Query 021981
Match_columns 304
No_of_seqs 206 out of 1119
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 12:12:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021981.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021981hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xhe_B Syntaxin1; exocytosis, 99.9 4.9E-26 1.7E-30 209.9 6.6 196 45-282 40-279 (279)
2 3hd7_B Syntaxin-1A; membrane p 99.9 2.2E-23 7.5E-28 166.4 13.6 74 210-283 11-84 (109)
3 1dn1_B Syntaxin 1A, syntaxin b 99.9 2.9E-22 9.9E-27 183.6 10.1 203 45-286 27-266 (267)
4 1jth_B Syntaxin 1A; coiled-coi 99.9 8.6E-22 2.9E-26 147.7 10.4 74 213-286 3-76 (77)
5 2nps_B Syntaxin 13, vesicle-as 99.8 9.2E-21 3.1E-25 139.9 10.2 69 216-284 2-70 (71)
6 1sfc_B Protein (syntaxin 1A), 99.8 5.8E-20 2E-24 139.6 10.6 73 210-282 11-83 (83)
7 3b5n_B Protein SSO1; snare com 99.8 1.1E-19 3.6E-24 133.4 11.0 67 213-279 3-69 (69)
8 1n7s_B Syntaxin 1A; neuronal s 99.8 7.5E-19 2.6E-23 128.5 10.5 64 212-275 4-67 (68)
9 1gl2_B Syntaxin 7; membrane pr 99.8 3.7E-19 1.3E-23 129.0 8.4 64 213-276 2-65 (65)
10 3c98_B Syntaxin-1A; protein co 99.7 7.6E-18 2.6E-22 152.6 8.6 228 4-285 12-277 (279)
11 1fio_A SSO1 protein; four heli 99.5 2.3E-13 7.9E-18 118.4 11.4 159 48-247 4-196 (196)
12 3hd7_B Syntaxin-1A; membrane p 98.0 0.00015 5.2E-09 57.1 13.1 88 203-294 11-98 (109)
13 2nps_D Syntaxin-6; vesicle fus 97.7 0.00018 6.2E-09 53.7 8.7 72 203-281 9-80 (82)
14 1mqs_B SED5P, integral membran 97.5 2.3E-05 7.9E-10 52.7 0.5 23 3-25 6-28 (50)
15 3hd7_A Vesicle-associated memb 97.2 0.0055 1.9E-07 46.5 11.5 44 220-263 5-48 (91)
16 1sfc_D Protein (SNAP-25B), pro 96.9 0.0079 2.7E-07 45.2 9.9 57 217-273 26-82 (87)
17 1n7s_D SNAP-25A; neuronal snar 96.9 0.0084 2.9E-07 42.5 9.4 55 219-273 9-63 (66)
18 1ez3_A Syntaxin-1A; three heli 96.9 0.011 3.9E-07 46.8 11.1 82 47-128 6-124 (127)
19 1gl2_D Syntaxin 8, vesicle tra 96.8 0.006 2E-07 43.2 7.6 54 220-273 9-62 (65)
20 1l4a_D S-SNAP25 fusion protein 96.4 0.015 5.3E-07 43.6 8.0 55 219-273 29-83 (87)
21 3b5n_D Protein transport prote 96.3 0.04 1.4E-06 38.9 9.3 54 219-272 9-62 (64)
22 1nhl_A Synaptosomal-associated 96.2 0.035 1.2E-06 37.9 8.4 45 228-272 8-52 (54)
23 1n7s_C SNAP-25A; neuronal snar 95.8 0.16 5.4E-06 37.3 11.1 56 217-272 20-75 (79)
24 1s94_A S-syntaxin; three helix 95.4 0.018 6.2E-07 48.7 5.4 90 46-135 36-162 (180)
25 3b5n_C Protein transport prote 94.2 0.54 1.8E-05 33.7 9.6 35 239-273 31-65 (70)
26 2dnx_A Syntaxin-12; snare, HAB 94.1 0.68 2.3E-05 37.0 11.3 89 47-135 8-120 (130)
27 2kog_A Vesicle-associated memb 93.9 0.0033 1.1E-07 50.2 -2.9 38 222-259 35-72 (119)
28 1l4a_C S-SNAP25 fusion protein 93.7 0.27 9.4E-06 36.4 7.4 53 219-271 26-78 (83)
29 1gl2_C VTI1B, vesicle transpor 91.6 1.6 5.5E-05 30.5 8.9 51 222-272 11-61 (65)
30 1jth_B Syntaxin 1A; coiled-coi 91.4 2.1 7.1E-05 30.8 9.6 73 208-284 5-77 (77)
31 2nps_C Vesicle transport throu 89.3 4.9 0.00017 29.3 10.9 68 214-281 13-80 (81)
32 3hd7_A Vesicle-associated memb 78.6 18 0.00061 26.8 11.7 19 214-232 27-45 (91)
33 1sfc_A VAMP 2, protein (synapt 75.3 18 0.0006 27.2 8.4 42 221-262 31-72 (96)
34 4gwp_A Mediator of RNA polymer 62.5 29 0.001 26.9 7.2 64 213-276 4-71 (115)
35 3r84_A Mediator of RNA polymer 59.5 50 0.0017 24.3 8.6 63 214-276 2-68 (86)
36 3b5n_A Synaptobrevin homolog 1 59.4 38 0.0013 22.9 8.1 41 221-261 3-43 (61)
37 1sfc_B Protein (syntaxin 1A), 59.0 47 0.0016 23.8 9.9 66 204-269 12-77 (83)
38 2dnx_A Syntaxin-12; snare, HAB 58.7 63 0.0022 25.2 9.8 42 91-132 83-124 (130)
39 3efg_A Protein SLYX homolog; x 56.8 38 0.0013 24.4 6.6 47 221-267 15-61 (78)
40 2nps_A VAMP-4, vesicle-associa 53.7 33 0.0011 24.2 5.8 40 222-261 10-49 (74)
41 1p68_A De novo designed protei 52.2 45 0.0015 24.0 6.2 55 67-121 7-70 (102)
42 2nps_B Syntaxin 13, vesicle-as 50.7 59 0.002 22.5 10.2 58 212-269 5-62 (71)
43 3b5n_B Protein SSO1; snare com 48.6 64 0.0022 22.2 10.2 59 211-269 8-66 (69)
44 1gl2_B Syntaxin 7; membrane pr 46.8 66 0.0023 21.9 8.7 57 212-268 8-64 (65)
45 3p8c_F ABL interactor 2; actin 43.9 1.3E+02 0.0045 24.6 9.2 50 216-265 50-99 (159)
46 1urq_A M-tomosyn isoform; tran 39.4 90 0.0031 21.4 7.4 39 222-260 6-44 (63)
47 1n7s_B Syntaxin 1A; neuronal s 38.9 92 0.0031 21.3 9.9 57 211-267 10-66 (68)
48 1l4a_A Synaptobrevin; snare, s 36.0 88 0.003 22.3 5.8 38 222-259 17-54 (80)
49 1ykh_B RNA polymerase II holoe 35.2 1.6E+02 0.0055 23.0 8.5 27 46-72 50-76 (132)
50 3zx6_A HAMP, methyl-accepting 34.7 2.5E+02 0.0087 25.2 11.1 52 213-264 220-271 (341)
51 1qu7_A Methyl-accepting chemot 34.3 1.9E+02 0.0066 24.5 8.9 52 214-265 141-192 (227)
52 3htk_A Structural maintenance 30.7 1.2E+02 0.004 20.0 9.1 52 220-271 5-56 (60)
53 3arc_I Photosystem II reaction 30.5 52 0.0018 20.3 3.1 16 285-300 3-20 (38)
