Query 021988
Match_columns 304
No_of_seqs 301 out of 1421
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 12:19:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021988.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021988hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a25_A Ubiquitin ligase SIAH1; 100.0 1.5E-43 5.3E-48 311.3 12.9 189 106-297 1-191 (193)
2 3hcs_A TNF receptor-associated 99.8 7.9E-22 2.7E-26 168.9 5.8 122 43-171 8-136 (170)
3 3hct_A TNF receptor-associated 99.6 1.1E-16 3.7E-21 129.2 4.8 93 45-140 10-109 (118)
4 3knv_A TNF receptor-associated 99.6 1.4E-16 4.6E-21 132.9 0.4 91 45-138 23-130 (141)
5 1rmd_A RAG1; V(D)J recombinati 99.6 1.7E-16 5.8E-21 127.4 -0.1 91 47-140 17-115 (116)
6 3ztg_A E3 ubiquitin-protein li 99.0 9.5E-11 3.3E-15 89.6 3.8 69 46-116 6-85 (92)
7 2egp_A Tripartite motif-contai 99.0 9.5E-11 3.2E-15 86.8 1.0 51 45-97 4-65 (79)
8 1t1h_A Gspef-atpub14, armadill 99.0 9.4E-11 3.2E-15 86.9 1.0 62 48-111 3-72 (78)
9 2ecv_A Tripartite motif-contai 98.9 1.8E-10 6.2E-15 86.1 1.3 51 45-97 11-71 (85)
10 2kr4_A Ubiquitin conjugation f 98.9 7.4E-10 2.5E-14 84.1 3.0 63 47-111 8-77 (85)
11 2ysl_A Tripartite motif-contai 98.9 9.8E-10 3.3E-14 80.1 3.4 51 45-97 12-69 (73)
12 1wgm_A Ubiquitin conjugation f 98.9 1E-09 3.5E-14 85.6 3.5 64 47-112 16-87 (98)
13 1jm7_B BARD1, BRCA1-associated 98.8 3.7E-10 1.3E-14 90.5 0.6 67 45-111 14-84 (117)
14 2ecw_A Tripartite motif-contai 98.8 3.1E-10 1.1E-14 84.8 -0.2 59 45-105 11-82 (85)
15 2csy_A Zinc finger protein 183 98.8 1.8E-09 6.1E-14 80.7 3.7 60 47-108 9-74 (81)
16 2kre_A Ubiquitin conjugation f 98.8 9.6E-10 3.3E-14 86.1 1.9 63 47-111 23-92 (100)
17 2y43_A E3 ubiquitin-protein li 98.8 5.2E-10 1.8E-14 86.8 0.2 68 44-111 13-86 (99)
18 1bor_A Transcription factor PM 98.8 3E-09 1E-13 74.2 3.5 46 50-97 3-49 (56)
19 2ecy_A TNF receptor-associated 98.8 3.1E-09 1.1E-13 76.2 3.4 51 45-97 7-62 (66)
20 3fl2_A E3 ubiquitin-protein li 98.8 6.2E-10 2.1E-14 89.9 -0.7 64 45-110 44-116 (124)
21 2djb_A Polycomb group ring fin 98.7 4.5E-09 1.5E-13 76.7 3.0 51 45-97 7-62 (72)
22 4ayc_A E3 ubiquitin-protein li 98.7 1.5E-09 5.3E-14 89.4 0.3 58 49-108 49-111 (138)
23 2ysj_A Tripartite motif-contai 98.7 3.4E-09 1.2E-13 75.2 2.0 45 45-91 12-63 (63)
24 2yur_A Retinoblastoma-binding 98.7 4.6E-09 1.6E-13 77.2 2.4 49 46-96 8-63 (74)
25 1e4u_A Transcriptional repress 98.7 4.8E-09 1.6E-13 78.4 2.4 51 47-97 5-62 (78)
26 1z6u_A NP95-like ring finger p 98.7 1.5E-09 5E-14 91.1 -0.6 64 46-111 71-143 (150)
27 2ckl_B Ubiquitin ligase protei 98.7 3.8E-09 1.3E-13 89.4 1.7 68 45-112 46-121 (165)
28 2ckl_A Polycomb group ring fin 98.7 3E-09 1E-13 83.8 0.7 64 47-110 9-82 (108)
29 3lrq_A E3 ubiquitin-protein li 98.7 1E-09 3.5E-14 85.6 -2.4 64 45-108 14-84 (100)
30 2d8t_A Dactylidin, ring finger 98.6 1.1E-08 3.8E-13 74.4 2.6 46 49-96 11-60 (71)
31 3l11_A E3 ubiquitin-protein li 98.6 9.3E-09 3.2E-13 81.8 2.2 47 48-96 10-61 (115)
32 2ea6_A Ring finger protein 4; 98.6 9.1E-09 3.1E-13 73.8 1.7 49 46-96 8-67 (69)
33 2c2l_A CHIP, carboxy terminus 98.6 1.3E-08 4.4E-13 92.1 2.9 63 48-112 203-273 (281)
34 2ct2_A Tripartite motif protei 98.6 2.2E-08 7.4E-13 75.4 2.7 51 45-97 7-68 (88)
35 1jm7_A BRCA1, breast cancer ty 98.6 1.6E-09 5.6E-14 85.4 -3.8 48 48-97 16-70 (112)
36 2yu4_A E3 SUMO-protein ligase 98.5 2E-08 6.8E-13 77.5 1.9 64 49-112 3-81 (94)
37 2ecj_A Tripartite motif-contai 98.5 3.1E-08 1.1E-12 68.7 2.7 45 45-91 7-58 (58)
38 2f42_A STIP1 homology and U-bo 98.5 2.6E-08 9E-13 85.8 2.1 63 48-111 101-170 (179)
39 3ng2_A RNF4, snurf, ring finge 98.5 2.8E-08 9.5E-13 71.8 0.6 47 49-97 6-63 (71)
40 1g25_A CDK-activating kinase a 98.4 3.6E-08 1.2E-12 70.3 0.3 44 52-97 2-55 (65)
41 4ic3_A E3 ubiquitin-protein li 98.4 2.2E-08 7.7E-13 73.7 -1.1 47 48-97 19-67 (74)
42 2ep4_A Ring finger protein 24; 98.4 1.3E-07 4.5E-12 69.0 2.6 51 47-97 9-64 (74)
43 2ecg_A Baculoviral IAP repeat- 98.4 2.3E-08 7.8E-13 73.8 -1.7 47 48-97 20-68 (75)
44 2ect_A Ring finger protein 126 98.4 2.9E-07 9.9E-12 67.8 4.1 51 47-97 9-64 (78)
45 2xeu_A Ring finger protein 4; 98.3 6.1E-08 2.1E-12 68.4 0.1 44 52-97 2-56 (64)
46 2ecn_A Ring finger protein 141 98.3 8.1E-08 2.8E-12 69.4 0.5 49 47-97 9-60 (70)
47 1iym_A EL5; ring-H2 finger, ub 98.3 2.3E-07 8E-12 63.6 2.7 45 50-96 2-54 (55)
48 2ea5_A Cell growth regulator w 98.3 3.9E-07 1.3E-11 66.1 3.4 47 48-97 10-58 (68)
49 1x4j_A Ring finger protein 38; 98.3 4.9E-07 1.7E-11 66.2 3.5 47 49-97 19-72 (75)
50 2ecm_A Ring finger and CHY zin 98.2 3E-07 1E-11 62.9 1.9 43 52-96 4-54 (55)
51 1chc_A Equine herpes virus-1 r 98.2 3.7E-07 1.3E-11 65.4 2.3 44 52-97 4-52 (68)
52 2kiz_A E3 ubiquitin-protein li 98.1 8.4E-07 2.9E-11 63.7 2.6 50 48-97 9-63 (69)
53 4ap4_A E3 ubiquitin ligase RNF 98.1 3.9E-07 1.3E-11 73.2 0.1 45 51-97 5-60 (133)
54 3htk_C E3 SUMO-protein ligase 98.1 5.5E-07 1.9E-11 81.6 0.9 64 46-111 174-249 (267)
55 2yho_A E3 ubiquitin-protein li 98.1 2.7E-07 9.3E-12 68.9 -1.2 46 49-97 14-61 (79)
56 2l0b_A E3 ubiquitin-protein li 98.1 8.5E-07 2.9E-11 67.6 1.5 45 50-96 37-88 (91)
57 1v87_A Deltex protein 2; ring- 98.0 1.8E-06 6.3E-11 68.1 1.8 43 53-97 25-94 (114)
58 3t6p_A Baculoviral IAP repeat- 97.9 2.2E-06 7.5E-11 81.0 1.0 47 48-97 290-338 (345)
59 2vje_A E3 ubiquitin-protein li 97.8 3.5E-06 1.2E-10 60.1 0.5 44 52-97 7-57 (64)
60 2y1n_A E3 ubiquitin-protein li 97.8 6.1E-06 2.1E-10 78.9 1.4 46 50-97 329-379 (389)
61 2vje_B MDM4 protein; proto-onc 97.7 4.6E-06 1.6E-10 59.3 0.2 43 53-97 7-56 (63)
62 2yre_A F-box only protein 30; 97.7 6.5E-06 2.2E-10 63.9 0.8 54 110-166 36-89 (100)
63 2yuc_A TNF receptor-associated 97.7 2.4E-05 8.2E-10 57.3 3.8 49 110-165 15-64 (76)
64 4ap4_A E3 ubiquitin ligase RNF 97.7 5.7E-06 2E-10 66.2 -0.0 48 50-97 69-125 (133)
65 2ecl_A Ring-box protein 2; RNF 97.7 1.5E-05 5E-10 59.4 2.2 45 52-96 14-75 (81)
66 1wim_A KIAA0161 protein; ring 97.6 7.7E-06 2.6E-10 62.5 -0.9 41 52-94 4-61 (94)
67 2yre_A F-box only protein 30; 97.5 2.9E-05 9.8E-10 60.2 1.6 57 87-145 39-98 (100)
68 2bay_A PRE-mRNA splicing facto 97.2 6.5E-05 2.2E-09 53.1 0.4 45 53-97 3-50 (61)
69 3dpl_R Ring-box protein 1; ubi 97.1 0.00012 4.2E-09 57.5 1.1 45 53-97 37-101 (106)
70 4a0k_B E3 ubiquitin-protein li 97.0 0.00011 3.8E-09 58.8 0.0 43 54-96 49-111 (117)
71 3hcs_A TNF receptor-associated 96.8 0.0002 6.9E-09 60.3 0.4 51 108-166 107-158 (170)
72 3vk6_A E3 ubiquitin-protein li 96.5 0.0014 4.8E-08 50.7 2.8 79 55-171 3-88 (101)
73 2yuc_A TNF receptor-associated 96.4 0.00093 3.2E-08 48.6 1.4 42 127-171 2-43 (76)
74 2d9k_A FLN29 gene product; zin 96.3 0.00033 1.1E-08 51.0 -1.5 49 110-166 16-64 (75)
75 2ct0_A Non-SMC element 1 homol 95.2 0.017 5.9E-07 42.2 3.8 44 53-97 15-64 (74)
76 2d8s_A Cellular modulator of i 94.7 0.014 4.7E-07 43.2 2.3 45 52-96 14-69 (80)
77 3k1l_B Fancl; UBC, ring, RWD, 94.1 0.011 3.8E-07 55.5 0.7 46 51-96 306-372 (381)
78 2cs3_A Protein C14ORF4, MY039 92.0 0.32 1.1E-05 35.9 5.6 33 50-82 12-47 (93)
79 3hct_A TNF receptor-associated 91.5 0.085 2.9E-06 41.3 2.3 64 102-171 44-110 (118)
80 2d9k_A FLN29 gene product; zin 91.0 0.13 4.5E-06 36.8 2.7 33 128-164 3-36 (75)
81 1rmd_A RAG1; V(D)J recombinati 89.9 0.29 9.9E-06 37.9 4.1 75 86-166 24-111 (116)
82 2yt9_A Zinc finger-containing 89.0 0.23 7.7E-06 36.0 2.7 46 121-170 41-91 (95)
83 2eod_A TNF receptor-associated 88.9 0.13 4.3E-06 35.3 1.1 50 111-168 10-61 (66)
84 2jun_A Midline-1; B-BOX, TRIM, 88.8 0.099 3.4E-06 39.6 0.5 32 52-83 2-35 (101)
85 1wjp_A Zinc finger protein 295 84.4 0.72 2.5E-05 34.3 3.3 37 130-170 58-95 (107)
86 2dlq_A GLI-kruppel family memb 82.0 1 3.4E-05 34.0 3.3 106 52-170 6-120 (124)
87 2ee8_A Protein ODD-skipped-rel 80.4 2.7 9.2E-05 30.8 5.2 26 140-169 72-98 (106)
88 2rpc_A Zinc finger protein ZIC 79.3 2.5 8.7E-05 33.3 5.0 115 48-169 20-147 (155)
89 2dlq_A GLI-kruppel family memb 78.7 2.1 7.2E-05 32.1 4.1 77 86-170 8-92 (124)
90 2jne_A Hypothetical protein YF 78.6 0.57 1.9E-05 35.8 0.8 38 54-96 33-72 (101)
91 2dmi_A Teashirt homolog 3; zin 78.6 3.5 0.00012 30.7 5.4 39 128-170 66-106 (115)
92 2cup_A Skeletal muscle LIM-pro 77.7 0.84 2.9E-05 34.1 1.5 45 52-96 32-77 (101)
93 2dmd_A Zinc finger protein 64, 76.8 0.95 3.3E-05 32.6 1.6 27 140-170 63-90 (96)
94 1vyx_A ORF K3, K3RING; zinc-bi 75.9 1.2 4.2E-05 30.6 1.9 46 51-96 4-58 (60)
95 1wfh_A Zinc finger (AN1-like) 75.6 6.6 0.00022 27.6 5.5 40 54-93 16-55 (64)
96 2gli_A Protein (five-finger GL 74.0 4.9 0.00017 31.4 5.3 13 54-66 4-16 (155)
97 2kmk_A Zinc finger protein GFI 73.9 2.1 7.1E-05 29.6 2.7 73 87-167 3-80 (82)
98 2j7j_A Transcription factor II 71.7 2.4 8.2E-05 29.4 2.6 75 89-168 7-85 (85)
99 1weo_A Cellulose synthase, cat 68.5 5.5 0.00019 29.9 3.9 43 54-96 17-69 (93)
100 2eod_A TNF receptor-associated 67.3 2.5 8.7E-05 28.4 1.9 31 134-169 3-33 (66)
101 1z60_A TFIIH basal transcripti 67.2 2.8 9.4E-05 29.0 2.0 37 55-91 17-58 (59)
102 1llm_C Chimera of ZIF23-GCN4; 66.0 0.3 1E-05 35.1 -3.4 75 87-169 5-83 (88)
103 3nw0_A Non-structural maintena 66.0 2.5 8.7E-05 37.3 2.0 45 52-97 179-229 (238)
104 2ct7_A Ring finger protein 31; 65.5 4.6 0.00016 29.6 3.1 34 51-84 23-61 (86)
105 1wg2_A Zinc finger (AN1-like) 65.3 10 0.00035 26.6 4.6 41 54-94 16-56 (64)
106 2ctd_A Zinc finger protein 512 64.9 3.7 0.00013 30.3 2.5 56 106-169 29-87 (96)
107 3m62_A Ubiquitin conjugation f 64.6 3 0.0001 44.0 2.5 63 48-111 886-955 (968)
108 2xqn_T Testin, TESS; metal-bin 64.5 1.8 6.1E-05 33.7 0.7 45 52-96 29-74 (126)
109 2drp_A Protein (tramtrack DNA- 63.5 3.5 0.00012 27.3 2.0 45 121-169 16-65 (66)
110 1wfl_A Zinc finger protein 216 62.9 13 0.00045 26.8 5.0 40 54-93 26-65 (74)
111 2lt7_A Transcriptional regulat 61.8 3 0.0001 32.9 1.6 53 111-171 50-105 (133)
112 2csh_A Zinc finger protein 297 61.7 4.1 0.00014 30.0 2.3 45 121-169 43-90 (110)
113 2jny_A Uncharacterized BCR; st 60.7 3.2 0.00011 29.4 1.4 34 46-82 3-36 (67)
114 2jrp_A Putative cytoplasmic pr 60.4 2.9 9.8E-05 30.8 1.1 38 54-96 3-42 (81)
115 1wfp_A Zinc finger (AN1-like) 59.7 19 0.00066 25.9 5.3 42 53-94 25-66 (74)
116 2ct1_A Transcriptional repress 59.0 5.4 0.00018 27.4 2.4 47 121-171 21-72 (77)
117 1wff_A Riken cDNA 2810002D23 p 58.9 18 0.00061 26.8 5.2 39 54-93 26-66 (85)
118 2jr6_A UPF0434 protein NMA0874 57.9 4.3 0.00015 28.8 1.6 33 47-82 2-34 (68)
119 2adr_A ADR1; transcription reg 57.5 9.9 0.00034 24.4 3.4 47 121-171 8-57 (60)
120 3knv_A TNF receptor-associated 57.5 2.9 0.0001 33.6 0.8 28 139-168 102-130 (141)
121 1iml_A CRIP, cysteine rich int 57.4 4.3 0.00015 28.5 1.6 44 52-95 26-71 (76)
122 2jmo_A Parkin; IBR, E3 ligase, 57.2 7.8 0.00027 28.0 3.0 39 53-93 25-75 (80)
123 3uk3_C Zinc finger protein 217 55.6 4.8 0.00016 25.6 1.5 27 139-169 30-57 (57)
124 1a1h_A QGSR zinc finger peptid 55.0 7.8 0.00027 27.0 2.7 52 109-168 32-86 (90)
125 1x4u_A Zinc finger, FYVE domai 54.2 9.9 0.00034 27.7 3.2 35 49-83 10-47 (84)
126 1x68_A FHL5 protein; four-and- 53.3 7.8 0.00027 27.1 2.4 39 52-90 34-73 (76)
127 2gli_A Protein (five-finger GL 53.2 9.6 0.00033 29.6 3.2 79 86-168 68-154 (155)
128 1x61_A Thyroid receptor intera 51.3 3.2 0.00011 28.8 0.0 38 53-90 33-70 (72)
