Query 021987
Match_columns 304
No_of_seqs 132 out of 201
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 07:09:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07777 MFMR: G-box binding p 100.0 2.9E-74 6.3E-79 512.3 15.2 179 1-180 1-189 (189)
2 PF00170 bZIP_1: bZIP transcri 97.0 0.00047 1E-08 51.3 2.1 26 278-303 1-26 (64)
3 smart00338 BRLZ basic region l 96.9 0.00061 1.3E-08 50.8 2.2 24 280-303 3-26 (65)
4 PF07716 bZIP_2: Basic region 96.2 0.0036 7.8E-08 45.5 2.5 23 280-303 3-25 (54)
5 KOG0709 CREB/ATF family transc 93.1 0.074 1.6E-06 54.4 3.1 28 276-303 245-272 (472)
6 KOG4343 bZIP transcription fac 92.8 0.17 3.7E-06 53.0 5.2 29 275-303 274-302 (655)
7 PF03131 bZIP_Maf: bZIP Maf tr 91.1 0.27 5.9E-06 39.3 3.6 28 276-303 24-51 (92)
8 KOG2236 Uncharacterized conser 81.0 2.1 4.6E-05 44.2 4.4 42 31-84 410-454 (483)
9 KOG3584 cAMP response element 79.8 1.5 3.2E-05 43.2 2.8 30 274-303 283-312 (348)
10 KOG0837 Transcriptional activa 74.7 3.2 6.9E-05 40.3 3.4 30 273-302 197-226 (279)
11 KOG4005 Transcription factor X 67.1 4.7 0.0001 38.9 2.8 25 279-303 66-90 (292)
12 PF06495 Transformer: Fruit fl 57.1 10 0.00022 34.9 2.9 8 45-52 155-162 (182)
13 KOG3248 Transcription factor T 47.6 65 0.0014 32.8 7.0 78 27-106 72-162 (421)
14 KOG4571 Activating transcripti 33.5 31 0.00067 34.0 2.3 28 277-304 221-249 (294)
15 KOG2893 Zn finger protein [Gen 30.1 1.9E+02 0.0041 28.5 7.0 56 48-106 140-202 (341)
16 PF07897 DUF1675: Protein of u 29.9 54 0.0012 32.1 3.3 27 277-303 69-96 (284)
17 PLN03162 golden-2 like transcr 25.1 75 0.0016 32.9 3.4 8 59-66 395-402 (526)
18 TIGR01628 PABP-1234 polyadenyl 24.6 2.3E+02 0.0049 28.8 6.8 9 58-66 410-418 (562)
19 PF04644 Motilin_ghrelin: Moti 24.5 66 0.0014 21.6 2.0 17 279-295 7-23 (28)
No 1
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=2.9e-74 Score=512.30 Aligned_cols=179 Identities=60% Similarity=1.043 Sum_probs=168.5
Q ss_pred CCCCCCCCCcCCCCCCCCCCCCCCCcCcCCchhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCC--c
Q 021987 1 MGNNEDGKSFKSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAP--Y 78 (304)
Q Consensus 1 MG~~E~~~~~K~~K~ss~~~~eq~~~~vyPDWsamQAYYgp~v~~Pp~f~s~VAs~p~pHPYMWGp~QpmmPPYGtP--Y 78 (304)
||++|++|++|++|++++++++|+++|+||||++||||||+| ++|+||++.||++|++||||||+||||||||||| |
T Consensus 1 MG~~E~~~~~k~~k~~s~~~~~~~~~~~ypDWs~mQAYyg~~-~~p~~f~s~va~sp~phPYMWG~~q~mmPPYGtP~pY 79 (189)
T PF07777_consen 1 MGSSEEGKPSKSSKPSSPPPEDQPTPHVYPDWSAMQAYYGPG-APPPYFNSAVASSPQPHPYMWGPQQPMMPPYGTPVPY 79 (189)
T ss_pred CCCccCCcCCCCCCCCCCCcCCCCCCccCCccHhhhhccCCC-CCCcccCcccCCCCCCCCcccCCCccccCCCCCCCCC
Confidence 999999999999999887655899999999999999999999 8899999999999999999999999999999997 9
Q ss_pred cccccCCccccCCCCCCCCCCCCCCCCCCCC--CCCCCCccC-CCCCCCCcccchhhhhcccC-CcccccCCCCCCCCCC
Q 021987 79 AAIYSTGGVYAHPAVPLGSHAHNHGVPTSPA--AVTPLNTEA-PTKSSGNADRGLAKKLKGLD-GLAMSIGNASAESAEG 154 (304)