54 3okq_A BUD site selection prot 30.4 2.1E+02 0.0072 22.9 9.4 66 53-126 54-134 (141)
55 1n7s_A Vesicle-associated memb 26.7 1.5E+02 0.005 19.9 9.9 43 220-262 4-46 (63)
56 2ch7_A Methyl-accepting chemot 25.5 3.2E+02 0.011 23.5 9.8 40 220-259 219-258 (309)
57 1jcd_A Major outer membrane li 23.9 1.6E+02 0.0055 19.4 7.1 30 248-277 18-47 (52)
58 2ww9_B Protein transport prote 22.1 42 0.0014 24.4 1.9 27 248-274 13-39 (80)
59 1dn1_B Syntaxin 1A, syntaxin b 21.0 14 0.00049 32.7 -1.0 57 212-268 199-255 (267)
60 1zxa_A CGMP-dependent protein 20.3 2E+02 0.0069 20.0 5.0 17 213-229 18-34 (67)
No 1
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=99.92 E-value=4.9e-26 Score=209.85 Aligned_cols=196 Identities=18% Similarity=0.241 Sum_probs=121.7
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHhhhh-
Q 021981 45 ASSRSEFNKKASRIGLGIHEASQKIARLAKY-------------------------------------LQTLQNLEIVE- 86 (304)
Q Consensus 45 ~~~~seF~~~A~~I~~~i~~~~~kL~kL~~L-------------------------------------Lq~l~~~~~~~- 86 (304)
....++|...++.|+.+|.++..++.+|..| |+.|.......
T Consensus 40 ~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~ 119 (279)
T 2xhe_B 40 EPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQ 119 (279)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4467899999999999999999999999888 22222211110
Q ss_pred C-----CCchh-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCccccCCCCCCCCCCCC
Q 021981 87 G-----NYSQD-RVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWS 160 (304)
Q Consensus 87 ~-----~~~~q-~~~h~~~Vv~~L~~~L~~~s~~Fk~vl~~r~~~~k~~~eRr~~f~~~~~~~~~~~~~~~~~~~~~~~~ 160 (304)
. ..+.. ...|+.+++..|..+|++++..|+.++..|.+.+|.+..|. |...+ | .+..
T Consensus 120 ~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~--~~i~~----~-----------~~~~ 182 (279)
T 2xhe_B 120 QEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQ--CRVVE----P-----------SLSD 182 (279)
T ss_dssp HHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS--CCSSC----C-----------CCSS
T ss_pred hcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhC----C-----------CCCH
Confidence 0 01122 45899999999999999999999999999999998776553 21111 0 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 161 SPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLA 240 (304)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ql~e~~~~~l~~R~~~i~~ie~~i~eL~~if~~la 240 (304)
. .+ ..+...+ .+. ..++.+.+..+....++++|+++|.+||++|.||++||.+|+
T Consensus 183 e-----------e~--------~~~~e~g----~~~--~f~q~~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla 237 (279)
T 2xhe_B 183 D-----------AI--------QKVIEHG----TEG--IFSGMRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMS 237 (279)
T ss_dssp T-----------TH--------HHHHHHC-----------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-----------HH--------HHHHhCC----chH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 0000000 000 001112222334567899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 021981 241 TMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNR 282 (304)
Q Consensus 241 ~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r 282 (304)
+||.+||++||+||+||+.|..||+.|+.+|.||.++++++|
T Consensus 238 ~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk~~R 279 (279)
T 2xhe_B 238 TLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQESAR 279 (279)
T ss_dssp TTTTTSCSSTTCHHHHHHTCCCCC------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 999999999999999999999999999999999999988765
No 2
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.90 E-value=2.2e-23 Score=166.36 Aligned_cols=74 Identities=26% Similarity=0.360 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch
Q 021981 210 RQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRW 283 (304)
Q Consensus 210 ~~~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r~ 283 (304)
+..+++++|++++++||++|.||++||+||++||.+||++||+||+||++|..||+.|+.+|.||.++++++|+
T Consensus 11 ~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rk 84 (109)
T 3hd7_B 11 QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 84 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34689999999999999999999999999999999999999999999999999999999999999776555443
No 3
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=99.87 E-value=2.9e-22 Score=183.63 Aligned_cols=203 Identities=17% Similarity=0.182 Sum_probs=132.0
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHhhh--hC
Q 021981 45 ASSRSEFNKKASRIGLGIHEASQKIARLAKY-----------------------------------LQTLQNLEIV--EG 87 (304)
Q Consensus 45 ~~~~seF~~~A~~I~~~i~~~~~kL~kL~~L-----------------------------------Lq~l~~~~~~--~~ 87 (304)
.....+|...+..|..+|.++...+.+|..+ |+.|...... ..
