 655555555543
No 32
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=88.34 E-value=8.2 Score=28.28 Aligned_cols=52 Identities=13% Similarity=0.266 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHH
Q 021981 247 GELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMF 301 (304)
Q Consensus 247 ge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r~~~~~i~~iliv~~~~~~~ 301 (304)
.+-++.+|.+.......+...+.+|.+-. ...+|++-.+++.++.+++.|++
T Consensus 19 ~~~i~~lE~~~~~~e~~i~~~~~~l~~I~---~n~kW~~r~iiGaiI~~i~~~i~ 70 (71)
T PF10779_consen 19 EERIDKLEKRDAANEKDIKNLNKQLEKIK---SNTKWIWRTIIGAIITAIIYLII 70 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445444444444444444443321 23578777777777676666554
No 33
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=86.72 E-value=34 Score=33.65 Aligned_cols=52 Identities=19% Similarity=0.157 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH----HhccCchhHHHHHHHH
Q 021981 241 TMVAQQGELAIRIDDNMDESLANVEGAR-NALLRHLN----QISSNRWLMIKIFAVI 292 (304)
Q Consensus 241 ~~V~~Qge~id~Id~nv~~a~~nv~~g~-~eL~ka~~----~~~~~r~~~~~i~~il 292 (304)
-|.++=.|-.-.|+++++.-...|..=. .+++++.+ .....|.++.+++=++
T Consensus 291 K~~Yqs~eRaRdi~E~~Es~qtRisklE~~~~Qq~~q~e~~~n~~~r~~l~k~inll 347 (395)
T PF10267_consen 291 KMAYQSYERARDIWEVMESCQTRISKLEQQQQQQVVQLEGTENSRARALLGKLINLL 347 (395)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHH
Confidence 3455666777788888888887776654 34445533 1223345555554333
No 34
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=85.81 E-value=9.5 Score=40.89 Aligned_cols=64 Identities=14% Similarity=0.266 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHH
Q 021981 221 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFA 290 (304)
Q Consensus 221 ~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r~~~~~i~~ 290 (304)
.+..+.+.+..++.-+..++..+..+ ....+..-..++...+........+|- .-||.+.++++
T Consensus 358 ~v~~ik~~l~~~~~~i~~~a~~i~~~--~~~~~s~~~~~~~~~~~~~~~~~~~y~----~yR~~~~lil~ 421 (806)
T PF05478_consen 358 VVPPIKRDLDSIGKQIRSQAKQIPNQ--IDSNISDILNNTERSSRSFEDEYEKYD----SYRWIVGLILC 421 (806)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhhcchhHHHHHH----HHHHHHHHHHH
Confidence 34455555555555555555555544 444455555555555555555554443 44776544443
No 35
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=85.27 E-value=14 Score=27.92 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 021981 214 YSQSRAVALHNVEST 228 (304)
Q Consensus 214 ~l~~R~~~i~~ie~~ 228 (304)
.+-+|.+.+..|+..
T Consensus 25 ~ll~Rge~L~~L~~k 39 (89)
T PF00957_consen 25 KLLERGEKLEELEDK 39 (89)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHcCchHHHHHHH
Confidence 333444444444433
No 36
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=84.07 E-value=33 Score=33.50 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 223 HNVESTITELGGIF-THLATMVAQQGELAIRIDDNMDESLANVEGARNAL 271 (304)
Q Consensus 223 ~~ie~~i~eL~~if-~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL 271 (304)
..+|..+.++-++. ++++.+=+++.-|=++++|.-.+=..+|+.+.+-+
T Consensus 309 erLEEqLNdlteLqQnEi~nLKqElasmeervaYQsyERaRdIqEalEsc 358 (455)
T KOG3850|consen 309 ERLEEQLNDLTELQQNEIANLKQELASMEERVAYQSYERARDIQEALESC 358 (455)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555565555553 57888888999999999888777666666665543
No 37
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=84.07 E-value=1.5 Score=31.33 Aligned_cols=15 Identities=13% Similarity=0.563 Sum_probs=6.5
Q ss_pred HHhccCchhHHHHHH
Q 021981 276 NQISSNRWLMIKIFA 290 (304)
Q Consensus 276 ~~~~~~r~~~~~i~~ 290 (304)
++.++.+|+++.+++
T Consensus 33 k~~~~~~~i~~~~~i 47 (59)
T PF09889_consen 33 KRMRKTQYIFFGIFI 47 (59)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444555444443
No 38
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=83.84 E-value=1.7 Score=30.99 Aligned_cols=28 Identities=25% Similarity=0.435 Sum_probs=20.4
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHHH
Q 021981 274 HLNQISSNRWLMIKIFAVIIFFLTVFMF 301 (304)
Q Consensus 274 a~~~~~~~r~~~~~i~~iliv~~~~~~~ 301 (304)
+.+++++-+..-.++++++++|++++++
T Consensus 28 ~~k~qk~~~~~~~i~~~~~i~~l~v~~~ 55 (59)
T PF09889_consen 28 YRKRQKRMRKTQYIFFGIFILFLAVWIF 55 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677888888888887777665
No 39
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.80 E-value=22 Score=28.87 Aligned_cols=21 Identities=24% Similarity=0.080 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021981 252 RIDDNMDESLANVEGARNALLR 273 (304)
Q Consensus 252 ~Id~nv~~a~~nv~~g~~eL~k 273 (304)
|-|.--..|..+...|. .|++
T Consensus 65 rad~L~~~as~F~~~A~-klkr 85 (116)
T KOG0860|consen 65 RADQLQAGASQFEKTAV-KLKR 85 (116)
T ss_pred HHHHHHHHHHHHHHHHH-HHHH
Confidence 33333334444444444 4443
No 40
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=83.18 E-value=35 Score=30.86 Aligned_cols=88 Identities=11% Similarity=0.178 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH---------HHHHHHHHHHHHHHHHHHHH
Q 021981 213 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELA-------IRIDDN---------MDESLANVEGARNALLRHLN 276 (304)
Q Consensus 213 ~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~i-------d~Id~n---------v~~a~~nv~~g~~eL~ka~~ 276 (304)
+....|.++.++|-+++.+=..=|.+-+.-+ |-.-+ ++|+.+ +-+..+..++..+++.++.+
T Consensus 64 ~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~--~~dF~~~Lq~~Lk~V~tde~k~~~~~ei~k~r~e~~~ml~evK~~~E 141 (230)
T PF03904_consen 64 EKQDIREKNLKEIKSSLEETTKDFIDKTEKV--HNDFQDILQDELKDVDTDELKNIAQNEIKKVREENKSMLQEVKQSHE 141 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777777777665566654433 22222 222222 22222333333444444444
Q ss_pred -HhccCchhHHHHHHHHHHHHHHHHHH
Q 021981 277 -QISSNRWLMIKIFAVIIFFLTVFMFF 302 (304)
Q Consensus 277 -~~~~~r~~~~~i~~iliv~~~~~~~~ 302 (304)
+++..+|++..|.++++||++|.+|+
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVM 168 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44455666655656555555555444
No 41
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=83.08 E-value=14 Score=26.21 Aligned_cols=54 Identities=20% Similarity=0.174 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 221 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRH 274 (304)
Q Consensus 221 ~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka 274 (304)
.+..-.+.+.|.-++-.+....+..|++.|.++...+.+...++..++.-|.+-
T Consensus 9 ~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I 62 (66)
T PF12352_consen 9 SLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRI 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 455556666677777778888889999999999999999999999999877553
No 42
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.34 E-value=35 Score=31.99 Aligned_cols=57 Identities=7% Similarity=0.088 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 215 SQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNAL 271 (304)
Q Consensus 215 l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL 271 (304)
++.-+..|.+|=.-..+|+.|..+=..+|.-=+.-+|-++-||+.|...+-+--+.+
T Consensus 229 ~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~v 285 (311)
T KOG0812|consen 229 MQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERV 285 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHh
Confidence 333444455555555555555555555555556666777777777776665444433
No 43
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.62 E-value=9.5 Score=33.83 Aligned_cols=60 Identities=18% Similarity=0.283 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch
Q 021981 220 VALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRW 283 (304)
Q Consensus 220 ~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r~ 283 (304)
+.+.++...|.|+.+++-+==..|.+-||-|+-+=+ .++|+..-....++.-++.+++.|
T Consensus 125 d~lskvkaqv~evk~vM~eNIekvldRGekiELLVd----KTenl~~~s~~fr~q~r~~~r~mw 184 (217)
T KOG0859|consen 125 SKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVD----KTENLRSKSFDFRTQGRKLRRKMW 184 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeec----hhhhhhhhhHHHHHHHHHHHHHHH
Confidence 456777777888888777766777777776655433 344444445555554444333333
No 44
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=73.78 E-value=24 Score=25.70 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 220 VALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGAR 268 (304)
Q Consensus 220 ~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~ 268 (304)
+.|..||..+.-.-.....|+..|.+|...|+++...+..-...+....
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3577788888888888888889999999999999988887777766543
No 45
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=71.62 E-value=6.8 Score=29.95 Aligned_cols=10 Identities=10% Similarity=0.175 Sum_probs=5.3
Q ss_pred HHHHHHHHHH
Q 021981 268 RNALLRHLNQ 277 (304)
Q Consensus 268 ~~eL~ka~~~ 277 (304)
..||.+-..+
T Consensus 19 ~DQL~qlVsr 28 (84)
T PF06143_consen 19 YDQLEQLVSR 28 (84)
T ss_pred HHHHHHHHHh
Confidence 4566665543
No 46
>PHA03164 hypothetical protein; Provisional
Probab=69.01 E-value=6.6 Score=29.36 Aligned_cols=25 Identities=16% Similarity=0.556 Sum_probs=14.6
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHh
Q 021981 279 SSNRWLMIKIFAVIIFFLTVFMFFV 303 (304)
Q Consensus 279 ~~~r~~~~~i~~iliv~~~~~~~~~ 303 (304)
+....+++-+++|-+|++++|++|+
T Consensus 56 ktftFlvLtgLaIamILfiifvlyv 80 (88)
T PHA03164 56 KTFTFLVLTGLAIAMILFIIFVLYV 80 (88)
T ss_pred heeehHHHHHHHHHHHHHHHHHHHh
Confidence 3344455666666666666666654
No 47
>PRK02119 hypothetical protein; Provisional
Probab=67.89 E-value=47 Score=24.56 Aligned_cols=48 Identities=8% Similarity=0.095 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 219 AVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEG 266 (304)
Q Consensus 219 ~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~ 266 (304)
.+.|..||..+.-.-..-.+|+..|.+|...|++....+..-...+..
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345778888888888888888899999999999988877766655544
No 48
>PRK00295 hypothetical protein; Provisional
Probab=66.94 E-value=47 Score=24.19 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 221 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 267 (304)
Q Consensus 221 ~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g 267 (304)
.|..||..+.-.-..-.+|+..|.+|...|++....+..-...+...
