Query 021987
Match_columns 304
No_of_seqs 132 out of 201
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 12:18:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 98.1 6.9E-07 2.4E-11 65.1 2.1 22 282-303 1-22 (55)
2 2dgc_A Protein (GCN4); basic d 97.2 0.00011 3.6E-09 54.8 1.3 24 277-304 8-31 (63)
3 2wt7_A Proto-oncogene protein 97.1 0.00021 7.3E-09 52.7 2.3 23 281-303 1-23 (63)
4 3a5t_A Transcription factor MA 96.6 0.00097 3.3E-08 54.7 3.0 29 275-303 30-58 (107)
5 1jnm_A Proto-oncogene C-JUN; B 96.0 0.0026 8.9E-08 46.6 2.1 22 282-303 1-22 (62)
6 1t2k_D Cyclic-AMP-dependent tr 95.8 0.0035 1.2E-07 45.7 2.1 22 282-303 1-22 (61)
7 1ci6_A Transcription factor AT 93.7 0.015 5.2E-07 43.0 0.6 23 281-303 1-23 (63)
8 1gd2_E Transcription factor PA 83.0 0.53 1.8E-05 35.8 1.9 20 284-303 10-29 (70)
9 1skn_P DNA-binding domain of S 70.2 3.9 0.00013 32.8 3.7 27 277-303 57-83 (92)
10 1gu4_A CAAT/enhancer binding p 55.4 5.3 0.00018 30.8 1.9 17 286-302 19-35 (78)
11 1hjb_A Ccaat/enhancer binding 53.8 5.9 0.0002 31.1 1.9 20 283-302 16-35 (87)
12 2wt7_B Transcription factor MA 49.2 12 0.00041 29.7 3.0 28 276-303 21-48 (90)
13 3sjd_D Golgi to ER traffic pro 34.4 38 0.0013 24.1 3.3 31 271-301 12-42 (46)
14 3zs9_C Golgi to ER traffic pro 31.9 37 0.0013 23.3 2.9 28 274-301 5-32 (38)
15 2kz5_A Transcription factor NF 22.0 26 0.0009 28.0 0.8 25 278-302 62-86 (91)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=98.14 E-value=6.9e-07 Score=65.10 Aligned_cols=22 Identities=55% Similarity=0.638 Sum_probs=20.7
Q ss_pred HHHHHHhhhhHHHHHhHHhhhc
Q 021987 282 KRERRKQSNRESARRSRLRKQV 303 (304)
Q Consensus 282 ~r~~r~~snresarrsr~rkq~ 303 (304)
||+||+++|||||+|||.||++
T Consensus 1 kr~rR~~~NResA~rSR~RKk~ 22 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKE 22 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHhhHHHHHHHHHHHHH
Confidence 5899999999999999999986
No 2
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=97.16 E-value=0.00011 Score=54.83 Aligned_cols=24 Identities=54% Similarity=0.709 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHhhhhHHHHHhHHhhhcC
Q 021987 277 NERELKRERRKQSNRESARRSRLRKQVK 304 (304)
Q Consensus 277 ~~~~~~r~~r~~snresarrsr~rkq~~ 304 (304)
|+.+.||+| |||+|||||.|||++
T Consensus 8 d~~~~KR~r----NreAArrsR~RK~~~ 31 (63)
T 2dgc_A 8 DPAALKRAR----NTEAARRSRARKLQR 31 (63)
T ss_dssp ---CHHHHH----HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH----hHHHHHHHHHHHHHH
Confidence 444444444 999999999999863
No 3
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=97.08 E-value=0.00021 Score=52.75 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=21.2
Q ss_pred HHHHHHHhhhhHHHHHhHHhhhc
Q 021987 281 LKRERRKQSNRESARRSRLRKQV 303 (304)
Q Consensus 281 ~~r~~r~~snresarrsr~rkq~ 303 (304)
+||+||++.||++|+|+|.||++
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~ 23 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRE 23 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHH
Confidence 37999999999999999999985
No 4
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=96.64 E-value=0.00097 Score=54.74 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHhHHhhhc
Q 021987 275 IQNERELKRERRKQSNRESARRSRLRKQV 303 (304)
Q Consensus 275 ~~~~~~~~r~~r~~snresarrsr~rkq~ 303 (304)
..+..++|.+||+++||+.|+++|.||++
T Consensus 30 ~~e~~~lK~~RR~lKNR~yAq~CR~rk~~ 58 (107)
T 3a5t_A 30 KEEIIQLKQRRRTLKNRGYAASCRVKRVT 58 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45779999999999999999999999975
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=96.03 E-value=0.0026 Score=46.60 Aligned_cols=22 Identities=45% Similarity=0.548 Sum_probs=19.4
Q ss_pred HHHHHHhhhhHHHHHhHHhhhc
Q 021987 282 KRERRKQSNRESARRSRLRKQV 303 (304)
Q Consensus 282 ~r~~r~~snresarrsr~rkq~ 303 (304)
|++||++.||++|+|+|.||++
T Consensus 1 K~errr~rNr~AA~k~R~rKk~ 22 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLE 22 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHH
Confidence 4678888899999999999975
No 6
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=95.84 E-value=0.0035 Score=45.69 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=20.3
Q ss_pred HHHHHHhhhhHHHHHhHHhhhc
Q 021987 282 KRERRKQSNRESARRSRLRKQV 303 (304)
Q Consensus 282 ~r~~r~~snresarrsr~rkq~ 303 (304)
||+||.+.||++|+|+|.||++
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~ 22 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKV 22 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHH
Confidence 5899999999999999999975
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=93.71 E-value=0.015 Score=42.95 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=15.0
Q ss_pred HHHHHHHhhhhHHHHHhHHhhhc
Q 021987 281 LKRERRKQSNRESARRSRLRKQV 303 (304)
Q Consensus 281 ~~r~~r~~snresarrsr~rkq~ 303 (304)
+|++|+++.||..|+|+|.||.+
T Consensus 1 ~k~~rKr~rNr~AA~R~R~KKk~ 23 (63)
T 1ci6_A 1 MKKLKKMEQNKTAATRYRQKKRA 23 (63)
T ss_dssp -------CCHHHHHHHHHHHHHH
T ss_pred CchHhHHHHhHHHHHHHHHHHHH
Confidence 47899999999999999999875
No 8
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=82.98 E-value=0.53 Score=35.76 Aligned_cols=20 Identities=40% Similarity=0.514 Sum_probs=18.5
Q ss_pred HHHHhhhhHHHHHhHHhhhc
Q 021987 284 ERRKQSNRESARRSRLRKQV 303 (304)
Q Consensus 284 ~~r~~snresarrsr~rkq~ 303 (304)
.||+..||+++|..|.||++
T Consensus 10 ~kR~~qNR~AQRafReRK~~ 29 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKED 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999986
No 9
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=70.22 E-value=3.9 Score=32.82 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHhhhhHHHHHhHHhhhc
Q 021987 277 NERELKRERRKQSNRESARRSRLRKQV 303 (304)
Q Consensus 277 ~~~~~~r~~r~~snresarrsr~rkq~ 303 (304)
....+|..||+..||.-|+|.|.||-.