T Consensus 27 ~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~ 106 (267)
T 1dn1_B 27 DRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGL 106 (267)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3458899999999999999999999998888 3333322111 11
Q ss_pred CCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCccccCCCCCCCCCCCCCCCCCCC
Q 021981 88 NYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASE 167 (304)
Q Consensus 88 ~~~~q~~~h~~~Vv~~L~~~L~~~s~~Fk~vl~~r~~~~k~~~eRr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (304)
..+........+++..|..+|.+++..|+.++..|.+.+|.+..|...+........- +. .
T Consensus 107 ~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~~tdee-ie--------~---------- 167 (267)
T 1dn1_B 107 NRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEE-LE--------D---------- 167 (267)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHH-HH--------H----------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCCCHHH-HH--------H----------
Confidence 2233444678899999999999999999999999999999988886554322110000 00 0
Q ss_pred CCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 168 SSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQG 247 (304)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ql~e~~~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qg 247 (304)
++ ..++ ...+..+-+ . +.........++++|+++|.+||++|.||++||.|||+||.+||
T Consensus 168 ~i-----e~g~----~~~f~q~~l---~--------~~~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg 227 (267)
T 1dn1_B 168 ML-----ESGN----PAIFASGII---M--------DSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQG 227 (267)
T ss_dssp HH-----HTCS----SCTTTTTCC---C--------CSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHC
T ss_pred HH-----hCCc----HHHHHHHHH---H--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 0000 000000000 0 00112234679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHH
Q 021981 248 ELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMI 286 (304)
Q Consensus 248 e~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r~~~~ 286 (304)
++||+||+||+.|..||+.|+.+|.||.+++++.|++.|
T Consensus 228 ~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~~ 266 (267)
T 1dn1_B 228 EMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 266 (267)
T ss_dssp SGGGCHHHHHHTCCCCCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 999999999999999999999999999998877766544
No 4
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.86 E-value=8.6e-22 Score=147.66 Aligned_cols=74 Identities=27% Similarity=0.369 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHH
Q 021981 213 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMI 286 (304)
Q Consensus 213 ~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r~~~~ 286 (304)
.++++|+++|.+||++|.||++||.||++||.+||++||+||+||+.|..||+.|+.+|.||.++++++|+++|
T Consensus 3 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~ 76 (77)
T 1jth_B 3 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 58899999999999999999999999999999999999999999999999999999999999998888877654
No 5
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.84 E-value=9.2e-21 Score=139.87 Aligned_cols=69 Identities=30% Similarity=0.415 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchh
Q 021981 216 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWL 284 (304)
Q Consensus 216 ~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r~~ 284 (304)
++|+++|.+||++|.||++||.||++||.+||++||+||+||+.|..||+.|..+|.||.++++++|+|
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~ 70 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKK 70 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 479999999999999999999999999999999999999999999999999999999999998888765
No 6
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.82 E-value=5.8e-20 Score=139.60 Aligned_cols=73 Identities=26% Similarity=0.372 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 021981 210 RQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNR 282 (304)
Q Consensus 210 ~~~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r 282 (304)
....++++|+++|.+||++|.||++||.||++||.+||++||+||+||+.|..||+.|+.+|.||.++++++|
T Consensus 11 ~~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 83 (83)
T 1sfc_B 11 QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 3467899999999999999999999999999999999999999999999999999999999999999988765
No 7
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.82 E-value=1.1e-19 Score=133.40 Aligned_cols=67 Identities=22% Similarity=0.304 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021981 213 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQIS 279 (304)
Q Consensus 213 ~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~ 279 (304)
.++++|+++|.+||++|.||++||.||++||.+||++||+||+||+.|..||+.|+.+|.||.++++
T Consensus 3 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 3 AEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999999999998764
No 8
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.78 E-value=7.5e-19 Score=128.51 Aligned_cols=64 Identities=27% Similarity=0.397 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 212 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHL 275 (304)
Q Consensus 212 ~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~ 275 (304)
..++++|+++|.+||++|.||++||.||++||.+||++||+||+||+.|..||+.|+.+|.||.
T Consensus 4 l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 4 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999999999999999999999999999985
No 9
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.78 E-value=3.7e-19 Score=128.98 Aligned_cols=64 Identities=25% Similarity=0.445 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 213 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLN 276 (304)
Q Consensus 213 ~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~ 276 (304)
.++++|+++|++||++|.||++||.||++||.+||++||+||+||+.|..||+.|+.+|.||.+
T Consensus 2 ~~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 2 SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4788999999999999999999999999999999999999999999999999999999999853
No 10
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.72 E-value=7.6e-18 Score=152.58 Aligned_cols=228 Identities=17% Similarity=0.187 Sum_probs=139.4
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 021981 4 PYRDRTAEFRSLSQTLKKIGGATTAVDQPNNSFVSPKPPNPASSRSEFNKKASRIGLGIHEASQKIARLAKY-------- 75 (304)
Q Consensus 4 ~~~DRT~eF~s~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~seF~~~A~~I~~~i~~~~~kL~kL~~L-------- 75 (304)
+.+|||.||+++.++........ .........+|...+..|...|..+...+.+|..+
T Consensus 12 ~mkDr~~el~~~~~~~~~~~~~~--------------~~~~~~~m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~ 77 (279)
T 3c98_B 12 SMKDRTQELRTAKDSDDDDDVTV--------------TVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASP 77 (279)
T ss_dssp --CCCCTTTC-------------------------------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred chHHHHHHHHHhhhcccccchhh--------------hcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 57999999999887765432111 11123457899999999999999999999998887
Q ss_pred ------------------------------HHHHHHHhhhhCCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 76 ------------------------------LQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTEN 125 (304)
Q Consensus 76 ------------------------------Lq~l~~~~~~~~~~~~q~~~h~~~Vv~~L~~~L~~~s~~Fk~vl~~r~~~ 125 (304)
|+.+.+... ..........+..+.+..|...++.+...|.+....+...
T Consensus 78 ~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~-~i~~~~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~v 156 (279)
T 3c98_B 78 NPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEE-GLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRER 156 (279)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 1123456778889999999999999999999999999988
Q ss_pred HHHHHhhhhhhcccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHHh
Q 021981 126 IKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQ 205 (304)
Q Consensus 126 ~k~~~eRr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 205 (304)
++....|...++............ .. ... . ... ... .....