129 2i13_A AART; DNA binding, zinc 50.5 7.6 0.00026 31.6 2.3 75 87-169 79-158 (190)
130 1x3c_A Zinc finger protein 292 49.4 11 0.00039 27.1 2.7 29 140-170 26-55 (73)
131 2d9h_A Zinc finger protein 692 49.4 6.5 0.00022 27.0 1.4 47 121-171 13-65 (78)
132 2kpi_A Uncharacterized protein 49.0 6.6 0.00023 26.7 1.3 31 46-81 3-35 (56)
133 2js4_A UPF0434 protein BB2007; 48.1 6.8 0.00023 27.9 1.4 32 48-82 3-34 (70)
134 2jtn_A LIM domain-binding prot 47.6 5.7 0.0002 33.0 1.1 14 53-66 60-73 (182)
135 2ebt_A Krueppel-like factor 5; 47.5 13 0.00046 26.3 3.0 44 120-167 52-98 (100)
136 1dl6_A Transcription factor II 46.8 14 0.00048 25.1 2.8 36 46-83 4-39 (58)
137 2gqj_A Zinc finger protein KIA 46.7 6 0.00021 28.8 0.9 56 108-171 21-81 (98)
138 1z2q_A LM5-1; membrane protein 46.4 19 0.00066 26.1 3.7 34 50-83 18-54 (84)
139 1m3v_A FLIN4, fusion of the LI 45.9 5.2 0.00018 31.0 0.5 45 53-97 32-81 (122)
140 3zyq_A Hepatocyte growth facto 45.2 13 0.00046 32.1 3.1 29 55-83 166-197 (226)
141 2rgt_A Fusion of LIM/homeobox 44.8 7.4 0.00025 31.9 1.3 44 52-96 32-76 (169)
142 2hf1_A Tetraacyldisaccharide-1 44.7 6.3 0.00022 27.9 0.7 32 48-82 3-34 (68)
143 2yw8_A RUN and FYVE domain-con 44.3 13 0.00046 26.9 2.5 33 51-83 17-52 (82)
144 2xjy_A Rhombotin-2; oncoprotei 43.2 4.9 0.00017 31.3 -0.1 46 51-96 27-77 (131)
145 2rpc_A Zinc finger protein ZIC 43.1 25 0.00086 27.2 4.2 78 86-169 26-117 (155)
146 1tf6_A Protein (transcription 43.1 26 0.0009 28.2 4.5 111 50-169 9-131 (190)
147 2i13_A AART; DNA binding, zinc 42.8 9.9 0.00034 30.9 1.8 14 53-66 21-34 (190)
148 1x5w_A Zinc finger protein 64, 42.4 13 0.00044 24.8 2.1 46 121-170 15-63 (70)
149 1joc_A EEA1, early endosomal a 42.3 10 0.00036 29.9 1.8 32 53-84 69-103 (125)
150 1bbo_A Human enhancer-binding 41.7 20 0.00069 22.5 2.9 36 130-169 17-54 (57)
151 2pk7_A Uncharacterized protein 41.0 7 0.00024 27.8 0.5 32 48-82 3-34 (69)
152 2ko5_A Ring finger protein Z; 40.2 10 0.00035 28.7 1.3 48 48-97 23-73 (99)
153 2jp9_A Wilms tumor 1; DNA bind 40.1 23 0.00078 25.9 3.4 13 54-66 7-21 (119)
154 1dvp_A HRS, hepatocyte growth 39.6 13 0.00043 32.0 2.0 30 54-83 162-194 (220)
155 1x4w_A Hypothetical protein FL 39.4 39 0.0013 23.8 4.2 40 54-93 16-58 (67)
156 1rut_X Flinc4, fusion protein 38.7 4.4 0.00015 33.9 -1.1 45 52-96 31-80 (188)
157 2lv2_A Insulinoma-associated p 37.8 18 0.00062 26.2 2.3 46 121-170 34-82 (85)
158 2vrw_B P95VAV, VAV1, proto-onc 37.7 16 0.00054 34.0 2.5 37 49-85 353-393 (406)
159 2d8z_A Four and A half LIM dom 37.3 10 0.00035 25.8 0.9 33 52-84 30-62 (70)
160 1vfy_A Phosphatidylinositol-3- 36.8 18 0.0006 25.6 2.1 29 55-83 13-44 (73)
161 1tf6_A Protein (transcription 35.7 25 0.00085 28.4 3.2 14 53-66 42-57 (190)
162 1a7i_A QCRP2 (LIM1); LIM domai 35.6 8.9 0.0003 27.1 0.3 41 52-92 33-74 (81)
163 1zw8_A Zinc-responsive transcr 35.1 48 0.0017 22.4 4.1 52 113-168 3-64 (64)
164 2fiy_A Protein FDHE homolog; F 35.1 15 0.0005 33.7 1.8 44 51-94 180-231 (309)
165 2eln_A Zinc finger protein 406 34.9 28 0.00096 21.0 2.6 25 140-166 8-33 (38)
166 1x4l_A Skeletal muscle LIM-pro 34.2 13 0.00044 25.6 1.0 33 52-84 34-66 (72)
167 2wbt_A B-129; zinc finger; 2.7 34.0 25 0.00084 26.4 2.7 55 107-170 70-126 (129)
168 3i2d_A E3 SUMO-protein ligase 34.0 20 0.00068 33.7 2.5 59 50-110 246-316 (371)
169 3t7l_A Zinc finger FYVE domain 33.7 29 0.001 25.5 2.9 32 52-83 19-53 (90)
170 2wbs_A Krueppel-like factor 4; 33.0 12 0.00042 25.9 0.7 42 120-165 42-86 (89)
171 1y02_A CARP2, FYVE-ring finger 32.3 21 0.00072 28.0 2.0 42 52-93 18-65 (120)
172 1b8t_A Protein (CRP1); LIM dom 31.7 15 0.00052 30.6 1.2 39 52-96 114-153 (192)
173 1x6e_A Zinc finger protein 24; 31.5 20 0.00069 24.0 1.6 45 121-169 20-67 (72)
174 1ubd_C Protein (YY1 zinc finge 31.2 29 0.00098 25.6 2.6 79 86-170 6-90 (124)
175 2cot_A Zinc finger protein 435 31.0 45 0.0016 22.4 3.5 45 121-169 24-71 (77)
176 2ehe_A Four and A half LIM dom 30.3 22 0.00074 25.0 1.7 33 52-84 42-74 (82)
177 2dar_A PDZ and LIM domain prot 30.2 17 0.00058 26.3 1.1 12 55-66 27-38 (90)
178 1wfk_A Zinc finger, FYVE domai 30.0 25 0.00087 25.8 2.0 30 54-83 10-42 (88)
179 3lqh_A Histone-lysine N-methyl 29.8 56 0.0019 27.4 4.4 43 55-97 4-66 (183)
180 2cu8_A Cysteine-rich protein 2 29.6 15 0.00053 25.5 0.7 30 54-83 37-67 (76)
181 2cur_A Skeletal muscle LIM-pro 29.5 14 0.00047 25.2 0.4 31 53-83 31-61 (69)
182 3vhs_A ATPase wrnip1; zinc fin 29.2 8.7 0.0003 21.9 -0.5 14 121-134 12-25 (29)
183 2jvx_A NF-kappa-B essential mo 29.1 20 0.00067 20.9 1.0 14 53-66 3-16 (28)
184 1weu_A Inhibitor of growth fam 28.4 97 0.0033 22.9 5.1 45 49-94 32-85 (91)
185 1paa_A Yeast transcription fac 28.2 41 0.0014 17.4 2.4 25 141-169 2-27 (30)
186 2cuq_A Four and A half LIM dom 27.7 31 0.001 24.0 2.1 24 73-96 2-26 (80)
187 2vy4_A U11/U12 small nuclear r 27.2 12 0.00042 23.1 -0.1 25 111-138 5-29 (37)
188 1wfe_A Riken cDNA 2310008M20 p 27.1 48 0.0017 24.4 3.1 39 50-89 22-63 (86)
189 1sp2_A SP1F2; zinc finger, tra 27.0 63 0.0022 17.0 3.1 25 140-166 1-26 (31)
190 1klr_A Zinc finger Y-chromosom 26.7 48 0.0016 16.9 2.5 25 141-169 2-27 (30)
191 1wyh_A SLIM 2, skeletal muscle 26.4 15 0.00052 25.1 0.2 31 53-83 33-63 (72)
192 1x4k_A Skeletal muscle LIM-pro 26.1 13 0.00046 25.4 -0.1 30 54-83 34-63 (72)
193 1nyp_A Pinch protein; LIM doma 25.8 14 0.00047 24.9 -0.1 30 53-82 31-60 (66)
194 1x6h_A Transcriptional repress 25.6 36 0.0012 23.1 2.2 28 140-171 46-74 (86)
195 2iyb_E Testin, TESS, TES; LIM 25.4 17 0.00058 24.5 0.3 32 52-83 31-63 (65)
196 2k5r_A Uncharacterized protein 25.4 29 0.001 26.2 1.7 17 48-64 3-19 (97)
197 2egq_A FHL1 protein; LIM domai 25.3 15 0.00052 25.5 0.0 11 54-64 47-57 (77)
198 1ard_A Yeast transcription fac 25.0 62 0.0021 16.4 2.7 23 141-167 2-25 (29)
199 2d8x_A Protein pinch; LIM doma 24.9 14 0.00049 25.1 -0.2 31 53-83 31-61 (70)
200 2lce_A B-cell lymphoma 6 prote 24.5 55 0.0019 21.7 2.9 26 140-169 44-70 (74)
201 1ncs_A Peptide M30F, transcrip 24.5 67 0.0023 19.3 3.1 27 138-166 15-42 (47)
202 2dlo_A Thyroid receptor-intera 23.5 38 0.0013 23.7 1.9 25 72-96 2-26 (81)
203 1p7a_A BF3, BKLF, kruppel-like 23.2 73 0.0025 17.5 3.0 24 140-167 10-34 (37)
204 1b8t_A Protein (CRP1); LIM dom 23.1 19 0.00066 29.9 0.3 44 51-94 32-76 (192)
205 3k1f_M Transcription initiatio 23.1 37 0.0013 28.7 2.0 38 45-82 13-50 (197)
206 2m0e_A Zinc finger and BTB dom 23.0 50 0.0017 16.7 2.0 23 141-167 2-25 (29)
207 2kvf_A Zinc finger and BTB dom 23.0 48 0.0016 16.9 1.9 23 140-166 2-25 (28)
208 2d8y_A Eplin protein; LIM doma 22.6 32 0.0011 24.7 1.4 10 55-64 17-26 (91)
209 2cor_A Pinch protein; LIM doma 22.6 27 0.00091 24.6 0.9 31 53-84 41-71 (79)
210 1wig_A KIAA1808 protein; LIM d 22.5 21 0.00072 24.7 0.3 33 52-84 30-63 (73)
211 1lpv_A Doublesex protein; tran 22.5 28 0.00094 23.3 0.9 23 124-146 16-38 (52)
212 1g47_A Pinch protein; LIM doma 22.4 19 0.00063 25.0 0.0 29 54-82 40-68 (77)
213 1x3h_A Leupaxin; paxillin fami 22.2 29 0.00098 24.2 1.0 31 53-83 41-71 (80)
214 1rik_A E6APC1 peptide; E6-bind 21.8 56 0.0019 16.7 2.1 23 140-166 1-24 (29)
215 2k5c_A Uncharacterized protein 21.0 30 0.001 25.4 0.9 20 105-128 45-64 (95)
216 3mpx_A FYVE, rhogef and PH dom 20.6 21 0.00072 33.4 0.0 33 51-83 373-408 (434)
217 2elx_A Zinc finger protein 406 20.5 69 0.0024 17.2 2.4 25 140-168 6-31 (35)
218 1x4v_A Hypothetical protein LO 20.1 65 0.0022 22.3 2.5 36 53-89 12-50 (63)
No 1
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=100.00 E-value=1.5e-43 Score=311.32 Aligned_cols=189 Identities=31% Similarity=0.637 Sum_probs=131.4
Q ss_pred HhhhccccCCCCCCCCccccCccchhccccccCcccccCCCCCCCCccccChhhHHHHhhhhCCC-CcccceeEEEEEec
Q 021988 106 VAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQV-DMHDGCTFNHRYVK 184 (304)
Q Consensus 106 ~l~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~-~~~~g~~~~~~f~~ 184 (304)
+++++++||+|+.+||.+.++|.++.+||++|.|+|+.||.+|.+|+|+|+.++|..|++.+|++ .+++|+++ .|++
T Consensus 1 v~~s~~~pC~~~~~GC~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~~~~~~g~~i--~f~~ 78 (193)
T 2a25_A 1 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDI--VFLA 78 (193)
T ss_dssp -----------------------------------CEECCCC--CCCCEECSTTHHHHHHHHCTTSCEEESSEE--EEEE
T ss_pred CccceEecCCCCCCCCCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHHHCCCcceecCceE--EEEe
Confidence 46789999999999999999999999999999999999999878899999999999999999997 46778765 4777
Q ss_pred cCCCcccccceEEEEEeecCceEEEEEeEEeecc-eEEEEEEEEEeCCccccCCcEEEEEEeeCCceEEEEeeeeeeecc
Q 021988 185 SDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGM-ALVYMAFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDS 263 (304)
Q Consensus 185 s~~~~~~~~~~~l~v~~~~g~~F~l~~~~~~~g~-~~~~~a~v~~iG~~~~a~~F~Y~l~~~~~~r~L~~~s~~~si~~~ 263 (304)
++.+...+.+|+ ++++|||++|+|+++++.+++ +.+++++|++||++++|++|+|+|++.+++|+|+|+++|+|++++
T Consensus 79 ~~~~l~~~~~~~-~v~~~~g~~Fll~~~~~~~~~g~~~~~~~V~~ig~~~ea~~f~Y~l~~~~~~r~L~~~~~~~s~~e~ 157 (193)
T 2a25_A 79 TDINLPGAVDWV-MMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEG 157 (193)
T ss_dssp ECCC----CEEE-EEEEETTEEEEEEEEEC------CEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETTTC
T ss_pred cccccccceeEE-EEEEecCceEEEEEEEeccCCCCcEEEEEEEEeCCcchhcceEEEEEEEcCCCEEEEEEEEEehhhc
Confidence 777655566897 488999999999999998754 356778899999999999999999999999999999999999999
Q ss_pred ccccccCCCeEEEeCCcceeeecCCeeeEEEEEE
Q 021988 264 HRKVRDSQDGLIIQRNMALYFSGGDRTELKLRIT 297 (304)
Q Consensus 264 ~~~~~~~~d~L~ip~~~~~~f~~~~~~~l~l~I~ 297 (304)
+..+++++|||+||++++++|++|++|.|+|+|+
T Consensus 158 ~~~~~~~~d~L~ip~~~~~~f~~~~~L~l~v~I~ 191 (193)
T 2a25_A 158 IATAIMNSDCLVFDTSIAQLFAENGNLGINVTIS 191 (193)
T ss_dssp SHHHHHTTCSEEEEHHHHHHHCSSSEEEEEEEEE
T ss_pred ccccccCCCEEEEcHHHHHhhcCCCeEEEEEEEE
Confidence 9998999999999999999999999999999995
No 2
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.84 E-value=7.9e-22 Score=168.94 Aligned_cols=122 Identities=22% Similarity=0.425 Sum_probs=108.7
Q ss_pred ccccccCCCCeeeecccccccccccccccccCeecccCcccc----cCCCCCCccCCCC---ccchHHHHHhhhccccCC
Q 021988 43 GIYSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN---IRCLALEKVAESLELPCK 115 (304)
Q Consensus 43 ~~~~~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~---~r~~~le~~l~~l~v~C~ 115 (304)
...+.+.+.+.|.||||.+++.+|+ +++|||+||..|+.++ ...||.||.++.. .++.++++.+.++++.|+
T Consensus 8 ~~~~~~~~~~~~~C~IC~~~~~~pv-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~ 86 (170)
T 3hcs_A 8 DVEFDPPLESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCP 86 (170)
T ss_dssp CSEESSCCCGGGBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECC
T ss_pred ChhhccCCCCCCCCCCCChhhcCcE-ECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCCC
Confidence 3447788999999999999999996 4667999999999876 2489999999875 478999999999999999
Q ss_pred CCCCCCccccCccchhccccccCcccccCCCCCCCCccccChhhHHHHhhhhCCCC
Q 021988 116 YQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVD 171 (304)
Q Consensus 116 ~~~~GC~~~~~~~~~~~He~~C~~~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~~ 171 (304)
|. ||++.+++.++.+|+++|+|+++.|| +|++.+.+.+|..|+.......
