Query 021986
Match_columns 304
No_of_seqs 271 out of 1689
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:08:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021986.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021986hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00195 DSPc Dual specifici 100.0 2.8E-32 6E-37 226.7 15.8 137 2-194 1-138 (138)
2 KOG1718 Dual specificity phosp 100.0 1.2E-31 2.6E-36 225.6 13.6 141 3-199 18-159 (198)
3 KOG1717 Dual specificity phosp 100.0 8.7E-32 1.9E-36 240.8 11.3 142 1-196 171-313 (343)
4 KOG1716 Dual specificity phosp 100.0 6.3E-30 1.4E-34 238.0 15.1 148 2-202 75-223 (285)
5 cd00127 DSPc Dual specificity 100.0 7.4E-29 1.6E-33 205.4 15.4 137 2-192 2-139 (139)
6 PF00782 DSPc: Dual specificit 100.0 3.6E-29 7.9E-34 206.3 12.6 131 9-193 1-132 (133)
7 PRK12361 hypothetical protein; 99.9 8.5E-25 1.8E-29 220.3 16.0 141 2-195 95-237 (547)
8 KOG1719 Dual specificity phosp 99.9 2.6E-21 5.6E-26 161.2 10.5 141 4-194 27-169 (183)
9 PTZ00242 protein tyrosine phos 99.8 4.1E-20 8.9E-25 159.3 14.2 93 100-194 60-157 (166)
10 PTZ00393 protein tyrosine phos 99.8 1.1E-19 2.4E-24 163.1 14.9 95 100-197 136-231 (241)
11 KOG1720 Protein tyrosine phosp 99.6 2.5E-15 5.3E-20 131.4 13.2 94 99-193 113-206 (225)
12 COG2453 CDC14 Predicted protei 99.6 1.5E-15 3.2E-20 132.5 10.8 93 99-194 70-164 (180)
13 PF05706 CDKN3: Cyclin-depende 99.4 7.2E-13 1.6E-17 113.1 8.2 106 17-168 61-168 (168)
14 PF03162 Y_phosphatase2: Tyros 99.4 2.3E-12 5E-17 110.9 9.6 139 3-194 8-149 (164)
15 TIGR01244 conserved hypothetic 99.4 6.8E-12 1.5E-16 104.6 12.1 127 3-179 3-129 (135)
16 KOG2836 Protein tyrosine phosp 99.2 9E-11 2E-15 96.2 11.6 90 101-193 62-154 (173)
17 smart00012 PTPc_DSPc Protein t 99.2 2.8E-10 6.1E-15 88.6 11.1 85 105-189 6-100 (105)
18 smart00404 PTPc_motif Protein 99.2 2.8E-10 6.1E-15 88.6 11.1 85 105-189 6-100 (105)
19 PF04273 DUF442: Putative phos 99.1 2.2E-10 4.8E-15 92.2 7.7 102 3-153 3-104 (110)
20 COG5350 Predicted protein tyro 98.9 8E-09 1.7E-13 86.5 10.4 71 117-187 76-147 (172)
21 cd00047 PTPc Protein tyrosine 98.9 1E-08 2.2E-13 92.2 10.8 89 101-189 129-226 (231)
22 PLN02727 NAD kinase 98.9 1.1E-08 2.3E-13 106.6 10.6 109 8-163 262-370 (986)
23 smart00194 PTPc Protein tyrosi 98.8 2.6E-08 5.7E-13 91.1 10.2 79 111-189 168-253 (258)
24 COG3453 Uncharacterized protei 98.7 1.2E-07 2.5E-12 76.6 10.0 121 3-174 4-125 (130)
25 PF13350 Y_phosphatase3: Tyros 98.5 1.4E-06 3.1E-11 74.5 10.3 34 135-169 125-158 (164)
26 PRK15375 pathogenicity island 98.4 2E-06 4.3E-11 85.1 10.7 93 102-194 423-528 (535)
27 PHA02742 protein tyrosine phos 98.3 2.8E-06 6E-11 80.1 10.3 53 135-187 230-287 (303)
28 PF00102 Y_phosphatase: Protei 98.3 2.7E-06 5.9E-11 75.6 9.5 70 121-190 155-231 (235)
29 KOG2283 Clathrin coat dissocia 98.3 3.1E-06 6.6E-11 83.2 8.6 89 105-194 76-173 (434)
30 PHA02740 protein tyrosine phos 98.3 6.3E-06 1.4E-10 77.5 10.3 53 135-187 222-279 (298)
31 PHA02747 protein tyrosine phos 98.3 6.8E-06 1.5E-10 77.8 10.6 54 135-188 230-288 (312)
32 PF14566 PTPlike_phytase: Inos 98.2 1.5E-06 3.4E-11 73.5 4.8 60 97-158 88-148 (149)
33 PHA02746 protein tyrosine phos 98.2 1E-05 2.2E-10 77.0 10.7 55 135-189 248-307 (323)
34 KOG1572 Predicted protein tyro 98.2 1.1E-05 2.4E-10 72.5 9.3 118 3-174 61-187 (249)
35 PHA02738 hypothetical protein; 98.1 2.6E-05 5.6E-10 74.1 10.6 54 135-188 228-286 (320)
36 PF04179 Init_tRNA_PT: Initiat 97.9 8.3E-05 1.8E-09 73.6 11.5 90 102-191 339-449 (451)
37 KOG0792 Protein tyrosine phosp 97.8 7.3E-05 1.6E-09 78.9 8.5 81 108-188 1035-1122(1144)
38 COG2365 Protein tyrosine/serin 97.7 0.00019 4.2E-09 65.8 9.0 63 135-197 137-199 (249)
39 COG5599 PTP2 Protein tyrosine 97.7 7.8E-05 1.7E-09 68.1 5.7 86 101-190 184-288 (302)
40 KOG2386 mRNA capping enzyme, g 97.3 0.0003 6.5E-09 68.0 5.4 98 99-196 84-186 (393)
41 KOG0790 Protein tyrosine phosp 97.2 0.00034 7.4E-09 68.0 3.7 56 133-188 450-513 (600)
42 KOG0789 Protein tyrosine phosp 97.1 0.0018 3.9E-08 62.9 8.3 53 134-186 299-357 (415)
43 KOG0791 Protein tyrosine phosp 97.0 0.0022 4.7E-08 61.2 7.5 57 134-190 287-348 (374)
44 KOG0793 Protein tyrosine phosp 95.5 0.028 6E-07 57.8 6.2 50 136-185 929-984 (1004)
45 PF14671 DSPn: Dual specificit 95.3 0.065 1.4E-06 45.0 6.8 66 110-176 39-112 (141)
46 KOG4228 Protein tyrosine phosp 95.0 0.025 5.5E-07 60.7 4.2 67 119-185 710-786 (1087)
47 KOG4228 Protein tyrosine phosp 94.1 0.092 2E-06 56.6 6.0 54 134-187 1018-1076(1087)
48 KOG4471 Phosphatidylinositol 3 88.0 0.92 2E-05 46.2 5.4 32 127-158 365-399 (717)
49 PF06602 Myotub-related: Myotu 77.8 4.8 0.0001 38.9 5.7 21 133-153 229-250 (353)
50 KOG1089 Myotubularin-related p 77.4 3.6 7.7E-05 42.0 4.8 30 124-153 332-363 (573)
51 cd01518 RHOD_YceA Member of th 77.3 10 0.00022 28.9 6.5 26 135-163 62-87 (101)
52 PRK01415 hypothetical protein; 68.3 9.9 0.00021 34.9 5.1 27 134-163 171-197 (247)
53 smart00400 ZnF_CHCC zinc finge 61.1 11 0.00023 26.1 3.0 32 138-171 23-54 (55)
54 PLN02160 thiosulfate sulfurtra 58.3 15 0.00033 30.2 4.0 26 135-163 82-107 (136)
55 PF03668 ATP_bind_2: P-loop AT 57.5 13 0.00028 34.9 3.8 19 136-154 244-262 (284)
56 PF03861 ANTAR: ANTAR domain; 56.0 18 0.0004 25.0 3.5 26 149-174 15-40 (56)
57 cd01533 4RHOD_Repeat_2 Member 53.3 25 0.00055 27.1 4.4 25 135-162 67-91 (109)
58 PRK00142 putative rhodanese-re 53.1 65 0.0014 30.5 7.9 26 135-163 172-197 (314)
59 PRK05416 glmZ(sRNA)-inactivati 52.1 18 0.0004 33.9 3.9 34 120-153 223-264 (288)
60 COG0607 PspE Rhodanese-related 52.0 13 0.00029 28.3 2.5 27 134-163 61-87 (110)
61 PF01807 zf-CHC2: CHC2 zinc fi 49.3 20 0.00042 27.9 3.1 39 136-176 52-90 (97)
62 PF00581 Rhodanese: Rhodanese- 46.7 77 0.0017 23.8 6.2 58 105-163 34-98 (113)
63 TIGR03865 PQQ_CXXCW PQQ-depend 46.0 38 0.00082 28.7 4.6 27 135-163 117-143 (162)
64 cd01528 RHOD_2 Member of the R 43.7 51 0.0011 24.9 4.7 26 135-163 59-84 (101)
65 COG1660 Predicted P-loop-conta 42.0 28 0.00061 32.5 3.3 17 136-152 245-261 (286)
66 COG1831 Predicted metal-depend 41.0 1.9E+02 0.0041 27.1 8.5 72 98-173 32-108 (285)
67 cd01520 RHOD_YbbB Member of th 40.7 49 0.0011 26.5 4.3 25 136-162 88-112 (128)
68 cd04445 DEP_PLEK1 DEP (Disheve 39.4 39 0.00085 26.6 3.3 36 133-173 23-59 (99)
69 PF02673 BacA: Bacitracin resi 39.3 33 0.00073 31.6 3.5 27 143-171 160-186 (259)
70 cd01532 4RHOD_Repeat_1 Member 38.7 41 0.00088 25.2 3.4 28 135-163 51-78 (92)
71 cd01448 TST_Repeat_1 Thiosulfa 37.4 35 0.00077 26.7 3.0 26 136-163 81-106 (122)
72 PRK05320 rhodanese superfamily 37.0 57 0.0012 30.0 4.6 27 134-163 175-201 (257)
73 PRK12554 undecaprenyl pyrophos 36.9 35 0.00076 31.9 3.2 26 143-170 166-191 (276)
74 TIGR00753 undec_PP_bacA undeca 36.6 36 0.00079 31.4 3.3 26 143-170 160-185 (255)
75 cd01444 GlpE_ST GlpE sulfurtra 35.7 69 0.0015 23.6 4.3 25 135-162 57-81 (96)
76 PRK00281 undecaprenyl pyrophos 34.7 42 0.0009 31.2 3.3 26 143-170 164-189 (268)
77 PF13344 Hydrolase_6: Haloacid 33.3 2.2E+02 0.0049 21.8 7.5 55 121-176 16-79 (101)
78 COG0279 GmhA Phosphoheptose is 32.7 69 0.0015 27.8 4.1 33 115-150 21-54 (176)
79 TIGR03642 cas_csx13 CRISPR-ass 31.1 1.6E+02 0.0034 24.2 5.8 57 105-161 57-116 (124)
80 PHA02540 61 DNA primase; Provi 30.7 82 0.0018 30.3 4.7 37 135-174 52-89 (337)
81 cd01534 4RHOD_Repeat_3 Member 29.8 56 0.0012 24.5 2.8 26 135-163 57-82 (95)
82 PF10302 DUF2407: DUF2407 ubiq 29.8 26 0.00057 27.4 1.0 10 135-144 86-95 (97)
83 COG4738 Predicted transcriptio 29.7 42 0.00091 27.2 2.1 33 142-175 22-54 (124)
84 cd01522 RHOD_1 Member of the R 29.3 74 0.0016 25.1 3.6 25 135-162 65-89 (117)
85 cd01523 RHOD_Lact_B Member of 28.3 81 0.0017 23.7 3.6 26 135-163 62-87 (100)
86 COG0794 GutQ Predicted sugar p 28.2 1.1E+02 0.0024 27.3 4.8 35 120-159 27-61 (202)
87 PRK05772 translation initiatio 28.1 1E+02 0.0022 30.0 4.9 11 134-144 166-177 (363)
88 COG2927 HolC DNA polymerase II 27.5 57 0.0012 27.5 2.7 20 123-142 17-37 (144)
89 PRK10886 DnaA initiator-associ 27.2 1.3E+02 0.0028 26.5 5.0 35 118-155 24-59 (196)
90 TIGR01391 dnaG DNA primase, ca 26.7 1.8E+02 0.0039 28.7 6.5 37 138-176 55-91 (415)
91 PF03853 YjeF_N: YjeF-related 26.7 42 0.0009 28.6 1.8 73 123-200 11-86 (169)
92 KOG0235 Phosphoglycerate mutas 26.4 2.5E+02 0.0055 25.2 6.8 51 113-169 130-185 (214)
93 TIGR00853 pts-lac PTS system, 26.4 44 0.00095 25.8 1.7 12 135-146 4-15 (95)
94 COG3707 AmiR Response regulato 26.1 64 0.0014 28.6 2.8 22 153-174 151-172 (194)
95 cd01447 Polysulfide_ST Polysul 25.7 62 0.0013 24.2 2.5 25 135-162 62-86 (103)
96 PRK05728 DNA polymerase III su 25.6 82 0.0018 26.2 3.3 24 120-143 14-38 (142)
97 cd01443 Cdc25_Acr2p Cdc25 enzy 24.7 2E+02 0.0042 22.2 5.3 16 136-151 68-83 (113)
98 cd01525 RHOD_Kc Member of the 24.6 89 0.0019 23.5 3.2 26 134-162 65-90 (105)
99 cd01529 4RHOD_Repeats Member o 24.3 84 0.0018 23.4 3.0 25 135-162 57-81 (96)
100 COG1968 BacA Undecaprenyl pyro 23.5 85 0.0018 29.3 3.3 26 143-170 165-190 (270)
101 PF09419 PGP_phosphatase: Mito 23.4 55 0.0012 28.3 1.9 31 2-33 14-46 (168)
102 TIGR02981 phageshock_pspE phag 23.4 1.6E+02 0.0034 22.9 4.4 24 136-162 60-83 (101)
103 COG1054 Predicted sulfurtransf 23.0 4.7E+02 0.01 24.9 8.0 39 121-162 156-197 (308)
104 TIGR02094 more_P_ylases alpha- 22.6 1.9E+02 0.0041 30.1 6.0 36 135-173 161-199 (601)
105 PF08159 NUC153: NUC153 domain 22.6 55 0.0012 20.0 1.3 20 189-208 6-25 (30)
106 PRK06646 DNA polymerase III su 22.5 1E+02 0.0022 26.2 3.4 25 120-144 14-39 (154)
107 PF04364 DNA_pol3_chi: DNA pol 21.6 1.1E+02 0.0023 25.2 3.3 23 121-143 15-38 (137)
108 cd05567 PTS_IIB_mannitol PTS_I 21.4 83 0.0018 23.5 2.4 13 136-148 2-14 (87)
109 cd01526 RHOD_ThiF Member of th 21.3 1E+02 0.0022 24.3 3.1 25 135-162 73-97 (122)
110 PRK13938 phosphoheptose isomer 20.7 2.3E+02 0.0049 24.9 5.3 39 115-156 25-64 (196)
111 PRK06036 translation initiatio 20.5 1.4E+02 0.003 28.8 4.2 15 134-148 147-162 (339)
No 1
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=100.00 E-value=2.8e-32 Score=226.71 Aligned_cols=137 Identities=34% Similarity=0.519 Sum_probs=124.5
Q ss_pred CccccCCeEecChHhHhcHHhhhcCCCeEEEEcccccccchhhhccccCCCCcccccccccCCCCCCCCCCCcCCCCCCc
Q 021986 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (304)
Q Consensus 2 P~~I~p~LylG~~~~a~d~~~L~~~gIt~VInl~~~~~~~~~~~w~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~p~ 81 (304)
|++|.|+||+|+..++.+.+.|+++||++|||++.+.
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~------------------------------------------- 37 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEV------------------------------------------- 37 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCC-------------------------------------------
Confidence 8999999999999999999999999999999997621
Q ss_pred cCCCCcchhhhhhhhcCCcceEEEEEeccCCCCCCHHHHHHHHHHHHHHHHHcC-CeEEEecCCCchhHHHHHHHHHhhc
Q 021986 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE 160 (304)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AYLm~~~ 160 (304)
. . ....++.|+++|+.|....++.+.|..+++||+..+++| +|||||.+|+|||+++++||||+..