T Consensus 157 va~evr~la~~~~~~~~~~~~~~~------~~-~~~----~----------------~~~-----~~~-------~~~~~ 197 (279)
T 3c98_B 157 CKGRIQRQLEITGRTTTSEELEDM------LE-SGN----P----------------AIF-----ASG-------IIMDS 197 (279)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHH------HH-SCC----T----------------TSS-----TTT-------SCSCS
T ss_pred HHHHHHHHHHhhccCccchHHHHH------HH-hhh----h----------------HHH-----HHH-------HHHHH
Confidence 888776665554322110000000 00 000 0 000 000 00111
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhH
Q 021981 206 QVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLM 285 (304)
Q Consensus 206 ql~e~~~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r~~~ 285 (304)
+...+...++++|++++.+|+..|.+|+++|.+|+.+|.+|++++++|++||+.+..+|+.|..+|.+|.+++++.|++.
T Consensus 198 ~~~~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkkk 277 (279)
T 3c98_B 198 SISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKK 277 (279)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 22344567899999999999999999999999999999999999999999999999999999999999999877665543
No 11
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.47 E-value=2.3e-13 Score=118.40 Aligned_cols=159 Identities=14% Similarity=0.185 Sum_probs=105.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHhh-------hhC---CCchhHHHHHH
Q 021981 48 RSEFNKKASRIGLGIHEASQKIARLAKY-------------------LQTLQNLEI-------VEG---NYSQDRVVHST 98 (304)
Q Consensus 48 ~seF~~~A~~I~~~i~~~~~kL~kL~~L-------------------Lq~l~~~~~-------~~~---~~~~q~~~h~~ 98 (304)
..+|...+..|..+|.++..++.+|..+ |+.+..... ... ........+..
T Consensus 4 ~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~~~r~~k 83 (196)
T 1fio_A 4 FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQ 83 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHH
Confidence 4579999999999999999999998888 111111111 000 00011246788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021981 99 TVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGG 178 (304)
Q Consensus 99 ~Vv~~L~~~L~~~s~~Fk~vl~~r~~~~k~~~eRr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (304)
+++..|..+|++++..|+.++..|.+.+|.+.+|........... .
T Consensus 84 ~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i~~~~~~~-~--------------------------------- 129 (196)
T 1fio_A 84 AQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATE-D--------------------------------- 129 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCH-H---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-H---------------------------------
Confidence 999999999999999999999999999999998875432211000 0
Q ss_pred CccCcccccCCcCCCCCchhhhhhHH-----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 179 VQVGNQLRRRPAVDNAPSHHMEMSML-----QQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQG 247 (304)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~q-----~ql~e~~~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qg 247 (304)
+. ..+ ++.....+..++.. .+.......++++|+++|.+||++|.||++||.|||+||++||
T Consensus 130 -e~-~~~-----~~~~~~~~~f~~~~~~~~~~~~~~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 130 -EV-EAA-----ISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp -HH-HHH-----TSHHHHHHHHHHHTC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred -HH-HHH-----HHcCCchhHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00 000 00000000001000 1112335689999999999999999999999999999999997
No 12
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.99 E-value=0.00015 Score=57.07 Aligned_cols=88 Identities=5% Similarity=0.077 Sum_probs=74.0
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 021981 203 MLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNR 282 (304)
Q Consensus 203 ~q~ql~e~~~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r 282 (304)
+.+..+++...++.+-+..|.+|..-..+|+.|..+=+.+|..=+..++....||+.+...+..|. +|.++.++++
T Consensus 11 ~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~----~yqk~~rkk~ 86 (109)
T 3hd7_B 11 QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV----KYQSKARRKK 86 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhccCcc
Confidence 345556677788999999999999999999999999999999999999999999999999999997 4566666677
Q ss_pred hhHHHHHHHHHH
Q 021981 283 WLMIKIFAVIIF 294 (304)
Q Consensus 283 ~~~~~i~~iliv 294 (304)
|||++|++++++
T Consensus 87 ~i~l~~~~i~~~ 98 (109)
T 3hd7_B 87 IMIIICCVILGI 98 (109)
T ss_dssp HHHHHHHHHHHH
T ss_pred eehHHHHHHHHH
Confidence 877766655433
No 13
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=97.71 E-value=0.00018 Score=53.69 Aligned_cols=72 Identities=11% Similarity=0.131 Sum_probs=56.9
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 021981 203 MLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSN 281 (304)
Q Consensus 203 ~q~ql~e~~~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~ 281 (304)
.|.+++++++. .+..|..+|..|..|-.+|+.-|.+|.++||.|+..++.+...+..++..+.+..++.+.+
T Consensus 9 ~Q~~~~~eQD~-------~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~ 80 (82)
T 2nps_D 9 GGNNMGRMQDE-------QLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDR 80 (82)
T ss_dssp ---------CC-------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Confidence 34455555443 5788999999999999999999999999999999999999999999999998887765544
No 14
>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae}
Probab=97.45 E-value=2.3e-05 Score=52.69 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=19.7
Q ss_pred CCCCCchHHHHHHHHHHHhhcCC
Q 021981 3 SPYRDRTAEFRSLSQTLKKIGGA 25 (304)
Q Consensus 3 ~~~~DRT~eF~s~v~s~~~~~~~ 25 (304)
++|+|||+||+++|+++++|.+.
T Consensus 6 ~SiqDRT~EF~siv~~lqkr~~~ 28 (50)
T 1mqs_B 6 MNIKDRTSEFQQSVLSYKKRNKN 28 (50)
T ss_dssp HHHHBCHHHHHHHHHHHHHHC--
T ss_pred ccccccCHHHHHHHHHHHhcccc
Confidence 57899999999999999998854
No 15
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.22 E-value=0.0055 Score=46.49 Aligned_cols=44 Identities=18% Similarity=0.219 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 220 VALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLAN 263 (304)
Q Consensus 220 ~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~n 263 (304)
+.+.++...+.|+..++.+=-..|.+.||-||.+++..++-...
