Query 021983
Match_columns 304
No_of_seqs 297 out of 1269
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 12:15:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 6.8E-24 2.3E-28 158.8 6.3 60 113-172 2-62 (63)
2 3igm_B PF14_0633 protein; AP2 90.7 0.2 6.7E-06 38.9 3.5 28 109-138 3-31 (77)
3 1u3e_M HNH homing endonuclease 75.0 0.49 1.7E-05 40.1 -0.5 56 94-154 91-146 (174)
4 1z1b_A Integrase; protein-DNA 70.5 4.4 0.00015 35.8 4.6 42 115-160 14-55 (356)
5 3jtz_A Integrase; four strande 51.8 29 0.00098 26.5 5.6 38 124-161 37-76 (88)
6 1x60_A Sporulation-specific N- 30.1 33 0.0011 24.6 2.7 23 136-158 46-68 (79)
7 1b69_A Protein (integrase); in 28.3 53 0.0018 24.7 3.5 28 110-138 8-35 (69)
8 3ju0_A Phage integrase; four s 26.9 1E+02 0.0034 24.4 5.2 43 118-160 29-75 (108)
9 2ftc_I Mitochondrial ribosomal 26.5 78 0.0027 25.7 4.5 35 125-161 80-114 (118)
10 1uta_A FTSN, MSGA, cell divisi 26.3 64 0.0022 23.4 3.7 23 136-158 46-68 (81)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.89 E-value=6.8e-24 Score=158.78 Aligned_cols=60 Identities=67% Similarity=1.127 Sum_probs=56.7
Q ss_pred ceeeeEECCCCcEEEEEeecC-CCeEeecCCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 021983 113 LYRGVRQRHWGKWVAEIRLPK-NRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNL 172 (304)
Q Consensus 113 ~YRGVr~r~~GKW~AeIr~p~-~gkri~LGtFdTaEEAA~AYD~AA~klrG~~A~lNFP~~ 172 (304)
+||||++++||||+|+|++|. +|+++|||+|+|+||||+|||.|+++++|.++.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 699998888999999999986 489999999999999999999999999999999999974
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=90.72 E-value=0.2 Score=38.93 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=23.1
Q ss_pred CCCCceeee-EECCCCcEEEEEeecCCCeEe
Q 021983 109 KPAKLYRGV-RQRHWGKWVAEIRLPKNRTRL 138 (304)
Q Consensus 109 ~ntS~YRGV-r~r~~GKW~AeIr~p~~gkri 138 (304)
..+|+|.|| +.++.+.|+|.-.+ +|++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence 458999999 78899999999987 67664
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=74.97 E-value=0.49 Score=40.09 Aligned_cols=56 Identities=4% Similarity=-0.062 Sum_probs=37.5
Q ss_pred CCCCCCCCCCCCCCCCCCCceeeeEECCCCcEEEEEeecCCCeEeecCCCCCHHHHHHHHH
Q 021983 94 SPKPVPMKTVGCPPPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYD 154 (304)
Q Consensus 94 ~~~~~~mK~~g~~~~~ntS~YRGVr~r~~GKW~AeIr~p~~gkri~LGtFdTaEEAA~AYD 154 (304)
.++.+++++.... ..+ ..++||.....++|.+.|.. + +.++||.|+|.+|||++|.
T Consensus 91 ~t~~eN~~~~~~~-~~~-~~~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 91 VTQKINVENQMSR-GTL-NVSKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp ECHHHHHHHHHHH-TCC-CCHHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred CCHHHHhhccccc-Ccc-cceeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence 5555565554433 111 22567732445779999987 4 6678999999999999964
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=70.50 E-value=4.4 Score=35.81 Aligned_cols=42 Identities=17% Similarity=0.102 Sum_probs=31.4
Q ss_pred eeeEECCCCcEEEEEeecCCCeEeecCCCCCHHHHHHHHHHHHHHH
Q 021983 115 RGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKL 160 (304)
Q Consensus 115 RGVr~r~~GKW~AeIr~p~~gkri~LGtFdTaEEAA~AYD~AA~kl 160 (304)
.||++++.|.|+.+.. .+|+++.+|. |..||..+...+...+
T Consensus 14 ~~v~~~~~g~~~~r~~--~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDP--RTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECT--TTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEee--cCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 4677777799987655 4888999996 8888887766655544
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=51.81 E-value=29 Score=26.53 Aligned_cols=38 Identities=18% Similarity=0.383 Sum_probs=27.6
Q ss_pred cEEEEEeecCCCeEeecCCCC--CHHHHHHHHHHHHHHHc
Q 021983 124 KWVAEIRLPKNRTRLWLGTFD--TAEEAALAYDKAAYKLR 161 (304)
Q Consensus 124 KW~AeIr~p~~gkri~LGtFd--TaEEAA~AYD~AA~klr 161 (304)
.|+-+.+...+.+++-||.|. |..+|....+++...+.