T Consensus 57 Ql~~ir~~RRR~KNr~AA~~CRkrK~~ 83 (92)
T 1skn_P 57 QRQLIRKIRRRGKNKVAARTCRQRRTD 83 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345667789999999999999999853
No 10
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=55.35 E-value=5.3 Score=30.75 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=13.7
Q ss_pred HHhhhhHHHHHhHHhhh
Q 021987 286 RKQSNRESARRSRLRKQ 302 (304)
Q Consensus 286 r~~snresarrsr~rkq 302 (304)
|...|.+.|||||.++.
T Consensus 19 rR~rNN~AakrSR~krk 35 (78)
T 1gu4_A 19 RRERNNIAVRKSRDKAK 35 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 35679999999998764
No 11
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=53.79 E-value=5.9 Score=31.11 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=14.9
Q ss_pred HHHHHhhhhHHHHHhHHhhh
Q 021987 283 RERRKQSNRESARRSRLRKQ 302 (304)
Q Consensus 283 r~~r~~snresarrsr~rkq 302 (304)
...|...|.+.|||||.++.
T Consensus 16 Y~~rR~rNN~AarrSR~krk 35 (87)
T 1hjb_A 16 YKIRRERNNIAVRKSRDKAK 35 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 34445679999999997654
No 12
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=49.24 E-value=12 Score=29.70 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHhhhhHHHHHhHHhhhc
Q 021987 276 QNERELKRERRKQSNRESARRSRLRKQV 303 (304)
Q Consensus 276 ~~~~~~~r~~r~~snresarrsr~rkq~ 303 (304)
....++|..||...||..|.-.|.||..
T Consensus 21 eev~~lKq~RRtlKNRgyAq~CR~Kr~~ 48 (90)
T 2wt7_B 21 DEVIRLKQKRRTLKNRGYAQSCRYKRVQ 48 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3557899999999999999999988854
No 13
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=34.41 E-value=38 Score=24.07 Aligned_cols=31 Identities=35% Similarity=0.413 Sum_probs=21.1
Q ss_pred CcchhhhHHHHHHHHHHhhhhHHHHHhHHhh
Q 021987 271 PETWIQNERELKRERRKQSNRESARRSRLRK 301 (304)
Q Consensus 271 ~~~~~~~~~~~~r~~r~~snresarrsr~rk 301 (304)
+|.-.++.+.++|+||...=+...--+||-|
T Consensus 12 ~~lsa~EkaRLrRERR~aKi~~G~assRLNk 42 (46)
T 3sjd_D 12 SELTEAEKRRLLRERRQKKFSNGGASSRLNK 42 (46)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 4555677888999999888777655666654
No 14
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=31.89 E-value=37 Score=23.27 Aligned_cols=28 Identities=36% Similarity=0.425 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHhHHhh
Q 021987 274 WIQNERELKRERRKQSNRESARRSRLRK 301 (304)
Q Consensus 274 ~~~~~~~~~r~~r~~snresarrsr~rk 301 (304)
-..+.+.++|+||+..=+...--+||.|
T Consensus 5 s~~ekaRlrRERR~aKi~~Ggas~RLnk 32 (38)
T 3zs9_C 5 TEAEKRRLLRERRQKKFSNGGASSRLNK 32 (38)
T ss_dssp CHHHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccChHHHHHH
Confidence 3456788888888877666555556654
No 15
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=22.01 E-value=26 Score=28.02 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhhhHHHHHhHHhhh
Q 021987 278 ERELKRERRKQSNRESARRSRLRKQ 302 (304)
Q Consensus 278 ~~~~~r~~r~~snresarrsr~rkq 302 (304)
...+|..||...||.-|++=|.||-
T Consensus 62 l~lIrdiRRRgKNKvAAqnCRKRKl 86 (91)
T 2kz5_A 62 LALVRDIRRRGKNKVAAQNYRKRKL 86 (91)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3456778999999999999998874
Done!