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~ 48 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAG 48 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 35788888899999999888889999999999998877654443
No 16
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.93 E-value=0.0079 Score=45.18 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 217 SRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLR 273 (304)
Q Consensus 217 ~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~k 273 (304)
+-.+.+..|...|..|..|-.+|+.-|..|.++||+|+..++.+...+..+++.+.+
T Consensus 26 eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ 82 (87)
T 1sfc_D 26 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334568899999999999999999999999999999999999999999999887755
No 17
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=96.90 E-value=0.0084 Score=42.53 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 219 AVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLR 273 (304)
Q Consensus 219 ~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~k 273 (304)
.+.+..|...|..|..|-.+++.-|..|.++||+|+..++.+...+..+++.+.+
T Consensus 9 D~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 9 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999999999999999999999999999999999887754
No 18
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=96.88 E-value=0.011 Score=46.84 Aligned_cols=82 Identities=16% Similarity=0.131 Sum_probs=62.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHhhh--hCCC
Q 021981 47 SRSEFNKKASRIGLGIHEASQKIARLAKY-----------------------------------LQTLQNLEIV--EGNY 89 (304)
Q Consensus 47 ~~seF~~~A~~I~~~i~~~~~kL~kL~~L-----------------------------------Lq~l~~~~~~--~~~~ 89 (304)
...+|...+..|..+|..+...+.+|..+ |+.+...... ....
T Consensus 6 ~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~ 85 (127)
T 1ez3_A 6 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNR 85 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 35679999999999999999999998887 4444433221 1122
Q ss_pred chhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 90 SQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKA 128 (304)
Q Consensus 90 ~~q~~~h~~~Vv~~L~~~L~~~s~~Fk~vl~~r~~~~k~ 128 (304)
+.....-+.+++..|..+|.+++..|+.+...|-+.+|.
T Consensus 86 ~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~ 124 (127)
T 1ez3_A 86 SSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKG 124 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557789999999999999999999999988877654
No 19
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.75 E-value=0.006 Score=43.19 Aligned_cols=54 Identities=9% Similarity=0.135 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 220 VALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLR 273 (304)
Q Consensus 220 ~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~k 273 (304)
+.+..|...|..|.+|-.+++.-|..|.++||+|+..++.+...+..++..+.+
T Consensus 9 ~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 9 AGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368889999999999999999999999999999999999999999999876644
No 20
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=96.36 E-value=0.015 Score=43.63 Aligned_cols=55 Identities=15% Similarity=0.240 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 219 AVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLR 273 (304)
Q Consensus 219 ~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~k 273 (304)
.+.+..|...+..|..|-.+++.-|..|.++||+|+..++.+...|..+++.+.+
T Consensus 29 D~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 29 ENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468899999999999999999999999999999999999999999999887765
No 21
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.04 Score=38.91 Aligned_cols=54 Identities=15% Similarity=0.133 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 219 AVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALL 272 (304)
Q Consensus 219 ~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ 272 (304)
.+.+.+|...+..|..|-..++.-|..|-++||+|+..++.+...|..+++-|.
T Consensus 9 D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~ 62 (64)
T 3b5n_D 9 DRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLA 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345888999999999999999999999999999999999999999999987764
No 22
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=96.21 E-value=0.035 Score=37.85 Aligned_cols=45 Identities=20% Similarity=0.198 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 228 TITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALL 272 (304)
Q Consensus 228 ~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ 272 (304)
-+.|-.++-..-..++.+|||.|+||+.+++++..++..|.+.|.
T Consensus 8 l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 8 LAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 344445555567778899999999999999999999999998774
No 23
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=95.84 E-value=0.16 Score=37.34 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 217 SRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALL 272 (304)
Q Consensus 217 ~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ 272 (304)
+=.+.+++.-+.+.|-.++-.....+++.|||.|++|+.+++++..++..|.+.|.
T Consensus 20 ~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~ 75 (79)
T 1n7s_C 20 ESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLK 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 33455666677777777777888899999999999999999999999999998774
No 24
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=95.44 E-value=0.018 Score=48.70 Aligned_cols=90 Identities=18% Similarity=0.149 Sum_probs=63.7
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHhhhh--CC
Q 021981 46 SSRSEFNKKASRIGLGIHEASQKIARLAKY-----------------------------------LQTLQNLEIVE--GN 88 (304)
Q Consensus 46 ~~~seF~~~A~~I~~~i~~~~~kL~kL~~L-----------------------------------Lq~l~~~~~~~--~~ 88 (304)
....+|...+..|..+|..+...+.+|..+ |+.|.+..... ..
T Consensus 36 ~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~ 115 (180)
T 1s94_A 36 GFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSN 115 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 346689999999999999999999998888 33333322111 01
Q ss_pred CchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021981 89 YSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQI 135 (304)
Q Consensus 89 ~~~q~~~h~~~Vv~~L~~~L~~~s~~Fk~vl~~r~~~~k~~~eRr~~ 135 (304)
.+.....-..+++..|..+|.+++..|+.++..|.+.+|.+-.|...
T Consensus 116 ~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~Rq~~ 162 (180)
T 1s94_A 116 KSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIKRQME 162 (180)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334466788999999999999999999999999888888766433
No 25
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=94.20 E-value=0.54 Score=33.68 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 239 LATMVAQQGELAIRIDDNMDESLANVEGARNALLR 273 (304)
Q Consensus 239 la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~k 273 (304)
=..++.+|||.|+|||.|++.+..+...|.+.|..
T Consensus 31 Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~ 65 (70)
T 3b5n_C 31 TLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467789999999999999999999999988754
No 26
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.11 E-value=0.68 Score=36.99 Aligned_cols=89 Identities=8% Similarity=0.004 Sum_probs=55.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHhhhh-CCCchhHHHHHHh-------HHH
Q 021981 47 SRSEFNKKASRIGLGIHEASQKIARLAKYLQTLQ----------------NLEIVE-GNYSQDRVVHSTT-------VCD 102 (304)
Q Consensus 47 ~~seF~~~A~~I~~~i~~~~~kL~kL~~LLq~l~----------------~~~~~~-~~~~~q~~~h~~~-------Vv~ 102 (304)
...+|..++..|+..|.++...+..|..++..|. ...+.. +.-+..+++.... .=.