T Consensus 38 -~--~----------~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~ 104 (138)
T smart00195 38 -P--N----------LNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKYR 104 (138)
T ss_pred -C--C----------CCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHHh
Confidence 0 0 012357899999999888889999999999999998876 9999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHc
Q 021986 161 QLSSEGALESLRQSCESVCPNDGFLEQLKMFEEM 194 (304)
Q Consensus 161 ~~s~~eAl~~Vr~~Rp~i~pn~~f~~qL~~~e~~ 194 (304)
||++++|+++|+++||.+.||.+|++||+.||++
T Consensus 105 ~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~~ 138 (138)
T smart00195 105 NLSLNDAYDFVKDRRPIISPNFGFLRQLIEYERK 138 (138)
T ss_pred CCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhhC
Confidence 9999999999999999999999999999999974
No 2
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=1.2e-31 Score=225.61 Aligned_cols=141 Identities=32% Similarity=0.404 Sum_probs=126.0
Q ss_pred ccccCCeEecChHhHhcHHhhhcCCCeEEEEcccccccchhhhccccCCCCcccccccccCCCCCCCCCCCcCCCCCCcc
Q 021986 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (304)
Q Consensus 3 ~~I~p~LylG~~~~a~d~~~L~~~gIt~VInl~~~~~~~~~~~w~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~p~~ 82 (304)
+||++.|||++-..|.+...|+++|||+|||++.+.
T Consensus 18 SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~-------------------------------------------- 53 (198)
T KOG1718|consen 18 SQITPSLFLSNGVAANDKLLLKKRKITCIINATTEV-------------------------------------------- 53 (198)
T ss_pred hhcCcceeEeccccccCHHHHHhcCceEEEEcccCC--------------------------------------------
Confidence 689999999988889999999999999999997521
Q ss_pred CCCCcchhhhhhhhcCCcceEEEEEeccCCCCCCHHHHHHHHHHHHHHHHHc-CCeEEEecCCCchhHHHHHHHHHhhcC
Q 021986 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKE-GGVLVHCFAGVSRSAAIITAYLMRTEQ 161 (304)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~-g~VLVHC~aG~sRS~tvv~AYLm~~~~ 161 (304)
+...+ -++.|..+|+.|.+...+.+||+.+.|.|+..... |++||||.||+||||++|+||||+..+
T Consensus 54 --pn~~l----------~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~ 121 (198)
T KOG1718|consen 54 --PNTSL----------PDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRGGKTLVHCVAGVSRSASLCLAYLMKYHC 121 (198)
T ss_pred --CCccC----------CCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcCCcEEEEEccccchhHHHHHHHHHHHcc
Confidence 11100 14779999999999999999999999999998655 599999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHcCCCCC
Q 021986 162 LSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGFKVN 199 (304)
Q Consensus 162 ~s~~eAl~~Vr~~Rp~i~pn~~f~~qL~~~e~~~~~~~ 199 (304)
+++.||+.++|++||.|.||.|||+||..||+.++.-.
T Consensus 122 msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~~ 159 (198)
T KOG1718|consen 122 MSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGNA 159 (198)
T ss_pred chHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999876554
No 3
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=8.7e-32 Score=240.82 Aligned_cols=142 Identities=30% Similarity=0.500 Sum_probs=129.0
Q ss_pred CCccccCCeEecChHhHhcHHhhhcCCCeEEEEcccccccchhhhccccCCCCcccccccccCCCCCCCCCCCcCCCCCC
Q 021986 1 MPYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGS 80 (304)
Q Consensus 1 ~P~~I~p~LylG~~~~a~d~~~L~~~gIt~VInl~~~~~~~~~~~w~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~p 80 (304)
.|.||+|+||||+..++.+.+.|++.||++||||+...
T Consensus 171 FPV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnl------------------------------------------ 208 (343)
T KOG1717|consen 171 FPVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNL------------------------------------------ 208 (343)
T ss_pred cchhhccchhcccccccccHHHHHhcCceEEEecCCCC------------------------------------------
Confidence 38899999999999999999999999999999997611
Q ss_pred ccCCCCcchhhhhhhhcCCcceEEEEEeccCCCCCCHHHHHHHHHHHHHHHHHcC-CeEEEecCCCchhHHHHHHHHHhh
Q 021986 81 RSCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRT 159 (304)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AYLm~~ 159 (304)
|..+ ...-.+.|++||+.|....++.+.|++++.||++++.+. .|||||.+|+|||+||++||||++
T Consensus 209 -----pn~f-------e~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvTvtvaYLMqk 276 (343)
T KOG1717|consen 209 -----PNNF-------ENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVTVTVAYLMQK 276 (343)
T ss_pred -----cchh-------hcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchhHHHHHHHHHH
Confidence 1111 122358899999999999999999999999999999877 999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHcCC
Q 021986 160 EQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGF 196 (304)
Q Consensus 160 ~~~s~~eAl~~Vr~~Rp~i~pn~~f~~qL~~~e~~~~ 196 (304)
..+++.+|+++|+.++..|.||.+||.||..||+++.
T Consensus 277 l~lslndAyd~Vk~kksnisPNFnFMgQLldfertlg 313 (343)
T KOG1717|consen 277 LNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLG 313 (343)
T ss_pred hccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhh
Confidence 9999999999999999999999999999999999854
No 4
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=6.3e-30 Score=238.05 Aligned_cols=148 Identities=35% Similarity=0.480 Sum_probs=131.2
Q ss_pred CccccCCeEecChHhHhcHHhhhcCCCeEEEEcccccccchhhhccccCCCCcccccccccCCCCCCCCCCCcCCCCCCc
Q 021986 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (304)
Q Consensus 2 P~~I~p~LylG~~~~a~d~~~L~~~gIt~VInl~~~~~~~~~~~w~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~p~ 81 (304)
+.+|.|+||+|+..++.+.+.|++.|||||||+.......
T Consensus 75 ~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~---------------------------------------- 114 (285)
T KOG1716|consen 75 IVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNP---------------------------------------- 114 (285)
T ss_pred ceeecCCceecCcccccchhhHHHcCCCEEEEecccCCcc----------------------------------------
Confidence 4689999999999999999999999999999997732000
Q ss_pred cCCCCcchhhhhhhhcCCcceEEEEEeccCCCCCCHHHHHHHHHHHHHHHHHcC-CeEEEecCCCchhHHHHHHHHHhhc
Q 021986 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE 160 (304)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AYLm~~~ 160 (304)
. + .....+.|++|++.|.+..+|..+|+++++||+.++..| +|||||.+|+|||+|+++||||+.+
T Consensus 115 -----~-------~-~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~viAYlM~~~ 181 (285)
T KOG1716|consen 115 -----R-------F-LKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKAREKGGKVLVHCQAGVSRSATLVIAYLMKYE 181 (285)
T ss_pred -----c-------c-ccccCceEEeccccCCccccHHHHHHHHHHHHHHHHhCCCeEEEEcCCccchhHHHHHHHHHHHc
Confidence 0 0 011157899999999999999999999999999999876 9999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHcCCCCCCCC
Q 021986 161 QLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGFKVNRGS 202 (304)
Q Consensus 161 ~~s~~eAl~~Vr~~Rp~i~pn~~f~~qL~~~e~~~~~~~~~~ 202 (304)
+|++++|+++|+++||.+.||.+|+.||..||+++.......
T Consensus 182 ~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~~~~ 223 (285)
T KOG1716|consen 182 GLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKSPSQ 223 (285)
T ss_pred CCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCCccc
Confidence 999999999999999999999999999999999987766544
No 5
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.96 E-value=7.4e-29 Score=205.40 Aligned_cols=137 Identities=37% Similarity=0.524 Sum_probs=122.7
Q ss_pred CccccCCeEecChHhHhcHHhhhcCCCeEEEEcccccccchhhhccccCCCCcccccccccCCCCCCCCCCCcCCCCCCc
Q 021986 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (304)
Q Consensus 2 P~~I~p~LylG~~~~a~d~~~L~~~gIt~VInl~~~~~~~~~~~w~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~p~ 81 (304)
+++|.|+||+|+..++.+.+.|+.+||++|||++.+.
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~------------------------------------------- 38 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEV------------------------------------------- 38 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCC-------------------------------------------
Confidence 5899999999999999999999999999999998621
Q ss_pred cCCCCcchhhhhhhhcCCcceEEEEEeccCCCCCCHHHHHHHHHHHHHHHHHcC-CeEEEecCCCchhHHHHHHHHHhhc
Q 021986 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE 160 (304)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AYLm~~~ 160 (304)
+. + .....++.|+++|+.|....++...+..+++||+...++| +|||||.+|.|||+++++||||...
T Consensus 39 -~~-~---------~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~ 107 (139)
T cd00127 39 -PN-E---------NLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMKTL 107 (139)
T ss_pred -CC-c---------ccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHHHHHc
Confidence 00 0 0112357889999999988888889999999999998876 9999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhCCCccCCHHHHHHHHHHH
Q 021986 161 QLSSEGALESLRQSCESVCPNDGFLEQLKMFE 192 (304)
Q Consensus 161 ~~s~~eAl~~Vr~~Rp~i~pn~~f~~qL~~~e 192 (304)
++++++|+++||++||.+.||.+|++||..||
T Consensus 108 ~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 108 GLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred CCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999996
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.96 E-value=3.6e-29 Score=206.33 Aligned_cols=131 Identities=36% Similarity=0.566 Sum_probs=116.9
Q ss_pred eEecChHhHhcHHhhhcCCCeEEEEcccccccchhhhccccCCCCcccccccccCCCCCCCCCCCcCCCCCCccCCCCcc
Q 021986 9 LFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRSCLSPTK 88 (304)
Q Consensus 9 LylG~~~~a~d~~~L~~~gIt~VInl~~~~~~~~~~~w~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~p~~~~~~~~ 88 (304)
||+|+..++. .+.|+++||++|||++..... +
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~---------------------------------------------~-- 32 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPN---------------------------------------------P-- 32 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSST---------------------------------------------S--
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcC---------------------------------------------c--
Confidence 7999999999 999999999999999762100 0
Q ss_pred hhhhhhhhcCCcceEEEEEeccCCCCCCHHHHHHHHHHHHHHHHHcC-CeEEEecCCCchhHHHHHHHHHhhcCCCHHHH
Q 021986 89 LLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGA 167 (304)
Q Consensus 89 ~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AYLm~~~~~s~~eA 167 (304)
......++.|+++|+.|....++.+.|+.+++||+++.++| +|||||.+|+|||+++++||||..++|++++|
T Consensus 33 ------~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A 106 (133)
T PF00782_consen 33 ------YFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMSLEEA 106 (133)
T ss_dssp ------HHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHHHHTSSHHHH
T ss_pred ------hhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHHHHHcCCCHHHH
Confidence 00122357899999999889999999999999999998766 99999999999999999999999999999999
Q ss_pred HHHHHHhCCCccCCHHHHHHHHHHHH
Q 021986 168 LESLRQSCESVCPNDGFLEQLKMFEE 193 (304)
Q Consensus 168 l~~Vr~~Rp~i~pn~~f~~qL~~~e~ 193 (304)
+++|+++||.+.||.+|++||..||+
T Consensus 107 ~~~v~~~rp~~~~~~~~~~~L~~~e~ 132 (133)
T PF00782_consen 107 IEYVRSRRPQINPNPSFIRQLYEYEK 132 (133)
T ss_dssp HHHHHHHSTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999997
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.92 E-value=8.5e-25 Score=220.29 Aligned_cols=141 Identities=26% Similarity=0.372 Sum_probs=120.8
Q ss_pred CccccCCeEecChHhHhcHHhhhcCCCeEEEEcccccccchhhhccccCCCCcccccccccCCCCCCCCCCCcCCCCCCc
Q 021986 2 PYLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSR 81 (304)
Q Consensus 2 P~~I~p~LylG~~~~a~d~~~L~~~gIt~VInl~~~~~~~~~~~w~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~p~ 81 (304)
+++|.|+||+|+...+.|.+.|+++||++|||++.+. .
T Consensus 95 ~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~--------~---------------------------------- 132 (547)
T PRK12361 95 IQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEF--------D---------------------------------- 132 (547)
T ss_pred ceEEcCcEEECCCCCcccHHHHHHcCCCEEEEccccc--------c----------------------------------
Confidence 3689999999999999999999999999999997521 0
Q ss_pred cCCCCcchhhhhhhhcCCcceEEEEEeccCCCCCCHHHHHHHHHHHHHHHHHcC-CeEEEecCCCchhHHHHHHHHHhh-
Q 021986 82 SCLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRT- 159 (304)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AYLm~~- 159 (304)
..+.. ....++.|+++|+.|...++. ++|+++++||++++++| +|||||.+|+|||+++++||||.+
T Consensus 133 -~~~~~---------~~~~~i~yl~iPi~D~~~p~~-~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~ 201 (547)
T PRK12361 133 -GLDWS---------LTEEDIDYLNIPILDHSVPTL-AQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKD 201 (547)
T ss_pred -ccccc---------ccccCceEEEeecCCCCCCcH-HHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhc
Confidence 00000 011247899999999877654 67999999999999875 999999999999999999999976
Q ss_pred cCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHcC
Q 021986 160 EQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMG 195 (304)
Q Consensus 160 ~~~s~~eAl~~Vr~~Rp~i~pn~~f~~qL~~~e~~~ 195 (304)
.++++++|+++||++||.+.||++|+++|+.|++.+
T Consensus 202 ~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~ 237 (547)
T PRK12361 202 PDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQG 237 (547)
T ss_pred cCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcC
Confidence 589999999999999999999999999999999875
No 8
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.85 E-value=2.6e-21 Score=161.17 Aligned_cols=141 Identities=24% Similarity=0.414 Sum_probs=116.2
Q ss_pred cccCCeEecChH-hHhcHHhhhcCCCeEEEEcccccccchhhhccccCCCCcccccccccCCCCCCCCCCCcCCCCCCcc
Q 021986 4 LVREHLFIGNIS-DAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (304)
Q Consensus 4 ~I~p~LylG~~~-~a~d~~~L~~~gIt~VInl~~~~~~~~~~~w~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~p~~ 82 (304)
.|++.+.+|-++ ..++.+.+++.|+..|+++.++- +
T Consensus 27 ~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~y-------------------------------------------E 63 (183)
T KOG1719|consen 27 RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPY-------------------------------------------E 63 (183)
T ss_pred eecceEEEeecccccccchHHHhcCCCeEEEeCCch-------------------------------------------h
Confidence 355566666552 23667889999999999997621 1
Q ss_pred CCCCcchhhhhhhhcCCcceEEEEEeccCCCCCCHHHHHHHHHHHHHHHHHcC-CeEEEecCCCchhHHHHHHHHHhhcC
Q 021986 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQ 161 (304)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AYLm~~~~ 161 (304)
-..+.+ . -+..++.++.||..|....+-.+.+.++++||++-...| .|+|||.||.+||+|+|+||||+..+
T Consensus 64 ~~a~s~-~------wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~ 136 (183)
T KOG1719|consen 64 LLAPSN-L------WKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKN 136 (183)
T ss_pred hhhhhH-H------HHhccceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhhcC
Confidence 111111 1 234578899999999888888888999999999988778 89999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHc
Q 021986 162 LSSEGALESLRQSCESVCPNDGFLEQLKMFEEM 194 (304)
Q Consensus 162 ~s~~eAl~~Vr~~Rp~i~pn~~f~~qL~~~e~~ 194 (304)
|++++|+++||++||.|-..+++|+.|.+|.+.
T Consensus 137 wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~ 169 (183)
T KOG1719|consen 137 WTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQ 169 (183)
T ss_pred CCHHHHHHHHHhcCcceeecHHHHHHHHHHHHH
Confidence 999999999999999999999999999999864
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.84 E-value=4.1e-20 Score=159.29 Aligned_cols=93 Identities=18% Similarity=0.262 Sum_probs=79.9
Q ss_pred cceEEEEEeccCCCCCCHHHHHHHHHHHHHHHHHc----C-CeEEEecCCCchhHHHHHHHHHhhcCCCHHHHHHHHHHh
Q 021986 100 LKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKE----G-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQS 174 (304)
Q Consensus 100 ~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~----g-~VLVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~~Vr~~ 174 (304)
.++.++++|+.|...+... .+.+.++++++.++. | +|+|||.+|+|||++++++|||...++++++|+++||++
T Consensus 60 ~gi~~~~~p~~D~~~P~~~-~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~ 138 (166)
T PTZ00242 60 NGIEVHDWPFDDGAPPPKA-VIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREK 138 (166)
T ss_pred CCCEEEecCCCCCCCCCHH-HHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3678899999887655543 477788888887643 5 999999999999999999999999899999999999999
Q ss_pred CCCccCCHHHHHHHHHHHHc
Q 021986 175 CESVCPNDGFLEQLKMFEEM 194 (304)
Q Consensus 175 Rp~i~pn~~f~~qL~~~e~~ 194 (304)
||.+ +|..|+.+|..|++.