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37888888888888888888999999999999988877776666543
No 49
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=65.50 E-value=40 Score=23.88 Aligned_cols=44 Identities=11% Similarity=0.228 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 221 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANV 264 (304)
Q Consensus 221 ~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv 264 (304)
.++.++.-+..|-..|.....--...++.++|+|.+++.--.++
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~m 45 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYM 45 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 36788888999999999999999999999999999998765554
No 50
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=64.63 E-value=43 Score=22.92 Aligned_cols=58 Identities=5% Similarity=0.098 Sum_probs=34.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 208 VPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVE 265 (304)
Q Consensus 208 ~e~~~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~ 265 (304)
+.+++..+..-...+..+..-..+++.+..+=..++..=...++.++.++..+..++.
T Consensus 7 ~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~ 64 (66)
T smart00397 7 EEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLK 64 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3344555555555566666666666666655556665555666666666666665544
No 51
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=64.37 E-value=62 Score=24.71 Aligned_cols=26 Identities=4% Similarity=0.139 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021981 107 KLMGATKELQDVLTTRTENIKAHESR 132 (304)
Q Consensus 107 ~L~~~s~~Fk~vl~~r~~~~k~~~eR 132 (304)
...+++.+|+.++..+.+..+.-.++
T Consensus 72 ~~~KL~~df~~~l~~fq~~q~~~~~~ 97 (102)
T PF14523_consen 72 QREKLSRDFKEALQEFQKAQRRYAEK 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444443333
No 52
>PF14992 TMCO5: TMCO5 family
Probab=64.31 E-value=1.3e+02 Score=28.27 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 215 SQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGAR 268 (304)
Q Consensus 215 l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~ 268 (304)
...-..++.++++...++.++-.|=+.-++.=.|.+.+|+...+...-+.+-+.
T Consensus 125 ~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~el~k 178 (280)
T PF14992_consen 125 CASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEKELSK 178 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777778888888888888888777888888887776665555443
No 53
>PRK00736 hypothetical protein; Provisional
Probab=63.70 E-value=54 Score=23.83 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 221 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEG 266 (304)
Q Consensus 221 ~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~ 266 (304)
.|..||..+...-..-.+|+..|.+|...|+++...+..-...+..
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777888888888888888889999999999998877776666554
No 54
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=63.64 E-value=64 Score=24.61 Aligned_cols=66 Identities=18% Similarity=0.296 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhccCchhHHHHHH
Q 021981 225 VESTITELGGIFTHLATMVAQQG-ELAIRIDDNMDESLANVEGARNALLR--------HLNQISSNRWLMIKIFA 290 (304)
Q Consensus 225 ie~~i~eL~~if~~la~~V~~Qg-e~id~Id~nv~~a~~nv~~g~~eL~k--------a~~~~~~~r~~~~~i~~ 290 (304)
|+.-+.++..+....+....+.. +.-+++...++.+...+.....++.. +..+++.+.|.-+.|-+
T Consensus 7 l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~svgiAa 81 (94)
T PF05957_consen 7 LEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENPWQSVGIAA 81 (94)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHH
Confidence 34444444444444444443332 23355555555555555544444332 22367788987554443
No 55
>PRK02793 phi X174 lysis protein; Provisional
Probab=63.32 E-value=58 Score=23.98 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 220 VALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEG 266 (304)
Q Consensus 220 ~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~ 266 (304)
+.|..||..+.-.-..-.+|+..|.+|...|+++...+..-...+..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35777888888888888888889999999999988777666555544
No 56
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=62.11 E-value=45 Score=22.38 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021981 224 NVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQI 278 (304)
Q Consensus 224 ~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~ 278 (304)
+-+..+..|.....++..|..+=+.+|..=..-++....+++.+...+.++.++.
T Consensus 3 e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l 57 (60)
T cd00193 3 ERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRL 57 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777777777777777777777777777766543
No 57
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=62.02 E-value=19 Score=24.58 Aligned_cols=17 Identities=12% Similarity=0.138 Sum_probs=10.3
Q ss_pred HHHHHHHhccCchhHHH
Q 021981 271 LLRHLNQISSNRWLMIK 287 (304)
Q Consensus 271 L~ka~~~~~~~r~~~~~ 287 (304)
.+.+.++-++||.-++.
T Consensus 5 ~~~~~~~f~~nk~a~~g 21 (56)
T PF12911_consen 5 WKDAWRRFRRNKLAVIG 21 (56)
T ss_pred HHHHHHHHHhCchHHHH
Confidence 44566776777765443
No 58
>PRK04325 hypothetical protein; Provisional
Probab=61.49 E-value=64 Score=23.88 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 222 LHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEG 266 (304)
Q Consensus 222 i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~ 266 (304)
|..||..+.-.-..-.+|+..|.+|...|+++...+..-...+..
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888889999999999998777766665544
No 59
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=60.97 E-value=84 Score=28.58 Aligned_cols=81 Identities=11% Similarity=0.216 Sum_probs=38.7
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccCchhHHHHHHHHH
Q 021981 218 RAVALH-NVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLN---QISSNRWLMIKIFAVII 293 (304)
Q Consensus 218 R~~~i~-~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~---~~~~~r~~~~~i~~ili 293 (304)
+++.++ +|-..|..|..-.++=+... +..|..=..-++.+...++.-..-|..+-. ...++.|.|+.++++++
T Consensus 160 ~~~~~QE~L~~em~~La~~LK~~s~~~---~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i~~ 236 (251)
T PF09753_consen 160 HHRNLQEDLTEEMLSLARQLKENSLAF---SQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMIFV 236 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 444444 45555555544443333222 333333233344455555555555555443 35667778655555555
Q ss_pred HHHHHHHH
Q 021981 294 FFLTVFMF 301 (304)
Q Consensus 294 v~~~~~~~ 301 (304)
|+++|+++
T Consensus 237 v~~~Fi~m 244 (251)
T PF09753_consen 237 VIIVFIMM 244 (251)
T ss_pred HHHHHHHH
Confidence 55544443
No 60
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.59 E-value=1e+02 Score=28.15 Aligned_cols=32 Identities=6% Similarity=0.158 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 238 HLATMVAQQGELAIRIDDNMDESLANVEGARN 269 (304)
Q Consensus 238 ~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~ 269 (304)
.=+.|+.+.+.-+|+++.-+......+..-+.
T Consensus 177 ~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~ 208 (235)
T KOG3202|consen 177 EQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR 208 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667777788888888888877777766
No 61
>PHA02844 putative transmembrane protein; Provisional
Probab=59.93 E-value=12 Score=27.85 Aligned_cols=10 Identities=10% Similarity=-0.114 Sum_probs=4.4
Q ss_pred cCchhHHHHH
Q 021981 280 SNRWLMIKIF 289 (304)
Q Consensus 280 ~~r~~~~~i~ 289 (304)
+..|.+++|+
T Consensus 45 ~~~~~~~ii~ 54 (75)
T PHA02844 45 SSSTKIWILT 54 (75)
T ss_pred ChhHHHHHHH
Confidence 3445444433
No 62
>PHA03240 envelope glycoprotein M; Provisional
Probab=59.88 E-value=7.9 Score=34.74 Aligned_cols=9 Identities=33% Similarity=0.955 Sum_probs=3.9
Q ss_pred chhHHHHHH
Q 021981 282 RWLMIKIFA 290 (304)
Q Consensus 282 r~~~~~i~~ 290 (304)
-|+|++|++
T Consensus 214 ~WIiilIIi 222 (258)
T PHA03240 214 AWIFIAIII 222 (258)
T ss_pred hHHHHHHHH
Confidence 355444443
No 63
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=59.81 E-value=12 Score=25.34 Aligned_cols=17 Identities=12% Similarity=0.544 Sum_probs=11.5
Q ss_pred ccCchhHHHHHHHHHHH
Q 021981 279 SSNRWLMIKIFAVIIFF 295 (304)
Q Consensus 279 ~~~r~~~~~i~~iliv~ 295 (304)
|+-||.+++++++.++|
T Consensus 2 kk~rwiili~iv~~Cl~ 18 (47)
T PRK10299 2 KKFRWVVLVVVVLACLL 18 (47)
T ss_pred ceeeehHHHHHHHHHHH
Confidence 56789887766655444
No 64
>PHA02675 ORF104 fusion protein; Provisional
Probab=59.37 E-value=58 Score=24.85 Aligned_cols=41 Identities=12% Similarity=0.249 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 224 NVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANV 264 (304)
Q Consensus 224 ~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv 264 (304)
.||.-+..|-.+|..+...-..=++.|+|+|.+++....++
T Consensus 34 sle~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~M 74 (90)
T PHA02675 34 SVEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREAL 74 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566668888888899999999999999998765554
No 65
>PHA02692 hypothetical protein; Provisional
Probab=58.44 E-value=13 Score=27.28 Aligned_cols=11 Identities=9% Similarity=0.404 Sum_probs=4.5
Q ss_pred ccCchhHHHHH
Q 021981 279 SSNRWLMIKIF 289 (304)
Q Consensus 279 ~~~r~~~~~i~ 289 (304)
++..|..+++.
T Consensus 41 ~~~~~~~~ii~ 51 (70)
T PHA02692 41 KGVPWTTVFLI 51 (70)
T ss_pred CCcchHHHHHH
Confidence 34445443333
No 66
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.10 E-value=84 Score=29.35 Aligned_cols=44 Identities=23% Similarity=0.260 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 230 TELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLR 273 (304)
Q Consensus 230 ~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~k 273 (304)
.|....-..-..|..+|+|.|++|+.+++........+.+.|.-
T Consensus 89 ~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~ 132 (273)
T KOG3065|consen 89 EESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTE 132 (273)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHH
Confidence 34444445667788999999999999999999999888877743
No 67
>PRK04406 hypothetical protein; Provisional
Probab=56.44 E-value=81 Score=23.46 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 220 VALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEG 266 (304)
Q Consensus 220 ~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~ 266 (304)
..|..||..+.-.-..-.+|+..|.+|...|+++...+..-...+..
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35777888888888888888889999999998888777666555543
No 68
>PHA02975 hypothetical protein; Provisional
Probab=55.78 E-value=16 Score=26.75 Aligned_cols=11 Identities=27% Similarity=0.446 Sum_probs=4.6
Q ss_pred ccCchhHHHHH
Q 021981 279 SSNRWLMIKIF 289 (304)
Q Consensus 279 ~~~r~~~~~i~ 289 (304)
++..|.+++|+
T Consensus 40 ~~~~~~~~ii~ 50 (69)
T PHA02975 40 KSSLSIILIIF 50 (69)
T ss_pred CCchHHHHHHH
Confidence 34444444433
No 69
>PHA02819 hypothetical protein; Provisional
Probab=54.89 E-value=16 Score=26.86 Aligned_cols=10 Identities=20% Similarity=-0.177 Sum_probs=4.1
Q ss_pred cCchhHHHHH
Q 021981 280 SNRWLMIKIF 289 (304)
Q Consensus 280 ~~r~~~~~i~ 289 (304)
+..|.+++|.