T Consensus 8 d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r 87 (130)
T 2dnx_A 8 QLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQR 87 (130)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHH
Confidence 4568999999999999999999888888733322 111110 0001111111110 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021981 103 DLKSKLMGATKELQDVLTTRTENIKAHESRKQI 135 (304)
Q Consensus 103 ~L~~~L~~~s~~Fk~vl~~r~~~~k~~~eRr~~ 135 (304)
..+....+++++|++++..+..-.+.-.+|.+.
T Consensus 88 ~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~ 120 (130)
T 2dnx_A 88 QQRLQKERLMNDFSAALNNFQAVQRRVSEKEKE 120 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 234457788999999999999888877777653
No 27
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=93.89 E-value=0.0033 Score=50.17 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 222 LHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDE 259 (304)
Q Consensus 222 i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~ 259 (304)
+.++...+.|+..++.+=-..|.+.||-||.+++..++
T Consensus 35 l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~ 72 (119)
T 2kog_A 35 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 72 (119)
T ss_dssp HHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 56666777777777777777888999999988877654
No 28
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=93.66 E-value=0.27 Score=36.42 Aligned_cols=53 Identities=19% Similarity=0.200 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 219 AVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNAL 271 (304)
Q Consensus 219 ~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL 271 (304)
.+..++.-+-+.|..+.-..=..++..|||.|+||+.+++....+...|.+.|
T Consensus 26 l~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L 78 (83)
T 1l4a_C 26 LESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNL 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555665556566677888999999999999999999888776544
No 29
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=91.64 E-value=1.6 Score=30.52 Aligned_cols=51 Identities=18% Similarity=0.177 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 222 LHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALL 272 (304)
Q Consensus 222 i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ 272 (304)
+..-.+.+.|--+|-......+..|+|.|.+....+.++..|+..+.+-|.
T Consensus 11 l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~ 61 (65)
T 1gl2_C 11 IERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILR 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHH
Confidence 444445556666666677788899999999999999999999999987664
No 30
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=91.43 E-value=2.1 Score=30.83 Aligned_cols=73 Identities=4% Similarity=0.085 Sum_probs=55.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchh
Q 021981 208 VPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWL 284 (304)
Q Consensus 208 ~e~~~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~r~~ 284 (304)
+++-...+..-...|.+|..-..+|+.|..+=+.+|..=+..|+....||+.+...+..|.. |.++.++++||
T Consensus 5 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~----~q~~~rkk~~i 77 (77)
T 1jth_B 5 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK----YQSKARRKKIM 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----C----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhcCcccC
Confidence 34446678888889999999999999999999999999999999999999999999999974 55666666665
No 31
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=89.33 E-value=4.9 Score=29.28 Aligned_cols=68 Identities=18% Similarity=0.118 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 021981 214 YSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSN 281 (304)
Q Consensus 214 ~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~~~~~~ 281 (304)
.+..=.+.+..-...+.|=-+|-..+..-+..|.|.|.+....+.++..++..+.+-|..-.++.-.|
T Consensus 13 ~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~n 80 (81)
T 2nps_C 13 RLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQN 80 (81)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhC
Confidence 33333445666666677777777788888899999999999999999999999998887665554433
No 32
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=78.56 E-value=18 Score=26.78 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021981 214 YSQSRAVALHNVESTITEL 232 (304)
Q Consensus 214 ~l~~R~~~i~~ie~~i~eL 232 (304)
.+-+|.+.+..++..-.+|
T Consensus 27 kvL~RgekL~~L~~kt~~L 45 (91)
T 3hd7_A 27 KVLERDQKLSELDDRADAL 45 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHH
Confidence 3344444444444333333
No 33
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=75.31 E-value=18 Score=27.16 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 221 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLA 262 (304)
Q Consensus 221 ~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~ 262 (304)
.+.+|...|.|+..|+.+=-..|.+-||-||.+++..++-..
T Consensus 31 ~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~ 72 (96)
T 1sfc_A 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 477888888888888888888999999999998877665433
No 34
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=62.50 E-value=29 Score=26.91 Aligned_cols=64 Identities=11% Similarity=0.266 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 213 NYSQSRAVALHNVESTIT----ELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLN 276 (304)
Q Consensus 213 ~~l~~R~~~i~~ie~~i~----eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~ 276 (304)
.|+++|.+.+..|...|. +++++|.-++.+=.-....=..++.|+.+--...+.+...|+|-++
T Consensus 4 ~~VqERLdSL~~ID~kl~slL~~~S~~~~t~~elK~g~~~~K~qF~~~~~~fY~~Ls~~a~~LRkEIK 71 (115)
T 4gwp_A 4 PYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQ 71 (115)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999988877654 4566666666544444445566888888888888888888888655
No 35
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=59.46 E-value=50 Score=24.29 Aligned_cols=63 Identities=10% Similarity=0.278 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 214 YSQSRAVALHNVESTITEL----GGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLN 276 (304)
Q Consensus 214 ~l~~R~~~i~~ie~~i~eL----~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL~ka~~ 276 (304)
|+++|.+++..|...|..| +.+|.-++..-.-=..+-...+.++.+--...+.....|+|=++
T Consensus 2 ~iqERL~sL~~ID~~i~sLL~~as~~i~tls~~k~~~~~~K~~F~~~t~~fy~tL~~v~v~LrkEIk 68 (86)
T 3r84_A 2 YIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQ 68 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999998887655 44445454433211234455666777777777777777766443
No 36
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=59.42 E-value=38 Score=22.89 Aligned_cols=41 Identities=24% Similarity=0.337 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 221 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESL 261 (304)
Q Consensus 221 ~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~ 261 (304)
.+..|...+.|+..|+.+=-.-|.+.||-|+.+.+..++-.