T Consensus 139 R~~~-i~~~Q~~~l~~~~~~ 157 (166)
T PTZ00242 139 RKGA-INQTQLQFLKKYKPR 157 (166)
T ss_pred CCCC-chHHHHHHHHHHHHH
Confidence 9975 589999999999874
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.83 E-value=1.1e-19 Score=163.13 Aligned_cols=95 Identities=19% Similarity=0.280 Sum_probs=83.7
Q ss_pred cceEEEEEeccCCCCCCHHHHHHHHHHHHHHHHHcC-CeEEEecCCCchhHHHHHHHHHhhcCCCHHHHHHHHHHhCCCc
Q 021986 100 LKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCESV 178 (304)
Q Consensus 100 ~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~~Vr~~Rp~i 178 (304)
.++.++++|+.|...++. +.+++.+++|++.++.| +|+|||.+|+|||+++++||||. .|+++++|+++||++||.+
T Consensus 136 ~GI~~~~lpipDg~aPs~-~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~-~GmspeeAI~~VR~~RPgA 213 (241)
T PTZ00393 136 AGINVHELIFPDGDAPTV-DIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIE-FGMDPIDAIVFIRDRRKGA 213 (241)
T ss_pred cCCeEEEeecCCCCCCCH-HHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHCCCC
Confidence 468889999999877764 44788889998888777 99999999999999999999997 6999999999999999977
Q ss_pred cCCHHHHHHHHHHHHcCCC
Q 021986 179 CPNDGFLEQLKMFEEMGFK 197 (304)
Q Consensus 179 ~pn~~f~~qL~~~e~~~~~ 197 (304)
+|..|++.|+.|++...+
T Consensus 214 -In~~Q~~fL~~y~~~~~k 231 (241)
T PTZ00393 214 -INKRQLQFLKAYKKKKKK 231 (241)
T ss_pred -CCHHHHHHHHHHHHhccc
Confidence 699999999999987543
No 11
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.64 E-value=2.5e-15 Score=131.44 Aligned_cols=94 Identities=19% Similarity=0.252 Sum_probs=82.3
Q ss_pred CcceEEEEEeccCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEecCCCchhHHHHHHHHHhhcCCCHHHHHHHHHHhCCCc
Q 021986 99 DLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCESV 178 (304)
Q Consensus 99 ~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~~Vr~~Rp~i 178 (304)
+.+|.++.+++.|...++... +.+.++..+.+.+.|+|.|||.+|.|||+++++||||+.++++..||+.+||..||..
T Consensus 113 ~~Gi~h~~l~f~Dg~tP~~~~-v~~fv~i~e~~~~~g~iaVHCkaGlGRTG~liAc~lmy~~g~ta~eaI~~lR~~RpG~ 191 (225)
T KOG1720|consen 113 DAGIDHHDLFFADGSTPTDAI-VKEFVKIVENAEKGGKIAVHCKAGLGRTGTLIACYLMYEYGMTAGEAIAWLRICRPGA 191 (225)
T ss_pred ccCceeeeeecCCCCCCCHHH-HHHHHHHHHHHHhcCeEEEEeccCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCcc
Confidence 457899999999988777655 6677777777777669999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHH
Q 021986 179 CPNDGFLEQLKMFEE 193 (304)
Q Consensus 179 ~pn~~f~~qL~~~e~ 193 (304)
...+.+...+.+|..
T Consensus 192 V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 192 VIGPQQHKLLHKQRD 206 (225)
T ss_pred ccCHHHHHHHHHHHH
Confidence 888888888877765
No 12
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.63 E-value=1.5e-15 Score=132.54 Aligned_cols=93 Identities=28% Similarity=0.381 Sum_probs=76.2
Q ss_pred CcceEEEEEeccCCCCCCHHHHHHHHHHHHHHHHHcC-CeEEEecCCCchhHHHHHHHHHhhcC-CCHHHHHHHHHHhCC
Q 021986 99 DLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQ-LSSEGALESLRQSCE 176 (304)
Q Consensus 99 ~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AYLm~~~~-~s~~eAl~~Vr~~Rp 176 (304)
..++.++++|+.|...+++. .++++++||+++.++| +|+|||.+|+|||+|+++||||...+ +..++|+..++.+||
T Consensus 70 ~~~~~~~~~~~~D~~~p~~~-~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r~ 148 (180)
T COG2453 70 NDGIQVLHLPILDGTVPDLE-DLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRRP 148 (180)
T ss_pred cCCceeeeeeecCCCCCcHH-HHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 34678899999999999984 4999999999999988 99999999999999999999999955 557777777777777
Q ss_pred CccCCHHHHHHHHHHHHc
Q 021986 177 SVCPNDGFLEQLKMFEEM 194 (304)
Q Consensus 177 ~i~pn~~f~~qL~~~e~~ 194 (304)
. ++....+++..++..
T Consensus 149 ~--~v~~~~q~~~~~e~~ 164 (180)
T COG2453 149 G--AVVTEIQHLFELEQE 164 (180)
T ss_pred c--ccccHHHHHHHHHHH
Confidence 5 555555555555544
No 13
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.40 E-value=7.2e-13 Score=113.06 Aligned_cols=106 Identities=21% Similarity=0.319 Sum_probs=66.1
Q ss_pred HhcHHhhhcCCCeEEEEcccccccchhhhccccCCCCcccccccccCCCCCCCCCCCcCCCCCCccCCCCcchhhhhhhh
Q 021986 17 AADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRSCLSPTKLLYSLEYA 96 (304)
Q Consensus 17 a~d~~~L~~~gIt~VInl~~~~~~~~~~~w~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 96 (304)
..|++.|+..|++.||++.+.. +++...+.. + ...
T Consensus 61 ~~DL~~Lk~~G~~~Vvtl~~~~-----------------EL~~l~Vp~------------------------L----~~~ 95 (168)
T PF05706_consen 61 QADLERLKDWGAQDVVTLLTDH-----------------ELARLGVPD------------------------L----GEA 95 (168)
T ss_dssp HHHHHHHHHTT--EEEE-S-HH-----------------HHHHTT-TT------------------------H----HHH
T ss_pred HHHHHHHHHCCCCEEEEeCcHH-----------------HHHHcCCcc------------------------H----HHH
Confidence 6788899999999999998732 222211111 1 111
Q ss_pred cCCcceEEEEEeccCCCCCCHHHHHHHHHHHHHHHHHcC-CeEEEecCCCchhHHHHHHHHHhhc-CCCHHHHH
Q 021986 97 GKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTE-QLSSEGAL 168 (304)
Q Consensus 97 ~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AYLm~~~-~~s~~eAl 168 (304)
....++.++++||.|...+++.. +.++++.|...+++| +|+|||.+|.|||++|++++|+.-. .+++++|+
T Consensus 96 ~~~~Gi~~~h~PI~D~~aPd~~~-~~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 96 AQARGIAWHHLPIPDGSAPDFAA-AWQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHTT-EEEE----TTS---HHH-HHHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHcCCEEEecCccCCCCCCHHH-HHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 22346899999999999988765 556788888888888 9999999999999999999988754 58899886
No 14
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.37 E-value=2.3e-12 Score=110.88 Aligned_cols=139 Identities=9% Similarity=0.125 Sum_probs=80.4
Q ss_pred ccccCCeEecChHhHhcHHhhhcCCCeEEEEcccccccchhhhccccCCCCcccccccccCCCCCCCCCCCcCCCCCCcc
Q 021986 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (304)
Q Consensus 3 ~~I~p~LylG~~~~a~d~~~L~~~gIt~VInl~~~~~~~~~~~w~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~p~~ 82 (304)
..|.++||-|+...+.+...|+++|+++||+|..+.
T Consensus 8 ~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~-------------------------------------------- 43 (164)
T PF03162_consen 8 GMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEP-------------------------------------------- 43 (164)
T ss_dssp EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---------------------------------------------
T ss_pred cCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCC--------------------------------------------
Confidence 368999999999999999999999999999997521
Q ss_pred CCCCcchhhhhhhhcCCcceEEEEEeccCCCCC---CHHHHHHHHHHHHHHHHHcCCeEEEecCCCchhHHHHHHHHHhh
Q 021986 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESE---NLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRT 159 (304)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~i~~l~ipi~D~~~~---~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AYLm~~ 159 (304)
++.+. .......++...++++...... --.+.+.++++.|-+. ++.+|||||..|..|+++|+++|- +.
T Consensus 44 --~~~~~----~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~-~n~PvLiHC~~G~~rTG~vvg~lR-k~ 115 (164)
T PF03162_consen 44 --PSQDF----LEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDP-RNYPVLIHCNHGKDRTGLVVGCLR-KL 115 (164)
T ss_dssp ----HHH----HHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-G-GG-SEEEE-SSSSSHHHHHHHHHH-HH
T ss_pred --CCHHH----HHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCC-CCCCEEEEeCCCCcchhhHHHHHH-HH
Confidence 01110 0112234577788887654431 1223345555554322 245999999999999999999998 67
Q ss_pred cCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHc
Q 021986 160 EQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEM 194 (304)
Q Consensus 160 ~~~s~~eAl~~Vr~~Rp~i~pn~~f~~qL~~~e~~ 194 (304)
+||+...|++..+.--. ...+..-.+.++.|...
T Consensus 116 Q~W~~~~i~~Ey~~f~~-~~~~~~~~~fIe~f~~~ 149 (164)
T PF03162_consen 116 QGWSLSSIFDEYRRFAG-PKIRYLDEQFIELFDVE 149 (164)
T ss_dssp TTB-HHHHHHHHHHHHG-GG--HHHHHHHHT----
T ss_pred cCCCHHHHHHHHHHhcC-CCCcHHHHHHHHhcCcc
Confidence 89999999998876322 24455566666666643
No 15
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.37 E-value=6.8e-12 Score=104.55 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=85.7
Q ss_pred ccccCCeEecChHhHhcHHhhhcCCCeEEEEcccccccchhhhccccCCCCcccccccccCCCCCCCCCCCcCCCCCCcc
Q 021986 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (304)
Q Consensus 3 ~~I~p~LylG~~~~a~d~~~L~~~gIt~VInl~~~~~~~~~~~w~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~p~~ 82 (304)
.+|.+.+|+++.....+.+.|+++||++|||+.... +.
T Consensus 3 ~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~------------------------------------------E~ 40 (135)
T TIGR01244 3 RKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDR------------------------------------------EE 40 (135)
T ss_pred eEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCC------------------------------------------CC
Confidence 589999999999999999999999999999998621 00
Q ss_pred CCCCcchhhhhhhhcCCcceEEEEEeccCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEecCCCchhHHHHHHHHHhhcCC
Q 021986 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (304)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AYLm~~~~~ 162 (304)
...|.. ..+.......++.|+++|+..... + .+......++++. ..++||+||.+|. ||+++.+.++.. .|+
T Consensus 41 ~~~p~~--~~~~~~a~~~gl~y~~iPv~~~~~-~-~~~v~~f~~~~~~--~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~ 112 (135)
T TIGR01244 41 ESQPDF--AQIKAAAEAAGVTYHHQPVTAGDI-T-PDDVETFRAAIGA--AEGPVLAYCRSGT-RSSLLWGFRQAA-EGV 112 (135)
T ss_pred CCCCCH--HHHHHHHHHCCCeEEEeecCCCCC-C-HHHHHHHHHHHHh--CCCCEEEEcCCCh-HHHHHHHHHHHH-cCC
Confidence 011110 001111123468899999875432 1 1113333333332 2479999999999 998777666655 699
Q ss_pred CHHHHHHHHHHhCCCcc
Q 021986 163 SSEGALESLRQSCESVC 179 (304)
Q Consensus 163 s~~eAl~~Vr~~Rp~i~ 179 (304)
+.+++++..+..--.+.
T Consensus 113 ~~~~i~~~~~~~G~~~~ 129 (135)
T TIGR01244 113 PVEEIVRRAQAAGYDLS 129 (135)
T ss_pred CHHHHHHHHHHcCCCcc
Confidence 99999999987655443
No 16
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.25 E-value=9e-11 Score=96.24 Aligned_cols=90 Identities=22% Similarity=0.354 Sum_probs=66.4
Q ss_pred ceEEEEEeccCCCCCCHHHHHHHHHHHHHHHHH--cC-CeEEEecCCCchhHHHHHHHHHhhcCCCHHHHHHHHHHhCCC
Q 021986 101 KLVRMTVPIRDMESENLLDYLDVCFDFIDRRRK--EG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCES 177 (304)
Q Consensus 101 ~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~--~g-~VLVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~~Vr~~Rp~ 177 (304)
||..+..|..|...+. .+..++-.+.+....+ .| .|-|||.+|.||.+.+|+..|+.. ||.+++|++++|++|.
T Consensus 62 GI~Vldw~f~dg~ppp-~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlvalalie~-gmkyedave~ir~krr- 138 (173)
T KOG2836|consen 62 GITVLDWPFDDGAPPP-NQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVALALIEA-GMKYEDAVEMIRQKRR- 138 (173)
T ss_pred CceEeecccccCCCCc-hHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHHHHHHHc-cccHHHHHHHHHHHhh-
Confidence 4666667777754433 2223333443333333 35 899999999999999998888865 9999999999999998
Q ss_pred ccCCHHHHHHHHHHHH
Q 021986 178 VCPNDGFLEQLKMFEE 193 (304)
Q Consensus 178 i~pn~~f~~qL~~~e~ 193 (304)
-..|..++..|+.|..
T Consensus 139 ga~n~kql~~lekyrp 154 (173)
T KOG2836|consen 139 GAINSKQLLYLEKYRP 154 (173)
T ss_pred ccccHHHHHHHHHhCc
Confidence 5679988888888853
No 17
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.18 E-value=2.8e-10 Score=88.62 Aligned_cols=85 Identities=16% Similarity=0.189 Sum_probs=64.0
Q ss_pred EEEeccCCCCCCHHHHHHHHHHHHHHHHH----cCCeEEEecCCCchhHHHHHHHHHhhc------CCCHHHHHHHHHHh
Q 021986 105 MTVPIRDMESENLLDYLDVCFDFIDRRRK----EGGVLVHCFAGVSRSAAIITAYLMRTE------QLSSEGALESLRQS 174 (304)
Q Consensus 105 l~ipi~D~~~~~l~~~~~~~~~fI~~~~~----~g~VLVHC~aG~sRS~tvv~AYLm~~~------~~s~~eAl~~Vr~~ 174 (304)
.+....|...++....|.+.++.+++... +++|+|||.+|.|||++++++|++... ..++.+++..+|..
T Consensus 6 ~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 85 (105)
T smart00012 6 HYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRKQ 85 (105)
T ss_pred eeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Confidence 34445555544444556666666666654 469999999999999999999998753 36899999999999
Q ss_pred CCCccCCHHHHHHHH
Q 021986 175 CESVCPNDGFLEQLK 189 (304)
Q Consensus 175 Rp~i~pn~~f~~qL~ 189 (304)
||....+..+...+.
T Consensus 86 r~~~~~~~~q~~~~~ 100 (105)
T smart00012 86 RPGMVQTFEQYLFLY 100 (105)
T ss_pred hhhhCCcHHHHHHHH
Confidence 999888777666554
No 18
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.18 E-value=2.8e-10 Score=88.62 Aligned_cols=85 Identities=16% Similarity=0.189 Sum_probs=64.0
Q ss_pred EEEeccCCCCCCHHHHHHHHHHHHHHHHH----cCCeEEEecCCCchhHHHHHHHHHhhc------CCCHHHHHHHHHHh
Q 021986 105 MTVPIRDMESENLLDYLDVCFDFIDRRRK----EGGVLVHCFAGVSRSAAIITAYLMRTE------QLSSEGALESLRQS 174 (304)
Q Consensus 105 l~ipi~D~~~~~l~~~~~~~~~fI~~~~~----~g~VLVHC~aG~sRS~tvv~AYLm~~~------~~s~~eAl~~Vr~~ 174 (304)
.+....|...++....|.+.++.+++... +++|+|||.+|.|||++++++|++... ..++.+++..+|..
T Consensus 6 ~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 85 (105)
T smart00404 6 HYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRKQ 85 (105)
T ss_pred eeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Confidence 34445555544444556666666666654 469999999999999999999998753 36899999999999
Q ss_pred CCCccCCHHHHHHHH
Q 021986 175 CESVCPNDGFLEQLK 189 (304)
Q Consensus 175 Rp~i~pn~~f~~qL~ 189 (304)
||....+..+...+.