T Consensus 43 ~~~~~~~ii~ 52 (71)
T PHA02819 43 SFLRYYLIIG 52 (71)
T ss_pred ChhHHHHHHH
Confidence 3444443333
No 70
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=54.53 E-value=37 Score=33.39 Aligned_cols=13 Identities=46% Similarity=0.680 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHH
Q 021981 224 NVESTITELGGIF 236 (304)
Q Consensus 224 ~ie~~i~eL~~if 236 (304)
.++..+.+|.++|
T Consensus 122 ~v~~~l~~Le~~~ 134 (406)
T PF04906_consen 122 TVEQHLTRLEEIF 134 (406)
T ss_pred HHHHHHHHHHHHh
Confidence 3556666677776
No 71
>PHA03054 IMV membrane protein; Provisional
Probab=53.26 E-value=15 Score=27.08 Aligned_cols=10 Identities=20% Similarity=0.481 Sum_probs=4.0
Q ss_pred cCchhHHHHH
Q 021981 280 SNRWLMIKIF 289 (304)
Q Consensus 280 ~~r~~~~~i~ 289 (304)
+..|.++++.
T Consensus 45 ~~~~~~~ii~ 54 (72)
T PHA03054 45 CWGWYWLIII 54 (72)
T ss_pred CchHHHHHHH
Confidence 3444433333
No 72
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=52.37 E-value=1.8e+02 Score=26.37 Aligned_cols=70 Identities=9% Similarity=0.040 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccCchhHHHHHHHHHHHH
Q 021981 224 NVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLN----QISSNRWLMIKIFAVIIFFL 296 (304)
Q Consensus 224 ~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~----~~~~~r~~~~~i~~iliv~~ 296 (304)
+|-.++.-|..-|+.. -..=+..|+.=..-+.-+..-++....-|..+-. +-++++..|+.+-+||+||+
T Consensus 155 eLaesll~LArslKtn---alAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~~ 228 (244)
T KOG2678|consen 155 ELAESLLKLARSLKTN---ALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVIL 228 (244)
T ss_pred HHHHHHHHHHHHHHHh---HHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3444444444444442 2222333333222233333444444444444433 44555556665554444443
No 73
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=50.15 E-value=1.2e+02 Score=23.67 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 221 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLA 262 (304)
Q Consensus 221 ~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~ 262 (304)
.|..||..-..+..=+.++-.=++.|...-+..|.+++.-..
T Consensus 12 Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~r 53 (98)
T PF11166_consen 12 RIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEINR 53 (98)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHH
Confidence 355566555555555555556677888888888888887443
No 74
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=48.51 E-value=1.3e+02 Score=23.33 Aligned_cols=53 Identities=11% Similarity=0.249 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 225 VESTITELGGIFTHLATMVA-QQGELAIRIDDNMDESLANVEGARNALLRHLNQ 277 (304)
Q Consensus 225 ie~~i~eL~~if~~la~~V~-~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~ 277 (304)
.+..-.+|..-|..|-..+. ...++++.|+..-......+..-...+......
T Consensus 37 ~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~ 90 (127)
T smart00502 37 AADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEK 90 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445567777777777776 456788899888877777777777766665554
No 75
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=48.34 E-value=23 Score=25.83 Aligned_cols=18 Identities=22% Similarity=0.445 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021981 285 MIKIFAVIIFFLTVFMFF 302 (304)
Q Consensus 285 ~~~i~~iliv~~~~~~~~ 302 (304)
++++++|+|+.+|+|.+|
T Consensus 6 iLi~ICVaii~lIlY~iY 23 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIY 23 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455556666554
No 76
>PHA03049 IMV membrane protein; Provisional
Probab=47.26 E-value=25 Score=25.60 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021981 285 MIKIFAVIIFFLTVFMFF 302 (304)
Q Consensus 285 ~~~i~~iliv~~~~~~~~ 302 (304)
+++++++.|+.+|+|.+|
T Consensus 6 ~l~iICVaIi~lIvYgiY 23 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIY 23 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455556666654
No 77
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.62 E-value=48 Score=29.51 Aligned_cols=6 Identities=17% Similarity=-0.108 Sum_probs=3.0
Q ss_pred HHhhhh
Q 021981 203 MLQQVV 208 (304)
Q Consensus 203 ~q~ql~ 208 (304)
+||+..
T Consensus 113 qqm~y~ 118 (217)
T KOG0859|consen 113 QQMQYC 118 (217)
T ss_pred HHHHHH
Confidence 455554
No 78
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=46.00 E-value=17 Score=28.51 Aligned_cols=7 Identities=0% Similarity=0.496 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 021981 294 FFLTVFM 300 (304)
Q Consensus 294 v~~~~~~ 300 (304)
+++++++
T Consensus 74 IlVily~ 80 (101)
T PF06024_consen 74 ILVILYA 80 (101)
T ss_pred HHHHHhh
Confidence 3333333
No 79
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=44.38 E-value=99 Score=25.44 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 221 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDD 255 (304)
Q Consensus 221 ~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~ 255 (304)
++..+...+..++.-+..+..+|..=+.-|++||+
T Consensus 90 eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 90 EVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444444444444444444444443
No 80
>PHA02849 putative transmembrane protein; Provisional
Probab=44.25 E-value=29 Score=26.13 Aligned_cols=20 Identities=25% Similarity=0.725 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 021981 284 LMIKIFAVIIFFLTVFMFFV 303 (304)
Q Consensus 284 ~~~~i~~iliv~~~~~~~~~ 303 (304)
+++.+|+++|+|+++.++++
T Consensus 18 ~vi~v~v~vI~i~~flLlyL 37 (82)
T PHA02849 18 TVILVFVLVISFLAFMLLYL 37 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544443
No 81
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=43.79 E-value=2.1e+02 Score=28.41 Aligned_cols=11 Identities=36% Similarity=0.634 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 021981 227 STITELGGIFT 237 (304)
Q Consensus 227 ~~i~eL~~if~ 237 (304)
..+.+|+++|.
T Consensus 145 ~~L~~L~~il~ 155 (418)
T cd07912 145 PQLTNLEDIFD 155 (418)
T ss_pred hhHhHHHHHhC
Confidence 34445555544
No 82
>PRK14710 hypothetical protein; Provisional
Probab=43.63 E-value=27 Score=25.76 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 021981 283 WLMIKIFAVIIFFLTVFMFF 302 (304)
Q Consensus 283 ~~~~~i~~iliv~~~~~~~~ 302 (304)
++++.||+++|+.++..+-|
T Consensus 10 km~ififaiii~v~lcv~ty 29 (86)
T PRK14710 10 KMIIFIFAIIIIVVLCVITY 29 (86)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 46677777776666655443
No 83
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.24 E-value=2.4e+02 Score=25.38 Aligned_cols=8 Identities=25% Similarity=0.488 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 021981 246 QGELAIRI 253 (304)
Q Consensus 246 Qge~id~I 253 (304)
-|+.++..
T Consensus 160 rg~~l~~l 167 (216)
T KOG0862|consen 160 RGEVLNAL 167 (216)
T ss_pred hchHHHhh
Confidence 33333333
No 84
>PRK14762 membrane protein; Provisional
Probab=41.53 E-value=41 Score=19.74 Aligned_cols=7 Identities=43% Similarity=1.251 Sum_probs=2.9
Q ss_pred hhHHHHH
Q 021981 283 WLMIKIF 289 (304)
Q Consensus 283 ~~~~~i~ 289 (304)
|.+.+||
T Consensus 6 w~i~iif 12 (27)
T PRK14762 6 WAVLIIF 12 (27)
T ss_pred HHHHHHH
Confidence 4444444
No 85
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=41.51 E-value=1.8e+02 Score=23.09 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 221 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDE 259 (304)
Q Consensus 221 ~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~ 259 (304)
.|..++..+.-.++=...+..-+..||++++.|..-...
T Consensus 54 qI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~ 92 (102)
T PF01519_consen 54 QINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQS 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555555555566666555544433
No 86
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=41.03 E-value=30 Score=31.01 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=5.0
Q ss_pred CchhHHHHHHH
Q 021981 281 NRWLMIKIFAV 291 (304)
Q Consensus 281 ~r~~~~~i~~i 291 (304)
++..|++||+|
T Consensus 126 ~K~amLIClII 136 (227)
T PF05399_consen 126 NKMAMLICLII 136 (227)
T ss_pred cchhHHHHHHH
Confidence 45444444433
No 87
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=40.27 E-value=2.4e+02 Score=24.19 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=13.5
Q ss_pred chhHHHHHHhHHHHHHHHHHHHHHHH
Q 021981 90 SQDRVVHSTTVCDDLKSKLMGATKEL 115 (304)
Q Consensus 90 ~~q~~~h~~~Vv~~L~~~L~~~s~~F 115 (304)
..|...-...+...|...+..+...|
T Consensus 18 ~~QAe~i~~~l~~~l~~~~~~~~~~~ 43 (177)
T PF07798_consen 18 EEQAEAIMKALREVLNDSLEKVAQDL 43 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544443
No 88
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=40.02 E-value=24 Score=35.69 Aligned_cols=29 Identities=17% Similarity=0.033 Sum_probs=21.9
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 021981 91 QDRVVHSTTVCDDLKSKLMGATKELQDVL 119 (304)
Q Consensus 91 ~q~~~h~~~Vv~~L~~~L~~~s~~Fk~vl 119 (304)
....-+...+...|..+|-+++..|...+
T Consensus 170 l~C~v~~~~lgi~L~~YltElttvFg~ql 198 (490)
T PF00523_consen 170 LSCEVADNQLGISLNQYLTELTTVFGPQL 198 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34555666777788889999999998754
No 89
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=39.98 E-value=3.2e+02 Score=29.20 Aligned_cols=26 Identities=8% Similarity=-0.079 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhccCchhHHHH
Q 021981 263 NVEGARNALLRHLNQISSNRWLMIKI 288 (304)
Q Consensus 263 nv~~g~~eL~ka~~~~~~~r~~~~~i 288 (304)
....+......++......-++++++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (914)
T PRK11466 314 RNQHGLAHLEKASARGQYSLLLLGMV 339 (914)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444443333344444333
No 90
>PRK09793 methyl-accepting protein IV; Provisional
Probab=39.97 E-value=3e+02 Score=27.70 Aligned_cols=53 Identities=11% Similarity=0.192 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 213 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVE 265 (304)
Q Consensus 213 ~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~ 265 (304)
..+.+-.+.+.+|...+.++.+...+++..+.+|...++.|..++.+...-++
T Consensus 429 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~e~~~~~~~i~~~i~~i~~~~~ 481 (533)
T PRK09793 429 KLVNNAAATMTDIVSSVTRVNDIMGEIASASEEQRRGIEQVAQAVSQMDQVTQ 481 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556788888999999999999999999999999988887766544333
No 91
>PHA03164 hypothetical protein; Provisional
Probab=39.48 E-value=24 Score=26.43 Aligned_cols=24 Identities=13% Similarity=0.384 Sum_probs=16.5
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHh
Q 021981 280 SNRWLMIKIFAVIIFFLTVFMFFV 303 (304)
Q Consensus 280 ~~r~~~~~i~~iliv~~~~~~~~~ 303 (304)
.+|..-++++..++|-.|+|++|+
T Consensus 54 rRktftFlvLtgLaIamILfiifv 77 (88)
T PHA03164 54 RRKTFTFLVLTGLAIAMILFIIFV 77 (88)
T ss_pred hhheeehHHHHHHHHHHHHHHHHH
Confidence 444566777777777777777775
No 92
>PF00482 T2SF: Type II secretion system (T2SS), protein F; InterPro: IPR018076 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) [], have been found to be evolutionary related. These are proteins of about 400 amino acids that are highly hydrophobic and which are thought to be integral protein of the inner membrane. Proteins with this domain form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae [].; PDB: 2VMA_A 3C1Q_A 2VMB_B 2WHN_B.