Q Consensus 79 ~AmYp~GGvYAHP~mp~gs~p~~~~~~~sp~--~~tp~s~e~-~~Kss~~kdk~~~Kk~Kg~~-Glams~G~g~~~~~~g 154 (304)
+||||||||||||+||+++|||+++.+++.. ++|++++|+ ++|++++|||+++||||||| ||+|++||++.+|+++
T Consensus 80 ~A~YphGgvYAHP~mp~~s~p~~~~~~~s~~~~~~tp~s~E~~p~Kss~~kd~~~~KksKg~~g~~a~s~~n~~~gk~~~ 159 (189)
T PF07777_consen 80 PAMYPHGGVYAHPSMPPGSHPFSPYAMPSPETPAATPLSTETDPGKSSGNKDKGSMKKSKGFDGGLAMSIKNGESGKTSG 159 (189)
T ss_pred ccccCCCccccCCCCCcccccCCCcccccccccCCCCcccccccccCcCccccccccccccccccceeeccCCccCcccc
Confidence 9999999999999999999999999999854 479999999 69999999999999999999 6999999999999998
Q ss_pred C-CCCCCCCc---CCCCCCCCCCCCccccc
Q 021987 155 G-AEQRPSQS---EADGSTDGSDGNTVRAG 180 (304)
Q Consensus 155 ~-s~~~~SqS---esegSSdGSD~Ns~~~s 180 (304)
+ +|++.||| .+||||||||+|+++++
T Consensus 160 ~s~n~~~Sqs~eSgsegSSdgSD~Nt~~~~ 189 (189)
T PF07777_consen 160 SSANDGSSQSSESGSEGSSDGSDGNTNNDS 189 (189)
T ss_pred CCCCCccCccccccccccccCcCccccCCC
Confidence 4 58899997 47999999999999874
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=96.96 E-value=0.00047 Score=51.34 Aligned_cols=26 Identities=65% Similarity=0.887 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhhhHHHHHhHHhhhc
Q 021987 278 ERELKRERRKQSNRESARRSRLRKQV 303 (304)
Q Consensus 278 ~~~~~r~~r~~snresarrsr~rkq~ 303 (304)
|.+.++++|++.||++|||+|.||++
T Consensus 1 e~~~k~~~rr~rNR~AAr~~R~RKk~ 26 (64)
T PF00170_consen 1 EKEDKRERRRERNREAARRSRQRKKQ 26 (64)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999975
No 3
>smart00338 BRLZ basic region leucin zipper.
Probab=96.89 E-value=0.00061 Score=50.78 Aligned_cols=24 Identities=58% Similarity=0.839 Sum_probs=21.9
Q ss_pred HHHHHHHHhhhhHHHHHhHHhhhc
Q 021987 280 ELKRERRKQSNRESARRSRLRKQV 303 (304)
Q Consensus 280 ~~~r~~r~~snresarrsr~rkq~ 303 (304)
+.|+.||+..||++|+++|.||++
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~ 26 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKA 26 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHH
Confidence 568999999999999999999875
No 4
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=96.21 E-value=0.0036 Score=45.48 Aligned_cols=23 Identities=70% Similarity=0.882 Sum_probs=20.1
Q ss_pred HHHHHHHHhhhhHHHHHhHHhhhc
Q 021987 280 ELKRERRKQSNRESARRSRLRKQV 303 (304)
Q Consensus 280 ~~~r~~r~~snresarrsr~rkq~ 303 (304)
+.++.||+ .||++|+|+|.||++
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~ 25 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQ 25 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHH
Confidence 56678888 999999999999975
No 5
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=93.11 E-value=0.074 Score=54.39 Aligned_cols=28 Identities=50% Similarity=0.601 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHhhhhHHHHHhHHhhhc
Q 021987 276 QNERELKRERRKQSNRESARRSRLRKQV 303 (304)
Q Consensus 276 ~~~~~~~r~~r~~snresarrsr~rkq~ 303 (304)
-+|+.|||.|||+.|.+||.-||.||+.