T Consensus 86 r~~~~~~~~q~~~~~ 100 (105)
T smart00404 86 RPGMVQTFEQYLFLY 100 (105)
T ss_pred hhhhCCcHHHHHHHH
Confidence 999888777666554
No 19
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.11 E-value=2.2e-10 Score=92.20 Aligned_cols=102 Identities=16% Similarity=0.241 Sum_probs=57.4
Q ss_pred ccccCCeEecChHhHhcHHhhhcCCCeEEEEcccccccchhhhccccCCCCcccccccccCCCCCCCCCCCcCCCCCCcc
Q 021986 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (304)
Q Consensus 3 ~~I~p~LylG~~~~a~d~~~L~~~gIt~VInl~~~~~~~~~~~w~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~p~~ 82 (304)
.+|.+.+|+++.....+++.|++.||++|||++... +.
T Consensus 3 ~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~------------------------------------------E~ 40 (110)
T PF04273_consen 3 RQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDG------------------------------------------EE 40 (110)
T ss_dssp EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TT------------------------------------------ST
T ss_pred EecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCC------------------------------------------CC
Confidence 479999999999999999999999999999997521 00
Q ss_pred CCCCcchhhhhhhhcCCcceEEEEEeccCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEecCCCchhHHHHH
Q 021986 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIIT 153 (304)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~ 153 (304)
...|. ...+.......|+.|.++|+..... . .+.+....+.++.. .++||+||..|. ||.++.+
T Consensus 41 ~~qp~--~~~~~~~a~~~Gl~y~~iPv~~~~~-~-~~~v~~f~~~l~~~--~~Pvl~hC~sG~-Ra~~l~~ 104 (110)
T PF04273_consen 41 PGQPS--SAEEAAAAEALGLQYVHIPVDGGAI-T-EEDVEAFADALESL--PKPVLAHCRSGT-RASALWA 104 (110)
T ss_dssp TT-T---HHCHHHHHHHCT-EEEE----TTT----HHHHHHHHHHHHTT--TTSEEEE-SCSH-HHHHHHH
T ss_pred CCCCC--HHHHHHHHHHcCCeEEEeecCCCCC-C-HHHHHHHHHHHHhC--CCCEEEECCCCh-hHHHHHH
Confidence 00111 1123444556789999999986432 1 22233333333321 469999999997 9876544
No 20
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.94 E-value=8e-09 Score=86.55 Aligned_cols=71 Identities=27% Similarity=0.371 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEEEecCCCchhHHHH-HHHHHhhcCCCHHHHHHHHHHhCCCccCCHHHHHH
Q 021986 117 LLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAII-TAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQ 187 (304)
Q Consensus 117 l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv-~AYLm~~~~~s~~eAl~~Vr~~Rp~i~pn~~f~~q 187 (304)
-..|.+.+++|+++.-+..++||||.+|+|||.+++ +|.|.....++-.+..+.+|..+|.+.||+..+.-
T Consensus 76 ~e~Hv~~i~DF~~~wp~~apllIHC~aGISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~RliaI 147 (172)
T COG5350 76 GEAHVRAIIDFADEWPRFAPLLIHCYAGISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIAI 147 (172)
T ss_pred CHHHHHHHHHHHhcCccccceeeeeccccccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHHH
Confidence 356899999999988777799999999999997643 33455567899999999999999999999976643
No 21
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.90 E-value=1e-08 Score=92.16 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=65.1
Q ss_pred ceEEEEEe-ccCCCCCCHHHHHHHHHHHHHHHHH---cCCeEEEecCCCchhHHHHHHHHHhh-----cCCCHHHHHHHH
Q 021986 101 KLVRMTVP-IRDMESENLLDYLDVCFDFIDRRRK---EGGVLVHCFAGVSRSAAIITAYLMRT-----EQLSSEGALESL 171 (304)
Q Consensus 101 ~i~~l~ip-i~D~~~~~l~~~~~~~~~fI~~~~~---~g~VLVHC~aG~sRS~tvv~AYLm~~-----~~~s~~eAl~~V 171 (304)
.+.++++. ..|...++-...+.+.+..+++... .++|+|||.+|+|||+++++++++.. ..+++.+++..+
T Consensus 129 ~V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~i 208 (231)
T cd00047 129 TVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKEL 208 (231)
T ss_pred EEEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 45555443 3344434433446666666665543 45999999999999999999998654 368999999999
Q ss_pred HHhCCCccCCHHHHHHHH
Q 021986 172 RQSCESVCPNDGFLEQLK 189 (304)
Q Consensus 172 r~~Rp~i~pn~~f~~qL~ 189 (304)
|+.|+.+..+..+...+.
T Consensus 209 R~~R~~~v~~~~Qy~f~~ 226 (231)
T cd00047 209 RSQRPGMVQTEEQYIFLY 226 (231)
T ss_pred HhccccccCCHHHHHHHH
Confidence 999999888887776654
No 22
>PLN02727 NAD kinase
Probab=98.86 E-value=1.1e-08 Score=106.60 Aligned_cols=109 Identities=8% Similarity=0.094 Sum_probs=79.1
Q ss_pred CeEecChHhHhcHHhhhcCCCeEEEEcccccccchhhhccccCCCCcccccccccCCCCCCCCCCCcCCCCCCccCCCCc
Q 021986 8 HLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRSCLSPT 87 (304)
Q Consensus 8 ~LylG~~~~a~d~~~L~~~gIt~VInl~~~~~~~~~~~w~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~p~~~~~~~ 87 (304)
.+|.++...+.++++|.++||++|||+..+. +...+
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~-------------------------------------------E~~q~- 297 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEI-------------------------------------------VKDNF- 297 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCC-------------------------------------------cCCCc-
Confidence 4899999999999999999999999997621 00000
Q ss_pred chhhhhhhhcCCcceEEEEEeccCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEecCCCchhHHHHHHHHHhhcCCC
Q 021986 88 KLLYSLEYAGKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (304)
Q Consensus 88 ~~~~~~~~~~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AYLm~~~~~s 163 (304)
....++.+....++.|++||+.+.......+ +.++.+++++. ...+||+||..|..|+++++++|+.+.-+..
T Consensus 298 -~~~ee~eAae~~GL~yVhIPVs~~~apt~Eq-Ve~fa~~l~~s-lpkPVLvHCKSGarRAGamvA~yl~~~~~~~ 370 (986)
T PLN02727 298 -YQAAVDDAISSGKIEVVKIPVEVRTAPSAEQ-VEKFASLVSDS-SKKPIYLHSKEGVWRTSAMVSRWKQYMTRSA 370 (986)
T ss_pred -hhHHHHHHHHHcCCeEEEeecCCCCCCCHHH-HHHHHHHHHhh-cCCCEEEECCCCCchHHHHHHHHHHHHcccc
Confidence 1112344455568999999997755544333 55555555332 2569999999999999999999999876654
No 23
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.81 E-value=2.6e-08 Score=91.13 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=59.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH--cCCeEEEecCCCchhHHHHHHHHHhh-----cCCCHHHHHHHHHHhCCCccCCHH
Q 021986 111 DMESENLLDYLDVCFDFIDRRRK--EGGVLVHCFAGVSRSAAIITAYLMRT-----EQLSSEGALESLRQSCESVCPNDG 183 (304)
Q Consensus 111 D~~~~~l~~~~~~~~~fI~~~~~--~g~VLVHC~aG~sRS~tvv~AYLm~~-----~~~s~~eAl~~Vr~~Rp~i~pn~~ 183 (304)
|...+.-...+.+.+..++.... .|+|+|||.+|+|||+++++++++.. ..+++.+++..+|+.|+.+..+..
T Consensus 168 d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~~~~ 247 (258)
T smart00194 168 DHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQTEE 247 (258)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccCCHH
Confidence 43333223445555555555544 46999999999999999999998743 468999999999999999998888
Q ss_pred HHHHHH
Q 021986 184 FLEQLK 189 (304)
Q Consensus 184 f~~qL~ 189 (304)
+...+.
T Consensus 248 Qy~f~~ 253 (258)
T smart00194 248 QYIFLY 253 (258)
T ss_pred HHHHHH
Confidence 877654
No 24
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.72 E-value=1.2e-07 Score=76.55 Aligned_cols=121 Identities=16% Similarity=0.167 Sum_probs=81.1
Q ss_pred ccccCCeEecChHhHhcHHhhhcCCCeEEEEcccccccchhhhccccCCCCcccccccccCCCCCCCCCCCcCCCCCCcc
Q 021986 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (304)
Q Consensus 3 ~~I~p~LylG~~~~a~d~~~L~~~gIt~VInl~~~~~~~~~~~w~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~p~~ 82 (304)
.+|.+.|+|++.....|+..++..|++.|||-.... ++
T Consensus 4 ~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDg------------------------------------------Ee 41 (130)
T COG3453 4 RRINDRLSVSGQISPADIASIAALGFKSIICNRPDG------------------------------------------EE 41 (130)
T ss_pred eecccceeecCCCCHHHHHHHHHhccceecccCCCC------------------------------------------CC
Confidence 478999999999999999999999999999997521 01
Q ss_pred CCCCcchhhhhhhhcCCcceEEEEEeccCCC-CCCHHHHHHHHHHHHHHHHHcCCeEEEecCCCchhHHHHHHHHHhhcC
Q 021986 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDME-SENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQ 161 (304)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~i~~l~ipi~D~~-~~~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AYLm~~~~ 161 (304)
...|. .-.+.......++.|.+||+.-.. .++-.+.|.++++. .+|+||.||+.|- ||.++ .+.--...|
T Consensus 42 ~~QP~--~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~e-----aegPVlayCrsGt-Rs~~l-y~~~~~~~g 112 (130)
T COG3453 42 PGQPG--FAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALDE-----AEGPVLAYCRSGT-RSLNL-YGLGELDGG 112 (130)
T ss_pred CCCCC--hHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHHH-----hCCCEEeeecCCc-hHHHH-HHHHHHhcC
Confidence 11222 113445556668889999997633 22222223333332 2689999999995 88443 222225679
Q ss_pred CCHHHHHHHHHHh
Q 021986 162 LSSEGALESLRQS 174 (304)
Q Consensus 162 ~s~~eAl~~Vr~~ 174 (304)
|+.++..++-+..
T Consensus 113 m~~de~~a~g~a~ 125 (130)
T COG3453 113 MSRDEIEALGQAA 125 (130)
T ss_pred CCHHHHHHHHHhh
Confidence 9998887765543
No 25
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.46 E-value=1.4e-06 Score=74.51 Aligned_cols=34 Identities=29% Similarity=0.530 Sum_probs=22.2
Q ss_pred CCeEEEecCCCchhHHHHHHHHHhhcCCCHHHHHH
Q 021986 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALE 169 (304)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~ 169 (304)
++||+||.+|+.|++.+++. |+...|.+.++.++
T Consensus 125 ~p~l~HC~aGKDRTG~~~al-ll~~lGV~~~~I~~ 158 (164)
T PF13350_consen 125 GPVLFHCTAGKDRTGVVAAL-LLSLLGVPDEDIIA 158 (164)
T ss_dssp --EEEE-SSSSSHHHHHHHH-HHHHTT--HHHHHH
T ss_pred CcEEEECCCCCccHHHHHHH-HHHHcCCCHHHHHH
Confidence 69999999999999766555 45556998777654
No 26
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.39 E-value=2e-06 Score=85.06 Aligned_cols=93 Identities=18% Similarity=0.282 Sum_probs=65.5
Q ss_pred eEEEEEec-cCCCCCCHHHHHHHHHHHHHHHHHc----------CCeEEEecCCCchhHHHHHHHHHhhcC-CCHHHHHH
Q 021986 102 LVRMTVPI-RDMESENLLDYLDVCFDFIDRRRKE----------GGVLVHCFAGVSRSAAIITAYLMRTEQ-LSSEGALE 169 (304)
Q Consensus 102 i~~l~ipi-~D~~~~~l~~~~~~~~~fI~~~~~~----------g~VLVHC~aG~sRS~tvv~AYLm~~~~-~s~~eAl~ 169 (304)
+.++|+.- .|...++-...+...++.++...+. +..+|||.||+|||++++++|+|...+ .++++.+.
T Consensus 423 V~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~ 502 (535)
T PRK15375 423 IPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRA 502 (535)
T ss_pred EEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHH
Confidence 45555533 4433333333355555555544221 235799999999999999999997544 67999999
Q ss_pred HHHHhCCC-ccCCHHHHHHHHHHHHc
Q 021986 170 SLRQSCES-VCPNDGFLEQLKMFEEM 194 (304)
Q Consensus 170 ~Vr~~Rp~-i~pn~~f~~qL~~~e~~ 194 (304)
-+|..|+. +.-+..++..|...+..
T Consensus 503 dlR~qRng~MVQt~eQy~~l~~~~~~ 528 (535)
T PRK15375 503 DFRNSRNNRMLEDASQFVQLKAMQAQ 528 (535)
T ss_pred HHHhcCCccccccHHHHHHHHHHHHH
Confidence 99999997 77788888888877654
No 27
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.35 E-value=2.8e-06 Score=80.07 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=44.2
Q ss_pred CCeEEEecCCCchhHHHHHHHHHh-----hcCCCHHHHHHHHHHhCCCccCCHHHHHH
Q 021986 135 GGVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGALESLRQSCESVCPNDGFLEQ 187 (304)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~-----~~~~s~~eAl~~Vr~~Rp~i~pn~~f~~q 187 (304)
|+|+|||.+|+|||+++++...+. ....++.+++..+|+.|+....+..+...
T Consensus 230 ~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F 287 (303)
T PHA02742 230 PPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQYIF 287 (303)
T ss_pred CCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccccCCHHHHHH
Confidence 699999999999999998887654 23567899999999999988887766544
No 28
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.34 E-value=2.7e-06 Score=75.61 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHH--HcCCeEEEecCCCchhHHHHHHHHHhh-----cCCCHHHHHHHHHHhCCCccCCHHHHHHHHH
Q 021986 121 LDVCFDFIDRRR--KEGGVLVHCFAGVSRSAAIITAYLMRT-----EQLSSEGALESLRQSCESVCPNDGFLEQLKM 190 (304)
Q Consensus 121 ~~~~~~fI~~~~--~~g~VLVHC~aG~sRS~tvv~AYLm~~-----~~~s~~eAl~~Vr~~Rp~i~pn~~f~~qL~~ 190 (304)
+-+.++.+.+.. ..++|+|||.+|.|||++++++.+|.. ...++.+++..+|+.|+.+..+..++..+..
T Consensus 155 ~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~~~qy~f~~~ 231 (235)
T PF00102_consen 155 FLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQSPEQYRFCYM 231 (235)
T ss_dssp HHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSSHHHHHHHHH
T ss_pred hhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccCCHHHHHHHHH
Confidence 444555555554 235999999999999999999988753 3578999999999999999999887766643
No 29
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=98.26 E-value=3.1e-06 Score=83.16 Aligned_cols=89 Identities=22% Similarity=0.241 Sum_probs=73.1
Q ss_pred EEEeccCCCCCCHHHHHHHHHHHHHHHHHc---CCeEEEecCCCchhHHHHHHHHHhhcCCC-HHHHHHHHHHhC---C-
Q 021986 105 MTVPIRDMESENLLDYLDVCFDFIDRRRKE---GGVLVHCFAGVSRSAAIITAYLMRTEQLS-SEGALESLRQSC---E- 176 (304)
Q Consensus 105 l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~---g~VLVHC~aG~sRS~tvv~AYLm~~~~~s-~~eAl~~Vr~~R---p- 176 (304)
..++..|...+.+.. +..+++-++..+.. ..|.|||.+|.+|++++++||||+..-.. .++|+.+.-.+| .
T Consensus 76 ~~~~~~Dh~~P~L~~-l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~ 154 (434)
T KOG2283|consen 76 ARFGFDDHNPPPLEL-LCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGK 154 (434)
T ss_pred eecCCCCCCCCcHHH-HHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccc
Confidence 447888877777665 88888889988875 37999999999999999999999987665 999999999988 3
Q ss_pred -CccCCHHHHHHHHHHHHc
Q 021986 177 -SVCPNDGFLEQLKMFEEM 194 (304)
Q Consensus 177 -~i~pn~~f~~qL~~~e~~ 194 (304)
...-.+.+.+.+.-|+.+
T Consensus 155 ~~~~~~PSq~RYv~Y~~~~ 173 (434)
T KOG2283|consen 155 SKGVTIPSQRRYVGYFSRV 173 (434)
T ss_pred cCCccCchhhHHHHHHHHH
Confidence 234566788888888885
No 30
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.26 E-value=6.3e-06 Score=77.55 Aligned_cols=53 Identities=23% Similarity=0.215 Sum_probs=44.7
Q ss_pred CCeEEEecCCCchhHHHHHHHHHh-----hcCCCHHHHHHHHHHhCCCccCCHHHHHH
Q 021986 135 GGVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGALESLRQSCESVCPNDGFLEQ 187 (304)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~-----~~~~s~~eAl~~Vr~~Rp~i~pn~~f~~q 187 (304)
|+|+|||.+|+|||+++++...+. ....++.+++..+|+.|+....+..+...