Probab=39.24 E-value=58 Score=24.72 Aligned_cols=7 Identities=14% Similarity=0.468 Sum_probs=2.4
Q ss_pred HHHHHHH
Q 021981 224 NVESTIT 230 (304)
Q Consensus 224 ~ie~~i~ 230 (304)
.++..+.
T Consensus 47 ~~~~al~ 53 (124)
T PF00482_consen 47 SLEEALE 53 (124)
T ss_dssp -HHHHHC
T ss_pred CHHHHHH
Confidence 3444433
No 93
>PF15102 TMEM154: TMEM154 protein family
Probab=38.90 E-value=15 Score=31.06 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 021981 283 WLMIKIFAVIIFFLTVFMFFV 303 (304)
Q Consensus 283 ~~~~~i~~iliv~~~~~~~~~ 303 (304)
.+|++|=+|+++++|+++||+
T Consensus 58 iLmIlIP~VLLvlLLl~vV~l 78 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCL 78 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHh
Confidence 445555456666666666655
No 94
>PRK11637 AmiB activator; Provisional
Probab=38.32 E-value=3.9e+02 Score=26.16 Aligned_cols=63 Identities=11% Similarity=0.099 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 213 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHL 275 (304)
Q Consensus 213 ~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~ 275 (304)
..+.+-..++..++..|.++..-...+..-+..-..-|+.++..+......++.....|.+-.
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556777777777777777777777777777777777777777777777777776633
No 95
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=38.16 E-value=42 Score=23.89 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 021981 270 ALLRHLN 276 (304)
Q Consensus 270 eL~ka~~ 276 (304)
|+..+.+
T Consensus 31 eil~ker 37 (64)
T COG4068 31 EILNKER 37 (64)
T ss_pred HHHHHHH
Confidence 4444433
No 96
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=38.09 E-value=53 Score=33.24 Aligned_cols=22 Identities=5% Similarity=0.244 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021981 252 RIDDNMDESLANVEGARNALLR 273 (304)
Q Consensus 252 ~Id~nv~~a~~nv~~g~~eL~k 273 (304)
.+...+++|.+.++++++-|.+
T Consensus 442 ~vn~sL~~A~~~L~~Sn~iL~~ 463 (490)
T PF00523_consen 442 QVNNSLNNAKDLLDKSNQILDS 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455677777777665543
No 97
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=38.02 E-value=3.4e+02 Score=27.60 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 212 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVE 265 (304)
Q Consensus 212 ~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~ 265 (304)
...+..-.+.+.+|...+.++.+++.+++..+.+|...++.|..++.+...-++
T Consensus 432 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~eq~~~~~~i~~~i~~i~~~~~ 485 (554)
T PRK15041 432 STLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQ 485 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666788999999999999999999999999999999888866554433
No 98
>PRK10884 SH3 domain-containing protein; Provisional
Probab=37.98 E-value=2.9e+02 Score=24.56 Aligned_cols=40 Identities=10% Similarity=0.028 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 234 GIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLR 273 (304)
Q Consensus 234 ~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~k 273 (304)
+.-.++..-+.+-...+..++..-......+.....++..
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444455555555555555555555555433
No 99
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=37.48 E-value=3.7e+02 Score=26.77 Aligned_cols=59 Identities=10% Similarity=0.103 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 214 YSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALL 272 (304)
Q Consensus 214 ~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ 272 (304)
.+.+-..+|...++.|.+..+-+..|-.++.++.+-|..|+..+..+...+..-...|.
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~ 97 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIA 97 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 34455557888888888888888888888888888888888887777665555544443
No 100
>PHA02414 hypothetical protein
Probab=37.23 E-value=2.1e+02 Score=22.58 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 221 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVE 265 (304)
Q Consensus 221 ~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~ 265 (304)
.-..++..+.||..|..-|-.-|.-+.|---.|.+.++.-..-|+
T Consensus 30 dn~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~ 74 (111)
T PHA02414 30 DNKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKIS 74 (111)
T ss_pred chHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHH
Confidence 456778888888888888777777788877778877766544443
No 101
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=35.92 E-value=1.7e+02 Score=27.62 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 219 AVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 267 (304)
Q Consensus 219 ~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g 267 (304)
.+.+..|++.+ ++||..+..-|.+-.+.|+.|..-+..++..|++=
T Consensus 24 ~~aL~~L~~v~---~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l 69 (297)
T PF11945_consen 24 ADALEYLDKVS---NDIFSRISARVERNRERLQAIQQRIEVAQAKIEKL 69 (297)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555443 56788888999999999999999888888888754
No 102
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=35.86 E-value=4.2e+02 Score=26.68 Aligned_cols=53 Identities=13% Similarity=0.138 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 213 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVE 265 (304)
Q Consensus 213 ~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~ 265 (304)
..+.+-.+.+.+|...+.++.+.+.+++..+.+|...++.|..++++....++
T Consensus 431 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~i~~~~~ 483 (553)
T PRK15048 431 VLVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDRVTQ 483 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556788888999999999999999999999999999888876665554
No 103
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=35.83 E-value=1.9e+02 Score=21.86 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=31.3
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 91 QDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKA 128 (304)
Q Consensus 91 ~q~~~h~~~Vv~~L~~~L~~~s~~Fk~vl~~r~~~~k~ 128 (304)
.....+......-|..-+..+...|+.++..+.+..++
T Consensus 63 ~~~~~~~k~~~~KL~~df~~~l~~fq~~q~~~~~~~k~ 100 (102)
T PF14523_consen 63 RSNDRQQKLQREKLSRDFKEALQEFQKAQRRYAEKEKQ 100 (102)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566777888899999999999999999999987765
No 104
>PRK00846 hypothetical protein; Provisional
Probab=35.81 E-value=1.9e+02 Score=21.72 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 221 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 267 (304)
Q Consensus 221 ~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g 267 (304)
.|..||..+.-.-....+|+..|..|...|+++...+.--...++..
T Consensus 14 Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 14 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46667777777777777888888999999999888777666655544
No 105
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=35.77 E-value=1.3e+02 Score=29.17 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 225 VESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLAN 263 (304)
Q Consensus 225 ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~n 263 (304)
+...+.+...+|.++-.....-||.--++++-.+....+
T Consensus 111 ls~al~~~~~~fp~~~~~li~~GE~sG~L~~~l~~la~~ 149 (399)
T PRK10573 111 FSEALLQWPQVFPPLYQALIATGELTGKLDECCFQLARQ 149 (399)
T ss_pred HHHHHHhCcCcCCHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 444444444445444333334555555555544444443
No 106
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=35.58 E-value=1.7e+02 Score=22.57 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHHHHh
Q 021981 260 SLANVEGARNALLRHLNQI-SSNRWLMIKIFAVIIFFLTVFMFFV 303 (304)
Q Consensus 260 a~~nv~~g~~eL~ka~~~~-~~~r~~~~~i~~iliv~~~~~~~~~ 303 (304)
|..-+--+..-+..|.+-+ .++.|-=+...+++=+.+++|++|+
T Consensus 36 a~afi~Va~~~i~~y~eir~gK~~W~~fg~~~vVGvvLlv~viwL 80 (87)
T PF11190_consen 36 AAAFIVVAKAAISTYNEIRDGKKTWGDFGATVVVGVVLLVFVIWL 80 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccHHHhhhHHHHHHHHHHHHHHH
Confidence 3334444454555665533 3445533333333333344444443
No 107
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.54 E-value=1.2e+02 Score=29.85 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 229 ITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVE 265 (304)
Q Consensus 229 i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~ 265 (304)
+.....+|.++-.....-||.--+++.-.+...+|.+
T Consensus 114 l~~~~~~F~~~~~~~v~~gE~~G~L~~~l~~la~y~e 150 (397)
T COG1459 114 LAQLPGVFPDLYVAMVAAGERSGNLDEVLQRLAKYLE 150 (397)
T ss_pred HHhCcccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344444444444444455555555544444444444
No 108
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=34.86 E-value=2.3e+02 Score=23.54 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=21.8
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHH
Q 021981 46 SSRSEFNKKASRIGLGIHEASQKIARL 72 (304)
Q Consensus 46 ~~~seF~~~A~~I~~~i~~~~~kL~kL 72 (304)
.+..+|.....+.+++|..+...++.|
T Consensus 62 ~~~~~~~~~~~elA~dIi~kakqIe~L 88 (144)
T PF11221_consen 62 DPPEEFEENIKELATDIIRKAKQIEYL 88 (144)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999888544
No 109
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=33.54 E-value=49 Score=25.97 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhccCchh
Q 021981 267 ARNALLRHLNQISSNRWL 284 (304)
Q Consensus 267 g~~eL~ka~~~~~~~r~~ 284 (304)
|..-|...+....+++|-
T Consensus 33 G~~YL~~~y~y~~sh~WR 50 (103)
T PF06422_consen 33 GDDYLEESYGYSYSHRWR 50 (103)
T ss_pred HHHHHhhhccccccchhh
Confidence 445566666766777774
No 110
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=33.48 E-value=3.2e+02 Score=24.44 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 224 NVESTITELGGIFTHLATMVA-------------QQGELAIRIDDNMDESLANVEGARNALLRHLNQ 277 (304)
Q Consensus 224 ~ie~~i~eL~~if~~la~~V~-------------~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~ 277 (304)
.-|+.|.+|.-||..|.+++. -++.+|..-..-|++-..+.+++.+-|...++.
T Consensus 103 ~~e~Kvedi~tifvnlHHLiNeyRPhQaResLi~lmE~Qi~~~~~~ve~~kk~~~~~~e~l~d~~~t 169 (223)
T KOG0570|consen 103 MREEKVEDIRTIFVNLHHLINEYRPHQARESLIMLMERQIEQRSDIVEDFKKHLRQVREVLDDQFQT 169 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788888888888887765 355566666666666666666666666555553
No 111
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=32.74 E-value=1.8e+02 Score=20.47 Aligned_cols=22 Identities=9% Similarity=0.363 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021981 216 QSRAVALHNVESTITELGGIFT 237 (304)
Q Consensus 216 ~~R~~~i~~ie~~i~eL~~if~ 237 (304)
++-.+++..|+.++.+|-.||.
