Query 021987
Match_columns 304
No_of_seqs 132 out of 201
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 12:18:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021987.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021987hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sknp_ a.37.1.1 (P:) Skn-1 {C 13.0 70 0.0051 22.9 3.0 23 280-302 46-68 (74)
2 d1qhda2 b.19.1.1 (A:149-332) v 9.8 27 0.002 28.7 -0.2 22 70-91 146-169 (184)
3 d2alaa2 f.10.1.1 (A:1-292) Fus 8.9 47 0.0034 29.0 1.0 9 60-68 85-93 (292)
4 d1k1va_ a.37.1.1 (A:) Mafg {Mo 6.6 1.1E+02 0.0077 19.7 1.7 15 277-291 25-39 (41)
5 d1aiwa_ b.72.2.1 (A:) Cellulos 4.7 98 0.0071 21.3 0.6 11 24-34 5-15 (62)
6 d1bdya_ b.7.1.1 (A:) Domain fr 4.2 1.4E+02 0.01 21.3 1.2 15 68-82 15-31 (123)
7 d1xdna_ d.142.2.4 (A:) RNA edi 3.5 1.3E+02 0.0093 25.9 0.4 11 85-95 111-121 (265)
8 d2a7la1 d.20.1.1 (A:1-117) Ubi 3.3 1.6E+02 0.012 20.9 0.8 37 60-103 33-69 (117)
9 d1jjva_ c.37.1.1 (A:) Dephosph 2.8 2.7E+02 0.02 20.8 1.7 24 278-302 136-159 (205)
10 d1v9da_ a.207.1.1 (A:) Diaphan 2.8 4.1E+02 0.03 21.7 3.0 17 131-147 125-141 (332)
No 1
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=13.01 E-value=70 Score=22.89 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=19.2
Q ss_pred HHHHHHHHhhhhHHHHHhHHhhh
Q 021987 280 ELKRERRKQSNRESARRSRLRKQ 302 (304)
Q Consensus 280 ~~~r~~r~~snresarrsr~rkq 302 (304)
-.+-.||+-.|+--|++=|.||-
T Consensus 46 lirDIRRRGKNKvAAqnCRKRKl 68 (74)
T d1sknp_ 46 LIRKIRRRGKNKVAARTCRQRRT 68 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHhhh
Confidence 34567888999999999999984
No 2
>d1qhda2 b.19.1.1 (A:149-332) vp6, the major capsid protein of group A rotavirus {Bovine rotavirus [TaxId: 10927]}
Probab=9.82 E-value=27 Score=28.72 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=18.1
Q ss_pred CC-CCCCCCcc-ccccCCccccCC
Q 021987 70 MM-PPYGAPYA-AIYSTGGVYAHP 91 (304)
Q Consensus 70 mm-PPYGtPY~-AmYp~GGvYAHP 91 (304)
|| ||-=|||+ ++||.||.|.|=
T Consensus 146 liRP~~mt~~v~~lfP~~~Pf~~~ 169 (184)
T d1qhda2 146 LMRPPNMTPAVAALFPNAQPFEHH 169 (184)
T ss_dssp EECCSSCCHHHHTTSCSSSCCCSE
T ss_pred EecCccccHHHHHhCcCCCCccce
Confidence 44 77778988 999999999873
No 3
>d2alaa2 f.10.1.1 (A:1-292) Fusion glycoprotein E1 {Semliki forest virus [TaxId: 11033]}
Probab=8.91 E-value=47 Score=29.01 Aligned_cols=9 Identities=56% Similarity=1.302 Sum_probs=7.1
Q ss_pred CCCccCCCC
Q 021987 60 QPYMWGPAQ 68 (304)
Q Consensus 60 HPYMWGp~Q 68 (304)
.|||||..|
T Consensus 85 YPfmWGGAy 93 (292)
T d2alaa2 85 YPFMWGGAY 93 (292)
T ss_dssp SCSCCCCCC
T ss_pred cccccccee
Confidence 699999843
No 4
>d1k1va_ a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.59 E-value=1.1e+02 Score=19.66 Aligned_cols=15 Identities=40% Similarity=0.514 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHhhhh
Q 021987 277 NERELKRERRKQSNR 291 (304)
Q Consensus 277 ~~~~~~r~~r~~snr 291 (304)
+..++|.+||-..||
T Consensus 25 ev~~lKqrRRTLKNR 39 (41)
T d1k1va_ 25 EIIQLKQRRRTLKNR 39 (41)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhhcC
Confidence 456788888888887
No 5
>d1aiwa_ b.72.2.1 (A:) Cellulose-binding domain of endoglucanase Z {Erwinia chrysanthemi [TaxId: 556]}
Probab=4.71 E-value=98 Score=21.27 Aligned_cols=11 Identities=27% Similarity=0.963 Sum_probs=8.2
Q ss_pred CCcCcCCchhh
Q 021987 24 GNIHMYTDWAA 34 (304)
Q Consensus 24 ~~~~vyPDWsa 34 (304)
..+.+||+|.+
T Consensus 5 ~~~~~YP~w~~ 15 (62)
T d1aiwa_ 5 ANANVYPNWVS 15 (62)
T ss_dssp SSSCBTTCCSB
T ss_pred ccccccCCCCc
Confidence 45678999985
No 6
>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.17 E-value=1.4e+02 Score=21.30 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=8.5
Q ss_pred CCCCCCCCC--Cccccc
Q 021987 68 QPMMPPYGA--PYAAIY 82 (304)
Q Consensus 68 QpmmPPYGt--PY~AmY 82 (304)
+|+-++.|+ ||+.+|
T Consensus 15 ~~~~~~~~~~dPY~~v~ 31 (123)
T d1bdya_ 15 GSLQAEDDASQPFCAVK 31 (123)
T ss_dssp CTTCCCCCSCCCEEEEE
T ss_pred ccCCCCCCCCCCEEEEE
Confidence 345555666 666555
No 7
>d1xdna_ d.142.2.4 (A:) RNA editing ligase MP52 {Trypanosoma brucei [TaxId: 5691]}
Probab=3.46 E-value=1.3e+02 Score=25.87 Aligned_cols=11 Identities=55% Similarity=1.032 Sum_probs=10.3
Q ss_pred CccccCCCCCC
Q 021987 85 GGVYAHPAVPL 95 (304)
Q Consensus 85 GGvYAHP~mp~ 95 (304)
||-|.||.+|.
T Consensus 111 Gg~Y~hp~v~~ 121 (265)
T d1xdna_ 111 GAKYKHPLVPK 121 (265)
T ss_dssp EEECCCTTSCC
T ss_pred ccccCCCcccc
Confidence 89999999988
No 8
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.30 E-value=1.6e+02 Score=20.91 Aligned_cols=37 Identities=14% Similarity=0.071 Sum_probs=24.2
Q ss_pred CCCccCCCCCCCCCCCCCccccccCCccccCCCCCCCCCCCCCC
Q 021987 60 QPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHG 103 (304)
Q Consensus 60 HPYMWGp~QpmmPPYGtPY~AmYp~GGvYAHP~mp~gs~p~~~~ 103 (304)
..|-|-. - +.-|-||||. ||+|--=-.=+..|||.++
T Consensus 33 ~l~~w~~-~-i~Gp~~tpy~-----gg~f~~~i~fp~~YP~~pP 69 (117)
T d2a7la1 33 SITQWIV-D-MEGAPGTLYE-----GEKFQLLFKFSSRYPFDSP 69 (117)
T ss_dssp SCEEEEE-E-EECCTTSTTT-----TCEEEEEEEECTTTTTSCC
T ss_pred CceEEEE-E-EeCCCCcccc-----CCeeeEEEecCcccccCCC
Confidence 5788966 1 3368899996 7777544333446777654
No 9
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}
Probab=2.82 E-value=2.7e+02 Score=20.80 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhhhHHHHHhHHhhh
Q 021987 278 ERELKRERRKQSNRESARRSRLRKQ 302 (304)
Q Consensus 278 ~~~~~r~~r~~snresarrsr~rkq 302 (304)
.+..|+.+|.--++|-+.+ |++.|
T Consensus 136 ~r~~R~~~R~~~s~e~~~~-~~~~Q 159 (205)
T d1jjva_ 136 TQLARSAQRDNNNFEQIQR-IMNSQ 159 (205)
T ss_dssp HHHHHHC-----CHHHHHH-HHHHS
T ss_pred HHHHHHHhcCCchHHHHHH-HHHhC
Confidence 3444444454456666665 56555
No 10
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.78 E-value=4.1e+02 Score=21.75 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=5.8
Q ss_pred hhhhcccCCcccccCCC
Q 021987 131 AKKLKGLDGLAMSIGNA 147 (304)
Q Consensus 131 ~Kk~Kg~~Glams~G~g 147 (304)
.++||.++++-..+||=
T Consensus 125 S~~l~~~L~~iL~~GN~ 141 (332)
T d1v9da_ 125 SENFSSLLELTLLVGNY 141 (332)
T ss_dssp CHHHHHCC---------
T ss_pred ChhHHHHHHHHHHhcch
Confidence 46777888765556664
Done!