T Consensus 222 ~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~Vqt~~QY~F 279 (298)
T PHA02740 222 APIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLDDYVF 279 (298)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCccccCCHHHHHH
Confidence 599999999999999998887654 34678999999999999988887766544
No 31
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.25 E-value=6.8e-06 Score=77.77 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=46.2
Q ss_pred CCeEEEecCCCchhHHHHHHHHHh-----hcCCCHHHHHHHHHHhCCCccCCHHHHHHH
Q 021986 135 GGVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGALESLRQSCESVCPNDGFLEQL 188 (304)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~-----~~~~s~~eAl~~Vr~~Rp~i~pn~~f~~qL 188 (304)
|+|+|||.+|+|||+++++..++. ....+..+++..+|+.|+....+..+...+
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFI 288 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 699999999999999999887543 346789999999999999998888776665
No 32
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.22 E-value=1.5e-06 Score=73.53 Aligned_cols=60 Identities=20% Similarity=0.364 Sum_probs=44.3
Q ss_pred cCCcceEEEEEeccCCCCCCHHHHHHHHHHHHHHHHHcC-CeEEEecCCCchhHHHHHHHHHh
Q 021986 97 GKDLKLVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMR 158 (304)
Q Consensus 97 ~~~~~i~~l~ipi~D~~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AYLm~ 158 (304)
....++.|++||+.|...++- +.|++.++|+... ..+ .+.+||++|.||+.+..+.|.|.
T Consensus 88 ~~~~g~~Y~Ripitd~~~P~~-~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 88 VEGNGLRYYRIPITDHQAPDP-EDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHHTT-EEEEEEE-TTS---H-HHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred HhcCCceEEEEeCCCcCCCCH-HHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 445689999999999866554 4499999999888 445 89999999999999988887664
No 33
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.21 E-value=1e-05 Score=77.00 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=45.7
Q ss_pred CCeEEEecCCCchhHHHHHHHHHh-----hcCCCHHHHHHHHHHhCCCccCCHHHHHHHH
Q 021986 135 GGVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGALESLRQSCESVCPNDGFLEQLK 189 (304)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~-----~~~~s~~eAl~~Vr~~Rp~i~pn~~f~~qL~ 189 (304)
|+|+|||.+|+|||+++++...+. ...+++.+++..+|..|+....+..+...+.
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~~QY~F~y 307 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYAFCY 307 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccCCCHHHHHHHH
Confidence 699999999999999998876543 3467899999999999999888876665543
No 34
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=98.17 E-value=1.1e-05 Score=72.48 Aligned_cols=118 Identities=12% Similarity=0.210 Sum_probs=83.2
Q ss_pred ccccCCeEecChHhHhcHHhhhcCCCeEEEEcccccccchhhhccccCCCCcccccccccCCCCCCCCCCCcCCCCCCcc
Q 021986 3 YLVREHLFIGNISDAADILQNGSSEITHMLSVLSSASISFFTEWRSSLTIPSKEIKKVYAGGSGDGGSGSVDDLGDGSRS 82 (304)
Q Consensus 3 ~~I~p~LylG~~~~a~d~~~L~~~gIt~VInl~~~~~~~~~~~w~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~p~~ 82 (304)
+-|.++||-+++....+...|+.++.+.||.++.+.
T Consensus 61 s~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~-------------------------------------------- 96 (249)
T KOG1572|consen 61 SMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEP-------------------------------------------- 96 (249)
T ss_pred cccccceeecCCCCccchHHHHHhhhheEEEecCCC--------------------------------------------
Confidence 357889999999999999999999999999997621
Q ss_pred CCCCcchhhhhhhhcCCcceEEEEEeccCCC------CCCHHH-HHHHHHHHHHHHHH-cC-CeEEEecCCCchhHHHHH
Q 021986 83 CLSPTKLLYSLEYAGKDLKLVRMTVPIRDME------SENLLD-YLDVCFDFIDRRRK-EG-GVLVHCFAGVSRSAAIIT 153 (304)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~i~~l~ipi~D~~------~~~l~~-~~~~~~~fI~~~~~-~g-~VLVHC~aG~sRS~tvv~ 153 (304)
.+..++.| .+..+|++.+|-+.... ..++.+ .+..++.++ +. .+ ++||||..|..|++++|.
T Consensus 97 -yp~~nl~f-----~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~~l---ld~~N~P~Lihc~rGkhRtg~lVg 167 (249)
T KOG1572|consen 97 -YPEENLNF-----LESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALKVL---LDKRNYPILIHCKRGKHRTGCLVG 167 (249)
T ss_pred -CChHHHHH-----HHhcCceEEEEecccccccccCCCCCChHHHHHHHHHHH---hcccCCceEEecCCCCcchhhhHH
Confidence 22222222 23345777777775433 233333 355555552 33 34 999999999999999988
Q ss_pred HHHHhhcCCCHHHHHHHHHHh
Q 021986 154 AYLMRTEQLSSEGALESLRQS 174 (304)
Q Consensus 154 AYLm~~~~~s~~eAl~~Vr~~ 174 (304)
+.- +.++|++.-.++.-+..
T Consensus 168 clR-klq~W~lssil~Ey~~f 187 (249)
T KOG1572|consen 168 CLR-KLQNWSLSSILDEYLRF 187 (249)
T ss_pred HHH-HHhccchhHHHHHHHHh
Confidence 865 66789988877755543
No 35
>PHA02738 hypothetical protein; Provisional
Probab=98.08 E-value=2.6e-05 Score=74.08 Aligned_cols=54 Identities=17% Similarity=0.084 Sum_probs=44.7
Q ss_pred CCeEEEecCCCchhHHHHHHHHHh-----hcCCCHHHHHHHHHHhCCCccCCHHHHHHH
Q 021986 135 GGVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGALESLRQSCESVCPNDGFLEQL 188 (304)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~-----~~~~s~~eAl~~Vr~~Rp~i~pn~~f~~qL 188 (304)
|+|+|||.+|+|||+++++..++. ....++.+++..+|+.|+....+..+...+
T Consensus 228 ~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY~F~ 286 (320)
T PHA02738 228 PPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFFC 286 (320)
T ss_pred CCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHHHHH
Confidence 589999999999999988777543 346789999999999999988887776543
No 36
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=97.94 E-value=8.3e-05 Score=73.55 Aligned_cols=90 Identities=21% Similarity=0.250 Sum_probs=73.5
Q ss_pred eEEEEEeccC--CCCCCHHHHHHHHHHHHHHHHHc--C-CeEEEecCCCchhHHHHHHHHHhhcCC--------------
Q 021986 102 LVRMTVPIRD--MESENLLDYLDVCFDFIDRRRKE--G-GVLVHCFAGVSRSAAIITAYLMRTEQL-------------- 162 (304)
Q Consensus 102 i~~l~ipi~D--~~~~~l~~~~~~~~~fI~~~~~~--g-~VLVHC~aG~sRS~tvv~AYLm~~~~~-------------- 162 (304)
..++++++.. ....++...+++++.|+...+.+ + +|||||..|...|+.+++|.|+..++.
T Consensus 339 ~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~it 418 (451)
T PF04179_consen 339 PKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSIT 418 (451)
T ss_pred ceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCC
Confidence 3456666654 34557888899999999999877 5 899999999999999999999986543
Q ss_pred --CHHHHHHHHHHhCCCccCCHHHHHHHHHH
Q 021986 163 --SSEGALESLRQSCESVCPNDGFLEQLKMF 191 (304)
Q Consensus 163 --s~~eAl~~Vr~~Rp~i~pn~~f~~qL~~~ 191 (304)
....-+.+|.+.+|.+.|+.+.++++..|
T Consensus 419 K~~IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 419 KDDIRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 23456888899999999999999998876
No 37
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=97.78 E-value=7.3e-05 Score=78.86 Aligned_cols=81 Identities=15% Similarity=0.180 Sum_probs=61.0
Q ss_pred eccCCCCCCHHHHHHHHHHHHHHHHHc-C-CeEEEecCCCchhHHHHHHHHHh-----hcCCCHHHHHHHHHHhCCCccC
Q 021986 108 PIRDMESENLLDYLDVCFDFIDRRRKE-G-GVLVHCFAGVSRSAAIITAYLMR-----TEQLSSEGALESLRQSCESVCP 180 (304)
Q Consensus 108 pi~D~~~~~l~~~~~~~~~fI~~~~~~-g-~VLVHC~aG~sRS~tvv~AYLm~-----~~~~s~~eAl~~Vr~~Rp~i~p 180 (304)
...|...++-.++|-+.++.|+..+.. + +|+|||.||+|||++++++=+|. ...+.+-+.++.+|..|-.+.+
T Consensus 1035 aWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQ 1114 (1144)
T KOG0792|consen 1035 AWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQ 1114 (1144)
T ss_pred ccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcc
Confidence 345555555556676666666666655 6 99999999999999987665443 2367899999999999999988
Q ss_pred CHHHHHHH
Q 021986 181 NDGFLEQL 188 (304)
Q Consensus 181 n~~f~~qL 188 (304)
+..+.+..
T Consensus 1115 T~~QYkFV 1122 (1144)
T KOG0792|consen 1115 TLSQYKFV 1122 (1144)
T ss_pred chHHhhHH
Confidence 88876553
No 38
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=97.69 E-value=0.00019 Score=65.79 Aligned_cols=63 Identities=22% Similarity=0.217 Sum_probs=46.8
Q ss_pred CCeEEEecCCCchhHHHHHHHHHhhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHcCCC
Q 021986 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGFK 197 (304)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~~Vr~~Rp~i~pn~~f~~qL~~~e~~~~~ 197 (304)
++||+||.+|..|++.+++.|++...++.-..+-++++..++......+-..+....+.-++.
T Consensus 137 ~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (249)
T COG2365 137 GPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERRGILEYVSEKLLDDLE 199 (249)
T ss_pred CCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhHHHHHHHhhccccchh
Confidence 799999999999999999999998866667788888888887655555333444444333333
No 39
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.66 E-value=7.8e-05 Score=68.12 Aligned_cols=86 Identities=21% Similarity=0.267 Sum_probs=53.5
Q ss_pred ceEEEEEe-ccCCCCCCHHHHHHHHHHHHHHHH----HcCCeEEEecCCCchhHHHHHHHHH-hhcCCC-----------
Q 021986 101 KLVRMTVP-IRDMESENLLDYLDVCFDFIDRRR----KEGGVLVHCFAGVSRSAAIITAYLM-RTEQLS----------- 163 (304)
Q Consensus 101 ~i~~l~ip-i~D~~~~~l~~~~~~~~~fI~~~~----~~g~VLVHC~aG~sRS~tvv~AYLm-~~~~~s----------- 163 (304)
.+.|++.+ ..|...+++. ...++++... ..|+++|||.||+||++|+++.-.+ +...-+
T Consensus 184 ~Ihhf~y~nW~D~~~p~i~----sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~ 259 (302)
T COG5599 184 KIHHFQYINWVDFNVPDIR----SLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQ 259 (302)
T ss_pred EEEEEEecCccccCCcCHH----HHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhh
Confidence 45555544 3465555544 4555665554 3469999999999999998776644 322111
Q ss_pred --HHHHHHHHHHhCCCccCCHHHHHHHHH
Q 021986 164 --SEGALESLRQSCESVCPNDGFLEQLKM 190 (304)
Q Consensus 164 --~~eAl~~Vr~~Rp~i~pn~~f~~qL~~ 190 (304)
..+.+..+|++|-...-|..+...|..
T Consensus 260 D~if~iV~~LRsQRmkmVQn~~Qf~flY~ 288 (302)
T COG5599 260 DLIFQIVLSLRSQRMKMVQNKTQFKFLYD 288 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344566778888766666655555543
No 40
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=97.33 E-value=0.0003 Score=68.01 Aligned_cols=98 Identities=18% Similarity=0.250 Sum_probs=70.7
Q ss_pred CcceEEEEEeccCC---CCCCHHHHHHHHH-HHHHHHHHcC-CeEEEecCCCchhHHHHHHHHHhhcCCCHHHHHHHHHH
Q 021986 99 DLKLVRMTVPIRDM---ESENLLDYLDVCF-DFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQ 173 (304)
Q Consensus 99 ~~~i~~l~ipi~D~---~~~~l~~~~~~~~-~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~~Vr~ 173 (304)
..++.|+.+..... +.......|..++ .|.+.....+ -|+|||.+|.+|++-++++|||...+|+..+|++.+..
T Consensus 84 ~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~ 163 (393)
T KOG2386|consen 84 ERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFAD 163 (393)
T ss_pred ccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHHH
Confidence 34566666654332 2233333343333 3444444455 69999999999999999999999999999999999999
Q ss_pred hCCCccCCHHHHHHHHHHHHcCC
Q 021986 174 SCESVCPNDGFLEQLKMFEEMGF 196 (304)
Q Consensus 174 ~Rp~i~pn~~f~~qL~~~e~~~~ 196 (304)
.||...-....+..|...+..-.
T Consensus 164 ~r~~gi~k~dyi~~L~~~~~~~~ 186 (393)
T KOG2386|consen 164 ARPPGIEKQDYIDALYSRYHDIF 186 (393)
T ss_pred hCCCccCchHHHHHHhhcccccc
Confidence 99977777778888887765433
No 41
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=97.15 E-value=0.00034 Score=68.00 Aligned_cols=56 Identities=20% Similarity=0.471 Sum_probs=42.9
Q ss_pred HcCCeEEEecCCCchhHHHHHH-HHH---hhcC----CCHHHHHHHHHHhCCCccCCHHHHHHH
Q 021986 133 KEGGVLVHCFAGVSRSAAIITA-YLM---RTEQ----LSSEGALESLRQSCESVCPNDGFLEQL 188 (304)
Q Consensus 133 ~~g~VLVHC~aG~sRS~tvv~A-YLm---~~~~----~s~~eAl~~Vr~~Rp~i~pn~~f~~qL 188 (304)
+.|+|.|||.||+||++|+++. .|| +..| ++....+++||+.|....-...+.+.+
T Consensus 450 ~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYkFi 513 (600)
T KOG0790|consen 450 DAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFI 513 (600)
T ss_pred ccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHHHH
Confidence 4689999999999999996543 343 2334 578999999999999877776665554
No 42
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.10 E-value=0.0018 Score=62.93 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=40.2
Q ss_pred cCCeEEEecCCCchhHHHHHHHH-Hhh--c---CCCHHHHHHHHHHhCCCccCCHHHHH
Q 021986 134 EGGVLVHCFAGVSRSAAIITAYL-MRT--E---QLSSEGALESLRQSCESVCPNDGFLE 186 (304)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AYL-m~~--~---~~s~~eAl~~Vr~~Rp~i~pn~~f~~ 186 (304)
.+++.|||.+|+||++|+++... +.. . .....+.+..+|..|+.+..+..|..
T Consensus 299 ~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy~ 357 (415)
T KOG0789|consen 299 QEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQYL 357 (415)
T ss_pred CCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhHHH
Confidence 36999999999999999986552 222 1 23488888899999998777666553
No 43
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=97.00 E-value=0.0022 Score=61.18 Aligned_cols=57 Identities=25% Similarity=0.363 Sum_probs=44.2
Q ss_pred cCCeEEEecCCCchhHHHHHHH-HHhhc----CCCHHHHHHHHHHhCCCccCCHHHHHHHHH
Q 021986 134 EGGVLVHCFAGVSRSAAIITAY-LMRTE----QLSSEGALESLRQSCESVCPNDGFLEQLKM 190 (304)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AY-Lm~~~----~~s~~eAl~~Vr~~Rp~i~pn~~f~~qL~~ 190 (304)
.++++|||.||++|++|+++.- |++.. -.+.-..+..+|..|+...+|..++-.|..
T Consensus 287 ~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R~~mVqte~Qyvfl~~ 348 (374)
T KOG0791|consen 287 KGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSARMLMVQTEDQYVFLHQ 348 (374)
T ss_pred CCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhccccccchHHHHHHHHH
Confidence 4599999999999999988776 44432 234666777789999999999888777654
No 44
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=95.52 E-value=0.028 Score=57.76 Aligned_cols=50 Identities=20% Similarity=0.405 Sum_probs=37.6
Q ss_pred CeEEEecCCCchhHHHHHHHHHh------hcCCCHHHHHHHHHHhCCCccCCHHHH
Q 021986 136 GVLVHCFAGVSRSAAIITAYLMR------TEQLSSEGALESLRQSCESVCPNDGFL 185 (304)
Q Consensus 136 ~VLVHC~aG~sRS~tvv~AYLm~------~~~~s~~eAl~~Vr~~Rp~i~pn~~f~ 185 (304)
+|+|||..|.||+++-++.-++. .+.++....++++|..||.+.-...+.