T Consensus 245 aEEriLKrvRRKIrNK~SAQESRrkKke 272 (472)
T KOG0709|consen 245 AEERILKRVRRKIRNKRSAQESRRKKKE 272 (472)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHhh
Confidence 3789999999999999999999999974
No 6
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=92.80 E-value=0.17 Score=52.98 Aligned_cols=29 Identities=41% Similarity=0.448 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHhHHhhhc
Q 021987 275 IQNERELKRERRKQSNRESARRSRLRKQV 303 (304)
Q Consensus 275 ~~~~~~~~r~~r~~snresarrsr~rkq~ 303 (304)
..|..-+||+.||+.|||||--||.||++
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKE 302 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKE 302 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35778899999999999999999999864
No 7
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=91.14 E-value=0.27 Score=39.28 Aligned_cols=28 Identities=39% Similarity=0.459 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHhhhhHHHHHhHHhhhc
Q 021987 276 QNERELKRERRKQSNRESARRSRLRKQV 303 (304)
Q Consensus 276 ~~~~~~~r~~r~~snresarrsr~rkq~ 303 (304)
.+..++|..||...||..|+++|.||-.
T Consensus 24 ~q~~~lK~~RRr~KNR~~A~~cR~rk~~ 51 (92)
T PF03131_consen 24 EQIAELKQRRRRLKNRGYAQNCRKRKLD 51 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557889999999999999999999853
No 8
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.02 E-value=2.1 Score=44.21 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=24.4
Q ss_pred chhhhhhhcCCCCCCC-CCCCCCCCCCCCCCCCccCCCCCCCCCCCC--CccccccC
Q 021987 31 DWAAMQAYYGPRVAIP-PYYNSPIASGHAPQPYMWGPAQPMMPPYGA--PYAAIYST 84 (304)
Q Consensus 31 DWsamQAYYgp~v~~P-p~f~s~VAs~p~pHPYMWGp~QpmmPPYGt--PY~AmYp~ 84 (304)
-|-.+| ||+ -++| |+|+.+ ++||.+ +.+.+.||- ||-+|||-
T Consensus 410 s~p~pq-~qN--yppp~p~f~m~-----~~hP~~----~~p~~~~g~~~P~~~mpp~ 454 (483)
T KOG2236|consen 410 SGPSPQ-QQN--YPPPSPSFPMF-----QPHPPE----SNPPANFGQANPFNQMPPA 454 (483)
T ss_pred CCCCcc-cCC--CCCCCCCCCcc-----CCCCCC----CCCcccccccCccccCCCC
Confidence 355555 333 1444 577543 677754 335566776 88778763
No 9
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=79.84 E-value=1.5 Score=43.23 Aligned_cols=30 Identities=40% Similarity=0.381 Sum_probs=25.5
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHhHHhhhc
Q 021987 274 WIQNERELKRERRKQSNRESARRSRLRKQV 303 (304)
Q Consensus 274 ~~~~~~~~~r~~r~~snresarrsr~rkq~ 303 (304)
-..+|..+||+-|-+.|||-||-=|++|++
T Consensus 283 ~~aee~trKRevRLmKNREAARECRRKKKE 312 (348)
T KOG3584|consen 283 QGAEEATRKREVRLMKNREAARECRRKKKE 312 (348)
T ss_pred ccchhhhhHHHHHHHhhHHHHHHHHHhHhH
Confidence 356888899999999999999998877753
No 10
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=74.73 E-value=3.2 Score=40.27 Aligned_cols=30 Identities=33% Similarity=0.520 Sum_probs=23.5
Q ss_pred chhhhHHHHHHHHHHhhhhHHHHHhHHhhh
Q 021987 273 TWIQNERELKRERRKQSNRESARRSRLRKQ 302 (304)
Q Consensus 273 ~~~~~~~~~~r~~r~~snresarrsr~rkq 302 (304)
.+..++..+|-+|..+.|||-|+++|.||-
T Consensus 197 id~e~qe~~kleRkrlrnreaa~Kcr~rkL 226 (279)
T KOG0837|consen 197 IDMEDQEKIKLERKRLRNREAASKCRKRKL 226 (279)
T ss_pred ccchhHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334566666777778999999999999984
No 11
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=67.08 E-value=4.7 Score=38.94 Aligned_cols=25 Identities=44% Similarity=0.480 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhhhHHHHHhHHhhhc
Q 021987 279 RELKRERRKQSNRESARRSRLRKQV 303 (304)
Q Consensus 279 ~~~~r~~r~~snresarrsr~rkq~ 303 (304)
-|+|-+|||..||--|.-+|=||++
T Consensus 66 ~EEK~~RrKLKNRVAAQtaRDrKKa 90 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTARDRKKA 90 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 4778899999999999999999986
No 12
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=57.12 E-value=10 Score=34.95 Aligned_cols=8 Identities=38% Similarity=1.148 Sum_probs=3.7
Q ss_pred CCCCCCCC
Q 021987 45 IPPYYNSP 52 (304)
Q Consensus 45 ~Pp~f~s~ 52 (304)
+||||++.