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~ 43 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLA 43 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 46788888999999998888889999999999887766533
No 37
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=59.00 E-value=47 Score=23.85 Aligned_cols=66 Identities=5% Similarity=0.062 Sum_probs=57.1
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 204 LQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARN 269 (304)
Q Consensus 204 q~ql~e~~~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~ 269 (304)
.+..+++-...+..-...|.+|..-..+|+.|..+=+.+|..=+.-|+....||+.+...+..|.+
T Consensus 12 ~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~ 77 (83)
T 1sfc_B 12 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667788888899999999999999999999999999999999999999999999988875
No 38
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.73 E-value=63 Score=25.24 Aligned_cols=42 Identities=17% Similarity=0.132 Sum_probs=34.6
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021981 91 QDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESR 132 (304)
Q Consensus 91 ~q~~~h~~~Vv~~L~~~L~~~s~~Fk~vl~~r~~~~k~~~eR 132 (304)
.+...+......=|..-+..+-..|+.++....+..|..-.+
T Consensus 83 ~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~~~~ 124 (130)
T 2dnx_A 83 TSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKESIAR 124 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 445567777888888889999999999999999988876543
No 39
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=56.81 E-value=38 Score=24.36 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 221 ALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 267 (304)
Q Consensus 221 ~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g 267 (304)
.|..||..+.-.-....+|+..|.+|...||++...+..-...+...
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777888888888888888899999999999998887766665543
No 40
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=53.72 E-value=33 Score=24.20 Aligned_cols=40 Identities=18% Similarity=0.275 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 222 LHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESL 261 (304)
Q Consensus 222 i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~ 261 (304)
+..|...+.|+..|+.+=-.-|.+-||-|+.+.+-.++-.
T Consensus 10 l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~ 49 (74)
T 2nps_A 10 IKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLS 49 (74)
T ss_dssp SHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455555666666666666677888998888877665533
No 41
>1p68_A De novo designed protein S-824; four helix bundle, de novo protein; NMR {Escherichia coli} SCOP: k.8.1.1 PDB: 2jua_A
Probab=52.19 E-value=45 Score=23.98 Aligned_cols=55 Identities=25% Similarity=0.254 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHhHHHHHH---------HHHHHHHHHHHHHHHH
Q 021981 67 QKIARLAKYLQTLQNLEIVEGNYSQDRVVHSTTVCDDLK---------SKLMGATKELQDVLTT 121 (304)
Q Consensus 67 ~kL~kL~~LLq~l~~~~~~~~~~~~q~~~h~~~Vv~~L~---------~~L~~~s~~Fk~vl~~ 121 (304)
..|+.|...|..|.+.-...+..--.+..|-.||+.-+- .+|++++++|+.++..
T Consensus 7 dlledlqevlknlhknwhggkdnlhdvdnhlqnviedihdfmqgggsggklqemmkefqqvlde 70 (102)
T 1p68_A 7 DLLEDLQEVLKNLHKNWHGGKDNLHDVDNHLQNVIEDIHDFMQGGGSGGKLQEMMKEFQQVLDE 70 (102)
T ss_dssp HHHHHHHHHHHHHHTTSSSCSTTTHHHHHHHHHHHHHHHTTTTTSSTTTHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCccchhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 334444444555543322211112367888889988775 5899999999998864
No 42
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=50.68 E-value=59 Score=22.51 Aligned_cols=58 Identities=9% Similarity=0.108 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 212 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARN 269 (304)
Q Consensus 212 ~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~ 269 (304)
...|..-...|.+|..-..+|+.|..+=+.+|..=+.-|+....||+.+...+..|..
T Consensus 5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~ 62 (71)
T 2nps_B 5 ETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAY 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777788999999999999999999999999999999999999999999999985
No 43
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=48.60 E-value=64 Score=22.24 Aligned_cols=59 Identities=3% Similarity=0.043 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 211 QENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARN 269 (304)
Q Consensus 211 ~~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~ 269 (304)
-...+.+-...|..|..-..+|+.|..+=+.+|..=+..|+....||+.+...+..|.+
T Consensus 8 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 8 RHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777777777777777777777777777777777777777777766653
No 44
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=46.82 E-value=66 Score=21.91 Aligned_cols=57 Identities=7% Similarity=0.135 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 212 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGAR 268 (304)
Q Consensus 212 ~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~ 268 (304)
...+..-...|..|..-..+|+.|..+=+.+|..=+.-|+....||+.+...+..|.
T Consensus 8 ~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 8 ESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445566666777777777777777777777777777777777777777777776654
No 45
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=43.92 E-value=1.3e+02 Score=24.57 Aligned_cols=50 Identities=12% Similarity=0.222 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 216 QSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVE 265 (304)
Q Consensus 216 ~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~ 265 (304)
+.+....+.|-+....|+.+-..|-.|+..|.+.|.++|..|.-...-|.