T Consensus 87 n~--GC~~~~~~~~l~~H~~~C~~~~v~C~----~C~~~~~r~~l~~H~~~~C~~r 136 (170)
T 3hcs_A 87 NE--GCLHKMELRHLEDHQAHCEFALMDCP----QCQRPFQKFHINIHILKDCPRR 136 (170)
T ss_dssp ST--TCCCEEEGGGHHHHHTTCTTSEEECT----TTCCEEEGGGHHHHHHHTCTTC
T ss_pred CC--CCCceecHhHHHHHHhcCCceeeECC----CCChHHHHHHHHHHhhhhCCCC
Confidence 84 99999999999999999999999998 3999999999999998777654
No 3
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.64 E-value=1.1e-16 Score=129.19 Aligned_cols=93 Identities=23% Similarity=0.427 Sum_probs=80.8
Q ss_pred ccccCCCCeeeecccccccccccccccccCeecccCcccc---c-CCCCCCccCCCC---ccchHHHHHhhhccccCCCC
Q 021988 45 YSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV---H-NCCPTCRFDLGN---IRCLALEKVAESLELPCKYQ 117 (304)
Q Consensus 45 ~~~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~---~-~~CP~Cr~~~~~---~r~~~le~~l~~l~v~C~~~ 117 (304)
.+.+.+.+.+.|+||.+++.+|+. .+|||+||..|+.++ . ..||.||.++.. .++..+++.+.++++.|+|
T Consensus 10 ~~~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n- 87 (118)
T 3hct_A 10 EFDPPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN- 87 (118)
T ss_dssp CBSSCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECSS-
T ss_pred hhccCCCCCCCCCcCChhhcCeEE-CCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeECCC-
Confidence 467789999999999999999962 344999999999876 2 489999999865 3788999999999999997
Q ss_pred CCCCccccCccchhccccccCcc
Q 021988 118 SLGCHDIFPYYGKLKHEQHCRFR 140 (304)
Q Consensus 118 ~~GC~~~~~~~~~~~He~~C~~~ 140 (304)
.||++.+++.++++|+++|.+.
T Consensus 88 -~gC~~~~~~~~l~~H~~~c~~~ 109 (118)
T 3hct_A 88 -EGCLHKMELRHLEDHQAHCEFA 109 (118)
T ss_dssp -TTCCCEEEGGGSGGGTSSSCC-
T ss_pred -CCCCCEEeeHHHHHHHHHchhh
Confidence 5999999999999999998874
No 4
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.58 E-value=1.4e-16 Score=132.95 Aligned_cols=91 Identities=24% Similarity=0.387 Sum_probs=77.5
Q ss_pred ccccCCCCeeeecccccccccccccccccCeecccCccccc----CCCCCCccCCCC------------ccchHHHHHhh
Q 021988 45 YSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVH----NCCPTCRFDLGN------------IRCLALEKVAE 108 (304)
Q Consensus 45 ~~~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~~----~~CP~Cr~~~~~------------~r~~~le~~l~ 108 (304)
.+.+.+.+.+.|+||.+++.+|+ +.+|||+||..|+.++. ..||.||.++.. .++.++++.+.
T Consensus 23 ~~~~~l~~~~~C~IC~~~~~~pv-~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~ 101 (141)
T 3knv_A 23 LLGTKLEAKYLCSACRNVLRRPF-QAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVE 101 (141)
T ss_dssp GTGGGCCGGGBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHH
T ss_pred hhhccCCcCcCCCCCChhhcCcE-ECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHc
Confidence 34578899999999999999995 44569999999999762 379999997521 26788999999
Q ss_pred hccccCCCCCCCCccccCccchhc-cccccC
Q 021988 109 SLELPCKYQSLGCHDIFPYYGKLK-HEQHCR 138 (304)
Q Consensus 109 ~l~v~C~~~~~GC~~~~~~~~~~~-He~~C~ 138 (304)
+++++|+| .||.|.+++.++++ |+..|.
T Consensus 102 ~L~v~Cpn--~GC~~~~~l~~l~~~H~~~~~ 130 (141)
T 3knv_A 102 SLPAVCPS--DGCTWKGTLKEYESCHEGRCP 130 (141)
T ss_dssp TSEEECCS--TTCCCEEEHHHHHHHTTTCCH
T ss_pred ccccccCC--CCCCCEeEHHHHHHHHHHHhH
Confidence 99999999 59999999999998 998875
No 5
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.57 E-value=1.7e-16 Score=127.41 Aligned_cols=91 Identities=19% Similarity=0.428 Sum_probs=77.8
Q ss_pred ccCCCCeeeecccccccccccccccccCeecccCcccc----cCCCCCCccCCCC----ccchHHHHHhhhccccCCCCC
Q 021988 47 NNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN----IRCLALEKVAESLELPCKYQS 118 (304)
Q Consensus 47 ~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~----~r~~~le~~l~~l~v~C~~~~ 118 (304)
..++.+.+.||||++++.+|+. .+|||.||..|+.++ ...||.||.++.. ..+..+.+++.++++.|+|.
T Consensus 17 ~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~- 94 (116)
T 1rmd_A 17 PAHFVKSISCQICEHILADPVE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQ- 94 (116)
T ss_dssp CHHHHHHTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCST-
T ss_pred HHhccCCCCCCCCCcHhcCcEE-cCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCC-
Confidence 3456678899999999999973 344999999999865 3579999999864 34678999999999999996
Q ss_pred CCCccccCccchhccccccCcc
Q 021988 119 LGCHDIFPYYGKLKHEQHCRFR 140 (304)
Q Consensus 119 ~GC~~~~~~~~~~~He~~C~~~ 140 (304)
||++.+++.++.+|+++|.+.
T Consensus 95 -gC~~~~~~~~~~~H~~~C~~~ 115 (116)
T 1rmd_A 95 -DCNEEVSLEKYNHHVSSHKES 115 (116)
T ss_dssp -TCCCEEEHHHHHHHHHTSCCC
T ss_pred -CCcchhhHhHHHHHHHHhhcc
Confidence 999999999999999999874
No 6
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.04 E-value=9.5e-11 Score=89.64 Aligned_cols=69 Identities=22% Similarity=0.550 Sum_probs=55.4
Q ss_pred cccCCCCeeeeccccccccccc-cc-ccccCeecccCccccc-----CCCCCCccCCC----CccchHHHHHhhhccccC
Q 021988 46 SNNGVHELLECPVCTNLMYPPI-HQ-CPNGHTLCSNCKNRVH-----NCCPTCRFDLG----NIRCLALEKVAESLELPC 114 (304)
Q Consensus 46 ~~~~l~~~l~CpIC~~~l~~Pi-~q-C~~GH~fC~~C~~~~~-----~~CP~Cr~~~~----~~r~~~le~~l~~l~v~C 114 (304)
..+.+.+.+.|+||.+++.+|+ +. | ||+||..|+.++. ..||.||.++. ..+|..++++++.++-.-
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~ 83 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVIPCC--GNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNET 83 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEECTTT--CCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHH
T ss_pred ccccCCcCCCCCCCChhhcCceECCCC--CCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHH
Confidence 3457888999999999999997 45 5 9999999998652 58999999973 257889999888876544
Q ss_pred CC
Q 021988 115 KY 116 (304)
Q Consensus 115 ~~ 116 (304)
.+
T Consensus 84 ~~ 85 (92)
T 3ztg_A 84 GY 85 (92)
T ss_dssp TC
T ss_pred hH
Confidence 33
No 7
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.97 E-value=9.5e-11 Score=86.85 Aligned_cols=51 Identities=33% Similarity=0.860 Sum_probs=42.8
Q ss_pred ccccCCCCeeeeccccccccccc-ccccccCeecccCcccc----------cCCCCCCccCCCC
Q 021988 45 YSNNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV----------HNCCPTCRFDLGN 97 (304)
Q Consensus 45 ~~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~----------~~~CP~Cr~~~~~ 97 (304)
...+.+.+.+.|+||++.+.+|+ +.| ||.||..|+.++ ...||.||..+..
T Consensus 4 ~~~~~~~~~~~C~IC~~~~~~p~~l~C--gH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 4 GSSGNVQEEVTCPICLELLTEPLSLDC--GHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SSSCCCCCCCEETTTTEECSSCCCCSS--SCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred chHhhcccCCCCcCCCcccCCeeECCC--CCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 45678889999999999999996 455 999999999864 2479999998764
No 8
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.96 E-value=9.4e-11 Score=86.91 Aligned_cols=62 Identities=21% Similarity=0.363 Sum_probs=50.7
Q ss_pred cCCCCeeeeccccccccccc-ccccccCeecccCcccc----cCCCCCCccCCCC---ccchHHHHHhhhcc
Q 021988 48 NGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN---IRCLALEKVAESLE 111 (304)
Q Consensus 48 ~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~---~r~~~le~~l~~l~ 111 (304)
.++.+.+.||||.+++.+|+ ..| ||+||..|+.++ ...||.||.++.. .+|.+++++++.+.
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~C--gH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVST--GQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETT--TEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred cCCcccCCCCCccccccCCEEcCC--CCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHH
Confidence 45778899999999999997 455 999999999865 3579999999864 46888888877654
No 9
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=1.8e-10 Score=86.08 Aligned_cols=51 Identities=31% Similarity=0.821 Sum_probs=43.0
Q ss_pred ccccCCCCeeeeccccccccccc-ccccccCeecccCcccc---------cCCCCCCccCCCC
Q 021988 45 YSNNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV---------HNCCPTCRFDLGN 97 (304)
Q Consensus 45 ~~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~---------~~~CP~Cr~~~~~ 97 (304)
...+.+.+.+.|+||++.+.+|+ +.| ||.||..|+.++ ...||.||..+..
T Consensus 11 ~~~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 11 GILVNVKEEVTCPICLELLTQPLSLDC--GHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCCCCTTTCSCCSSCBCCSS--SCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHHHHccCCCCCCCCCcccCCceeCCC--CCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 45577888999999999999996 455 999999999864 4689999998763
No 10
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.87 E-value=7.4e-10 Score=84.09 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=53.0
Q ss_pred ccCCCCeeeeccccccccccc-ccccccCeecccCcccc---cCCCCCCccCCCC---ccchHHHHHhhhcc
Q 021988 47 NNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN---IRCLALEKVAESLE 111 (304)
Q Consensus 47 ~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~l~~l~ 111 (304)
...+++.|.||||+++|++|| ..| ||+||+.|+.++ ...||.|+.++.. .+|.++.++++.+.
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~c--Ghtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPS--GTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWM 77 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTT--SCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred hhcCchheECcccCchhcCCeECCC--CCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHH
Confidence 356788999999999999997 455 999999999876 4789999999864 57888888887663
No 11
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=9.8e-10 Score=80.15 Aligned_cols=51 Identities=27% Similarity=0.798 Sum_probs=42.6
Q ss_pred ccccCCCCeeeeccccccccccc-ccccccCeecccCccccc------CCCCCCccCCCC
Q 021988 45 YSNNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRVH------NCCPTCRFDLGN 97 (304)
Q Consensus 45 ~~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~------~~CP~Cr~~~~~ 97 (304)
...+++.+.+.|+||++.+.+|+ +.| ||.||..|+.++. ..||.||.++..