T Consensus 24 ~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 24 EEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555554443
No 112
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=32.72 E-value=53 Score=24.35 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=5.6
Q ss_pred hhHHHHHHHHHHH
Q 021981 283 WLMIKIFAVIIFF 295 (304)
Q Consensus 283 ~~~~~i~~iliv~ 295 (304)
+++.+|+++++++
T Consensus 51 ~ii~ii~v~ii~~ 63 (72)
T PF12575_consen 51 LIISIIFVLIIVL 63 (72)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444443333
No 113
>PHA02844 putative transmembrane protein; Provisional
Probab=32.06 E-value=56 Score=24.33 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=6.2
Q ss_pred hhHHHHHHHHHHHH
Q 021981 283 WLMIKIFAVIIFFL 296 (304)
Q Consensus 283 ~~~~~i~~iliv~~ 296 (304)
+.-..+++++++++
T Consensus 45 ~~~~~~~ii~i~~v 58 (75)
T PHA02844 45 SSSTKIWILTIIFV 58 (75)
T ss_pred ChhHHHHHHHHHHH
Confidence 44444444443333
No 114
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=31.34 E-value=50 Score=25.19 Aligned_cols=16 Identities=19% Similarity=0.692 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHH
Q 021981 284 LMIKIFAVIIFFLTVF 299 (304)
Q Consensus 284 ~~~~i~~iliv~~~~~ 299 (304)
.|+++++|||.++++|
T Consensus 29 tILivLVIIiLlImlf 44 (85)
T PF10717_consen 29 TILIVLVIIILLIMLF 44 (85)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567776655555444
No 115
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=31.27 E-value=3.4e+02 Score=23.32 Aligned_cols=72 Identities=19% Similarity=0.175 Sum_probs=56.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 021981 48 RSEFNKKASRIGLGIHEASQKIARLAKYLQTLQNLEIV-EGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVL 119 (304)
Q Consensus 48 ~seF~~~A~~I~~~i~~~~~kL~kL~~LLq~l~~~~~~-~~~~~~q~~~h~~~Vv~~L~~~L~~~s~~Fk~vl 119 (304)
.+++...+..+...+......|..|..-|+.|.....+ +|+.....+.|..+|...|-..+..+...|...+
T Consensus 5 ~~el~~~~~~~~~~~~~~~~~l~~l~~ai~~~~~~~~~LkGka~dsiK~y~~~vh~pll~~~~~~~~~~~~~l 77 (204)
T PF04740_consen 5 VSELHSQAESTNSSLKELKEQLESLQKAINQFISSESSLKGKAYDSIKNYFSEVHIPLLQGLILLLEEYQEAL 77 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888999999999999998888888888876653 3445567888888888888777777777777766
No 116
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=31.09 E-value=1.5e+02 Score=27.05 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 021981 286 IKIFAVIIFFLTVFMF 301 (304)
Q Consensus 286 ~~i~~iliv~~~~~~~ 301 (304)
+++++.+||+.+.|+=
T Consensus 203 ~l~iG~iIi~tLtYvG 218 (232)
T PF09577_consen 203 MLSIGGIIIATLTYVG 218 (232)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444556666666653
No 117
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=31.09 E-value=3.3e+02 Score=23.09 Aligned_cols=57 Identities=12% Similarity=0.230 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 212 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGAR 268 (304)
Q Consensus 212 ~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~ 268 (304)
...+.+-.+.+..|...+.++...+.+++..+.+|.+.+..|...+.+...-++...
T Consensus 127 ~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~ 183 (213)
T PF00015_consen 127 SESVEETSESLEEIAESVEEISDSIEEISESAEEQSESIEQINESIEEISEISEQIS 183 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhcchhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566788888888888888888888888888888888876655544444433
No 118
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=31.03 E-value=1.8e+02 Score=19.95 Aligned_cols=55 Identities=9% Similarity=0.165 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 214 YSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGAR 268 (304)
Q Consensus 214 ~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~ 268 (304)
.|..-...|..+-.-..+|+.+-.+=+.+|..=+.-+++...++..+...+..+.
T Consensus 5 ~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~ 59 (63)
T PF05739_consen 5 ELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKAL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455555545555555555555555555555555554443
No 119
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=30.80 E-value=57 Score=26.69 Aligned_cols=7 Identities=0% Similarity=0.515 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 021981 296 LTVFMFF 302 (304)
Q Consensus 296 ~~~~~~~ 302 (304)
+|+||.|
T Consensus 80 ~Illi~y 86 (122)
T PF01102_consen 80 IILLISY 86 (122)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344444
No 120
>PF15106 TMEM156: TMEM156 protein family
Probab=30.76 E-value=52 Score=29.51 Aligned_cols=13 Identities=15% Similarity=0.764 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 021981 290 AVIIFFLTVFMFF 302 (304)
Q Consensus 290 ~iliv~~~~~~~~ 302 (304)
++++||+|+|+++
T Consensus 183 llVfiflii~iI~ 195 (226)
T PF15106_consen 183 LLVFIFLIILIIY 195 (226)
T ss_pred HHHHHHHHHHHHH
Confidence 3344555555543
No 121
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=30.43 E-value=2.6e+02 Score=21.65 Aligned_cols=56 Identities=9% Similarity=0.131 Sum_probs=35.9
Q ss_pred HHhhhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 203 MLQQVVPRQENYSQSRAV----ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLA 262 (304)
Q Consensus 203 ~q~ql~e~~~~~l~~R~~----~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~ 262 (304)
..+.+++..+.....++. .+..|+..+.+|++.+..|...+ ..||.||..|..-..
T Consensus 21 ~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l----~~Id~Ie~~V~~LE~ 80 (99)
T PF10046_consen 21 EDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYL----QQIDQIEEQVTELEQ 80 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 345556554444444444 45667777888888887766555 578888888765433
No 122
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=30.20 E-value=57 Score=31.80 Aligned_cols=27 Identities=11% Similarity=0.063 Sum_probs=15.2
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHHH
Q 021981 275 LNQISSNRWLMIKIFAVIIFFLTVFMF 301 (304)
Q Consensus 275 ~~~~~~~r~~~~~i~~iliv~~~~~~~ 301 (304)
+.-..++||+|++++++++++.++|.+
T Consensus 33 l~~L~r~k~~Il~~~~~~~~~g~~ya~ 59 (377)
T PRK10381 33 ISVLWKAKKTIIAITFAFACAGLLISF 59 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445667776666655555555543
No 123
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=30.14 E-value=3.5e+02 Score=26.88 Aligned_cols=7 Identities=0% Similarity=-0.187 Sum_probs=2.6
Q ss_pred hhHHHHH
Q 021981 283 WLMIKIF 289 (304)
Q Consensus 283 ~~~~~i~ 289 (304)
|+++.++
T Consensus 152 ~~~~~~~ 158 (565)
T PRK10935 152 AISLLGL 158 (565)
T ss_pred HHHHHHH
Confidence 3333333
No 124
>PHA02657 hypothetical protein; Provisional
Probab=29.34 E-value=67 Score=24.64 Aligned_cols=17 Identities=18% Similarity=0.608 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021981 286 IKIFAVIIFFLTVFMFF 302 (304)
Q Consensus 286 ~~i~~iliv~~~~~~~~ 302 (304)
+.+|+++|+|+++.++|
T Consensus 30 itvfv~vI~il~flLLY 46 (95)
T PHA02657 30 FTIFIFVVCILIYLLIY 46 (95)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 125
>COG4640 Predicted membrane protein [Function unknown]
Probab=29.28 E-value=81 Score=31.03 Aligned_cols=8 Identities=13% Similarity=-0.010 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 021981 266 GARNALLR 273 (304)
Q Consensus 266 ~g~~eL~k 273 (304)
+|++.+-.
T Consensus 31 qan~~tn~ 38 (465)
T COG4640 31 QANKSTNE 38 (465)
T ss_pred hhhHHHHH
Confidence 34444444
No 126
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=29.28 E-value=49 Score=29.70 Aligned_cols=16 Identities=25% Similarity=0.492 Sum_probs=6.8
Q ss_pred HHHHHHH-HHHHHHHHH
Q 021981 285 MIKIFAV-IIFFLTVFM 300 (304)
Q Consensus 285 ~~~i~~i-liv~~~~~~ 300 (304)
|++|++| ++|..++|+
T Consensus 133 ClIIIAVLfLICT~LfL 149 (227)
T PF05399_consen 133 CLIIIAVLFLICTLLFL 149 (227)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 4444444 333344443
No 127
>PHA02650 hypothetical protein; Provisional
Probab=29.14 E-value=72 Score=24.09 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=8.3
Q ss_pred CchhHHHHHHHHHHHH
Q 021981 281 NRWLMIKIFAVIIFFL 296 (304)
Q Consensus 281 ~r~~~~~i~~iliv~~ 296 (304)
..|.-..+++++++++
T Consensus 44 ~~~~~~~~~ii~i~~v 59 (81)
T PHA02650 44 VSWFNGQNFIFLIFSL 59 (81)
T ss_pred cCCchHHHHHHHHHHH
Confidence 4466666655544333
No 128
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=29.10 E-value=56 Score=24.69 Aligned_cols=10 Identities=30% Similarity=0.597 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 021981 287 KIFAVIIFFL 296 (304)
Q Consensus 287 ~i~~iliv~~ 296 (304)
.++++.+||+
T Consensus 11 ~v~GM~~VF~ 20 (82)
T TIGR01195 11 TVLGMGIVFL 20 (82)
T ss_pred HHHHHHHHHH
Confidence 3343333333
No 129
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=29.07 E-value=34 Score=32.09 Aligned_cols=18 Identities=17% Similarity=0.471 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021981 285 MIKIFAVIIFFLTVFMFF 302 (304)
Q Consensus 285 ~~~i~~iliv~~~~~~~~ 302 (304)
|++|-+|++++||.|++|
T Consensus 281 il~IG~vl~i~~Ig~~if 298 (305)
T PF04639_consen 281 ILIIGGVLLIVFIGYFIF 298 (305)
T ss_pred HHHHHHHHHHHHhhheee
Confidence 344444444444444443
No 130
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=28.78 E-value=96 Score=19.77 Aligned_cols=11 Identities=45% Similarity=1.201 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 021981 290 AVIIFFLTVFM 300 (304)
Q Consensus 290 ~iliv~~~~~~ 300 (304)
.+++.|+.+|+
T Consensus 10 ~vV~ffv~LFi 20 (36)
T PF02532_consen 10 TVVIFFVSLFI 20 (36)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHh
Confidence 33444444444
No 131
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=28.39 E-value=87 Score=18.96 Aligned_cols=11 Identities=9% Similarity=0.679 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 021981 292 IIFFLTVFMFF 302 (304)
Q Consensus 292 liv~~~~~~~~ 302 (304)
++++++.+++|
T Consensus 11 lv~lLl~YLvY 21 (29)
T PRK14750 11 LVLLLLGYLVY 21 (29)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 132
>COG4499 Predicted membrane protein [Function unknown]
Probab=28.29 E-value=1e+02 Score=30.31 Aligned_cols=11 Identities=9% Similarity=0.425 Sum_probs=5.9
Q ss_pred HhccCchhHHH
Q 021981 277 QISSNRWLMIK 287 (304)
Q Consensus 277 ~~~~~r~~~~~ 287 (304)
.+.+.+|-+.+
T Consensus 211 ~VpK~k~~ifk 221 (434)
T COG4499 211 FVPKKKYTIFK 221 (434)
T ss_pred ecccccceehh
Confidence 45666664433
No 133
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=28.23 E-value=51 Score=22.68 Aligned_cols=17 Identities=29% Similarity=0.768 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021981 285 MIKIFAVIIFFLTVFMF 301 (304)
Q Consensus 285 ~~~i~~iliv~~~~~~~ 301 (304)
+++++-++|+|+.+|++
T Consensus 4 ilKFvY~mIiflslflv 20 (54)
T PF07127_consen 4 ILKFVYAMIIFLSLFLV 20 (54)
T ss_pred chhhHHHHHHHHHHHHh
Confidence 34555555555555554
No 134
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=28.00 E-value=4.4e+02 Score=23.59 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 021981 53 KKASRIGLGIHEASQKIARLAKY--LQTLQNL 82 (304)
Q Consensus 53 ~~A~~I~~~i~~~~~kL~kL~~L--Lq~l~~~ 82 (304)
.....+...|....+.|.+++-. |+.|.+.