T Consensus 155 ~~p~~apy 162 (182)
T PF06495_consen 155 MPPYFAPY 162 (182)
T ss_pred CCcccCcc
Confidence 34555443
No 13
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=47.58 E-value=65 Score=32.83 Aligned_cols=78 Identities=26% Similarity=0.429 Sum_probs=49.6
Q ss_pred CcCCchhhhhhhcCCCCC--CCCCC-CCCCCCCCCCCCCccCCCCCCCCCCCC--Cccc--------cccCCccccCCCC
Q 021987 27 HMYTDWAAMQAYYGPRVA--IPPYY-NSPIASGHAPQPYMWGPAQPMMPPYGA--PYAA--------IYSTGGVYAHPAV 93 (304)
Q Consensus 27 ~vyPDWsamQAYYgp~v~--~Pp~f-~s~VAs~p~pHPYMWGp~QpmmPPYGt--PY~A--------mYp~GGvYAHP~m 93 (304)
|.-.|-+.+|.-|-|..+ +.||| ++.-|-+.-|||--|= --|+|+||. ||++ +-||=.+=.||..
T Consensus 72 ~~p~dis~k~g~~r~~~~pd~~p~y~ls~gavgqip~~l~wp--~y~~pt~~~~~p~p~~~~asmsrf~ph~~~p~~p~~ 149 (421)
T KOG3248|consen 72 PLPADISPKQGIPRPPHPPDLSPFYPLSPGAVGQIPHPLGWP--VYPIPTFGFRHPYPGVVNASMSRFSPHHVEPGHPGL 149 (421)
T ss_pred CCcccccccCCCCCCCCCccccccccCCccccccCCCccCCc--cccCCCCCCCCCCchhhhhhhhhcchhccCCCCCCc
Confidence 344678889976645333 24555 4555667789999992 346688888 8885 2345566678866
Q ss_pred CCCCCCCCCCCCC
Q 021987 94 PLGSHAHNHGVPT 106 (304)
Q Consensus 94 p~gs~p~~~~~~~ 106 (304)
...-||+..-+++
T Consensus 150 ~tagiPhpaiv~P 162 (421)
T KOG3248|consen 150 HTAGIPHPAIVTP 162 (421)
T ss_pred cccCCCCccccCC
Confidence 6666666444333
No 14
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=33.48 E-value=31 Score=33.99 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHhhhhHH-HHHhHHhhhcC
Q 021987 277 NERELKRERRKQSNRES-ARRSRLRKQVK 304 (304)
Q Consensus 277 ~~~~~~r~~r~~snres-arrsr~rkq~~ 304 (304)
.+.+.|+.|||.-+|.. |-|=|.||.+|
T Consensus 221 ~~~~~~~~~rkr~qnk~AAtRYRqKkRae 249 (294)
T KOG4571|consen 221 YKTPEKKLRRKRQQNKAAATRYRQKKRAE 249 (294)
T ss_pred CCCchHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44555666777667776 88888888765
No 15
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=30.14 E-value=1.9e+02 Score=28.52 Aligned_cols=56 Identities=30% Similarity=0.527 Sum_probs=25.7
Q ss_pred CCCCCCCCCCCCCCCccCCCCCCCCCCCCCc---cccc-cCC---ccccCCCCCCCCCCCCCCCCC
Q 021987 48 YYNSPIASGHAPQPYMWGPAQPMMPPYGAPY---AAIY-STG---GVYAHPAVPLGSHAHNHGVPT 106 (304)
Q Consensus 48 ~f~s~VAs~p~pHPYMWGp~QpmmPPYGtPY---~AmY-p~G---GvYAHP~mp~gs~p~~~~~~~ 106 (304)
|.-+.|.++.-+.+=|=|. |.||-|-|. +.+| |++ |.|.-|-||+|.-+-....|+
T Consensus 140 ~gmpp~p~~~~~p~gmp~~---~ppp~g~pp~~~pgv~mp~~g~pg~~~pp~mpi~~g~p~~~p~p 202 (341)
T KOG2893|consen 140 YGMPPMPSGMMPPRGMPGA---YPPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGHGPPGGPPMP 202 (341)
T ss_pred cCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCccccCCCCCCCCCCCCcCcCCCCCCCCCCCC