T Consensus 929 pIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR~GmVaTkdQF 984 (1004)
T KOG0793|consen 929 PIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQRPGMVATKDQF 984 (1004)
T ss_pred ceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcCCcceeehhhh
Confidence 89999999999999865544332 125678889999999999765544433
No 45
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=95.30 E-value=0.065 Score=45.02 Aligned_cols=66 Identities=23% Similarity=0.206 Sum_probs=42.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHc----CCeEEEecCCCch----hHHHHHHHHHhhcCCCHHHHHHHHHHhCC
Q 021986 110 RDMESENLLDYLDVCFDFIDRRRKE----GGVLVHCFAGVSR----SAAIITAYLMRTEQLSSEGALESLRQSCE 176 (304)
Q Consensus 110 ~D~~~~~l~~~~~~~~~fI~~~~~~----g~VLVHC~aG~sR----S~tvv~AYLm~~~~~s~~eAl~~Vr~~Rp 176 (304)
.|..+-++.. +-+.+..+++.++. ++.+|||...-.+ ++.++.||+|...+||+++|++-+...-|
T Consensus 39 ~DFGPlnL~~-lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p 112 (141)
T PF14671_consen 39 ADFGPLNLAQ-LYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQP 112 (141)
T ss_dssp S------HHH-HHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT-
T ss_pred CcCCCccHHH-HHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCC
Confidence 5666666655 66666777777764 6999999865433 47799999999999999999999987754
No 46
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=94.96 E-value=0.025 Score=60.68 Aligned_cols=67 Identities=22% Similarity=0.380 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHH-----cCCeEEEecCCCchhHHHHHHHHH-----hhcCCCHHHHHHHHHHhCCCccCCHHHH
Q 021986 119 DYLDVCFDFIDRRRK-----EGGVLVHCFAGVSRSAAIITAYLM-----RTEQLSSEGALESLRQSCESVCPNDGFL 185 (304)
Q Consensus 119 ~~~~~~~~fI~~~~~-----~g~VLVHC~aG~sRS~tvv~AYLm-----~~~~~s~~eAl~~Vr~~Rp~i~pn~~f~ 185 (304)
.+--..+.|+++... .|++.|||.||+|||+++++.=-| .....+.-+-+..+|..|+...-...+.
T Consensus 710 e~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~mVQt~eQY 786 (1087)
T KOG4228|consen 710 ETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNMVQTEEQY 786 (1087)
T ss_pred ccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccccccHHHH
Confidence 333456667766543 589999999999999996543333 3445677777888888888765554443
No 47
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=94.10 E-value=0.092 Score=56.56 Aligned_cols=54 Identities=17% Similarity=0.351 Sum_probs=41.2
Q ss_pred cCCeEEEecCCCchhHHHHHHHHHhh-----cCCCHHHHHHHHHHhCCCccCCHHHHHH
Q 021986 134 EGGVLVHCFAGVSRSAAIITAYLMRT-----EQLSSEGALESLRQSCESVCPNDGFLEQ 187 (304)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AYLm~~-----~~~s~~eAl~~Vr~~Rp~i~pn~~f~~q 187 (304)
.+++.|||.+|.+||++++++-++.. .-++.-.+++.+|..||...-...+.+.
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~mv~t~~QY~f 1076 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGMVDTSDQYQF 1076 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccccCcHHHHHH
Confidence 56999999999999999887776542 2457788999999999976555444433
No 48
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.96 E-value=0.92 Score=46.20 Aligned_cols=32 Identities=34% Similarity=0.578 Sum_probs=22.5
Q ss_pred HHHHHHHc-C-CeEEEecCCCchhHHHHH-HHHHh
Q 021986 127 FIDRRRKE-G-GVLVHCFAGVSRSAAIIT-AYLMR 158 (304)
Q Consensus 127 fI~~~~~~-g-~VLVHC~aG~sRS~tvv~-AYLm~ 158 (304)
.|....+. + .|||||..|..|++-+++ |-||.
T Consensus 365 ~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~LlL 399 (717)
T KOG4471|consen 365 RIADKVESESRSVLVHCSDGWDRTAQLVSLAMLLL 399 (717)
T ss_pred HHHHHHhcCCceEEEEcCCCccchHHHHHHHHHHh
Confidence 34444444 4 899999999999988654 44553
No 49
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=77.77 E-value=4.8 Score=38.88 Aligned_cols=21 Identities=43% Similarity=0.800 Sum_probs=16.2
Q ss_pred HcC-CeEEEecCCCchhHHHHH
Q 021986 133 KEG-GVLVHCFAGVSRSAAIIT 153 (304)
Q Consensus 133 ~~g-~VLVHC~aG~sRS~tvv~ 153 (304)
.+| .|||||..|..|++-++.
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~s 250 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSS 250 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHH
Confidence 356 899999999999965443
No 50
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=77.40 E-value=3.6 Score=42.03 Aligned_cols=30 Identities=33% Similarity=0.509 Sum_probs=22.0
Q ss_pred HHHHHHHHHH-cC-CeEEEecCCCchhHHHHH
Q 021986 124 CFDFIDRRRK-EG-GVLVHCFAGVSRSAAIIT 153 (304)
Q Consensus 124 ~~~fI~~~~~-~g-~VLVHC~aG~sRS~tvv~ 153 (304)
+..+|.+++. +| .|||||..|..|+.-|+.
T Consensus 332 ~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~S 363 (573)
T KOG1089|consen 332 AAAEIAKCLSSEGASVLVHCSDGWDRTCQVSS 363 (573)
T ss_pred HHHHHHHHHHhCCCeEEEEccCCcchhHHHHH
Confidence 3345555665 55 899999999999976553
No 51
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=77.30 E-value=10 Score=28.94 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=17.1
Q ss_pred CCeEEEecCCCchhHHHHHHHHHhhcCCC
Q 021986 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (304)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~s 163 (304)
.+|+|+|..| .||... +.+| ...|.+
T Consensus 62 ~~ivvyC~~G-~rs~~a-~~~L-~~~G~~ 87 (101)
T cd01518 62 KKVLMYCTGG-IRCEKA-SAYL-KERGFK 87 (101)
T ss_pred CEEEEECCCc-hhHHHH-HHHH-HHhCCc
Confidence 4899999988 588643 3344 445653
No 52
>PRK01415 hypothetical protein; Validated
Probab=68.32 E-value=9.9 Score=34.93 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=18.3
Q ss_pred cCCeEEEecCCCchhHHHHHHHHHhhcCCC
Q 021986 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (304)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AYLm~~~~~s 163 (304)
..+|+++|..|. || ..++++|.. .|.+
T Consensus 171 ~k~Iv~yCtgGi-Rs-~kAa~~L~~-~Gf~ 197 (247)
T PRK01415 171 GKKIAMVCTGGI-RC-EKSTSLLKS-IGYD 197 (247)
T ss_pred CCeEEEECCCCh-HH-HHHHHHHHH-cCCC
Confidence 348999999995 87 445566543 4554
No 53
>smart00400 ZnF_CHCC zinc finger.
Probab=61.10 E-value=11 Score=26.06 Aligned_cols=32 Identities=28% Similarity=0.622 Sum_probs=23.8
Q ss_pred EEEecCCCchhHHHHHHHHHhhcCCCHHHHHHHH
Q 021986 138 LVHCFAGVSRSAAIITAYLMRTEQLSSEGALESL 171 (304)
Q Consensus 138 LVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~~V 171 (304)
..||.+ .++++-+ +.++|+.+++++.+|++.+
T Consensus 23 ~~~Cf~-cg~gGd~-i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGNV-ISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCCH-HHHHHHHHCcCHHHHHHHh
Confidence 578874 3455544 6777888899999999875
No 54
>PLN02160 thiosulfate sulfurtransferase
Probab=58.27 E-value=15 Score=30.16 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=17.3
Q ss_pred CCeEEEecCCCchhHHHHHHHHHhhcCCC
Q 021986 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (304)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~s 163 (304)
.+|+|||..| .||...+ ..+...|.+
T Consensus 82 ~~IivyC~sG-~RS~~Aa--~~L~~~G~~ 107 (136)
T PLN02160 82 DDILVGCQSG-ARSLKAT--TELVAAGYK 107 (136)
T ss_pred CcEEEECCCc-HHHHHHH--HHHHHcCCC
Confidence 3899999999 4886543 333445654
No 55
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=57.50 E-value=13 Score=34.90 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=16.0
Q ss_pred CeEEEecCCCchhHHHHHH
Q 021986 136 GVLVHCFAGVSRSAAIITA 154 (304)
Q Consensus 136 ~VLVHC~aG~sRS~tvv~A 154 (304)
.|-|=|.+|..||++++=+
T Consensus 244 tIaiGCTGG~HRSV~iae~ 262 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAER 262 (284)
T ss_pred EEEEEcCCCcCcHHHHHHH
Confidence 5888999999999987633
No 56
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=55.97 E-value=18 Score=25.00 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHh
Q 021986 149 AAIITAYLMRTEQLSSEGALESLRQS 174 (304)
Q Consensus 149 ~tvv~AYLm~~~~~s~~eAl~~Vr~~ 174 (304)
..-+.+.||..+|++.++|+++++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 44567789999999999999999874
No 57
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=53.29 E-value=25 Score=27.12 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=16.4
Q ss_pred CCeEEEecCCCchhHHHHHHHHHhhcCC
Q 021986 135 GGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (304)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~ 162 (304)
.+|+|||..|. ||.. ++ ..++..|.
T Consensus 67 ~~ivv~C~~G~-rs~~-a~-~~L~~~G~ 91 (109)
T cd01533 67 TPIVVNCAGRT-RSII-GA-QSLINAGL 91 (109)
T ss_pred CeEEEECCCCc-hHHH-HH-HHHHHCCC
Confidence 38999999996 7733 33 33445565
No 58
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=53.11 E-value=65 Score=30.52 Aligned_cols=26 Identities=23% Similarity=0.494 Sum_probs=18.0
Q ss_pred CCeEEEecCCCchhHHHHHHHHHhhcCCC
Q 021986 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (304)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~s 163 (304)
.+|+|+|..|. ||. .+++||.. .|.+
T Consensus 172 k~IvvyC~~G~-Rs~-~aa~~L~~-~Gf~ 197 (314)
T PRK00142 172 KKVVMYCTGGI-RCE-KASAWMKH-EGFK 197 (314)
T ss_pred CeEEEECCCCc-HHH-HHHHHHHH-cCCC
Confidence 48999999985 874 45566654 4653
No 59
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=52.12 E-value=18 Score=33.88 Aligned_cols=34 Identities=32% Similarity=0.546 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHH----HcC----CeEEEecCCCchhHHHHH
Q 021986 120 YLDVCFDFIDRRR----KEG----GVLVHCFAGVSRSAAIIT 153 (304)
Q Consensus 120 ~~~~~~~fI~~~~----~~g----~VLVHC~aG~sRS~tvv~ 153 (304)
.+..+.++++..+ ++| .|-|=|.+|..||++++-
T Consensus 223 ~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~e 264 (288)
T PRK05416 223 FLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIAE 264 (288)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHHH
Confidence 3444444444433 356 488899999999998764
No 60
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=52.00 E-value=13 Score=28.29 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=17.9
Q ss_pred cCCeEEEecCCCchhHHHHHHHHHhhcCCC
Q 021986 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (304)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AYLm~~~~~s 163 (304)
..++.|+|..|. || ..++.+|... |.+
T Consensus 61 ~~~ivv~C~~G~-rS-~~aa~~L~~~-G~~ 87 (110)
T COG0607 61 DDPIVVYCASGV-RS-AAAAAALKLA-GFT 87 (110)
T ss_pred CCeEEEEeCCCC-Ch-HHHHHHHHHc-CCc
Confidence 349999999996 77 4445555443 543
No 61
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=49.33 E-value=20 Score=27.87 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=26.1
Q ss_pred CeEEEecCCCchhHHHHHHHHHhhcCCCHHHHHHHHHHhCC
Q 021986 136 GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCE 176 (304)
Q Consensus 136 ~VLVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~~Vr~~Rp 176 (304)
+=.-||.+ .+.++-+ +.++|...++++.+|++++.+...
T Consensus 52 k~~~~Cf~-Cg~~Gd~-i~~v~~~~~~~f~eAv~~l~~~~~ 90 (97)
T PF01807_consen 52 KNRFKCFG-CGKGGDV-IDFVMKYEGCSFKEAVKWLAEEFG 90 (97)
T ss_dssp TTEEEETT-T--EE-H-HHHHHHHHT--HHHHHHHHHHHHT
T ss_pred CCeEEECC-CCCCCcH-HhHHHHHhCCCHHHHHHHHHHHhC
Confidence 34789984 5666654 677899999999999999987543
No 62
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=46.69 E-value=77 Score=23.77 Aligned_cols=58 Identities=17% Similarity=0.374 Sum_probs=28.6
Q ss_pred EEEeccCC---CCCCHHHHHHHHHHHHHHHHHcC-CeEEEecCCCchhHHHHH---HHHHhhcCCC
Q 021986 105 MTVPIRDM---ESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIIT---AYLMRTEQLS 163 (304)
Q Consensus 105 l~ipi~D~---~~~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~---AYLm~~~~~s 163 (304)
.++|.... ........+.............+ .|+++|..|. |+...+. +|.+...|++
T Consensus 34 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~~~~~~~~l~~~g~~ 98 (113)
T PF00581_consen 34 VNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAAAARVAWILKKLGFK 98 (113)
T ss_dssp EEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHHHHHHHHHHHHTTTS
T ss_pred ccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhHHHHHHHHHHHcCCC
Confidence 45666332 23333333444333333333344 7999997775 5544333 3445555553
No 63
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=45.98 E-value=38 Score=28.74 Aligned_cols=27 Identities=19% Similarity=0.041 Sum_probs=19.1
Q ss_pred CCeEEEecCCCchhHHHHHHHHHhhcCCC
Q 021986 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (304)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~s 163 (304)
.+|+|.|..|..||.. ++++++..|.+
T Consensus 117 ~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 117 RPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 3899999998777765 45555555654
No 64
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=43.73 E-value=51 Score=24.93 Aligned_cols=26 Identities=23% Similarity=0.528 Sum_probs=16.6
Q ss_pred CCeEEEecCCCchhHHHHHHHHHhhcCCC
Q 021986 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (304)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~s 163 (304)
.+|+|+|..| .||... +.+| ...|.+
T Consensus 59 ~~vv~~c~~g-~rs~~~-~~~l-~~~G~~ 84 (101)
T cd01528 59 KDIVVLCHHG-GRSMQV-AQWL-LRQGFE 84 (101)
T ss_pred CeEEEEeCCC-chHHHH-HHHH-HHcCCc
Confidence 3899999998 477444 3334 345654
No 65
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=42.03 E-value=28 Score=32.46 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=15.2
Q ss_pred CeEEEecCCCchhHHHH
Q 021986 136 GVLVHCFAGVSRSAAII 152 (304)
Q Consensus 136 ~VLVHC~aG~sRS~tvv 152 (304)
.|-|=|.+|..||++++
T Consensus 245 TIaIGCTGGqHRSV~ia 261 (286)
T COG1660 245 TIAIGCTGGQHRSVYIA 261 (286)
T ss_pred EEEEccCCCccchHHHH
Confidence 58899999999999875
No 66
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=41.01 E-value=1.9e+02 Score=27.13 Aligned_cols=72 Identities=22% Similarity=0.326 Sum_probs=51.6
Q ss_pred CCcceEEEEEeccCCCCC-----CHHHHHHHHHHHHHHHHHcCCeEEEecCCCchhHHHHHHHHHhhcCCCHHHHHHHHH
Q 021986 98 KDLKLVRMTVPIRDMESE-----NLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLR 172 (304)
Q Consensus 98 ~~~~i~~l~ipi~D~~~~-----~l~~~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~~Vr 172 (304)
.+..+.....|..|.... +....++..++..+.++..+.+=++|..|+. -.=+.+|+... +++++|.+.++
T Consensus 32 GGt~~il~nlps~~~g~~~~~~edy~r~yd~~lr~ve~~r~e~~~~~~~vvGvH---PaE~~~l~e~~-~~peea~e~m~ 107 (285)
T COG1831 32 GGTHLILVNLPSWSYGIAPTGGEDYRRLYDIHLRLVEKIREEGPVEAYAVVGVH---PAEVSRLAEAG-RSPEEALEEMR 107 (285)
T ss_pred CCcEEEEeecccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCceeEEEeccC---HHHHHHHHHhc-cChHHHHHHHH
Confidence 344566777777776554 6666677777777777778888899999986 33456777764 88888776664
Q ss_pred H
Q 021986 173 Q 173 (304)
Q Consensus 173 ~ 173 (304)
.