T Consensus 12 ~~~~~~~~~~~C~IC~~~~~~~~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 12 QFVNKLQEEVICPICLDILQKPVTIDC--GHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCCCCBCTTTCSBCSSEEECTT--CCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HHHHhCccCCEeccCCcccCCeEEcCC--CChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 45567888999999999999996 455 9999999998763 379999998753
No 12
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.86 E-value=1e-09 Score=85.64 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=53.8
Q ss_pred ccCCCCeeeeccccccccccc-cccccc-CeecccCcccc---cCCCCCCccCCCC---ccchHHHHHhhhccc
Q 021988 47 NNGVHELLECPVCTNLMYPPI-HQCPNG-HTLCSNCKNRV---HNCCPTCRFDLGN---IRCLALEKVAESLEL 112 (304)
Q Consensus 47 ~~~l~~~l~CpIC~~~l~~Pi-~qC~~G-H~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~l~~l~v 112 (304)
..++++.|.||||+++|++|| ..| | |+||+.|+.++ ...||.|+.++.. .+|..++++++.+.-
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~c--G~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~ 87 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPS--SRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLA 87 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTT--TCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHH
T ss_pred hhcCcHhcCCcCccccccCCeECCC--CCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHH
Confidence 456788999999999999997 456 8 99999999876 3679999999864 688899998887754
No 13
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.85 E-value=3.7e-10 Score=90.48 Aligned_cols=67 Identities=24% Similarity=0.440 Sum_probs=52.7
Q ss_pred ccccCCCCeeeecccccccccccccccccCeecccCccccc-CCCCCCccCCCC---ccchHHHHHhhhcc
Q 021988 45 YSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVH-NCCPTCRFDLGN---IRCLALEKVAESLE 111 (304)
Q Consensus 45 ~~~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~~-~~CP~Cr~~~~~---~r~~~le~~l~~l~ 111 (304)
...+.+.+.+.|+||++++.+|+...+|||+||..|+.++. ..||.||.++.. .+|..+.+++..++
T Consensus 14 ~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~ 84 (117)
T 1jm7_B 14 AALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLCS 84 (117)
T ss_dssp HHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHHH
T ss_pred HHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHHHHH
Confidence 44567788899999999999997432349999999999874 589999999853 46788887777543
No 14
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.84 E-value=3.1e-10 Score=84.80 Aligned_cols=59 Identities=25% Similarity=0.645 Sum_probs=45.7
Q ss_pred ccccCCCCeeeeccccccccccc-ccccccCeecccCcccc---------cCCCCCCccCCCC---ccchHHHH
Q 021988 45 YSNNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV---------HNCCPTCRFDLGN---IRCLALEK 105 (304)
Q Consensus 45 ~~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~---------~~~CP~Cr~~~~~---~r~~~le~ 105 (304)
...+++.+.+.|+||++.+.+|+ +.| ||.||..|+.++ ...||.||..+.. .+|..+++
T Consensus 11 ~~~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 11 SVLEMIKEEVTCPICLELLKEPVSADC--NHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp CCCCCCCTTTSCTTTCSCCSSCEECTT--SCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred HHHHhCccCCCCcCCChhhCcceeCCC--CCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 44567888899999999999996 455 999999999864 3579999998763 34544443
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=1.8e-09 Score=80.66 Aligned_cols=60 Identities=18% Similarity=0.435 Sum_probs=46.3
Q ss_pred ccCCCCeeeeccccccccccc-ccccccCeecccCcccc---cCCCCCCccCCCC--ccchHHHHHhh
Q 021988 47 NNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN--IRCLALEKVAE 108 (304)
Q Consensus 47 ~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~--~r~~~le~~l~ 108 (304)
.++..+.+.|+||++.+.+|+ +.| ||.||..|+.++ ...||.||.++.. ..+..+...+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~~~~ 74 (81)
T 2csy_A 9 SEEEEIPFRCFICRQAFQNPVVTKC--RHYFCESCALEHFRATPRCYICDQPTGGIFNPAKELMAKLQ 74 (81)
T ss_dssp SSCCCCCSBCSSSCSBCCSEEECTT--SCEEEHHHHHHHHHHCSBCSSSCCBCCSCCEECHHHHHHHS
T ss_pred cccCCCCCCCcCCCchhcCeeEccC--CCHhHHHHHHHHHHCCCcCCCcCccccccCCcHHHHHHHHH
Confidence 356677889999999999996 456 999999999876 4689999999863 34555544443
No 16
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.81 E-value=9.6e-10 Score=86.10 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=53.5
Q ss_pred ccCCCCeeeeccccccccccc-ccccccCeecccCcccc---cCCCCCCccCCCC---ccchHHHHHhhhcc
Q 021988 47 NNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN---IRCLALEKVAESLE 111 (304)
Q Consensus 47 ~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~l~~l~ 111 (304)
..++++.|.||||+++|++|| ..| ||+||+.|+.++ ...||.|+.++.. .+|..+.++++.+.
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~c--Ghtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPS--GTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWM 92 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETT--TEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred hccCcHhhCCcCccCcccCCeECCC--CCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence 456788999999999999997 466 999999999876 3689999999864 67889998888764
No 17
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.81 E-value=5.2e-10 Score=86.78 Aligned_cols=68 Identities=22% Similarity=0.486 Sum_probs=53.7
Q ss_pred cccccCCCCeeeecccccccccccccccccCeecccCcccc---cCCCCCCccCCCC---ccchHHHHHhhhcc
Q 021988 44 IYSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN---IRCLALEKVAESLE 111 (304)
Q Consensus 44 ~~~~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~l~~l~ 111 (304)
....+.+.+.+.|+||.+.+.+|+..-+|||.||..|+.++ ...||.||..+.. .+|..++++++.++
T Consensus 13 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~ 86 (99)
T 2y43_A 13 LAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLN 86 (99)
T ss_dssp GGGGHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred hhHHHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHH
Confidence 34456677889999999999999632133999999999875 3689999999863 57888888887764
No 18
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=3e-09 Score=74.21 Aligned_cols=46 Identities=30% Similarity=0.590 Sum_probs=39.7
Q ss_pred CCCeeeeccccccccccc-ccccccCeecccCcccccCCCCCCccCCCC
Q 021988 50 VHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRVHNCCPTCRFDLGN 97 (304)
Q Consensus 50 l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~~~CP~Cr~~~~~ 97 (304)
..+.+.|+||.+.+.+|+ +.| ||+||..|+.+....||.||..+..
T Consensus 3 e~~~~~C~IC~~~~~~p~~l~C--gH~fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLLPC--LHTLCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCSTT--SCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred cccCCCceEeCCccCCeEEcCC--CCcccHHHHccCCCCCCcCCcEeec
Confidence 456788999999999996 577 9999999998877799999998753
No 19
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=3.1e-09 Score=76.20 Aligned_cols=51 Identities=22% Similarity=0.608 Sum_probs=42.8
Q ss_pred ccccCCCCeeeeccccccccccc-ccccccCeecccCcccc----cCCCCCCccCCCC
Q 021988 45 YSNNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN 97 (304)
Q Consensus 45 ~~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~ 97 (304)
.+.+.+.+.+.|+||.+.+.+|+ ..| ||.||..|+.++ ...||.||.++..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 7 GFVKTVEDKYKCEKCHLVLCSPKQTEC--GHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CSCCSCCCCEECTTTCCEESSCCCCSS--SCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred hhhhcCCcCCCCCCCChHhcCeeECCC--CCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 45567888999999999999997 455 999999999865 3579999998753
No 20
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.76 E-value=6.2e-10 Score=89.95 Aligned_cols=64 Identities=34% Similarity=0.783 Sum_probs=52.0
Q ss_pred ccccCCCCeeeeccccccccccc-ccccccCeecccCcccc----cCCCCCCccCCCC----ccchHHHHHhhhc
Q 021988 45 YSNNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN----IRCLALEKVAESL 110 (304)
Q Consensus 45 ~~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~----~r~~~le~~l~~l 110 (304)
...+.+.+.+.|+||.+++.+|+ +.| ||+||..|+.++ ...||.||.++.. .+|..+.++++.+
T Consensus 44 ~~~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~ 116 (124)
T 3fl2_A 44 LFLSKVEETFQCICCQELVFRPITTVC--QHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQL 116 (124)
T ss_dssp HHHHHHHHHTBCTTTSSBCSSEEECTT--SCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHH
T ss_pred HHHHhCccCCCCCcCChHHcCcEEeeC--CCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHH
Confidence 34556778899999999999997 555 999999999865 2489999999864 4688888888765
No 21
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=4.5e-09 Score=76.73 Aligned_cols=51 Identities=24% Similarity=0.628 Sum_probs=43.1
Q ss_pred ccccCCCCeeeecccccccccccc--cccccCeecccCcccc---cCCCCCCccCCCC
Q 021988 45 YSNNGVHELLECPVCTNLMYPPIH--QCPNGHTLCSNCKNRV---HNCCPTCRFDLGN 97 (304)
Q Consensus 45 ~~~~~l~~~l~CpIC~~~l~~Pi~--qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 97 (304)
...+++.+.+.|+||++.+.+|+. .| ||.||..|+.++ ...||.||.++..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDATTITEC--LHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSCEECSSS--CCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred hhHhhcCCCCCCCCCChHHHCcCEECCC--CCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 445678889999999999999973 56 999999999876 4789999998764
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.72 E-value=1.5e-09 Score=89.37 Aligned_cols=58 Identities=28% Similarity=0.683 Sum_probs=44.3
Q ss_pred CCCCeeeeccccccccccc-ccccccCeecccCcccc---cCCCCCCccCCCC-ccchHHHHHhh
Q 021988 49 GVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN-IRCLALEKVAE 108 (304)
Q Consensus 49 ~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~-~r~~~le~~l~ 108 (304)
.+.+.+.|+||.+.+.+|+ +.| ||.||..|+.++ ...||.||.++.. ..+..+...+.
T Consensus 49 ~~~~~~~C~iC~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~i~ 111 (138)
T 4ayc_A 49 VLENELQCIICSEYFIEAVTLNC--AHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCIN 111 (138)
T ss_dssp HHHHHSBCTTTCSBCSSEEEETT--SCEEEHHHHHHHTTTCSBCTTTCCBCCCEEECHHHHHHHH
T ss_pred hccccCCCcccCcccCCceECCC--CCCccHHHHHHHHHcCCcCCCCCCcCCCCCCccchhHHHH
Confidence 3456788999999999997 456 999999999875 4689999999865 33444444443
No 23
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=3.4e-09 Score=75.24 Aligned_cols=45 Identities=31% Similarity=0.885 Sum_probs=37.6
Q ss_pred ccccCCCCeeeeccccccccccc-ccccccCeecccCccccc------CCCCCC
Q 021988 45 YSNNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRVH------NCCPTC 91 (304)
Q Consensus 45 ~~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~------~~CP~C 91 (304)
...+.+.+.+.|+||++.+.+|+ +.| ||.||..|+.++. ..||.|
T Consensus 12 ~~~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 12 QFVNKLQEEVICPICLDILQKPVTIDC--GHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCCBCTTTCSBCSSCEECTT--SSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHHhCccCCCCCcCCchhCCeEEeCC--CCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45577889999999999999996 455 9999999998752 379987
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.70 E-value=4.6e-09 Score=77.21 Aligned_cols=49 Identities=24% Similarity=0.720 Sum_probs=41.1
Q ss_pred cccCCCCeeeeccccccccccc-cc-ccccCeecccCccccc-----CCCCCCccCCC
Q 021988 46 SNNGVHELLECPVCTNLMYPPI-HQ-CPNGHTLCSNCKNRVH-----NCCPTCRFDLG 96 (304)
Q Consensus 46 ~~~~l~~~l~CpIC~~~l~~Pi-~q-C~~GH~fC~~C~~~~~-----~~CP~Cr~~~~ 96 (304)
..+++.+.+.|+||++++.+|+ +. | ||.||..|+.++. ..||.||.++.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVIPCC--GNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEECSSS--CCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred ccccCCCCCCCcCCChHHhCCeEcCCC--CCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3467788999999999999997 44 6 9999999998762 58999999753
No 25
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.70 E-value=4.8e-09 Score=78.44 Aligned_cols=51 Identities=25% Similarity=0.679 Sum_probs=40.6
Q ss_pred ccCCCCeeeecccccccc--ccc-ccccccCeecccCcccc----cCCCCCCccCCCC
Q 021988 47 NNGVHELLECPVCTNLMY--PPI-HQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN 97 (304)
Q Consensus 47 ~~~l~~~l~CpIC~~~l~--~Pi-~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~ 97 (304)
.+++.+.+.||||.+.+. ++. +.|+|||.||..|+.++ ...||.||.++..
T Consensus 5 ~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp SCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred ccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 456788899999999985 343 46666999999999865 3589999998764
No 26
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.69 E-value=1.5e-09 Score=91.09 Aligned_cols=64 Identities=30% Similarity=0.713 Sum_probs=52.7
Q ss_pred cccCCCCeeeeccccccccccc-ccccccCeecccCccccc----CCCCCCccCCCC----ccchHHHHHhhhcc
Q 021988 46 SNNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRVH----NCCPTCRFDLGN----IRCLALEKVAESLE 111 (304)
Q Consensus 46 ~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~----~~CP~Cr~~~~~----~r~~~le~~l~~l~ 111 (304)
..+.+.+.+.|+||.+++.+|+ +.| ||+||..|+.++. ..||.||.++.. .+|..++++++.+.
T Consensus 71 ~~~~l~~~~~C~IC~~~~~~pv~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 71 FLKKLEQSFMCVCCQELVYQPVTTEC--FHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF 143 (150)
T ss_dssp HHHHHHHHTBCTTTSSBCSSEEECTT--SCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred HHHhCccCCEeecCChhhcCCEEcCC--CCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence 4556778899999999999997 455 9999999998762 379999999864 47888998888664
No 27
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.68 E-value=3.8e-09 Score=89.42 Aligned_cols=68 Identities=22% Similarity=0.477 Sum_probs=51.6
Q ss_pred ccccCCCCeeeecccccccccccccccccCeecccCcccc----cCCCCCCccCCCC----ccchHHHHHhhhccc
Q 021988 45 YSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN----IRCLALEKVAESLEL 112 (304)
Q Consensus 45 ~~~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~----~r~~~le~~l~~l~v 112 (304)
...+.+.+.+.|+||++.+.+|+...+|||.||..|+.++ ...||.||.++.. .+|..+++++..+.-
T Consensus 46 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 46 VSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp ----CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred cchhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 3345677889999999999999743244999999999876 3569999999854 467889998888744
No 28
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.67 E-value=3e-09 Score=83.83 Aligned_cols=64 Identities=19% Similarity=0.416 Sum_probs=50.7
Q ss_pred ccCCCCeeeecccccccccccccccccCeecccCcccc---cCCCCCCccCCCC-------ccchHHHHHhhhc
Q 021988 47 NNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN-------IRCLALEKVAESL 110 (304)
Q Consensus 47 ~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~-------~r~~~le~~l~~l 110 (304)
.+++.+.+.|+||.+.+.+|+..-+|||+||..|+.++ ...||.||..+.. .+|..++++++.+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~ 82 (108)
T 2ckl_A 9 ITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKL 82 (108)
T ss_dssp HHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHH
T ss_pred hhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHH
Confidence 45678889999999999999732234999999999876 3689999999763 3567788877765
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.66 E-value=1e-09 Score=85.58 Aligned_cols=64 Identities=23% Similarity=0.452 Sum_probs=47.7
Q ss_pred ccccCCCCeeeecccccccccccccccccCeecccCcccc---c-CCCCCCccCCCC---ccchHHHHHhh
Q 021988 45 YSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV---H-NCCPTCRFDLGN---IRCLALEKVAE 108 (304)
Q Consensus 45 ~~~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~---~-~~CP~Cr~~~~~---~r~~~le~~l~ 108 (304)
.....+.+.+.|+||++++.+|+..-+|||.||..|+.++ . ..||.||.++.. .+++.++.+++
T Consensus 14 ~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~ 84 (100)
T 3lrq_A 14 QSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQ 84 (100)
T ss_dssp HHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHH
T ss_pred cccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHH
Confidence 3445678899999999999999641234999999999876 3 589999999864 34555444443
No 30
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=1.1e-08 Score=74.39 Aligned_cols=46 Identities=24% Similarity=0.641 Sum_probs=38.7
Q ss_pred CCCCeeeeccccccccccc-ccccccCeecccCcccc---cCCCCCCccCCC
Q 021988 49 GVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLG 96 (304)
Q Consensus 49 ~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~ 96 (304)
...+.+.|+||++.+.+|+ +.| ||.||..|+.++ ...||.||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPC--KHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETT--TEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred cCCCCCCCccCCcccCCCEEccC--CCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 4456788999999999996 556 999999999875 367999999875
No 31
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.62 E-value=9.3e-09 Score=81.79 Aligned_cols=47 Identities=30% Similarity=0.778 Sum_probs=39.8
Q ss_pred cCCCCeeeeccccccccccc-ccccccCeecccCccccc----CCCCCCccCCC
Q 021988 48 NGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRVH----NCCPTCRFDLG 96 (304)
Q Consensus 48 ~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~----~~CP~Cr~~~~ 96 (304)
..+.+.+.|+||.+.+.+|+ +.| ||.||..|+.++. ..||.||..+.