Confidence 3333444444444444443 345555431 1222 333 356677777654444433333
No 16
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=29.91 E-value=54 Score=32.05 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=17.6
Q ss_pred hHHHHHHHHHH-hhhhHHHHHhHHhhhc
Q 021987 277 NERELKRERRK-QSNRESARRSRLRKQV 303 (304)
Q Consensus 277 ~~~~~~r~~r~-~snresarrsr~rkq~ 303 (304)
.|+|.||+|.+ +-+|+-|+|.|++||.
T Consensus 69 tEee~~Krke~q~~~r~eakrkr~e~~~ 96 (284)
T PF07897_consen 69 TEEEWRKRKEMQSLRRLEAKRKRSEKQR 96 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444444 4578999999999963
No 17
>PLN03162 golden-2 like transcription factor; Provisional
Probab=25.08 E-value=75 Score=32.91 Aligned_cols=8 Identities=13% Similarity=-0.118 Sum_probs=6.2
Q ss_pred CCCCccCC
Q 021987 59 PQPYMWGP 66 (304)
Q Consensus 59 pHPYMWGp 66 (304)
-||||||+
T Consensus 395 ~h~~~~~~ 402 (526)
T PLN03162 395 QHPATGYD 402 (526)
T ss_pred hcccccCc
Confidence 48888887
No 18
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=24.61 E-value=2.3e+02 Score=28.82 Aligned_cols=9 Identities=33% Similarity=0.615 Sum_probs=5.4
Q ss_pred CCCCCccCC
Q 021987 58 APQPYMWGP 66 (304)
Q Consensus 58 ~pHPYMWGp 66 (304)
++.|++|+.
T Consensus 410 ~~~p~~~~~ 418 (562)
T TIGR01628 410 NGQPLGWPR 418 (562)
T ss_pred CCCCCCCCC
Confidence 345677764
No 19
>PF04644 Motilin_ghrelin: Motilin/ghrelin; InterPro: IPR006738 Motilin is a gastrointestinal regulatory polypeptide produced by motilin cells in the duodenal epithelium. It is released into the general circulation at about 100-min intervals during the inter-digestive state and is the most important factor in controlling the inter-digestive migrating contractions. Motilin also stimulates endogenous release of the endocrine pancreas []. This domain is also found in ghrelin, a growth hormone secretagogue synthesised by endocrine cells in the stomach. Ghrelin stimulates growth hormone secretagogue receptors in the pituitary. These receptors are distinct from the growth hormone-releasing hormone receptors, and thus provide a means of controlling pituitary growth hormone release by the gastrointestinal system [].; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LBJ_A.
Probab=24.47 E-value=66 Score=21.65 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhhhHHHH
Q 021987 279 RELKRERRKQSNRESAR 295 (304)
Q Consensus 279 ~~~~r~~r~~snresar 295 (304)
-|+.|..||++|+..++
T Consensus 7 ~e~qr~QekE~nk~~kK 23 (28)
T PF04644_consen 7 SEHQRMQEKERNKGQKK 23 (28)
T ss_dssp HHHHHHHHHHHHHH---
T ss_pred hHHHHHHHHHhccCccc
Confidence 46677788999988776
Done!