T Consensus 108 ~ 108 (285)
T COG1831 108 H 108 (285)
T ss_pred H
Confidence 3
No 67
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=40.65 E-value=49 Score=26.53 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=17.3
Q ss_pred CeEEEecCCCchhHHHHHHHHHhhcCC
Q 021986 136 GVLVHCFAGVSRSAAIITAYLMRTEQL 162 (304)
Q Consensus 136 ~VLVHC~aG~sRS~tvv~AYLm~~~~~ 162 (304)
+|+|.|..|-.||..+ +++++..|.
T Consensus 88 ~vvvyC~~~G~rs~~a--~~~L~~~G~ 112 (128)
T cd01520 88 KLLIYCARGGMRSQSL--AWLLESLGI 112 (128)
T ss_pred eEEEEeCCCCccHHHH--HHHHHHcCC
Confidence 8999998544577643 367776665
No 68
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=39.35 E-value=39 Score=26.57 Aligned_cols=36 Identities=22% Similarity=0.503 Sum_probs=28.7
Q ss_pred HcCCeEEEecCCCchhHHHHHHHHHhhcCCC-HHHHHHHHHH
Q 021986 133 KEGGVLVHCFAGVSRSAAIITAYLMRTEQLS-SEGALESLRQ 173 (304)
Q Consensus 133 ~~g~VLVHC~aG~sRS~tvv~AYLm~~~~~s-~~eAl~~Vr~ 173 (304)
..++|+=||..| +-++.||+.....+ -.||+..-..
T Consensus 23 ~~~tv~~hcftG-----sdVVdWLv~~~~v~~r~EAl~las~ 59 (99)
T cd04445 23 KDKKVFNHCFTG-----SCVIDWLVSNQSVRNRQEGLMLASS 59 (99)
T ss_pred Hhhccccceecc-----cHHHHHHHHhhcccchHHHHHHHHH
Confidence 467999999987 56889999988886 8888876543
No 69
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=39.33 E-value=33 Score=31.65 Aligned_cols=27 Identities=44% Similarity=0.410 Sum_probs=21.6
Q ss_pred CCCchhHHHHHHHHHhhcCCCHHHHHHHH
Q 021986 143 AGVSRSAAIITAYLMRTEQLSSEGALESL 171 (304)
Q Consensus 143 aG~sRS~tvv~AYLm~~~~~s~~eAl~~V 171 (304)
=|+|||++.+.+-++ .|++.++|.++-
T Consensus 160 PGiSRSG~Ti~~~l~--~G~~r~~A~~fS 186 (259)
T PF02673_consen 160 PGISRSGATITAGLL--LGLDREEAARFS 186 (259)
T ss_pred CCcChHHHHHHHHHH--CCCCHHHHHHHH
Confidence 499999988877665 489999987754
No 70
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=38.65 E-value=41 Score=25.20 Aligned_cols=28 Identities=11% Similarity=-0.052 Sum_probs=16.5
Q ss_pred CCeEEEecCCCchhHHHHHHHHHhhcCCC
Q 021986 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (304)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~s 163 (304)
.+|+|+|..|...++..++ ..+...|.+
T Consensus 51 ~~ivl~c~~G~~~~s~~aa-~~L~~~G~~ 78 (92)
T cd01532 51 TPIVVYGEGGGEDLAPRAA-RRLSELGYT 78 (92)
T ss_pred CeEEEEeCCCCchHHHHHH-HHHHHcCcc
Confidence 4899999998533334443 344444543
No 71
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=37.40 E-value=35 Score=26.73 Aligned_cols=26 Identities=27% Similarity=-0.101 Sum_probs=17.4
Q ss_pred CeEEEecCCCchhHHHHHHHHHhhcCCC
Q 021986 136 GVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (304)
Q Consensus 136 ~VLVHC~aG~sRS~tvv~AYLm~~~~~s 163 (304)
+|+|+|..| +++++.++.+| +..|++
T Consensus 81 ~vv~~c~~g-~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 81 TVVVYDDGG-GFFAARAWWTL-RYFGHE 106 (122)
T ss_pred EEEEECCCC-CccHHHHHHHH-HHcCCC
Confidence 899999997 55656555444 444654
No 72
>PRK05320 rhodanese superfamily protein; Provisional
Probab=37.02 E-value=57 Score=29.99 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=18.3
Q ss_pred cCCeEEEecCCCchhHHHHHHHHHhhcCCC
Q 021986 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (304)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AYLm~~~~~s 163 (304)
..+|+++|..|. || ..++++|.. .|.+
T Consensus 175 dk~IvvyC~~G~-Rs-~~Aa~~L~~-~Gf~ 201 (257)
T PRK05320 175 GKTVVSFCTGGI-RC-EKAAIHMQE-VGID 201 (257)
T ss_pred CCeEEEECCCCH-HH-HHHHHHHHH-cCCc
Confidence 348999999995 77 445566643 4553
No 73
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=36.86 E-value=35 Score=31.86 Aligned_cols=26 Identities=46% Similarity=0.446 Sum_probs=20.5
Q ss_pred CCCchhHHHHHHHHHhhcCCCHHHHHHH
Q 021986 143 AGVSRSAAIITAYLMRTEQLSSEGALES 170 (304)
Q Consensus 143 aG~sRS~tvv~AYLm~~~~~s~~eAl~~ 170 (304)
=|+|||++-+.+-|+ .|++-++|.++
T Consensus 166 PGiSRSG~TI~a~l~--~G~~r~~Aa~f 191 (276)
T PRK12554 166 PGVSRSGATIIAGLL--LGLTREAAARF 191 (276)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 499999887777665 48999998764
No 74
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=36.56 E-value=36 Score=31.37 Aligned_cols=26 Identities=38% Similarity=0.420 Sum_probs=20.1
Q ss_pred CCCchhHHHHHHHHHhhcCCCHHHHHHH
Q 021986 143 AGVSRSAAIITAYLMRTEQLSSEGALES 170 (304)
Q Consensus 143 aG~sRS~tvv~AYLm~~~~~s~~eAl~~ 170 (304)
=|+|||++-+.|-|+ .|++-++|.++
T Consensus 160 PGiSRSG~TI~a~l~--~G~~r~~Aa~f 185 (255)
T TIGR00753 160 PGVSRSGSTISGGLF--IGLNRKAAAEF 185 (255)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 499999887777655 48888888664
No 75
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=35.70 E-value=69 Score=23.61 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=15.4
Q ss_pred CCeEEEecCCCchhHHHHHHHHHhhcCC
Q 021986 135 GGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (304)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~ 162 (304)
.+|+|+|..|. ||.. ++..++..|.
T Consensus 57 ~~ivv~c~~g~-~s~~--a~~~l~~~G~ 81 (96)
T cd01444 57 RPVVVYCYHGN-SSAQ--LAQALREAGF 81 (96)
T ss_pred CCEEEEeCCCC-hHHH--HHHHHHHcCC
Confidence 38999999764 5433 2444455554
No 76
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=34.67 E-value=42 Score=31.22 Aligned_cols=26 Identities=46% Similarity=0.455 Sum_probs=20.3
Q ss_pred CCCchhHHHHHHHHHhhcCCCHHHHHHH
Q 021986 143 AGVSRSAAIITAYLMRTEQLSSEGALES 170 (304)
Q Consensus 143 aG~sRS~tvv~AYLm~~~~~s~~eAl~~ 170 (304)
=|+|||++-+.+-|+ .|++.++|.++
T Consensus 164 PGiSRSG~TI~~~l~--~G~~r~~Aa~f 189 (268)
T PRK00281 164 PGTSRSGATISGGLL--LGLSREAAAEF 189 (268)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 499999887777655 48998888664
No 77
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=33.35 E-value=2.2e+02 Score=21.85 Aligned_cols=55 Identities=20% Similarity=0.209 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCCCchhHHHHHHHHHhhcCCCHH---------HHHHHHHHhCC
Q 021986 121 LDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLSSE---------GALESLRQSCE 176 (304)
Q Consensus 121 ~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AYLm~~~~~s~~---------eAl~~Vr~~Rp 176 (304)
++.+.++|+..++.|.-++-+...-+||..-.+..| ...|++.. .+..++++..+
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L-~~~Gi~~~~~~i~ts~~~~~~~l~~~~~ 79 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL-KKLGIPVDEDEIITSGMAAAEYLKEHKG 79 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH-HHTTTT--GGGEEEHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH-HhcCcCCCcCEEEChHHHHHHHHHhcCC
Confidence 567889999998999655556667788988877777 55677533 35667766433
No 78
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=32.73 E-value=69 Score=27.83 Aligned_cols=33 Identities=30% Similarity=0.489 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHHHHHHcC-CeEEEecCCCchhHH
Q 021986 115 ENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAA 150 (304)
Q Consensus 115 ~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~t 150 (304)
+.+.+.+.++.+.|-+++.+| +||+ | |.|+|++
T Consensus 21 ~~l~~~I~~aa~~i~~~l~~G~Kvl~-c--GNGgSaa 54 (176)
T COG0279 21 EALIEAIERAAQLLVQSLLNGNKVLA-C--GNGGSAA 54 (176)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCEEEE-E--CCCcchh
Confidence 345566788888888888888 5555 5 5556654
No 79
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=31.12 E-value=1.6e+02 Score=24.22 Aligned_cols=57 Identities=16% Similarity=0.313 Sum_probs=34.7
Q ss_pred EEEeccCCCCCC-HHHHHHHHHHHHHHHHHcCC--eEEEecCCCchhHHHHHHHHHhhcC
Q 021986 105 MTVPIRDMESEN-LLDYLDVCFDFIDRRRKEGG--VLVHCFAGVSRSAAIITAYLMRTEQ 161 (304)
Q Consensus 105 l~ipi~D~~~~~-l~~~~~~~~~fI~~~~~~g~--VLVHC~aG~sRS~tvv~AYLm~~~~ 161 (304)
..+++.|...++ ....+..+.+.|.+..+++. .+--|-+|-=++-++.++|.+.-++
T Consensus 57 i~~~~~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~~lh~~iaGGRK~Ms~~~~~a~sl~g 116 (124)
T TIGR03642 57 IPLKFDDILSDEDILTFMSIAAKEVKKERENYGCERIIVNISGGRKIMTIILALYAQLLF 116 (124)
T ss_pred eccCccccCCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEecCCHHHHHHHHHHHHHHhC
Confidence 345566644433 34444555555666666665 4555677765777888888887766
No 80
>PHA02540 61 DNA primase; Provisional
Probab=30.66 E-value=82 Score=30.35 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=28.3
Q ss_pred CCeEEEecC-CCchhHHHHHHHHHhhcCCCHHHHHHHHHHh
Q 021986 135 GGVLVHCFA-GVSRSAAIITAYLMRTEQLSSEGALESLRQS 174 (304)
Q Consensus 135 g~VLVHC~a-G~sRS~tvv~AYLm~~~~~s~~eAl~~Vr~~ 174 (304)
+....||.+ |.+.. ++.|||...++++.||++.+.+.
T Consensus 52 ~~~~yhCFgCGa~Gd---~i~Flme~e~lsf~Eav~~la~~ 89 (337)
T PHA02540 52 DGGVFKCHNCGYHRP---FGNFLKDYEPDLYREYIMERFKE 89 (337)
T ss_pred CceEEEecCCCCCCC---HHHHHHHhcCCChHHHHHHHHHH
Confidence 467899973 55443 56899999999999999966444
No 81
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=29.84 E-value=56 Score=24.45 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=16.8
Q ss_pred CCeEEEecCCCchhHHHHHHHHHhhcCCC
Q 021986 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (304)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~s 163 (304)
.+|+++|..|. ||.. ++.+| +..|.+
T Consensus 57 ~~iv~~c~~G~-rs~~-aa~~L-~~~G~~ 82 (95)
T cd01534 57 ARIVLADDDGV-RADM-TASWL-AQMGWE 82 (95)
T ss_pred CeEEEECCCCC-hHHH-HHHHH-HHcCCE
Confidence 38999999985 7753 33334 555653
No 82
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=29.80 E-value=26 Score=27.40 Aligned_cols=10 Identities=30% Similarity=0.803 Sum_probs=8.6
Q ss_pred CCeEEEecCC
Q 021986 135 GGVLVHCFAG 144 (304)
Q Consensus 135 g~VLVHC~aG 144 (304)
.+|+|||.-|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 3899999877
No 83
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=29.67 E-value=42 Score=27.22 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=22.8
Q ss_pred cCCCchhHHHHHHHHHhhcCCCHHHHHHHHHHhC
Q 021986 142 FAGVSRSAAIITAYLMRTEQLSSEGALESLRQSC 175 (304)
Q Consensus 142 ~aG~sRS~tvv~AYLm~~~~~s~~eAl~~Vr~~R 175 (304)
..|++|+.|.+++||+.....+-. -++.+...|
T Consensus 22 ~lgi~R~vA~tlv~L~~~~E~sS~-~IE~~sgLR 54 (124)
T COG4738 22 ILGIPRNVATTLVCLAKGDEASSR-EIERVSGLR 54 (124)
T ss_pred HcCCCchHHHHHHHHhcCcchhhh-hhHHhhcCC
Confidence 359999999999999987555432 344444443
No 84
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=29.29 E-value=74 Score=25.05 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=16.0
Q ss_pred CCeEEEecCCCchhHHHHHHHHHhhcCC
Q 021986 135 GGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (304)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~ 162 (304)
.+|+|+|..|. ||..++ . .++..|.
T Consensus 65 ~~ivv~C~~G~-rs~~aa-~-~L~~~G~ 89 (117)
T cd01522 65 RPVLLLCRSGN-RSIAAA-E-AAAQAGF 89 (117)
T ss_pred CeEEEEcCCCc-cHHHHH-H-HHHHCCC
Confidence 38999999884 776543 2 3344454
No 85
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=28.34 E-value=81 Score=23.70 Aligned_cols=26 Identities=19% Similarity=0.163 Sum_probs=16.7
Q ss_pred CCeEEEecCCCchhHHHHHHHHHhhcCCC
Q 021986 135 GGVLVHCFAGVSRSAAIITAYLMRTEQLS 163 (304)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~s 163 (304)
.+|+|+|..|. ||.. ++..| ...|.+
T Consensus 62 ~~ivv~C~~G~-rs~~-aa~~L-~~~G~~ 87 (100)
T cd01523 62 QEVTVICAKEG-SSQF-VAELL-AERGYD 87 (100)
T ss_pred CeEEEEcCCCC-cHHH-HHHHH-HHcCce
Confidence 48999999985 7743 33333 445653
No 86
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=28.16 E-value=1.1e+02 Score=27.28 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHcCCeEEEecCCCchhHHHHHHHHHhh
Q 021986 120 YLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRT 159 (304)
Q Consensus 120 ~~~~~~~fI~~~~~~g~VLVHC~aG~sRS~tvv~AYLm~~ 159 (304)
.|.++++.|-++ .|+|+|- |+|||+-+.=++-|+-
T Consensus 27 ~~~~a~~~i~~~--~gkv~V~---G~GkSG~Igkk~Aa~L 61 (202)
T COG0794 27 DFVRAVELILEC--KGKVFVT---GVGKSGLIGKKFAARL 61 (202)
T ss_pred HHHHHHHHHHhc--CCcEEEE---cCChhHHHHHHHHHHH
Confidence 466666666544 6899886 9999999887776654
No 87
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=28.08 E-value=1e+02 Score=30.03 Aligned_cols=11 Identities=55% Similarity=1.035 Sum_probs=9.4
Q ss_pred cC-CeEEEecCC
Q 021986 134 EG-GVLVHCFAG 144 (304)
Q Consensus 134 ~g-~VLVHC~aG 144 (304)
.| .||.||.+|
T Consensus 166 dg~~ILThcnsg 177 (363)
T PRK05772 166 DGDTVLTQCNAG 177 (363)
T ss_pred CCCEEEEecCCc
Confidence 56 899999887
No 88
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=27.54 E-value=57 Score=27.52 Aligned_cols=20 Identities=20% Similarity=0.529 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcC-CeEEEec
Q 021986 123 VCFDFIDRRRKEG-GVLVHCF 142 (304)
Q Consensus 123 ~~~~fI~~~~~~g-~VLVHC~ 142 (304)
.++.+++++...| +|||+|.