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPC--NHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTT--SCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred cCCCCCCCCccCCcccCceeEcCC--CCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 45667899999999999997 555 9999999998762 47999999875
No 32
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=9.1e-09 Score=73.83 Aligned_cols=49 Identities=31% Similarity=0.786 Sum_probs=40.5
Q ss_pred cccCCCCeeeecccccccccc-------c-ccccccCeecccCcccc---cCCCCCCccCCC
Q 021988 46 SNNGVHELLECPVCTNLMYPP-------I-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLG 96 (304)
Q Consensus 46 ~~~~l~~~l~CpIC~~~l~~P-------i-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~ 96 (304)
..+.+.+.+.|+||++.+.+| + ..| ||.||..|+.++ ...||.||.++.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSS--SCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred cccCCCCCCCCcccCccccccccccCCeEeCCC--CChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 345677888999999999877 3 456 999999999876 468999999875
No 33
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.61 E-value=1.3e-08 Score=92.11 Aligned_cols=63 Identities=21% Similarity=0.221 Sum_probs=52.4
Q ss_pred cCCCCeeeeccccccccccc-ccccccCeecccCcccc----cCCCCCCccCCCC---ccchHHHHHhhhccc
Q 021988 48 NGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN---IRCLALEKVAESLEL 112 (304)
Q Consensus 48 ~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~---~r~~~le~~l~~l~v 112 (304)
.++++.|.||||.++|.+|| ..| ||+||+.|+.++ ...||.|+.++.. .+|..++++++.+.-
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~~~--gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~ 273 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCITPS--GITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFIS 273 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSS--CCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHT
T ss_pred CCCCcccCCcCcCCHhcCCeECCC--CCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHH
Confidence 45678899999999999997 456 999999999865 2349999999864 578999999887753
No 34
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=2.2e-08 Score=75.38 Aligned_cols=51 Identities=31% Similarity=0.747 Sum_probs=41.8
Q ss_pred ccccCCCCeeeeccccccccc----cc-ccccccCeecccCcccc------cCCCCCCccCCCC
Q 021988 45 YSNNGVHELLECPVCTNLMYP----PI-HQCPNGHTLCSNCKNRV------HNCCPTCRFDLGN 97 (304)
Q Consensus 45 ~~~~~l~~~l~CpIC~~~l~~----Pi-~qC~~GH~fC~~C~~~~------~~~CP~Cr~~~~~ 97 (304)
...+.+.+.+.|+||++.+.+ |+ +.| ||.||..|+.++ ...||.||..+..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 7 GNLDALREVLECPICMESFTEEQLRPKLLHC--GHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCCCCSCCBCTTTCCBCCTTSSCEEECSS--SCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cChhhccCCCCCccCCccccccCCCeEECCC--CChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 344677888999999999998 85 566 999999999876 1589999998653
No 35
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.56 E-value=1.6e-09 Score=85.42 Aligned_cols=48 Identities=33% Similarity=0.969 Sum_probs=39.5
Q ss_pred cCCCCeeeeccccccccccc-ccccccCeecccCccccc------CCCCCCccCCCC
Q 021988 48 NGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRVH------NCCPTCRFDLGN 97 (304)
Q Consensus 48 ~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~------~~CP~Cr~~~~~ 97 (304)
+.+.+.+.|+||++.+.+|+ +.| ||.||..|+.++. ..||.||.++..
T Consensus 16 ~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 16 NAMQKILECPICLELIKEPVSTKC--DHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHHHHHTSCSSSCCCCSSCCBCTT--SCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred HhccCCCCCcccChhhcCeEECCC--CCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 45567789999999999996 455 9999999998652 379999998763
No 36
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=2e-08 Score=77.48 Aligned_cols=64 Identities=23% Similarity=0.409 Sum_probs=50.0
Q ss_pred CCCCeeeecccccccccccccccccCeecccCccccc---------CCCCC--CccC-CCC---ccchHHHHHhhhccc
Q 021988 49 GVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVH---------NCCPT--CRFD-LGN---IRCLALEKVAESLEL 112 (304)
Q Consensus 49 ~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~~---------~~CP~--Cr~~-~~~---~r~~~le~~l~~l~v 112 (304)
...+.|.||||+++|.+||..-.+||+||+.|+.++. ..||. |+.. +.. .+|.+|+++++.++-
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNK 81 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHH
Confidence 4567899999999999998421239999999998752 38999 9866 543 579999999888753
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=3.1e-08 Score=68.69 Aligned_cols=45 Identities=29% Similarity=0.772 Sum_probs=37.2
Q ss_pred ccccCCCCeeeeccccccccccc-ccccccCeecccCcccc------cCCCCCC
Q 021988 45 YSNNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV------HNCCPTC 91 (304)
Q Consensus 45 ~~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~------~~~CP~C 91 (304)
...+.+.+.+.|+||++.+.+|+ +.| ||+||..|+.++ ...||.|
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 7 GALENLQVEASCSVCLEYLKEPVIIEC--GHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSSCSCCCCBCSSSCCBCSSCCCCSS--CCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hHhhccccCCCCccCCcccCccEeCCC--CCccCHHHHHHHHHhcCCCCCCCCC
Confidence 44567888899999999999996 455 999999999865 2578887
No 38
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.51 E-value=2.6e-08 Score=85.80 Aligned_cols=63 Identities=22% Similarity=0.255 Sum_probs=52.4
Q ss_pred cCCCCeeeecccccccccccccccccCeecccCcccc----cCCCCCCccCCCC---ccchHHHHHhhhcc
Q 021988 48 NGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN---IRCLALEKVAESLE 111 (304)
Q Consensus 48 ~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~---~r~~~le~~l~~l~ 111 (304)
..+++.|.||||.++|.+||.. ++||+||..|+.++ ...||.|+.++.. .+|.++.+++..+.
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~-~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred cCCcHhhcccCccccCCCCeEC-CCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHH
Confidence 5678999999999999999732 34999999999875 2359999999864 68899999888764
No 39
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.45 E-value=2.8e-08 Score=71.80 Aligned_cols=47 Identities=32% Similarity=0.836 Sum_probs=38.7
Q ss_pred CCCCeeeecccccccccc-------c-ccccccCeecccCcccc---cCCCCCCccCCCC
Q 021988 49 GVHELLECPVCTNLMYPP-------I-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN 97 (304)
Q Consensus 49 ~l~~~l~CpIC~~~l~~P-------i-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 97 (304)
...+.+.|+||++.+.+| + ..| ||.||..|+.++ ...||.||.++..
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTT--SCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCC--CChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 445678999999999887 3 356 999999999876 4789999998764
No 40
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.41 E-value=3.6e-08 Score=70.32 Aligned_cols=44 Identities=34% Similarity=0.825 Sum_probs=36.3
Q ss_pred Ceeeeccccc-cccccc-----ccccccCeecccCcccc----cCCCCCCccCCCC
Q 021988 52 ELLECPVCTN-LMYPPI-----HQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN 97 (304)
Q Consensus 52 ~~l~CpIC~~-~l~~Pi-----~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~ 97 (304)
+.+.||||++ .+..|+ ..| ||.||..|+.++ ...||.||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVC--GHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTT--CCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCC--CCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4578999999 899883 356 999999999876 2579999998753
No 41
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.39 E-value=2.2e-08 Score=73.71 Aligned_cols=47 Identities=26% Similarity=0.628 Sum_probs=40.7
Q ss_pred cCCCCeeeeccccccccccc-ccccccCe-ecccCcccccCCCCCCccCCCC
Q 021988 48 NGVHELLECPVCTNLMYPPI-HQCPNGHT-LCSNCKNRVHNCCPTCRFDLGN 97 (304)
Q Consensus 48 ~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~-fC~~C~~~~~~~CP~Cr~~~~~ 97 (304)
+.+.+.+.|+||++.+.+|+ +.| ||. ||..|+.++ ..||.||.++..
T Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~pC--gH~~~C~~C~~~~-~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 19 RRLQEEKLCKICMDRNIAIVFVPC--GHLVTCKQCAEAV-DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHHTBCTTTSSSBCCEEEETT--CCBCCCHHHHTTC-SBCTTTCCBCSE
T ss_pred hcCccCCCCCCCCCCCCCEEEcCC--CChhHHHHhhhcC-ccCCCcCcCccC
Confidence 45567789999999999997 466 999 999999987 899999998764
No 42
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=1.3e-07 Score=68.96 Aligned_cols=51 Identities=22% Similarity=0.476 Sum_probs=40.0
Q ss_pred ccCCCCeeeeccccccccccc--ccccccCeecccCcccc---cCCCCCCccCCCC
Q 021988 47 NNGVHELLECPVCTNLMYPPI--HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN 97 (304)
Q Consensus 47 ~~~l~~~l~CpIC~~~l~~Pi--~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 97 (304)
..++.+...|+||++.+..+. ...+|||.||..|+.++ ...||.||.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 356677789999999998774 22234999999999876 4689999998754
No 43
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=2.3e-08 Score=73.76 Aligned_cols=47 Identities=26% Similarity=0.628 Sum_probs=40.3
Q ss_pred cCCCCeeeeccccccccccc-ccccccCe-ecccCcccccCCCCCCccCCCC
Q 021988 48 NGVHELLECPVCTNLMYPPI-HQCPNGHT-LCSNCKNRVHNCCPTCRFDLGN 97 (304)
Q Consensus 48 ~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~-fC~~C~~~~~~~CP~Cr~~~~~ 97 (304)
+++.+.+.|+||++.+.+|+ +.| ||. ||..|+.+. ..||.||.++..
T Consensus 20 ~~~~~~~~C~IC~~~~~~~~~~pC--gH~~~C~~C~~~~-~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 20 RRLQEEKLCKICMDRNIAIVFVPC--GHLVTCKQCAEAV-DKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHHSCSSSCSSCCCBCCSSS--CCCCBCHHHHHHC-SBCTTTCCBCCC
T ss_pred HcCCCCCCCCcCCCCCCCEEEecC--CCHHHHHHHhhCC-CCCccCCceecC
Confidence 45567789999999999997 477 999 999999875 799999998764
No 44
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.35 E-value=2.9e-07 Score=67.80 Aligned_cols=51 Identities=33% Similarity=0.591 Sum_probs=39.3
Q ss_pred ccCCCCeeeeccccccccccc--ccccccCeecccCcccc---cCCCCCCccCCCC
Q 021988 47 NNGVHELLECPVCTNLMYPPI--HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN 97 (304)
Q Consensus 47 ~~~l~~~l~CpIC~~~l~~Pi--~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 97 (304)
.+.+.+.+.|+||++.+..+. ..-+|||.||..|+.++ ...||.||..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 345667789999999998663 22234999999999875 4689999998754
No 45
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.34 E-value=6.1e-08 Score=68.35 Aligned_cols=44 Identities=34% Similarity=0.952 Sum_probs=36.4
Q ss_pred Ceeeecccccccccc-------c-ccccccCeecccCcccc---cCCCCCCccCCCC
Q 021988 52 ELLECPVCTNLMYPP-------I-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN 97 (304)
Q Consensus 52 ~~l~CpIC~~~l~~P-------i-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 97 (304)
+.+.|+||++.+.+| + ..| ||.||..|+.++ ...||.||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETT--SCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCC--CCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 457899999999876 3 356 999999999876 4689999998764
No 46
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=8.1e-08 Score=69.35 Aligned_cols=49 Identities=27% Similarity=0.714 Sum_probs=40.2
Q ss_pred ccCCCCeeeecccccccccccccccccCeecccCcccc---cCCCCCCccCCCC
Q 021988 47 NNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN 97 (304)
Q Consensus 47 ~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 97 (304)
.+++.+.+.|+||++.+.+-++.| ||.||..|+.++ ...||.||.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRADLILPC--AHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCSEEETT--TEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred hhcCCCCCCCeeCCcCccCcccCC--CCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 456777889999999999832566 999999999876 3689999998764
No 47
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.32 E-value=2.3e-07 Score=63.59 Aligned_cols=45 Identities=29% Similarity=0.722 Sum_probs=35.8
Q ss_pred CCCeeeeccccccccc---cc-cc-ccccCeecccCcccc---cCCCCCCccCCC
Q 021988 50 VHELLECPVCTNLMYP---PI-HQ-CPNGHTLCSNCKNRV---HNCCPTCRFDLG 96 (304)
Q Consensus 50 l~~~l~CpIC~~~l~~---Pi-~q-C~~GH~fC~~C~~~~---~~~CP~Cr~~~~ 96 (304)
+.+...|+||++.+.. ++ +. | ||.||..|+.++ ...||.||.++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C--~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRC--GHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSS--CCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCC--CCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4566789999999986 43 33 5 999999999876 478999998763
No 48
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=3.9e-07 Score=66.11 Aligned_cols=47 Identities=30% Similarity=0.615 Sum_probs=39.4
Q ss_pred cCCCCeeeeccccccccccc-ccccccCe-ecccCcccccCCCCCCccCCCC
Q 021988 48 NGVHELLECPVCTNLMYPPI-HQCPNGHT-LCSNCKNRVHNCCPTCRFDLGN 97 (304)
Q Consensus 48 ~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~-fC~~C~~~~~~~CP~Cr~~~~~ 97 (304)
....+...|+||++...+++ +.| ||. +|..|.... ..||.||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~v~~pC--gH~~~C~~C~~~~-~~CP~CR~~i~~ 58 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVNWVLLPC--RHTCLCDGCVKYF-QQCPMCRQFVQE 58 (68)
T ss_dssp CSCCCSSCCSSSSSSCCCCEETTT--TBCCSCTTHHHHC-SSCTTTCCCCCC
T ss_pred ccCCCCCCCCCcCcCCCCEEEECC--CChhhhHHHHhcC-CCCCCCCcchhc
Confidence 34455678999999999987 578 999 999999875 799999998864
No 49
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.26 E-value=4.9e-07 Score=66.17 Aligned_cols=47 Identities=28% Similarity=0.613 Sum_probs=37.9
Q ss_pred CCCCeeeecccccccccc--c--ccccccCeecccCcccc---cCCCCCCccCCCC
Q 021988 49 GVHELLECPVCTNLMYPP--I--HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN 97 (304)
Q Consensus 49 ~l~~~l~CpIC~~~l~~P--i--~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 97 (304)
...+...|+||++.+..+ + +.| ||.||..|+.++ ...||.||.++..
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C--~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPC--NHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETT--TEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECC--CCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 345667899999999876 2 355 999999999876 4789999998753
No 50
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.24 E-value=3e-07 Score=62.93 Aligned_cols=43 Identities=26% Similarity=0.578 Sum_probs=34.7
Q ss_pred Ceeeeccccccccc----cc-ccccccCeecccCcccc---cCCCCCCccCCC
Q 021988 52 ELLECPVCTNLMYP----PI-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLG 96 (304)
Q Consensus 52 ~~l~CpIC~~~l~~----Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~ 96 (304)
+...|+||++.+.+ ++ +.| ||.||..|+.++ ...||.||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPC--GHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTT--SCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCC--CCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 44679999999865 43 466 999999999876 478999998764
No 51
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.24 E-value=3.7e-07 Score=65.37 Aligned_cols=44 Identities=25% Similarity=0.605 Sum_probs=36.5
Q ss_pred Ceeeeccccccccccc--ccccccCeecccCcccc---cCCCCCCccCCCC
Q 021988 52 ELLECPVCTNLMYPPI--HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN 97 (304)
Q Consensus 52 ~~l~CpIC~~~l~~Pi--~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 97 (304)
+...|+||++.+.+|+ ..| ||.||..|+.++ ...||.||.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C--~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPC--LHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTT--TEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCC--CCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3457999999999874 456 999999999865 4789999998764
No 52
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.15 E-value=8.4e-07 Score=63.71 Aligned_cols=50 Identities=20% Similarity=0.547 Sum_probs=37.2
Q ss_pred cCCCCeeeeccccccccc--ccccccccCeecccCcccc---cCCCCCCccCCCC
Q 021988 48 NGVHELLECPVCTNLMYP--PIHQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN 97 (304)
Q Consensus 48 ~~l~~~l~CpIC~~~l~~--Pi~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 97 (304)
++..+...|+||++.+.. ++..-+|||.||..|+.++ ...||.||..+..