T Consensus 9 ~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~ 40 (207)
T PF05546_consen 9 FYMDSLQETIFTASQALNDVTGYSEIEKLKKS 40 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 33444444444444444444433 4444433
No 135
>PHA03240 envelope glycoprotein M; Provisional
Probab=27.92 E-value=57 Score=29.42 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=9.5
Q ss_pred cCchhHHHHHHHHHHHHH
Q 021981 280 SNRWLMIKIFAVIIFFLT 297 (304)
Q Consensus 280 ~~r~~~~~i~~iliv~~~ 297 (304)
-.--.+++|++||||++|
T Consensus 209 ~aaH~~WIiilIIiIiII 226 (258)
T PHA03240 209 DAAHIAWIFIAIIIIIVI 226 (258)
T ss_pred ccchHhHHHHHHHHHHHH
Confidence 345566666665553333
No 136
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=27.92 E-value=3.5 Score=31.28 Aligned_cols=9 Identities=33% Similarity=0.844 Sum_probs=0.0
Q ss_pred hccCchhHH
Q 021981 278 ISSNRWLMI 286 (304)
Q Consensus 278 ~~~~r~~~~ 286 (304)
+++.+|+.|
T Consensus 62 rkKrrwlwL 70 (81)
T PF14812_consen 62 RKKRRWLWL 70 (81)
T ss_dssp ---------
T ss_pred cccchhHHH
Confidence 344555543
No 137
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=27.18 E-value=3e+02 Score=26.50 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 235 IFTHLATMVAQQGELAIRIDDNMDESLANVE 265 (304)
Q Consensus 235 if~~la~~V~~Qge~id~Id~nv~~a~~nv~ 265 (304)
+|-++......-||.-.++|.-...+....+
T Consensus 325 ~fp~~~~~mi~~GE~sG~L~~~L~~~a~~~~ 355 (399)
T TIGR02120 325 LFPPLLVHMIASGEKSGQLETMLERAADNQE 355 (399)
T ss_pred CCCHHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence 4555555555667777777766666555544
No 138
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=26.78 E-value=2.6e+02 Score=27.93 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 212 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVE 265 (304)
Q Consensus 212 ~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~ 265 (304)
..+-..+..+.+.+++.-..+|.|..+.-.|+..|...+-+.|.++.-....|.
T Consensus 47 ~aleetk~~ttQslasvaYqIN~la~~~l~mL~lQ~~~L~~mEs~vn~isq~V~ 100 (483)
T KOG2546|consen 47 AALEETKAYTTQSLASVAYQINTLAGHALRMLDLQAPQLRYMESQVNHISQTVD 100 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhe
Confidence 344567888999999999999999999999999999999999999987776664
No 139
>PHA03054 IMV membrane protein; Provisional
Probab=26.02 E-value=91 Score=23.02 Aligned_cols=20 Identities=10% Similarity=0.240 Sum_probs=10.8
Q ss_pred CchhHHHHHHHHHHHHHHHH
Q 021981 281 NRWLMIKIFAVIIFFLTVFM 300 (304)
Q Consensus 281 ~r~~~~~i~~iliv~~~~~~ 300 (304)
++|.-..+++++++++++.+
T Consensus 43 ~~~~~~~~~ii~l~~v~~~~ 62 (72)
T PHA03054 43 TGCWGWYWLIIIFFIVLILL 62 (72)
T ss_pred cCCchHHHHHHHHHHHHHHH
Confidence 45666666666654444333
No 140
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=25.82 E-value=2.3e+02 Score=27.29 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 229 ITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEG 266 (304)
Q Consensus 229 i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~ 266 (304)
+.+...+|.++..-+..-||.--++++.......+.+.
T Consensus 117 l~~~~~~fp~~~~~~i~~GE~sG~L~~~L~~~a~~~~~ 154 (399)
T TIGR02120 117 LAQHPRDFPPLYRALVAAGEASGALDAVLERLADYLEE 154 (399)
T ss_pred HHhCcccCCHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 33333444444443344455444555555555444443
No 141
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=25.64 E-value=93 Score=21.42 Aligned_cols=20 Identities=25% Similarity=0.630 Sum_probs=11.4
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 021981 282 RWLMIKIFAVIIFFLTVFMFF 302 (304)
Q Consensus 282 r~~~~~i~~iliv~~~~~~~~ 302 (304)
||+ +.+|.+.|||.++|+++
T Consensus 22 ~ww-~~~f~~tivfa~~Y~~~ 41 (51)
T PF14715_consen 22 RWW-LWLFYGTIVFAVGYLVL 41 (51)
T ss_pred HHH-HHHHHHHHHHHHHHHHH
Confidence 454 45555566776666543
No 142
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=25.38 E-value=3.5e+02 Score=22.02 Aligned_cols=17 Identities=18% Similarity=-0.035 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhccCchh
Q 021981 268 RNALLRHLNQISSNRWL 284 (304)
Q Consensus 268 ~~eL~ka~~~~~~~r~~ 284 (304)
..|+.-..+|.+--+|.
T Consensus 49 ~~el~~L~rR~~li~~a 65 (130)
T PF11026_consen 49 RRELRILRRRARLIRRA 65 (130)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55665555555444553
No 143
>PHA02819 hypothetical protein; Provisional
Probab=25.20 E-value=98 Score=22.83 Aligned_cols=19 Identities=0% Similarity=0.060 Sum_probs=9.6
Q ss_pred CchhHHHHHHHHHHHHHHH
Q 021981 281 NRWLMIKIFAVIIFFLTVF 299 (304)
Q Consensus 281 ~r~~~~~i~~iliv~~~~~ 299 (304)
+++....+++++++++++.
T Consensus 41 ~~~~~~~~~ii~l~~~~~~ 59 (71)
T PHA02819 41 KKSFLRYYLIIGLVTIVFV 59 (71)
T ss_pred cCChhHHHHHHHHHHHHHH
Confidence 3455555555554444433
No 144
>PTZ00046 rifin; Provisional
Probab=25.10 E-value=3.3e+02 Score=26.45 Aligned_cols=21 Identities=14% Similarity=0.531 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 021981 283 WLMIKIFAVIIFFLTVFMFFV 303 (304)
Q Consensus 283 ~~~~~i~~iliv~~~~~~~~~ 303 (304)
.++.-|++||+|.+|.+|+||
T Consensus 316 aIiaSiiAIvVIVLIMvIIYL 336 (358)
T PTZ00046 316 AIIASIVAIVVIVLIMVIIYL 336 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554
No 145
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=24.69 E-value=1e+02 Score=21.85 Aligned_cols=11 Identities=36% Similarity=0.809 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 021981 292 IIFFLTVFMFF 302 (304)
Q Consensus 292 liv~~~~~~~~ 302 (304)
+++|++.|-+|
T Consensus 16 ~vl~~~~Ftl~ 26 (58)
T PF13314_consen 16 IVLFGASFTLF 26 (58)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 146
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=24.64 E-value=80 Score=23.34 Aligned_cols=15 Identities=7% Similarity=0.073 Sum_probs=7.3
Q ss_pred HHHHHHhccCchhHH
Q 021981 272 LRHLNQISSNRWLMI 286 (304)
Q Consensus 272 ~ka~~~~~~~r~~~~ 286 (304)
++.+.++++..-+++
T Consensus 6 rk~Y~rrSr~~efLF 20 (72)
T PF13198_consen 6 RKEYPRRSRKTEFLF 20 (72)
T ss_pred HHHccchhHHHHHHH
Confidence 445555555544443
No 147
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.42 E-value=1.8e+02 Score=26.27 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 021981 62 IHEASQKIARLAKYLQTLQNLEI 84 (304)
Q Consensus 62 i~~~~~kL~kL~~LLq~l~~~~~ 84 (304)
|.++..+|++...||.+..-..+
T Consensus 38 l~~i~~~leEa~ell~qMdlEvr 60 (220)
T KOG1666|consen 38 LSEIDSKLEEANELLDQMDLEVR 60 (220)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 44555556666666666554444
No 148
>TIGR03715 KxYKxGKxW KxYKxGKxW signal peptide. This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus.
Probab=24.36 E-value=56 Score=19.51 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=9.8
Q ss_pred HhccCchhHHHHHHH
Q 021981 277 QISSNRWLMIKIFAV 291 (304)
Q Consensus 277 ~~~~~r~~~~~i~~i 291 (304)
++++++|+...+..+
T Consensus 7 yKsGK~Wv~a~~~~~ 21 (29)
T TIGR03715 7 YKSGKQWVFAAITTL 21 (29)
T ss_pred EecccHHHHHHHHHH
Confidence 467788876655543
No 149
>PHA02955 hypothetical protein; Provisional
Probab=24.28 E-value=78 Score=28.43 Aligned_cols=19 Identities=21% Similarity=0.670 Sum_probs=11.6
Q ss_pred cCchhHHHHHHHHHHHHHH
Q 021981 280 SNRWLMIKIFAVIIFFLTV 298 (304)
Q Consensus 280 ~~r~~~~~i~~iliv~~~~ 298 (304)
..+|+++.+++++++|+++
T Consensus 178 ~~~w~ii~~v~ii~~~v~l 196 (213)
T PHA02955 178 SIKWFIIYIVLCLLILIIL 196 (213)
T ss_pred CCcchhHHHHHHHHHHHHH
Confidence 4688876666665555443
No 150
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=24.27 E-value=3e+02 Score=20.31 Aligned_cols=14 Identities=14% Similarity=0.043 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 021981 260 SLANVEGARNALLR 273 (304)
Q Consensus 260 a~~nv~~g~~eL~k 273 (304)
....|+..+.|+.+
T Consensus 24 iEeKvEf~~~Ei~Q 37 (70)
T PF04210_consen 24 IEEKVEFTNAEIAQ 37 (70)
T ss_pred HHHHHHhHHHHHHH
Confidence 33444444555533
No 151
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=24.01 E-value=90 Score=20.04 Aligned_cols=8 Identities=13% Similarity=0.684 Sum_probs=3.5
Q ss_pred chhHHHHH
Q 021981 282 RWLMIKIF 289 (304)
Q Consensus 282 r~~~~~i~ 289 (304)
.|+.+.++
T Consensus 15 ~Wi~F~l~ 22 (38)
T PF09125_consen 15 GWIAFALA 22 (38)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 35544333
No 152
>COG4218 MtrF Tetrahydromethanopterin S-methyltransferase, subunit F [Coenzyme metabolism]
Probab=23.60 E-value=2e+02 Score=21.23 Aligned_cols=16 Identities=19% Similarity=0.125 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 021981 249 LAIRIDDNMDESLANV 264 (304)
Q Consensus 249 ~id~Id~nv~~a~~nv 264 (304)
.+++||..|++.....