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~ 37 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCE 37 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeC
Confidence 7889999999988 9999995
No 89
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=27.22 E-value=1.3e+02 Score=26.51 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHcC-CeEEEecCCCchhHHHHHHH
Q 021986 118 LDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAY 155 (304)
Q Consensus 118 ~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AY 155 (304)
.+.+.++++.|.+++.++ +|++. |.|+|++++.-+
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~ 59 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHF 59 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHH
Confidence 356888888888888877 66664 777886655443
No 90
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=26.67 E-value=1.8e+02 Score=28.65 Aligned_cols=37 Identities=30% Similarity=0.526 Sum_probs=28.0
Q ss_pred EEEecCCCchhHHHHHHHHHhhcCCCHHHHHHHHHHhCC
Q 021986 138 LVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCE 176 (304)
Q Consensus 138 LVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~~Vr~~Rp 176 (304)
..||. |.+.++- ++-++|...++++.+|++++.+.-.
T Consensus 55 ~~~Cf-~Cg~~Gd-~i~fv~~~~~~sf~eA~~~La~~~g 91 (415)
T TIGR01391 55 FYHCF-GCGAGGD-AIKFLMEIEGISFVEAVEELAKRAG 91 (415)
T ss_pred cEEEC-CCCCCCC-HHHHHHHHhCCCHHHHHHHHHHHcC
Confidence 47887 3344444 4688999999999999999977644
No 91
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=26.66 E-value=42 Score=28.61 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=49.6
Q ss_pred HHHHHHHHHH--Hc-CCeEEEecCCCchhHHHHHHHHHhhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHcCCCCC
Q 021986 123 VCFDFIDRRR--KE-GGVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALESLRQSCESVCPNDGFLEQLKMFEEMGFKVN 199 (304)
Q Consensus 123 ~~~~fI~~~~--~~-g~VLVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~~Vr~~Rp~i~pn~~f~~qL~~~e~~~~~~~ 199 (304)
.+.++|.+.. .. .+|+|-|-.|.+=.-++++|-.+...|+...- --..+.-..+..+..+++.+++++.++.
T Consensus 11 ~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 85 (169)
T PF03853_consen 11 AIAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV-----YLVGPPEKLSEDAKQQLEILKKMGIKII 85 (169)
T ss_dssp HHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE-----EEEESSSSTSHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE-----EEEeccccCCHHHHHHHHHHHhcCCcEe
Confidence 4555666666 33 48999999888777778888877777887321 1122334667889999999999987664
Q ss_pred C
Q 021986 200 R 200 (304)
Q Consensus 200 ~ 200 (304)
.
T Consensus 86 ~ 86 (169)
T PF03853_consen 86 E 86 (169)
T ss_dssp S
T ss_pred e
Confidence 4
No 92
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=26.42 E-value=2.5e+02 Score=25.21 Aligned_cols=51 Identities=31% Similarity=0.429 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHHHHHH----HcC-CeEEEecCCCchhHHHHHHHHHhhcCCCHHHHHH
Q 021986 113 ESENLLDYLDVCFDFIDRRR----KEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEGALE 169 (304)
Q Consensus 113 ~~~~l~~~~~~~~~fI~~~~----~~g-~VLVHC~aG~sRS~tvv~AYLm~~~~~s~~eAl~ 169 (304)
..+.+...+..+..|.++.. .+| .|+|+|++.. .=+++|+..|.+.++...
T Consensus 130 ~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGns------LR~i~~~l~g~s~~~i~~ 185 (214)
T KOG0235|consen 130 DGESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNS------LRAIVKHLEGISDEAIKE 185 (214)
T ss_pred CCccHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHH------HHHHHHHHhcCCHhhhhh
Confidence 45566666777888877654 356 8999998632 334566677888665543
No 93
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=26.35 E-value=44 Score=25.83 Aligned_cols=12 Identities=42% Similarity=0.786 Sum_probs=10.9
Q ss_pred CCeEEEecCCCc
Q 021986 135 GGVLVHCFAGVS 146 (304)
Q Consensus 135 g~VLVHC~aG~s 146 (304)
.+||+-|.+|++
T Consensus 4 ~~ILl~C~~G~s 15 (95)
T TIGR00853 4 TNILLLCAAGMS 15 (95)
T ss_pred cEEEEECCCchh
Confidence 489999999998
No 94
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=26.06 E-value=64 Score=28.59 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=19.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHh
Q 021986 153 TAYLMRTEQLSSEGALESLRQS 174 (304)
Q Consensus 153 ~AYLm~~~~~s~~eAl~~Vr~~ 174 (304)
=+.||+.+|+|-+|||+++|..
T Consensus 151 KglLM~~~g~sE~EAy~~lR~~ 172 (194)
T COG3707 151 KGLLMKRRGLSEEEAYKLLRRT 172 (194)
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 3568999999999999999874
No 95
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=25.70 E-value=62 Score=24.18 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=16.2
Q ss_pred CCeEEEecCCCchhHHHHHHHHHhhcCC
Q 021986 135 GGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (304)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~ 162 (304)
.+|+|+|..| .||.. ++.++...|.
T Consensus 62 ~~ivv~c~~g-~~s~~--~~~~l~~~G~ 86 (103)
T cd01447 62 KPFVFYCASG-WRSAL--AGKTLQDMGL 86 (103)
T ss_pred CeEEEEcCCC-CcHHH--HHHHHHHcCh
Confidence 3899999887 47643 3445555554
No 96
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=25.63 E-value=82 Score=26.15 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHcC-CeEEEecC
Q 021986 120 YLDVCFDFIDRRRKEG-GVLVHCFA 143 (304)
Q Consensus 120 ~~~~~~~fI~~~~~~g-~VLVHC~a 143 (304)
...-++..++++.++| +|+|+|..
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d 38 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCED 38 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4566888999999988 99999953
No 97
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=24.68 E-value=2e+02 Score=22.23 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=12.3
Q ss_pred CeEEEecCCCchhHHH
Q 021986 136 GVLVHCFAGVSRSAAI 151 (304)
Q Consensus 136 ~VLVHC~aG~sRS~tv 151 (304)
+|+|||..|-.||+..
T Consensus 68 ~iv~~C~~~g~rs~~a 83 (113)
T cd01443 68 LAIFYCGSSQGRGPRA 83 (113)
T ss_pred EEEEECCCCCcccHHH
Confidence 8999999865677543
No 98
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=24.59 E-value=89 Score=23.54 Aligned_cols=26 Identities=8% Similarity=0.033 Sum_probs=16.5
Q ss_pred cCCeEEEecCCCchhHHHHHHHHHhhcCC
Q 021986 134 EGGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (304)
Q Consensus 134 ~g~VLVHC~aG~sRS~tvv~AYLm~~~~~ 162 (304)
..+|+|+|..|. ||..+ |+.+...|.
T Consensus 65 ~~~vv~~c~~g~-~s~~~--a~~L~~~G~ 90 (105)
T cd01525 65 GKIIVIVSHSHK-HAALF--AAFLVKCGV 90 (105)
T ss_pred CCeEEEEeCCCc-cHHHH--HHHHHHcCC
Confidence 348999999886 66543 333444455
No 99
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=24.31 E-value=84 Score=23.43 Aligned_cols=25 Identities=8% Similarity=-0.091 Sum_probs=16.1
Q ss_pred CCeEEEecCCCchhHHHHHHHHHhhcCC
Q 021986 135 GGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (304)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~ 162 (304)
.+|+|+|..| .||+. ++.+| +..|.
T Consensus 57 ~~ivv~c~~g-~~s~~-~~~~l-~~~G~ 81 (96)
T cd01529 57 TRYVLTCDGS-LLARF-AAQEL-LALGG 81 (96)
T ss_pred CCEEEEeCCh-HHHHH-HHHHH-HHcCC
Confidence 3899999877 47744 34444 44554
No 100
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=23.49 E-value=85 Score=29.28 Aligned_cols=26 Identities=46% Similarity=0.455 Sum_probs=17.9
Q ss_pred CCCchhHHHHHHHHHhhcCCCHHHHHHH
Q 021986 143 AGVSRSAAIITAYLMRTEQLSSEGALES 170 (304)
Q Consensus 143 aG~sRS~tvv~AYLm~~~~~s~~eAl~~ 170 (304)
=|.|||++-+.+-|. .|++-++|.++
T Consensus 165 PG~SRSGaTI~~~ll--lG~~r~~Aaef 190 (270)
T COG1968 165 PGTSRSGATISGGLL--LGLSREAAAEF 190 (270)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 499999876665543 37777777554
No 101
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=23.39 E-value=55 Score=28.26 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=25.9
Q ss_pred CccccCCeEecChHhHhcHHh--hhcCCCeEEEE
Q 021986 2 PYLVREHLFIGNISDAADILQ--NGSSEITHMLS 33 (304)
Q Consensus 2 P~~I~p~LylG~~~~a~d~~~--L~~~gIt~VIn 33 (304)
|+...|++|+-++.+- +.+. |++.||+.||-
T Consensus 14 p~l~~P~l~V~si~~I-~~~~~~Lk~~Gik~li~ 46 (168)
T PF09419_consen 14 PSLLLPHLYVPSIRDI-DFEANHLKKKGIKALIF 46 (168)
T ss_pred ccccCCCEEcCChhhC-CcchhhhhhcCceEEEE
Confidence 7788999999988654 6677 99999999874
No 102
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=23.37 E-value=1.6e+02 Score=22.85 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=15.2
Q ss_pred CeEEEecCCCchhHHHHHHHHHhhcCC
Q 021986 136 GVLVHCFAGVSRSAAIITAYLMRTEQL 162 (304)
Q Consensus 136 ~VLVHC~aG~sRS~tvv~AYLm~~~~~ 162 (304)
+|+|+|..|. ||... +.. +...|.
T Consensus 60 ~vvlyC~~G~-rS~~a-a~~-L~~~G~ 83 (101)
T TIGR02981 60 TVKLYCNAGR-QSGMA-KDI-LLDMGY 83 (101)
T ss_pred eEEEEeCCCH-HHHHH-HHH-HHHcCC
Confidence 7999999985 76544 333 334454
No 103
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=22.99 E-value=4.7e+02 Score=24.89 Aligned_cols=39 Identities=13% Similarity=0.352 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHH---cCCeEEEecCCCchhHHHHHHHHHhhcCC
Q 021986 121 LDVCFDFIDRRRK---EGGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (304)
Q Consensus 121 ~~~~~~fI~~~~~---~g~VLVHC~aG~sRS~tvv~AYLm~~~~~ 162 (304)
|.+...+|.+.++ ..+|...|.+|+ |- =-..|||. ..|+
T Consensus 156 FrefP~~v~~~~~~~~~KkVvmyCTGGI-RC-EKas~~m~-~~GF 197 (308)
T COG1054 156 FREFPAWVEENLDLLKDKKVVMYCTGGI-RC-EKASAWMK-ENGF 197 (308)
T ss_pred hhhhHHHHHHHHHhccCCcEEEEcCCce-ee-hhhHHHHH-Hhcc
Confidence 6677777766554 349999999998 54 33345443 3344
No 104
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=22.63 E-value=1.9e+02 Score=30.06 Aligned_cols=36 Identities=33% Similarity=0.341 Sum_probs=28.9
Q ss_pred CCeEEEecCCCchhHHHHHHHHHh---hcCCCHHHHHHHHHH
Q 021986 135 GGVLVHCFAGVSRSAAIITAYLMR---TEQLSSEGALESLRQ 173 (304)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~---~~~~s~~eAl~~Vr~ 173 (304)
.+..|||.-|. +++++++||+ ..+++.++|++.++.
T Consensus 161 ~pdviH~ND~H---tal~~~el~r~l~~~~~~~~~a~~~~~~ 199 (601)
T TIGR02094 161 DPDVYHLNEGH---AAFVTLERIRELIAQGLSFEEAWEAVRK 199 (601)
T ss_pred CceEEEeCCch---HHHHHHHHHHHHHHcCCCHHHHHHhcCC
Confidence 38999999997 4899999865 357889999877664
No 105
>PF08159 NUC153: NUC153 domain; InterPro: IPR012580 This small domain is found in a novel nucleolar family [].; GO: 0005634 nucleus
Probab=22.59 E-value=55 Score=20.03 Aligned_cols=20 Identities=35% Similarity=0.698 Sum_probs=16.9
Q ss_pred HHHHHcCCCCCCCChHHHHH
Q 021986 189 KMFEEMGFKVNRGSPIYKRF 208 (304)
Q Consensus 189 ~~~e~~~~~~~~~~~~yk~~ 208 (304)
.+|+...+.+|.++|.||+.
T Consensus 6 ~lf~~~dF~ID~t~~~yk~~ 25 (30)
T PF08159_consen 6 ALFEDPDFAIDPTSPEYKKT 25 (30)
T ss_pred HhhCCcccccCCCCHHHHhh
Confidence 46778889999999999875
No 106
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=22.54 E-value=1e+02 Score=26.15 Aligned_cols=25 Identities=8% Similarity=0.060 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHcC-CeEEEecCC
Q 021986 120 YLDVCFDFIDRRRKEG-GVLVHCFAG 144 (304)
Q Consensus 120 ~~~~~~~fI~~~~~~g-~VLVHC~aG 144 (304)
.+.-++..+++++++| +|+|+|...
T Consensus 14 ~~~~acrL~~Ka~~~G~rv~I~~~d~ 39 (154)
T PRK06646 14 LLKSILLLIEKCYYSDLKSVILTADA 39 (154)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 3567889999999999 999999643
No 107
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=21.57 E-value=1.1e+02 Score=25.25 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHcC-CeEEEecC
Q 021986 121 LDVCFDFIDRRRKEG-GVLVHCFA 143 (304)
Q Consensus 121 ~~~~~~fI~~~~~~g-~VLVHC~a 143 (304)
..-++..++++.++| +|+|+|..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d 38 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPD 38 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 456788899999988 99999963
No 108
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=21.37 E-value=83 Score=23.50 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=10.9
Q ss_pred CeEEEecCCCchh
Q 021986 136 GVLVHCFAGVSRS 148 (304)
Q Consensus 136 ~VLVHC~aG~sRS 148 (304)
+|++.|.+|++=|
T Consensus 2 kilvvCg~G~gtS 14 (87)
T cd05567 2 KIVFACDAGMGSS 14 (87)
T ss_pred EEEEECCCCccHH
Confidence 6899999998743
No 109
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=21.35 E-value=1e+02 Score=24.27 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=16.4
Q ss_pred CCeEEEecCCCchhHHHHHHHHHhhcCC
Q 021986 135 GGVLVHCFAGVSRSAAIITAYLMRTEQL 162 (304)
Q Consensus 135 g~VLVHC~aG~sRS~tvv~AYLm~~~~~ 162 (304)
.+|+|+|..|. ||...+ . .+...|.
T Consensus 73 ~~ivv~C~~G~-rs~~aa-~-~L~~~G~ 97 (122)
T cd01526 73 SPIYVVCRRGN-DSQTAV-R-KLKELGL 97 (122)
T ss_pred CcEEEECCCCC-cHHHHH-H-HHHHcCC
Confidence 48999999985 775332 2 3445566
No 110
>PRK13938 phosphoheptose isomerase; Provisional
Probab=20.68 E-value=2.3e+02 Score=24.92 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcC-CeEEEecCCCchhHHHHHHHH
Q 021986 115 ENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYL 156 (304)
Q Consensus 115 ~~l~~~~~~~~~fI~~~~~~g-~VLVHC~aG~sRS~tvv~AYL 156 (304)
..+.+.+.++.+.+.+++++| +|+| | |.|+|+.++...-
T Consensus 25 ~~~~~~~~~~a~~~~~~l~~g~rI~i-~--G~G~S~~~A~~fa 64 (196)
T PRK13938 25 RVLLEAARAIGDRLIAGYRAGARVFM-C--GNGGSAADAQHFA 64 (196)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCEEEE-E--eCcHHHHHHHHHH
Confidence 456677888888888888887 5555 4 6667766554443
No 111
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=20.48 E-value=1.4e+02 Score=28.82 Aligned_cols=15 Identities=47% Similarity=0.764 Sum_probs=12.1
Q ss_pred cC-CeEEEecCCCchh
Q 021986 134 EG-GVLVHCFAGVSRS 148 (304)
Q Consensus 134 ~g-~VLVHC~aG~sRS 148 (304)
.| .||.||.+|..++
T Consensus 147 ~g~~ILThc~sg~lat 162 (339)
T PRK06036 147 DGDTVLTHCNAGRLAC 162 (339)
T ss_pred CCCEEEEecCCccccc
Confidence 45 8999999997654
Done!