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 345566789999998863 2222234999999999876 4789999998754
No 53
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.10 E-value=3.9e-07 Score=73.23 Aligned_cols=45 Identities=33% Similarity=0.893 Sum_probs=37.9
Q ss_pred CCeeeecccccccccc-------c-ccccccCeecccCcccc---cCCCCCCccCCCC
Q 021988 51 HELLECPVCTNLMYPP-------I-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN 97 (304)
Q Consensus 51 ~~~l~CpIC~~~l~~P-------i-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 97 (304)
.+.+.|+||++.+.+| + ..| ||.||..|+.++ ...||.||..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETT--CCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCC--CChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 4568899999999988 4 456 999999999876 4689999998864
No 54
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.09 E-value=5.5e-07 Score=81.62 Aligned_cols=64 Identities=19% Similarity=0.344 Sum_probs=51.0
Q ss_pred cccCCCCeeeecccccccccccc--cccccCeecccCccccc-----CCCCC--CccCCCC---ccchHHHHHhhhcc
Q 021988 46 SNNGVHELLECPVCTNLMYPPIH--QCPNGHTLCSNCKNRVH-----NCCPT--CRFDLGN---IRCLALEKVAESLE 111 (304)
Q Consensus 46 ~~~~l~~~l~CpIC~~~l~~Pi~--qC~~GH~fC~~C~~~~~-----~~CP~--Cr~~~~~---~r~~~le~~l~~l~ 111 (304)
.+......+.||||+++|++||. .| ||+||+.|+.++. ..||+ |+..+.. .+|..|.++++..+
T Consensus 174 ~v~~~~~el~CPIcl~~f~DPVts~~C--GHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k 249 (267)
T 3htk_C 174 QIEGGKIELTCPITCKPYEAPLISRKC--NHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAK 249 (267)
T ss_dssp CCCSSBCCSBCTTTSSBCSSEEEESSS--CCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHH
T ss_pred eecCCceeeECcCccCcccCCeeeCCC--CCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHH
Confidence 34556788999999999999984 56 9999999998652 36999 9998754 57888888776643
No 55
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.08 E-value=2.7e-07 Score=68.88 Aligned_cols=46 Identities=30% Similarity=0.775 Sum_probs=39.2
Q ss_pred CCCCeeeeccccccccccc-ccccccCe-ecccCcccccCCCCCCccCCCC
Q 021988 49 GVHELLECPVCTNLMYPPI-HQCPNGHT-LCSNCKNRVHNCCPTCRFDLGN 97 (304)
Q Consensus 49 ~l~~~l~CpIC~~~l~~Pi-~qC~~GH~-fC~~C~~~~~~~CP~Cr~~~~~ 97 (304)
.+.+...|+||++.+.+|+ +.| ||. ||..|..++ ..||.||.++..
T Consensus 14 ~l~~~~~C~IC~~~~~~~v~~pC--gH~~~C~~C~~~~-~~CP~Cr~~i~~ 61 (79)
T 2yho_A 14 KLKEAMLCMVCCEEEINSTFCPC--GHTVCCESCAAQL-QSCPVCRSRVEH 61 (79)
T ss_dssp HHHHHTBCTTTSSSBCCEEEETT--CBCCBCHHHHTTC-SBCTTTCCBCCE
T ss_pred cCCCCCEeEEeCcccCcEEEECC--CCHHHHHHHHHhc-CcCCCCCchhhC
Confidence 4456678999999999997 467 999 999999987 699999998764
No 56
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.08 E-value=8.5e-07 Score=67.64 Aligned_cols=45 Identities=24% Similarity=0.586 Sum_probs=36.3
Q ss_pred CCCeeeeccccccccc---cc-ccccccCeecccCcccc---cCCCCCCccCCC
Q 021988 50 VHELLECPVCTNLMYP---PI-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLG 96 (304)
Q Consensus 50 l~~~l~CpIC~~~l~~---Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~ 96 (304)
..+...|+||++.+.. ++ +.| ||.||..|+.++ ...||.||..+.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C--~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPC--HHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETT--TEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCC--CChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 4567789999998876 43 455 999999999876 468999999864
No 57
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.98 E-value=1.8e-06 Score=68.07 Aligned_cols=43 Identities=21% Similarity=0.524 Sum_probs=34.2
Q ss_pred eeeeccccccccccc-------------------ccccccCeecccCccccc--------CCCCCCccCCCC
Q 021988 53 LLECPVCTNLMYPPI-------------------HQCPNGHTLCSNCKNRVH--------NCCPTCRFDLGN 97 (304)
Q Consensus 53 ~l~CpIC~~~l~~Pi-------------------~qC~~GH~fC~~C~~~~~--------~~CP~Cr~~~~~ 97 (304)
...|+||++.|..|. ..| ||.||..|+.++. ..||.||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C--~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKC--SHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSS--CCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCC--CCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 358999999997652 345 9999999998652 479999998754
No 58
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.90 E-value=2.2e-06 Score=81.01 Aligned_cols=47 Identities=28% Similarity=0.685 Sum_probs=40.6
Q ss_pred cCCCCeeeeccccccccccc-ccccccCe-ecccCcccccCCCCCCccCCCC
Q 021988 48 NGVHELLECPVCTNLMYPPI-HQCPNGHT-LCSNCKNRVHNCCPTCRFDLGN 97 (304)
Q Consensus 48 ~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~-fC~~C~~~~~~~CP~Cr~~~~~ 97 (304)
+.+.+.+.|+||.+.+.+|+ +.| ||. ||..|+.++ ..||.||.++..
T Consensus 290 ~~l~~~~~C~IC~~~~~~~v~lpC--gH~~fC~~C~~~~-~~CP~CR~~i~~ 338 (345)
T 3t6p_A 290 RRLQEERTCKVCMDKEVSVVFIPC--GHLVVCQECAPSL-RKCPICRGIIKG 338 (345)
T ss_dssp HHHHTTCBCTTTSSSBCCEEEETT--CCEEECTTTGGGC-SBCTTTCCBCCE
T ss_pred HhCcCCCCCCccCCcCCceEEcCC--CChhHhHHHHhcC-CcCCCCCCCccC
Confidence 34567789999999999997 466 999 999999987 899999998764
No 59
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.80 E-value=3.5e-06 Score=60.11 Aligned_cols=44 Identities=23% Similarity=0.598 Sum_probs=36.3
Q ss_pred Ceeeecccccccccccc---cccccCe-ecccCcccc---cCCCCCCccCCCC
Q 021988 52 ELLECPVCTNLMYPPIH---QCPNGHT-LCSNCKNRV---HNCCPTCRFDLGN 97 (304)
Q Consensus 52 ~~l~CpIC~~~l~~Pi~---qC~~GH~-fC~~C~~~~---~~~CP~Cr~~~~~ 97 (304)
+...|+||++...++++ .| ||. +|..|..++ ...||.||.++..
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pC--gH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKT--GHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTE--EEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCEEEECCCC--CChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 44579999999999974 56 999 899999876 3579999998753
No 60
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.75 E-value=6.1e-06 Score=78.90 Aligned_cols=46 Identities=24% Similarity=0.649 Sum_probs=38.4
Q ss_pred CCCeeeeccccccccccc-ccccccCeecccCcccc----cCCCCCCccCCCC
Q 021988 50 VHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN 97 (304)
Q Consensus 50 l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~ 97 (304)
......|+||.+.+.+|+ ..| ||.||..|+..+ ...||.||.++..
T Consensus 329 ~~~~~~C~ICle~~~~pv~lpC--GH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 329 GSTFQLCKICAENDKDVKIEPC--GHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp TTSSSBCTTTSSSBCCEEEETT--CCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred cCCCCCCCccCcCCCCeEEeCC--CChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 444579999999999996 567 999999999764 3789999998764
No 61
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.73 E-value=4.6e-06 Score=59.32 Aligned_cols=43 Identities=26% Similarity=0.649 Sum_probs=35.5
Q ss_pred eeeeccccccccccc-c--cccccCe-ecccCccccc---CCCCCCccCCCC
Q 021988 53 LLECPVCTNLMYPPI-H--QCPNGHT-LCSNCKNRVH---NCCPTCRFDLGN 97 (304)
Q Consensus 53 ~l~CpIC~~~l~~Pi-~--qC~~GH~-fC~~C~~~~~---~~CP~Cr~~~~~ 97 (304)
...|+||++...+++ + .| ||. +|..|..++. ..||.||.++..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pC--gH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRT--GHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTE--EEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CCCCcccCCcCCCeEEEecCC--CCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 347999999999885 4 56 998 9999998762 489999998753
No 62
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.72 E-value=6.5e-06 Score=63.86 Aligned_cols=54 Identities=20% Similarity=0.341 Sum_probs=48.1
Q ss_pred ccccCCCCCCCCccccCccchhccccccCcccccCCCCCCCCccccChhhHHHHhhh
Q 021988 110 LELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKD 166 (304)
Q Consensus 110 l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~p~~CP~~g~~C~~~g~~~~L~~Hl~~ 166 (304)
..+.||| .|...+...++++|...|+...+.|++...||.+++.+.+|..|++.
T Consensus 36 ~~i~CP~---~Cga~i~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~ 89 (100)
T 2yre_A 36 DLIGCPL---VCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEM 89 (100)
T ss_dssp CEEECTT---CCSCEEEHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHT
T ss_pred eeeeCCc---ccCCeeehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhh
Confidence 4788987 69889999999999999999999999988889999999999999874
No 63
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=97.71 E-value=2.4e-05 Score=57.31 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=45.0
Q ss_pred ccccCCCCCCCCccccCccchhcccc-ccCcccccCCCCCCCCccccChhhHHHHhh
Q 021988 110 LELPCKYQSLGCHDIFPYYGKLKHEQ-HCRFRPYNCPYAGSECSVTGDIPTLVAHLK 165 (304)
Q Consensus 110 l~v~C~~~~~GC~~~~~~~~~~~He~-~C~~~p~~CP~~g~~C~~~g~~~~L~~Hl~ 165 (304)
..+.|++ ||+..+...++++|++ +|+++++.|++ |+....+.+|..|..
T Consensus 15 ~~v~C~~---~C~~~v~r~~l~~H~~~~C~~r~v~C~~----C~~~~~~~~l~~H~~ 64 (76)
T 2yuc_A 15 NVIPCPN---RCPMKLSRRDLPAHLQHDCPKRRLKCEF----CGCDFSGEAYESHEG 64 (76)
T ss_dssp SCCBCTT---CCSCBCCSSSSTTTTTTSCTTSCCCCSS----SCCCCCHHHHHHTTT
T ss_pred cccCCCc---cccHHhhHhHHHhhCHhhCCCcceECCC----CCCccCHHHHHHHHh
Confidence 5788886 8999999999999998 99999999997 999999999999984
No 64
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.68 E-value=5.7e-06 Score=66.25 Aligned_cols=48 Identities=29% Similarity=0.694 Sum_probs=38.3
Q ss_pred CCCeeeeccccccccccc------ccccccCeecccCcccc---cCCCCCCccCCCC
Q 021988 50 VHELLECPVCTNLMYPPI------HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN 97 (304)
Q Consensus 50 l~~~l~CpIC~~~l~~Pi------~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 97 (304)
..+.+.|+||.+.+..|. ...++||.||..|+.++ ...||.||.++..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 356788999999998761 23445999999999876 4789999998764
No 65
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=1.5e-05 Score=59.44 Aligned_cols=45 Identities=22% Similarity=0.454 Sum_probs=34.0
Q ss_pred Ceeeecccccccccc--------------cccccccCeecccCcccc---cCCCCCCccCCC
Q 021988 52 ELLECPVCTNLMYPP--------------IHQCPNGHTLCSNCKNRV---HNCCPTCRFDLG 96 (304)
Q Consensus 52 ~~l~CpIC~~~l~~P--------------i~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~ 96 (304)
+.-.|+||++.+.++ +....+||.|+..|+.++ ...||.||.++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 445699999998763 222224999999999876 468999999875
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.55 E-value=7.7e-06 Score=62.51 Aligned_cols=41 Identities=22% Similarity=0.526 Sum_probs=32.7
Q ss_pred Ceeeeccccccccccc-c---cccccCeecccCcccc-----------cCCCCC--CccC
Q 021988 52 ELLECPVCTNLMYPPI-H---QCPNGHTLCSNCKNRV-----------HNCCPT--CRFD 94 (304)
Q Consensus 52 ~~l~CpIC~~~l~~Pi-~---qC~~GH~fC~~C~~~~-----------~~~CP~--Cr~~ 94 (304)
+.+.|+||++.+..|. + .| ||.||..|+... ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~C--gH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQC--QCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTT--TEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCC--CCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4678999999999885 3 36 999999998753 136998 9887
No 67
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=2.9e-05 Score=60.22 Aligned_cols=57 Identities=21% Similarity=0.366 Sum_probs=43.1
Q ss_pred CCC-CCccCCCCccchHHH--HHhhhccccCCCCCCCCccccCccchhccccccCcccccCC
Q 021988 87 CCP-TCRFDLGNIRCLALE--KVAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCP 145 (304)
Q Consensus 87 ~CP-~Cr~~~~~~r~~~le--~~l~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~p~~CP 145 (304)
.|| .|...+. |...-+ .+.-...++|+|+.+||+..+...++.+||+.|+-..+.|.
T Consensus 39 ~CP~~Cga~i~--rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~CPas~v~~~ 98 (100)
T 2yre_A 39 GCPLVCGAVFH--SCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEMCPASVSGPS 98 (100)
T ss_dssp ECTTCCSCEEE--HHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHTCGGGCCCCC
T ss_pred eCCcccCCeee--hhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhhCCceeEecC
Confidence 477 6755322 222211 33556789999999999999999999999999999888775
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.19 E-value=6.5e-05 Score=53.11 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=36.6
Q ss_pred eeeecccccccccccccccccCeecccCcccc---cCCCCCCccCCCC
Q 021988 53 LLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN 97 (304)
Q Consensus 53 ~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 97 (304)
.|.|||++++|.+|+..-.+||+|++.|+.++ ...||..+.++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 47899999999999743145999999999987 3679999998753
No 69
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.09 E-value=0.00012 Score=57.49 Aligned_cols=45 Identities=18% Similarity=0.369 Sum_probs=34.4
Q ss_pred eeeecccccccccc-----------------cccccccCeecccCcccc---cCCCCCCccCCCC
Q 021988 53 LLECPVCTNLMYPP-----------------IHQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN 97 (304)
Q Consensus 53 ~l~CpIC~~~l~~P-----------------i~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 97 (304)
.-.|+||++.+..+ +..-+|||.|+..|+.++ ...||.||..+..
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 34699999998865 211234999999999976 4789999998653
No 70
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.99 E-value=0.00011 Score=58.82 Aligned_cols=43 Identities=19% Similarity=0.364 Sum_probs=0.0
Q ss_pred eeeccccccccccc-----------------ccccccCeecccCcccc---cCCCCCCccCCC
Q 021988 54 LECPVCTNLMYPPI-----------------HQCPNGHTLCSNCKNRV---HNCCPTCRFDLG 96 (304)
Q Consensus 54 l~CpIC~~~l~~Pi-----------------~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~ 96 (304)
-.|+||++.+..+- ...+|||.|+..|+.++ ...||.||.++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp ---------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 47999999997642 11234999999999986 478999999864
No 71
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.84 E-value=0.0002 Score=60.29 Aligned_cols=51 Identities=20% Similarity=0.380 Sum_probs=44.7
Q ss_pred hhccccCCCCCCCCccccCccchhccc-cccCcccccCCCCCCCCccccChhhHHHHhhh
Q 021988 108 ESLELPCKYQSLGCHDIFPYYGKLKHE-QHCRFRPYNCPYAGSECSVTGDIPTLVAHLKD 166 (304)
Q Consensus 108 ~~l~v~C~~~~~GC~~~~~~~~~~~He-~~C~~~p~~CP~~g~~C~~~g~~~~L~~Hl~~ 166 (304)
.-..++|+ ||++.+...++..|+ ..|+++++.|++ |+......+|..|...