T Consensus 18 n~~~id~yVediryr~ 33 (73)
T COG4218 18 NTDRIDTYVEDIRYRS 33 (73)
T ss_pred ChhHHHHHHHHHHHHH
Confidence 4677887777766544
No 153
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=23.54 E-value=4.9e+02 Score=22.55 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 219 AVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLN 276 (304)
Q Consensus 219 ~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~ 276 (304)
...+.++...+.++...+.+++..+.+|...++.|-..+.+....+............
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~~ 60 (262)
T smart00283 3 SEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGRE 60 (262)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 154
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=23.36 E-value=88 Score=26.30 Aligned_cols=26 Identities=12% Similarity=-0.111 Sum_probs=15.0
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHhC
Q 021981 279 SSNRWLMIKIFAVIIFFLTVFMFFVA 304 (304)
Q Consensus 279 ~~~r~~~~~i~~iliv~~~~~~~~~a 304 (304)
++..|.+++++++.+|++|++++|.+
T Consensus 114 ~~~~~~~i~~~i~g~ll~i~~giy~~ 139 (145)
T PF10661_consen 114 KKPISPTILLSIGGILLAICGGIYVV 139 (145)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445567778888864
No 155
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=22.99 E-value=4.8e+02 Score=22.26 Aligned_cols=13 Identities=15% Similarity=-0.159 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 021981 229 ITELGGIFTHLAT 241 (304)
Q Consensus 229 i~eL~~if~~la~ 241 (304)
+..|.++...|+.
T Consensus 107 ~eiL~~lG~~LG~ 119 (170)
T TIGR02833 107 KEILLQFGKTLGE 119 (170)
T ss_pred HHHHHHHHHHHCc
Confidence 3444555555555
No 156
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=22.82 E-value=2.8e+02 Score=19.53 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 249 LAIRIDDNMDESLANVEGARNALLRHLNQ 277 (304)
Q Consensus 249 ~id~Id~nv~~a~~nv~~g~~eL~ka~~~ 277 (304)
.|+.|...|......|..+..|-..|-+|
T Consensus 18 kvdqLs~dv~~lr~~v~~ak~EAaRAN~R 46 (56)
T PF04728_consen 18 KVDQLSSDVNALRADVQAAKEEAARANQR 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555566666666666555443
No 157
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=22.59 E-value=4.1e+02 Score=25.83 Aligned_cols=21 Identities=19% Similarity=0.532 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 021981 283 WLMIKIFAVIIFFLTVFMFFV 303 (304)
Q Consensus 283 ~~~~~i~~iliv~~~~~~~~~ 303 (304)
.++.-|++|++|.++++|+||
T Consensus 311 ~IiaSiIAIvvIVLIMvIIYL 331 (353)
T TIGR01477 311 PIIASIIAILIIVLIMVIIYL 331 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554
No 158
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=22.54 E-value=79 Score=30.28 Aligned_cols=17 Identities=24% Similarity=0.552 Sum_probs=8.2
Q ss_pred HhccCchhHHHHHHHHH
Q 021981 277 QISSNRWLMIKIFAVII 293 (304)
Q Consensus 277 ~~~~~r~~~~~i~~ili 293 (304)
+.+..+|++.+..+|++
T Consensus 106 ~~~~~~~~~~~~~lv~~ 122 (331)
T PRK10856 106 RKKRDGWLMTFTWLVLF 122 (331)
T ss_pred ccccCCchHHHHHHHHH
Confidence 44455566544444333
No 159
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=22.42 E-value=71 Score=20.32 Aligned_cols=18 Identities=17% Similarity=0.242 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021981 285 MIKIFAVIIFFLTVFMFF 302 (304)
Q Consensus 285 ~~~i~~iliv~~~~~~~~ 302 (304)
+.++++++++++.+.-+|
T Consensus 12 iT~v~v~lM~i~tvg~v~ 29 (35)
T PF13253_consen 12 ITMVVVWLMLILTVGSVV 29 (35)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455555444443
No 160
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=22.37 E-value=3.9e+02 Score=21.74 Aligned_cols=45 Identities=11% Similarity=0.085 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 232 LGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLN 276 (304)
Q Consensus 232 L~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~ 276 (304)
|.+.|..|..||..=...++.+|...-.|-..+..+..+|.+..+
T Consensus 2 lKdt~~kmkeL~e~~~~D~~K~EKGNKAAGtRaRK~sleLeKLaK 46 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAEKAEKGNKAAGTRARKASLELEKLAK 46 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 445566666666544444556788888888889888888888654
No 161
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=22.33 E-value=2.2e+02 Score=25.26 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021981 214 YSQSRAVALHNVESTITEL 232 (304)
Q Consensus 214 ~l~~R~~~i~~ie~~i~eL 232 (304)
-.++-.+++.+++..|.++
T Consensus 102 Tw~~W~~~i~~~~~~i~~l 120 (204)
T PF00517_consen 102 TWQQWEKEISNYTGNIYNL 120 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcccHHHHHHH
Confidence 3455666777777766655
No 162
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=22.28 E-value=4.9e+02 Score=22.21 Aligned_cols=13 Identities=23% Similarity=-0.000 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 021981 229 ITELGGIFTHLAT 241 (304)
Q Consensus 229 i~eL~~if~~la~ 241 (304)
+..|.++...|+.
T Consensus 108 ~eiL~~lg~~LG~ 120 (171)
T PRK08307 108 IEILLQFGKTLGQ 120 (171)
T ss_pred HHHHHHHHHHHCc
Confidence 3344455555555
No 163
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=22.27 E-value=78 Score=25.10 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=11.0
Q ss_pred HHHhccCchh-HHHHHHHHHHHHHHH
Q 021981 275 LNQISSNRWL-MIKIFAVIIFFLTVF 299 (304)
Q Consensus 275 ~~~~~~~r~~-~~~i~~iliv~~~~~ 299 (304)
++..++.... |+++++||-|++++|
T Consensus 8 ~~~~kgFTLvEMLiVLlIISiLlLl~ 33 (107)
T COG4537 8 LKHKKGFTLVEMLIVLLIISILLLLF 33 (107)
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHH
Confidence 3344455443 344444444444444
No 164
>PF06198 DUF999: Protein of unknown function (DUF999); InterPro: IPR009340 This is a family of conserved Schizosaccharomyces pombe proteins with unknown function.
Probab=22.24 E-value=45 Score=26.80 Aligned_cols=21 Identities=33% Similarity=0.730 Sum_probs=15.6
Q ss_pred HhccCchhHHHHHHHHHHHHH
Q 021981 277 QISSNRWLMIKIFAVIIFFLT 297 (304)
Q Consensus 277 ~~~~~r~~~~~i~~iliv~~~ 297 (304)
.+++.||-+++|-.|++||.+
T Consensus 81 t~~~~rw~lliiw~ii~v~~i 101 (143)
T PF06198_consen 81 TRSKSRWPLLIIWSIIIVFAI 101 (143)
T ss_pred cccccccHHHHHHHHHHheee
Confidence 356779988888888777754
No 165
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=21.89 E-value=2.7e+02 Score=23.66 Aligned_cols=37 Identities=16% Similarity=0.088 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 230 TELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGAR 268 (304)
Q Consensus 230 ~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~ 268 (304)
..|.++...|+. .+-+.++..|+--.++-....+.+.
T Consensus 108 e~L~~lg~~LG~--~D~~~Q~k~i~l~~~~L~~~~~~a~ 144 (170)
T PF09548_consen 108 EILLELGKSLGY--SDREMQEKHIELYLEQLEQQLEEAR 144 (170)
T ss_pred HHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433 3334444444444444333444333
No 166
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=21.83 E-value=3e+02 Score=26.07 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 107 KLMGATKELQDVLTTRTENIKAHE 130 (304)
Q Consensus 107 ~L~~~s~~Fk~vl~~r~~~~k~~~ 130 (304)
.++++...|.+.-+.|++.+.++.
T Consensus 36 eMK~Vme~F~rqTsQRF~EYdErm 59 (299)
T PF02009_consen 36 EMKSVMENFDRQTSQRFEEYDERM 59 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345555555555555555444443
No 167
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=21.83 E-value=5e+02 Score=23.48 Aligned_cols=28 Identities=7% Similarity=0.096 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 246 QGELAIRIDDNMDESLANVEGARNALLR 273 (304)
Q Consensus 246 Qge~id~Id~nv~~a~~nv~~g~~eL~k 273 (304)
=++-++|||..+.++.-++..-+..|.+
T Consensus 13 ~~~~L~rle~qi~q~~~~~~~~qs~l~~ 40 (251)
T COG5415 13 YTADLSRLESQIHQLDVALKKSQSILSQ 40 (251)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888887777766654
No 168
>PRK11637 AmiB activator; Provisional
Probab=21.66 E-value=7.6e+02 Score=24.12 Aligned_cols=66 Identities=6% Similarity=0.065 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 212 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQ 277 (304)
Q Consensus 212 ~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~ 277 (304)
...+.+-..++.+++..+..|..=...+..-+.+-...|+.++..+......+.....+|.+....
T Consensus 60 ~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 60 EKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555556666667777777777777777777666665543
No 169
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=21.53 E-value=3.3e+02 Score=27.48 Aligned_cols=46 Identities=22% Similarity=0.184 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 231 ELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLN 276 (304)
Q Consensus 231 eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~ 276 (304)
|+++|...|..|+.+=...+..++..+.+-+..++..+..|.--|.
T Consensus 179 E~g~L~~~~n~M~~~L~~~~~~l~~~~~~~t~~l~~~~~~l~~ly~ 224 (569)
T PRK10600 179 EMAMLGTALNNMSAELAESYAVLEQRVQEKTAGLEQKNQILSFLWQ 224 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666777777777777777788888777765443
No 170
>PRK10132 hypothetical protein; Provisional
Probab=21.43 E-value=4.2e+02 Score=21.06 Aligned_cols=18 Identities=11% Similarity=0.160 Sum_probs=12.6
Q ss_pred HHHHhccCchhHHHHHHH
Q 021981 274 HLNQISSNRWLMIKIFAV 291 (304)
Q Consensus 274 a~~~~~~~r~~~~~i~~i 291 (304)
+..+...|.|.-+.|-+.