T Consensus 37 ~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l~ 76 (88)
T 3jtz_A 37 HWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKMLA 76 (88)
T ss_dssp EEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHHH
Confidence 498888863334567899997 58888888777776663
No 6
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=30.09 E-value=33 Score=24.62 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=18.5
Q ss_pred eEeecCCCCCHHHHHHHHHHHHH
Q 021983 136 TRLWLGTFDTAEEAALAYDKAAY 158 (304)
Q Consensus 136 kri~LGtFdTaEEAA~AYD~AA~ 158 (304)
-|+++|.|.+.++|..+.++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 56778999999999988766544
No 7
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=28.34 E-value=53 Score=24.69 Aligned_cols=28 Identities=18% Similarity=0.064 Sum_probs=21.7
Q ss_pred CCCceeeeEECCCCcEEEEEeecCCCeEe
Q 021983 110 PAKLYRGVRQRHWGKWVAEIRLPKNRTRL 138 (304)
Q Consensus 110 ntS~YRGVr~r~~GKW~AeIr~p~~gkri 138 (304)
+.-.+.|+.+|..|+|+..+.+ ..|++.
T Consensus 8 gr~L~~GesqR~dG~Y~yry~d-~~Gkr~ 35 (69)
T 1b69_A 8 GRILKTGESQRKDGRYLYKYID-SFGEPQ 35 (69)
T ss_dssp SSCCCTTEEECSSSCEEEEEEC-TTSSEE
T ss_pred CCccCCCeEEccCCcEEEEEEc-CCCCEE
Confidence 3467889999999999999987 345554
No 8
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=26.88 E-value=1e+02 Score=24.40 Aligned_cols=43 Identities=26% Similarity=0.315 Sum_probs=28.4
Q ss_pred EECCCC--cEEEEEeecCCCeEeecCCCC--CHHHHHHHHHHHHHHH
Q 021983 118 RQRHWG--KWVAEIRLPKNRTRLWLGTFD--TAEEAALAYDKAAYKL 160 (304)
Q Consensus 118 r~r~~G--KW~AeIr~p~~gkri~LGtFd--TaEEAA~AYD~AA~kl 160 (304)
+-.+.| .|+-+.+...+.+++-||.|. |..+|....+.+...+
T Consensus 29 ~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 29 LVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 334444 398888763333557799997 4888887777766655
No 9
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=26.52 E-value=78 Score=25.66 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=27.7
Q ss_pred EEEEEeecCCCeEeecCCCCCHHHHHHHHHHHHHHHc
Q 021983 125 WVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLR 161 (304)
Q Consensus 125 W~AeIr~p~~gkri~LGtFdTaEEAA~AYD~AA~klr 161 (304)
|+|.|.. +..-+-++...+++.|..|..+|+.+|=
T Consensus 80 wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 80 YVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred EEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCC
Confidence 9999983 4444447766889999999999998873
No 10
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=26.26 E-value=64 Score=23.41 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=18.5
Q ss_pred eEeecCCCCCHHHHHHHHHHHHH
Q 021983 136 TRLWLGTFDTAEEAALAYDKAAY 158 (304)
Q Consensus 136 kri~LGtFdTaEEAA~AYD~AA~ 158 (304)
-||++|.|.+.++|..+.++...
T Consensus 46 yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 46 NRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 56778999999999888766554
Done!