T Consensus 107 ~~~~v~C~----~C~~~~~r~~l~~H~~~~C~~r~~~C~~----C~~~~~~~~l~~H~~~ 158 (170)
T 3hcs_A 107 EFALMDCP----QCQRPFQKFHINIHILKDCPRRQVSCDN----CAASMAFEDKEIHDQN 158 (170)
T ss_dssp TTSEEECT----TTCCEEEGGGHHHHHHHTCTTCEEECTT----TCCEEEGGGHHHHHTT
T ss_pred CceeeECC----CCChHHHHHHHHHHhhhhCCCCCeECCC----CCCccCHHHHHhHHHh
Confidence 34567786 899999999999999 599999999996 9999999999999854
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.48 E-value=0.0014 Score=50.68 Aligned_cols=79 Identities=22% Similarity=0.388 Sum_probs=52.9
Q ss_pred eecccccccccc--cccccccCeecccCcccc----cCCCCCCccCCCCccchHHHHHhhhccccCCCCCCCCccccCcc
Q 021988 55 ECPVCTNLMYPP--IHQCPNGHTLCSNCKNRV----HNCCPTCRFDLGNIRCLALEKVAESLELPCKYQSLGCHDIFPYY 128 (304)
Q Consensus 55 ~CpIC~~~l~~P--i~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~~r~~~le~~l~~l~v~C~~~~~GC~~~~~~~ 128 (304)
-|++|..++..- +..| .|.||.+|...+ .+.||.|+.++.......+ .-.+-|+.
T Consensus 3 fC~~C~~Pi~iygRmIPC--kHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~-----~~if~C~~------------ 63 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPC--KHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTR-----GSLFMCSI------------ 63 (101)
T ss_dssp BCTTTCSBCSEEEEEETT--CCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEG-----GGCCCCCC------------
T ss_pred ecCccCCCeEEEeeeccc--cccHHHHHHHHHHhccCCCCcCcCCeeeeeEEecc-----CCEEECCC------------
Confidence 489999988754 3577 999999999653 3689999998865332111 12233431
Q ss_pred chhccccccCcccccCCCCCCCCcccc-ChhhHHHHhhhhCCCC
Q 021988 129 GKLKHEQHCRFRPYNCPYAGSECSVTG-DIPTLVAHLKDDHQVD 171 (304)
Q Consensus 129 ~~~~He~~C~~~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~~ 171 (304)
.. +|.... +..+|..|....|...
T Consensus 64 -----------------~~--~CkrtyLs~rdlqaHI~~~H~~~ 88 (101)
T 3vk6_A 64 -----------------VQ--GCKRTYLSQRDLQAHINHRHMRA 88 (101)
T ss_dssp -----------------CC--CCCCCCSSHHHHHHHHHHHTTTS
T ss_pred -----------------CC--CHHHHhcCHHHHHHHHHHHhhhc
Confidence 21 355443 5689999999999743
No 73
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=96.41 E-value=0.00093 Score=48.62 Aligned_cols=42 Identities=29% Similarity=0.483 Sum_probs=36.4
Q ss_pred ccchhccccccCcccccCCCCCCCCccccChhhHHHHhhhhCCCC
Q 021988 127 YYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVD 171 (304)
Q Consensus 127 ~~~~~~He~~C~~~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~~ 171 (304)
..+++.|++.|+|+++.||. +|+....+.+|..|+.......
T Consensus 2 ~~~l~~H~~~C~~~~v~C~~---~C~~~v~r~~l~~H~~~~C~~r 43 (76)
T 2yuc_A 2 SSGSSGHLNTCSFNVIPCPN---RCPMKLSRRDLPAHLQHDCPKR 43 (76)
T ss_dssp CCSCSCCCCCCCCSCCBCTT---CCSCBCCSSSSTTTTTTSCTTS
T ss_pred chHHHHHHHHCCCcccCCCc---cccHHhhHhHHHhhCHhhCCCc
Confidence 35788999999999999996 4999999999999998766644
No 74
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.33 E-value=0.00033 Score=51.03 Aligned_cols=49 Identities=20% Similarity=0.275 Sum_probs=42.4
Q ss_pred ccccCCCCCCCCccccCccchhccccccCcccccCCCCCCCCccccChhhHHHHhhh
Q 021988 110 LELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKD 166 (304)
Q Consensus 110 l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~p~~CP~~g~~C~~~g~~~~L~~Hl~~ 166 (304)
-++.|++ |...+...++..|+..|+.+|+.|+. |+....+.+|..|+..
T Consensus 16 r~~~C~~----C~~~~~~~~L~~H~~~c~~~~~~C~~----C~~~~~~~~l~~H~~~ 64 (75)
T 2d9k_A 16 RLAVCQH----CDLELSILKLKEHEDYCGARTELCGN----CGRNVLVKDLKTHPEV 64 (75)
T ss_dssp CCEECSS----SCCEECHHHHHHHHHHHHHCEEECSS----SCCEEETTGGGTHHHH
T ss_pred cccCCcc----cChHhhHHHHHHHHhHcCCCceEccc----CCCcCcHHHHHHHHHH
Confidence 4567775 88899999999999999999999996 8888888999999865
No 75
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.17 E-value=0.017 Score=42.21 Aligned_cols=44 Identities=20% Similarity=0.549 Sum_probs=33.6
Q ss_pred eeeecccccccccccccc-cccCeecccCcccc---c--CCCCCCccCCCC
Q 021988 53 LLECPVCTNLMYPPIHQC-PNGHTLCSNCKNRV---H--NCCPTCRFDLGN 97 (304)
Q Consensus 53 ~l~CpIC~~~l~~Pi~qC-~~GH~fC~~C~~~~---~--~~CP~Cr~~~~~ 97 (304)
.-.|.||++++.+- ..| .|+|.|=..|+.++ . ..||.|+.++..
T Consensus 15 i~~C~IC~~~i~~g-~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQG-QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSS-EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccC-CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 34699999999843 345 45899888899865 2 689999998753
No 76
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.74 E-value=0.014 Score=43.24 Aligned_cols=45 Identities=20% Similarity=0.537 Sum_probs=34.0
Q ss_pred Ceeeecccccccc--ccc-ccccc---cCeecccCccccc-----CCCCCCccCCC
Q 021988 52 ELLECPVCTNLMY--PPI-HQCPN---GHTLCSNCKNRVH-----NCCPTCRFDLG 96 (304)
Q Consensus 52 ~~l~CpIC~~~l~--~Pi-~qC~~---GH~fC~~C~~~~~-----~~CP~Cr~~~~ 96 (304)
+...|.||++-+. .++ ..|.+ +|.|-..|+.++. ..||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 3457999997764 454 46754 3999999999872 48999999875
No 77
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=94.11 E-value=0.011 Score=55.45 Aligned_cols=46 Identities=24% Similarity=0.544 Sum_probs=36.3
Q ss_pred CCeeeeccccccccc----cccccc---ccCeecccCccccc--------------CCCCCCccCCC
Q 021988 51 HELLECPVCTNLMYP----PIHQCP---NGHTLCSNCKNRVH--------------NCCPTCRFDLG 96 (304)
Q Consensus 51 ~~~l~CpIC~~~l~~----Pi~qC~---~GH~fC~~C~~~~~--------------~~CP~Cr~~~~ 96 (304)
...-.|+||+..+.+ |...|. |||.|=..|+.++. +.||.||.++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 456689999999886 555564 69999999998761 46999999865
No 78
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=92.02 E-value=0.32 Score=35.94 Aligned_cols=33 Identities=27% Similarity=0.670 Sum_probs=27.8
Q ss_pred CCCeeeeccccccccccc-ccccc--cCeecccCcc
Q 021988 50 VHELLECPVCTNLMYPPI-HQCPN--GHTLCSNCKN 82 (304)
Q Consensus 50 l~~~l~CpIC~~~l~~Pi-~qC~~--GH~fC~~C~~ 82 (304)
....|.|.+|.+-|.+-- +||+. +|.||-.|-.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr 47 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSR 47 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccH
Confidence 467789999999999875 69984 8999999964
No 79
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=91.48 E-value=0.085 Score=41.28 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=41.8
Q ss_pred HHHHHhhhccccCCCCCCCCccccCccchhcc---ccccCcccccCCCCCCCCccccChhhHHHHhhhhCCCC
Q 021988 102 ALEKVAESLELPCKYQSLGCHDIFPYYGKLKH---EQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVD 171 (304)
Q Consensus 102 ~le~~l~~l~v~C~~~~~GC~~~~~~~~~~~H---e~~C~~~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~~ 171 (304)
-+.+.+..-...||. |...+...++..- ++.=.-..+.||+. +|+|.+...+|..|++..+...
T Consensus 44 Ci~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n~--gC~~~~~~~~l~~H~~~c~~~~ 110 (118)
T 3hct_A 44 CIIKSIRDAGHKCPV----DNEILLENQLFPDNFAKREILSLMVKCPNE--GCLHKMELRHLEDHQAHCEFAL 110 (118)
T ss_dssp HHHHHHHHHCSBCTT----TCCBCCGGGCEECHHHHHHHHTSEEECSST--TCCCEEEGGGSGGGTSSSCC--
T ss_pred HHHHHHhhCCCCCCC----CCCCcCHHhcccCHHHHHHHccceeECCCC--CCCCEEeeHHHHHHHHHchhhh
Confidence 355555554558986 8877766543211 11222356889975 5999999999999998877643
No 80
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.96 E-value=0.13 Score=36.81 Aligned_cols=33 Identities=30% Similarity=0.507 Sum_probs=29.9
Q ss_pred cchhcccc-ccCcccccCCCCCCCCccccChhhHHHHh
Q 021988 128 YGKLKHEQ-HCRFRPYNCPYAGSECSVTGDIPTLVAHL 164 (304)
Q Consensus 128 ~~~~~He~-~C~~~p~~CP~~g~~C~~~g~~~~L~~Hl 164 (304)
.++..|+. .|+++|+.|++ |+......+|..|.
T Consensus 3 ~~L~~H~~~~c~~r~~~C~~----C~~~~~~~~L~~H~ 36 (75)
T 2d9k_A 3 SGSSGHEETECPLRLAVCQH----CDLELSILKLKEHE 36 (75)
T ss_dssp CCCSCCCCCCCCCCCEECSS----SCCEECHHHHHHHH
T ss_pred hHHHhhCcccCCCcccCCcc----cChHhhHHHHHHHH
Confidence 46889986 89999999996 99999999999998
No 81
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=89.95 E-value=0.29 Score=37.88 Aligned_cols=75 Identities=12% Similarity=0.195 Sum_probs=48.5
Q ss_pred CCCCCCccCCCC---cc------chHHHHHhhhccccCCCCCCCCccccCccchhcc----ccccCcccccCCCCCCCCc
Q 021988 86 NCCPTCRFDLGN---IR------CLALEKVAESLELPCKYQSLGCHDIFPYYGKLKH----EQHCRFRPYNCPYAGSECS 152 (304)
Q Consensus 86 ~~CP~Cr~~~~~---~r------~~~le~~l~~l~v~C~~~~~GC~~~~~~~~~~~H----e~~C~~~p~~CP~~g~~C~ 152 (304)
..||+|...+.. .+ ..-+.+.+......||. |...+...++... .+.=.-..+.||+. ||+
T Consensus 24 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~--gC~ 97 (116)
T 1rmd_A 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPS----CRYPCFPTDLESPVKSFLNILNSLMVKCPAQ--DCN 97 (116)
T ss_dssp TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTT----TCCBCCGGGCBCCCHHHHHHHHHCEEECCST--TCC
T ss_pred CCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCC----CCCCCCHhhccccHHHHHHHHHHhcCCCCCC--CCc
Confidence 457777766543 11 12356666555667886 8887776554321 12223346789986 599
Q ss_pred cccChhhHHHHhhh
Q 021988 153 VTGDIPTLVAHLKD 166 (304)
Q Consensus 153 ~~g~~~~L~~Hl~~ 166 (304)
|.+...++..|+..
T Consensus 98 ~~~~~~~~~~H~~~ 111 (116)
T 1rmd_A 98 EEVSLEKYNHHVSS 111 (116)
T ss_dssp CEEEHHHHHHHHHT
T ss_pred chhhHhHHHHHHHH
Confidence 99999999999975
No 82
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=89.02 E-value=0.23 Score=36.05 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=28.7
Q ss_pred CccccCc-cchhccccccCc---ccccCCCCCCCCcccc-ChhhHHHHhhhhCCC
Q 021988 121 CHDIFPY-YGKLKHEQHCRF---RPYNCPYAGSECSVTG-DIPTLVAHLKDDHQV 170 (304)
Q Consensus 121 C~~~~~~-~~~~~He~~C~~---~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 170 (304)
|...+.. ..+..|+..-.- .++.|+. |+... ....|..|++..|..
T Consensus 41 C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~----C~~~f~~~~~L~~H~~~~H~~ 91 (95)
T 2yt9_A 41 CGLRFKRKDRMSYHVRSHDGSVGKPYICQS----CGKGFSRPDHLNGHIKQVHSG 91 (95)
T ss_dssp SCCEESCHHHHHHHHHHHCCCCCSSBCCSS----SCCCBSSHHHHHHHHHHTSCC
T ss_pred CCCccCCHHHHHHHHHHhcCCCCCceECCC----ccchhCCHHHHHHHHHHhcCC
Confidence 5444432 234455543222 6788986 77765 457899999988874
No 83
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.87 E-value=0.13 Score=35.26 Aligned_cols=50 Identities=34% Similarity=0.685 Sum_probs=34.4
Q ss_pred cccCCCCCCCCccccCccchhccccccCcccccCC-CCCCCCcccc-ChhhHHHHhhhhC
Q 021988 111 ELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCP-YAGSECSVTG-DIPTLVAHLKDDH 168 (304)
Q Consensus 111 ~v~C~~~~~GC~~~~~~~~~~~He~~C~~~p~~CP-~~g~~C~~~g-~~~~L~~Hl~~~H 168 (304)
++.|+. |+..+....+..|+..+.-+|+.|+ . |+... .+..|..|++...
T Consensus 10 ~~~C~~----C~k~f~~~~L~~H~~~~~~~p~~C~~~----C~k~f~~~~~L~~H~~~hc 61 (66)
T 2eod_A 10 TQPCTY----CTKEFVFDTIQSHQYQCPRLPVACPNQ----CGVGTVAREDLPGHLKDSC 61 (66)
T ss_dssp EEECSS----SCCEEEHHHHHHHHHHCSSSEEECTTC----CSCCEEETTTHHHHHHTTS
T ss_pred Ceeccc----cCCccCHHHHHHHHHHcCCcCccCCcc----cCcccccHHHHHHHHHhhc
Confidence 455654 7766666667788877778888888 4 77653 4458888876533
No 84
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=88.80 E-value=0.099 Score=39.62 Aligned_cols=32 Identities=19% Similarity=0.560 Sum_probs=24.7
Q ss_pred Ceeeeccccc-ccccccccc-cccCeecccCccc
Q 021988 52 ELLECPVCTN-LMYPPIHQC-PNGHTLCSNCKNR 83 (304)
Q Consensus 52 ~~l~CpIC~~-~l~~Pi~qC-~~GH~fC~~C~~~ 83 (304)
+.+.|++|.+ ++.+|+..| .+||.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 4578999996 577887433 2399999999986
No 85
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=84.45 E-value=0.72 Score=34.32 Aligned_cols=37 Identities=24% Similarity=0.437 Sum_probs=24.0
Q ss_pred hhccccccCcccccCCCCCCCCcccc-ChhhHHHHhhhhCCC
Q 021988 130 KLKHEQHCRFRPYNCPYAGSECSVTG-DIPTLVAHLKDDHQV 170 (304)
Q Consensus 130 ~~~He~~C~~~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 170 (304)
+..|+.--.-+++.|+. |+... ....|..|++..|..