T Consensus 50 eTK~Ya~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v~ 99 (159)
T 3p8c_F 50 ETKAYTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVD 99 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566789999999999999999999999999999999999986655543
No 46
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=39.39 E-value=90 Score=21.35 Aligned_cols=39 Identities=8% Similarity=0.213 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 222 LHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDES 260 (304)
Q Consensus 222 i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a 260 (304)
+..+...+.|+.+++.+=-..|.+-||-|+.|++-+++-
T Consensus 6 i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L 44 (63)
T 1urq_A 6 IEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAM 44 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888899999999999998877663
No 47
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=38.90 E-value=92 Score=21.30 Aligned_cols=57 Identities=5% Similarity=0.091 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 211 QENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 267 (304)
Q Consensus 211 ~~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g 267 (304)
-...+..-...|..|..-..+|+.|..+=+.+|..=+..++....||+.+...+..|
T Consensus 10 R~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 10 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666666666666666666666666666555
No 48
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=35.98 E-value=88 Score=22.26 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 222 LHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDE 259 (304)
Q Consensus 222 i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~ 259 (304)
+..|...+.|+..|+.+=-..|.+-||-|+.+++-.++
T Consensus 17 l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~ 54 (80)
T 1l4a_A 17 LQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADA 54 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 66677777788888887778889999999998877664
No 49
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=35.21 E-value=1.6e+02 Score=23.05 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=20.7
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHH
Q 021981 46 SSRSEFNKKASRIGLGIHEASQKIARL 72 (304)
Q Consensus 46 ~~~seF~~~A~~I~~~i~~~~~kL~kL 72 (304)
.+..+|.....+.+.+|-.....+..|
T Consensus 50 ~~~~~f~~~~~ela~dli~k~kqIe~L 76 (132)
T 1ykh_B 50 VPPEEFSNTIDELSTDIILKTRQINKL 76 (132)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999998888888777543
No 50
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=34.67 E-value=2.5e+02 Score=25.15 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 213 NYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANV 264 (304)
Q Consensus 213 ~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv 264 (304)
..+.+-.+.+.+|...+.++...+.+++..+.+|...++.|..++.+...-+
T Consensus 220 ~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~ 271 (341)
T 3zx6_A 220 TLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVT 271 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556678888888999999999999999999998888887776654433
No 51
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=34.30 E-value=1.9e+02 Score=24.53 Aligned_cols=52 Identities=13% Similarity=0.129 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 214 YSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVE 265 (304)
Q Consensus 214 ~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~ 265 (304)
.+.+-.+.+..|...+.++...+.+++..+.+|...++.|..++.+...-++
T Consensus 141 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~ 192 (227)
T 1qu7_A 141 LVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQ 192 (227)
T ss_dssp HHHHHTTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455678888888899999999999999999999988888776554433
No 52
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=30.68 E-value=1.2e+02 Score=20.01 Aligned_cols=52 Identities=13% Similarity=0.066 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 220 VALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNAL 271 (304)
Q Consensus 220 ~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~~eL 271 (304)
+++.+++..+.++.+.+...-..+.+...-+++...++..+.++|..=..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888777777777777777777777777777777777655444
No 53
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=30.49 E-value=52 Score=20.30 Aligned_cols=16 Identities=38% Similarity=0.775 Sum_probs=7.1
Q ss_pred HHHHH--HHHHHHHHHHH
Q 021981 285 MIKIF--AVIIFFLTVFM 300 (304)
Q Consensus 285 ~~~i~--~iliv~~~~~~ 300 (304)
.++++ .+++.|+.+|+
T Consensus 3 tLKi~Vy~vV~ffvsLFi 20 (38)
T 3arc_I 3 TLKITVYIVVTFFVLLFV 20 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eEEeeehhHHHHHHHHHH
Confidence 44444 34444444444
No 54
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=30.35 E-value=2.1e+02 Score=22.88 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHhhhhCCCchhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 021981 53 KKASRIGLGIHEASQKIARLAKY---------------LQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQD 117 (304)
Q Consensus 53 ~~A~~I~~~i~~~~~kL~kL~~L---------------Lq~l~~~~~~~~~~~~q~~~h~~~Vv~~L~~~L~~~s~~Fk~ 117 (304)
+.-+.|.++|..+..-|.+|... |+.++.. .+--.|..-.+.-|+.-|.+++..|.-
T Consensus 54 ~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceE--------Qqfl~~QedL~~DL~eDL~ka~etf~l 125 (141)
T 3okq_A 54 KKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEE--------QQFLTLQEELILDLKEDLGKALETFDL 125 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999998888 4444422 456778889999999999999999988
Q ss_pred HHHHHHHHH
Q 021981 118 VLTTRTENI 126 (304)
Q Consensus 118 vl~~r~~~~ 126 (304)
+-+.-.+.+
T Consensus 126 Veq~~~eq~ 134 (141)
T 3okq_A 126 IKLCCEEQE 134 (141)
T ss_dssp HHHHC----
T ss_pred HHHHHHHHH
Confidence 876654433
No 55
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=26.67 E-value=1.5e+02 Score=19.90 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 220 VALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLA 262 (304)
Q Consensus 220 ~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~ 262 (304)
+.+..+...+.|+..|+.+=-..|.+.||-|+.+++..++-..
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~ 46 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4578888999999999999889999999999998877665443
No 56
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=25.48 E-value=3.2e+02 Score=23.47 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 220 VALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDE 259 (304)
Q Consensus 220 ~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~ 259 (304)
+.+..+...+.++...+.+++..+.++...++.|...+.+
T Consensus 219 ~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 258 (309)
T 2ch7_A 219 EKLNSIVGAVERINEMLQNIAAAIEEQTAAVDEITTAMTE 258 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666666666666666554433
No 57
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=23.93 E-value=1.6e+02 Score=19.40 Aligned_cols=30 Identities=10% Similarity=0.178 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 248 ELAIRIDDNMDESLANVEGARNALLRHLNQ 277 (304)
Q Consensus 248 e~id~Id~nv~~a~~nv~~g~~eL~ka~~~ 277 (304)
..|+.+..+|......|..+..|-.+|-+|
T Consensus 18 ~kVdqLssdV~al~~~v~~ak~eA~RAN~R 47 (52)
T 1jcd_A 18 AKADQASNDANAARSDAQAAKDDAARANQR 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555556666666777777777666554
No 58
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=22.07 E-value=42 Score=24.37 Aligned_cols=27 Identities=7% Similarity=0.133 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 248 ELAIRIDDNMDESLANVEGARNALLRH 274 (304)
Q Consensus 248 e~id~Id~nv~~a~~nv~~g~~eL~ka 274 (304)
.|-|.+++.++.....++....=|.++
T Consensus 13 ~~~d~~~~~~e~~~~f~kd~~rvlk~~ 39 (80)
T 2ww9_B 13 QSNNQVEKLVEAPVEFVREGTQFLAKC 39 (80)
T ss_dssp --------CCHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666676666555443
No 59
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=20.99 E-value=14 Score=32.68 Aligned_cols=57 Identities=5% Similarity=0.070 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021981 212 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGAR 268 (304)
Q Consensus 212 ~~~l~~R~~~i~~ie~~i~eL~~if~~la~~V~~Qge~id~Id~nv~~a~~nv~~g~ 268 (304)
...|..-+..|..|..-..+|+.|..+=+.+|..=+.-|+....||+.+...+..|.
T Consensus 199 ~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~ 255 (267)
T 1dn1_B 199 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 255 (267)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444443
No 60
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=20.30 E-value=2e+02 Score=19.98 Aligned_cols=17 Identities=6% Similarity=0.149 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021981 213 NYSQSRAVALHNVESTI 229 (304)
Q Consensus 213 ~~l~~R~~~i~~ie~~i 229 (304)
..+..+...|..+|..+
T Consensus 18 ~~i~~Kde~I~eLE~~L 34 (67)
T 1zxa_A 18 KILMLKEERIKELEKRL 34 (67)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHH
Confidence 34445555555555443
Done!