T Consensus 78 ~~~~V~~~Pw~svgiaag 95 (108)
T PRK10132 78 ADTFVRERPWCSVGTAAA 95 (108)
T ss_pred HHHHHHhCcHHHHHHHHH
Confidence 445788899987766544
No 171
>COG0840 Tar Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=21.39 E-value=7e+02 Score=23.55 Aligned_cols=54 Identities=13% Similarity=0.235 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 215 SQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGAR 268 (304)
Q Consensus 215 l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~ 268 (304)
+.+-.+.+..|...+.+++++...++..+.+|...++.|..++.....-++...
T Consensus 326 ~~~~~~~~~~i~~~i~~i~~~~~~i~~~~~e~~~~~~~i~~~i~~i~~~~~~~~ 379 (408)
T COG0840 326 VEETGSSLGEIAAAIEEVSQLISEIAAATEEQTAVLEEINASIEELDDVTQENA 379 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444678888999999999999999999999999988888877776666555
No 172
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=21.38 E-value=84 Score=30.02 Aligned_cols=15 Identities=13% Similarity=0.565 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHh
Q 021981 289 FAVIIFFLTVFMFFV 303 (304)
Q Consensus 289 ~~iliv~~~~~~~~~ 303 (304)
+++++|++|||-+|+
T Consensus 163 i~l~vla~ivY~~~~ 177 (318)
T PF06682_consen 163 IFLLVLAFIVYSLFL 177 (318)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333444445555444
No 173
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=21.31 E-value=2.2e+02 Score=22.64 Aligned_cols=43 Identities=19% Similarity=0.127 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHHHH
Q 021981 260 SLANVEGARNALLRHLNQI-SSNRWLMIKIFAVIIFFLTVFMFF 302 (304)
Q Consensus 260 a~~nv~~g~~eL~ka~~~~-~~~r~~~~~i~~iliv~~~~~~~~ 302 (304)
+...+--+..-+.+|.+-+ .+..|-=+..++++=+.++++++|
T Consensus 52 a~aFi~Va~~a~~ty~Ei~~Gk~~W~~fg~~v~VGviLLv~vIw 95 (104)
T TIGR03745 52 AIAFIGVAYHALGTYHEIRTGKATWGDFGATVVVGAILLVVIIW 95 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhhHHhCcchhhhHhHHHHHHHH
Confidence 5556666666777777643 344564333333333334444444
No 174
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=21.29 E-value=6.3e+02 Score=22.99 Aligned_cols=34 Identities=12% Similarity=0.267 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Q 021981 263 NVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVF 299 (304)
Q Consensus 263 nv~~g~~eL~ka~~~~~~~r~~~~~i~~iliv~~~~~ 299 (304)
.|.+++++-+++++..... +..+|+|+++|++++
T Consensus 135 evK~~~E~y~k~~k~~~~g---i~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 135 EVKQSHEKYQKRQKSMYKG---IGAMLFVFMLFALVM 168 (230)
T ss_pred HHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHH
Confidence 3556666666655543222 345555555555554
No 175
>PF00895 ATP-synt_8: ATP synthase protein 8; InterPro: IPR001421 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 found in the F0 complex of mitochondrial F-ATPases from Metazoa. This subunit appears to be an integral component of the stator stalk in yeast mitochondrial F-ATPases []. The stator stalk is anchored in the membrane, and acts to prevent futile rotation of the ATPase subunits relative to the rotor during coupled ATP synthesis/hydrolysis. This subunit may have an analogous function in Metazoa. Subunit 8 differs in sequence between Metazoa, plants (IPR003319 from INTERPRO) and fungi (IPR009230 from INTERPRO). More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=21.10 E-value=1.3e+02 Score=20.03 Aligned_cols=8 Identities=25% Similarity=1.032 Sum_probs=3.4
Q ss_pred hhHHHHHH
Q 021981 283 WLMIKIFA 290 (304)
Q Consensus 283 ~~~~~i~~ 290 (304)
|+++.+++
T Consensus 9 W~~~f~~~ 16 (54)
T PF00895_consen 9 WFFLFLFF 16 (54)
T ss_pred HHHHHHHH
Confidence 44444443
No 176
>COG5346 Predicted membrane protein [Function unknown]
Probab=20.73 E-value=4.8e+02 Score=21.47 Aligned_cols=8 Identities=25% Similarity=0.795 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 021981 285 MIKIFAVI 292 (304)
Q Consensus 285 ~~~i~~il 292 (304)
|+.||++.
T Consensus 93 l~liFgi~ 100 (136)
T COG5346 93 LLLIFGIF 100 (136)
T ss_pred HHHHHHHH
Confidence 34444443
No 177
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=20.67 E-value=3.1e+02 Score=20.98 Aligned_cols=8 Identities=50% Similarity=0.522 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 021981 221 ALHNVEST 228 (304)
Q Consensus 221 ~i~~ie~~ 228 (304)
.+..+++.
T Consensus 20 ~le~ve~r 27 (85)
T PF15188_consen 20 RLEAVESR 27 (85)
T ss_pred HHHHHHHH
Confidence 34444433
No 178
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.59 E-value=4.7e+02 Score=21.26 Aligned_cols=79 Identities=9% Similarity=0.183 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCchhHHHHHHHHHHHHHHHH
Q 021981 224 NVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQ---ISSNRWLMIKIFAVIIFFLTVFM 300 (304)
Q Consensus 224 ~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~---~~~~r~~~~~i~~iliv~~~~~~ 300 (304)
+=|+.+..|.+=..-|-.+--+=|.-|+-=+.-++.-.+....-..-|..+..+ ..++-...++|-+++++++.+|+
T Consensus 33 ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~sg~~l~~~m~~f~lV~~fi 112 (118)
T KOG3385|consen 33 ENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARRSGISLLCWMAVFSLVAFFI 112 (118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 334444445444444444433333333333333344444444444455555442 33444455555555555555555
Q ss_pred HH
Q 021981 301 FF 302 (304)
Q Consensus 301 ~~ 302 (304)
+|
T Consensus 113 ~~ 114 (118)
T KOG3385|consen 113 LW 114 (118)
T ss_pred hh
Confidence 54
No 179
>PHA03046 Hypothetical protein; Provisional
Probab=20.50 E-value=5e+02 Score=21.57 Aligned_cols=53 Identities=8% Similarity=0.207 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 212 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANV 264 (304)
Q Consensus 212 ~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv 264 (304)
++.|..-.-.++.+---+.-|-.+|+.....-..=++.|+|+|.+++....++
T Consensus 76 DsFI~~d~~~iKd~vlRL~vlEK~~~~~i~~c~~~~~~i~RLE~H~ETlRk~M 128 (142)
T PHA03046 76 DSFIHKDEMDIKDFVLRLLVLEKLFQLSIKRCKSLNNIIKRLENHTETVRKNM 128 (142)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555678888888888999999988888899999999999988765544
No 180
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=20.37 E-value=1.7e+02 Score=26.90 Aligned_cols=35 Identities=17% Similarity=0.367 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhccCchhHHHHHHH
Q 021981 257 MDESLANVEGARNALLRHLN-QISSNRWLMIKIFAV 291 (304)
Q Consensus 257 v~~a~~nv~~g~~eL~ka~~-~~~~~r~~~~~i~~i 291 (304)
|+.=...++.|+++|.+-.+ ..+-+||+.++..++
T Consensus 99 v~~~~~~~e~a~~~l~~i~~~~~~y~~~l~~~~~g~ 134 (250)
T COG2966 99 VEHGRLDLEEAHKKLDEIQKQPLRYSRWLVLLMAGL 134 (250)
T ss_pred HHcCCCCHHHHHHHHHHhhhCccccccHHHHHHHHH
Confidence 33344566777777777553 345567765544443
No 181
>COG3462 Predicted membrane protein [Function unknown]
Probab=20.21 E-value=1.2e+02 Score=24.30 Aligned_cols=21 Identities=57% Similarity=1.306 Sum_probs=11.0
Q ss_pred chhHHHHH-HHHHHHHHHHHHH
Q 021981 282 RWLMIKIF-AVIIFFLTVFMFF 302 (304)
Q Consensus 282 r~~~~~i~-~iliv~~~~~~~~ 302 (304)
.|++.-|| +++++|+++|+-+
T Consensus 49 m~lImpI~~~vvli~lvvfm~~ 70 (117)
T COG3462 49 MWLIMPIFWAVVLIFLVVFMFY 70 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666 4444555555543
No 182
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=20.17 E-value=6.8e+02 Score=22.92 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 214 YSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLR 273 (304)
Q Consensus 214 ~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~k 273 (304)
+++.-.+....++..+.+|......+...+..=.+-+.+++.++.++...++.....+.+
T Consensus 97 E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 97 EIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556677777777777777777777777777777777777777777666666655
No 183
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=20.17 E-value=3.8e+02 Score=20.06 Aligned_cols=31 Identities=10% Similarity=0.250 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 247 GELAIRIDDNMDESLANVEGARNALLRHLNQ 277 (304)
Q Consensus 247 ge~id~Id~nv~~a~~nv~~g~~eL~ka~~~ 277 (304)
.-.+++++..++.+...+..|..+--+|.++
T Consensus 38 nAkv~qLe~dv~a~~~~~qAAk~eaarAn~r 68 (78)
T COG4238 38 NAKVDQLENDVNAMRSDVQAAKDEAARANQR 68 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 3456777788888888888877776666554
No 184
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=20.15 E-value=1.4e+02 Score=22.29 Aligned_cols=17 Identities=6% Similarity=0.024 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021981 249 LAIRIDDNMDESLANVE 265 (304)
Q Consensus 249 ~id~Id~nv~~a~~nv~ 265 (304)
.++.||.+.....-...
T Consensus 10 ~L~eiEr~L~~~DP~fa 26 (82)
T PF11239_consen 10 RLEEIERQLRADDPRFA 26 (82)
T ss_pred HHHHHHHHHHhcCcHHH
Confidence 77888877765544433
No 185
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=20.06 E-value=86 Score=24.02 Aligned_cols=7 Identities=43% Similarity=0.378 Sum_probs=2.7
Q ss_pred CchhHHH
Q 021981 281 NRWLMIK 287 (304)
Q Consensus 281 ~r~~~~~ 287 (304)
||+-+++
T Consensus 66 NrK~~~l 72 (85)
T PF15188_consen 66 NRKSMLL 72 (85)
T ss_pred hhhhHHH
Confidence 4433333
No 186
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=20.05 E-value=2.7e+02 Score=18.46 Aligned_cols=32 Identities=13% Similarity=0.188 Sum_probs=21.9
Q ss_pred Hhhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 204 LQQVVPR--QENYSQSRAVALHNVESTITELGGI 235 (304)
Q Consensus 204 q~ql~e~--~~~~l~~R~~~i~~ie~~i~eL~~i 235 (304)
|+.+++. .+.--..|.++|..++.++.||..=
T Consensus 4 Qi~~I~~~I~qAk~~~r~dEV~~L~~NL~EL~~e 37 (42)
T PF11464_consen 4 QINIIESYIKQAKAARRFDEVATLEENLRELQDE 37 (42)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 4545544 2444567889999999999998753
Done!