T Consensus 58 l~~H~~H~~~~~~~C~~----C~~~f~~~~~L~~H~~~~H~~ 95 (107)
T 1wjp_A 58 KQEHESKCEYKKLTCLE----CMRTFKSSFSIWRHQVEVHNQ 95 (107)
T ss_dssp HHHHHHHCSTGGGEEGG----GTEECSSHHHHHHHHHHTSCC
T ss_pred HHHHHHcCCCCCccCcc----ccchhCCHHHHHHHHHHHcCC
Confidence 34444322335778875 77765 447899999878864
No 86
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=81.98 E-value=1 Score=33.99 Aligned_cols=106 Identities=20% Similarity=0.297 Sum_probs=65.3
Q ss_pred Ceeeeccccccccccc-ccccccCeecccCcccccCCCCCCccCCCCccchHHHHH-----hhhccccCCCCCCCCcccc
Q 021988 52 ELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKV-----AESLELPCKYQSLGCHDIF 125 (304)
Q Consensus 52 ~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~~~CP~Cr~~~~~~r~~~le~~-----l~~l~v~C~~~~~GC~~~~ 125 (304)
..+.|++|...|.... +. -|.- .-.......|+.|...+....++..-.. ...-.+.|+. |+..+
T Consensus 6 ~~~~C~~C~~~f~~~~~l~---~H~~--~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~----C~~~f 76 (124)
T 2dlq_A 6 SGVECPTCHKKFLSKYYLK---VHNR--KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV----CQETF 76 (124)
T ss_dssp SSCCCTTTCCCCSSHHHHH---HHHH--HHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSS----SCCEE
T ss_pred CCCCCCCCCCcCCCHHHHH---HHHH--hCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCC----CCCcc
Confidence 3478999999888653 22 2210 0001113579999887765433322111 2234577875 88777
Q ss_pred Ccc-chhcccccc-CcccccCCCCCCCCcccc-ChhhHHHHhhhhCCC
Q 021988 126 PYY-GKLKHEQHC-RFRPYNCPYAGSECSVTG-DIPTLVAHLKDDHQV 170 (304)
Q Consensus 126 ~~~-~~~~He~~C-~~~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 170 (304)
... .+..|+..- .-+|+.|+. |+... ....|..|++..|..
T Consensus 77 ~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~H~~ 120 (124)
T 2dlq_A 77 RRRMELRLHMVSHTGEMPYKCSS----CSQQFMQKKDLQSHMIKLHSG 120 (124)
T ss_dssp SSHHHHHHHHHHHSSSCSEECSS----SCCEESSHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHcCCCCCccCCC----ccchhCCHHHHHHHHHHHCCC
Confidence 544 567787542 346889986 87766 447899999988874
No 87
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=80.43 E-value=2.7 Score=30.77 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=18.4
Q ss_pred ccccCCCCCCCCcccc-ChhhHHHHhhhhCC
Q 021988 140 RPYNCPYAGSECSVTG-DIPTLVAHLKDDHQ 169 (304)
Q Consensus 140 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 169 (304)
+++.|+. |+... ....|..|++..+.
T Consensus 72 ~~~~C~~----C~~~f~~~~~L~~H~~~H~~ 98 (106)
T 2ee8_A 72 KPFKCQE----CGKGFCQSRTLAVHKTLHMQ 98 (106)
T ss_dssp CTTSCSS----SCCCCSSHHHHHHHHHHTTS
T ss_pred CCeECCC----cCCcccCHHHHHHHHHHhCC
Confidence 5678886 76655 45789999876554
No 88
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=79.33 E-value=2.5 Score=33.27 Aligned_cols=115 Identities=15% Similarity=0.236 Sum_probs=66.5
Q ss_pred cCCCCeeeeccccccccccc-ccc--cccCee-----cccCcccccCCCCCCccCCCCccchH--HHHHhhhccccCCCC
Q 021988 48 NGVHELLECPVCTNLMYPPI-HQC--PNGHTL-----CSNCKNRVHNCCPTCRFDLGNIRCLA--LEKVAESLELPCKYQ 117 (304)
Q Consensus 48 ~~l~~~l~CpIC~~~l~~Pi-~qC--~~GH~f-----C~~C~~~~~~~CP~Cr~~~~~~r~~~--le~~l~~l~v~C~~~ 117 (304)
++-...+.|++|...|.... +.- ..-|.- ...|. ...|+.|...+.....+. +..-...-.+.|+.
T Consensus 20 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~---~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~- 95 (155)
T 2rpc_A 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY---WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPF- 95 (155)
T ss_dssp CTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCC---BTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSC-
T ss_pred chhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCcccc---ccCCCCcccccCCHHHHHHHHHhcCCCCcccCCc-
Confidence 34455678999999988653 210 000210 01110 147999988876533322 22233345677874
Q ss_pred CCCCccccCc-cchhcccccc-CcccccCCCCCCCCccccC-hhhHHHHhhhhCC
Q 021988 118 SLGCHDIFPY-YGKLKHEQHC-RFRPYNCPYAGSECSVTGD-IPTLVAHLKDDHQ 169 (304)
Q Consensus 118 ~~GC~~~~~~-~~~~~He~~C-~~~p~~CP~~g~~C~~~g~-~~~L~~Hl~~~H~ 169 (304)
.+|...+.. ..+..|+..- .-+++.|+.. +|+.... ...|..|++..+.
T Consensus 96 -~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~--~C~k~f~~~~~L~~H~~~H~~ 147 (155)
T 2rpc_A 96 -PGCGKIFARSENLKIHKRTHTGEKPFKCEFE--GCDRRFANSSDRKKHMHVHTS 147 (155)
T ss_dssp -TTTCCEESCHHHHHHHHTTTCSSCSBCCSST--TCCCCBSSHHHHHHSSTTTTS
T ss_pred -CCCCCccCCHHHHHHHHHhhCCCCCccCCCC--CCCCccCCHHHHHHHHHHhcC
Confidence 268887754 4567787643 3467899863 3777664 4788999875443
No 89
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=78.66 E-value=2.1 Score=32.09 Aligned_cols=77 Identities=21% Similarity=0.291 Sum_probs=50.6
Q ss_pred CCCCCCccCCCCccchH--HHHHhhhccccCCCCCCCCccccCc-cchhccccc----cCcccccCCCCCCCCcccc-Ch
Q 021988 86 NCCPTCRFDLGNIRCLA--LEKVAESLELPCKYQSLGCHDIFPY-YGKLKHEQH----CRFRPYNCPYAGSECSVTG-DI 157 (304)
Q Consensus 86 ~~CP~Cr~~~~~~r~~~--le~~l~~l~v~C~~~~~GC~~~~~~-~~~~~He~~----C~~~p~~CP~~g~~C~~~g-~~ 157 (304)
..|+.|...+.....+. +..-...-++.|+. |...+.. ..+..|+.. =.-.++.|+. |+... ..
T Consensus 8 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~----C~~~f~~~ 79 (124)
T 2dlq_A 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPK----CGKCYFRKENLLEHEARNCMNRSEQVFTCSV----CQETFRRR 79 (124)
T ss_dssp CCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTT----TCCBCSSHHHHHHHHHHCCCCSCCCCEECSS----SCCEESSH
T ss_pred CCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCC----CCchhcCHHHHHHHHhhhhcCCCCCCeECCC----CCCccCCH
Confidence 57999988876543322 23333345678875 8877644 467788753 3446788986 87765 45
Q ss_pred hhHHHHhhhhCCC
Q 021988 158 PTLVAHLKDDHQV 170 (304)
Q Consensus 158 ~~L~~Hl~~~H~~ 170 (304)
..|..|+...+..
T Consensus 80 ~~l~~H~~~h~~~ 92 (124)
T 2dlq_A 80 MELRLHMVSHTGE 92 (124)
T ss_dssp HHHHHHHHHHSSS
T ss_pred HHHHHHHHHcCCC
Confidence 7899999876553
No 90
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=78.64 E-value=0.57 Score=35.78 Aligned_cols=38 Identities=34% Similarity=0.907 Sum_probs=28.5
Q ss_pred eeecccccccccccccccccCeecccCcccc--cCCCCCCccCCC
Q 021988 54 LECPVCTNLMYPPIHQCPNGHTLCSNCKNRV--HNCCPTCRFDLG 96 (304)
Q Consensus 54 l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~--~~~CP~Cr~~~~ 96 (304)
..||.|...|..- .|+..|..|-... ...||.|.+++.
T Consensus 33 ~~CP~Cq~eL~~~-----g~~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQD-----NGHARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEE-----TTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccCccCCCcceec-----CCEEECccccchhhccccCcchhhHHH
Confidence 7899999987641 3555688997754 367999988764
No 91
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.59 E-value=3.5 Score=30.68 Aligned_cols=39 Identities=18% Similarity=0.310 Sum_probs=25.9
Q ss_pred cchhccccc-cCcccccCCCCCCCCcccc-ChhhHHHHhhhhCCC
Q 021988 128 YGKLKHEQH-CRFRPYNCPYAGSECSVTG-DIPTLVAHLKDDHQV 170 (304)
Q Consensus 128 ~~~~~He~~-C~~~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 170 (304)
..+..|+.. -.-+|+.|+. |+... ....|..|++..|..
T Consensus 66 ~~l~~H~~~H~~~~~~~C~~----C~k~f~~~~~L~~H~~~hh~~ 106 (115)
T 2dmi_A 66 RSLLEMEGKEDAQKVLKCMY----CGHSFESLQDLSVHMIKTKHY 106 (115)
T ss_dssp CCCCCCCCSCCCCSSCBCSS----SCCBCSSHHHHHHHHHHTTTT
T ss_pred HHHHHHhhccCCCcceECCC----CCCccCCHHHHHHHHHHhCCc
Confidence 344555532 2346888986 77665 457999999887764
No 92
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=77.69 E-value=0.84 Score=34.14 Aligned_cols=45 Identities=18% Similarity=0.458 Sum_probs=35.0
Q ss_pred CeeeecccccccccccccccccCeecccCcccc-cCCCCCCccCCC
Q 021988 52 ELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV-HNCCPTCRFDLG 96 (304)
Q Consensus 52 ~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~-~~~CP~Cr~~~~ 96 (304)
+=|.|..|...|....+.-.+|..+|..|..+. ..+|..|..+|.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 457899999998755444456899999998765 578999988875
No 93
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=76.78 E-value=0.95 Score=32.61 Aligned_cols=27 Identities=26% Similarity=0.678 Sum_probs=19.7
Q ss_pred ccccCCCCCCCCcccc-ChhhHHHHhhhhCCC
Q 021988 140 RPYNCPYAGSECSVTG-DIPTLVAHLKDDHQV 170 (304)
Q Consensus 140 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 170 (304)
+++.|+. |+... ...+|..|++..|..
T Consensus 63 ~~~~C~~----C~~~f~~~~~l~~H~~~h~~~ 90 (96)
T 2dmd_A 63 RPFKCQI----CPYASRNSSQLTVHLRSHTGD 90 (96)
T ss_dssp CCEECSS----SSCEESSHHHHHHHHTTCCSC
T ss_pred CCccCCC----CCCccCCHHHHHHHHHHhcCC
Confidence 5788886 77765 457899998876653
No 94
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=75.94 E-value=1.2 Score=30.60 Aligned_cols=46 Identities=13% Similarity=0.375 Sum_probs=30.2
Q ss_pred CCeeeeccccccccccc-ccccccC---eecccCcccc-----cCCCCCCccCCC
Q 021988 51 HELLECPVCTNLMYPPI-HQCPNGH---TLCSNCKNRV-----HNCCPTCRFDLG 96 (304)
Q Consensus 51 ~~~l~CpIC~~~l~~Pi-~qC~~GH---~fC~~C~~~~-----~~~CP~Cr~~~~ 96 (304)
.+.-.|.||++-..+|. ..|.+.+ .|=..|+.++ ...||.|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 34457999998765553 5675543 3444577665 367999998764
No 95
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=75.62 E-value=6.6 Score=27.58 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=29.6
Q ss_pred eeecccccccccccccccccCeecccCcccccCCCCCCcc
Q 021988 54 LECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRF 93 (304)
Q Consensus 54 l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~~~~CP~Cr~ 93 (304)
-.|..|..-+.-+-++|.||..||..=...-...|+..-+
T Consensus 16 ~rC~~C~kkvgl~~f~CrCg~~FC~~HRy~e~H~C~fDyk 55 (64)
T 1wfh_A 16 NRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFK 55 (64)
T ss_dssp CCCTTTCCCCCTTCEECSSSCEECTTTCSTTTTTCCCCCS
T ss_pred CcChhhCCccCccCEEeecCCEeccccCCcccCCCCchhh
Confidence 4799999976544489999999999887654456765543
No 96
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=74.00 E-value=4.9 Score=31.40 Aligned_cols=13 Identities=8% Similarity=0.100 Sum_probs=7.3
Q ss_pred eeecccccccccc
Q 021988 54 LECPVCTNLMYPP 66 (304)
Q Consensus 54 l~CpIC~~~l~~P 66 (304)
..|++|...|...
T Consensus 4 ~~C~~C~~~f~~~ 16 (155)
T 2gli_A 4 CRWDGCSQEFDSQ 16 (155)
T ss_dssp CCBTTCCCBCSCH
T ss_pred CCcCCCccccCCH
Confidence 4466666665543
No 97
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=73.86 E-value=2.1 Score=29.58 Aligned_cols=73 Identities=22% Similarity=0.424 Sum_probs=39.2
Q ss_pred CCCCCccCCCCccchH--HHHHhhhccccCCCCCCCCccccCc-cchhccccc-cCcccccCCCCCCCCcccc-ChhhHH
Q 021988 87 CCPTCRFDLGNIRCLA--LEKVAESLELPCKYQSLGCHDIFPY-YGKLKHEQH-CRFRPYNCPYAGSECSVTG-DIPTLV 161 (304)
Q Consensus 87 ~CP~Cr~~~~~~r~~~--le~~l~~l~v~C~~~~~GC~~~~~~-~~~~~He~~-C~~~p~~CP~~g~~C~~~g-~~~~L~ 161 (304)
.|+.|...+.....+. +..-...-.+.|+. |+..+.. ..+..|+.. -.-+++.|+. |+... ....|.
T Consensus 3 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~ 74 (82)
T 2kmk_A 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQY----CGKRFHQKSDMKKHTFIHTGEKPHKCQV----CGKAFSQSSNLI 74 (82)
T ss_dssp ECSSSCCEESSHHHHHHHHHHHHTCCCEECSS----SCCEESSHHHHHHHHHHHHTCCCEECTT----TSCEESSHHHHH
T ss_pred cCCCCcccccCchhHHHHHHHcCCCCCeeCCc----CChhhCCHHHHHHHHHHhcCCCCCcCCC----cchhhCChHHHH
Confidence 3666655554322221 22222334456664 6665533 345556542 2336788886 77765 457888
Q ss_pred HHhhhh
Q 021988 162 AHLKDD 167 (304)
Q Consensus 162 ~Hl~~~ 167 (304)
.|++..
T Consensus 75 ~H~~~H 80 (82)
T 2kmk_A 75 THSRKH 80 (82)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998754
No 98
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=71.74 E-value=2.4 Score=29.39 Aligned_cols=75 Identities=21% Similarity=0.363 Sum_probs=42.8
Q ss_pred CCCccCCCCccchH--HHHHhhhccccCCCCCCCCccccCc-cchhccccccCcccccCCCCCCCCccccC-hhhHHHHh
Q 021988 89 PTCRFDLGNIRCLA--LEKVAESLELPCKYQSLGCHDIFPY-YGKLKHEQHCRFRPYNCPYAGSECSVTGD-IPTLVAHL 164 (304)
Q Consensus 89 P~Cr~~~~~~r~~~--le~~l~~l~v~C~~~~~GC~~~~~~-~~~~~He~~C~~~p~~CP~~g~~C~~~g~-~~~L~~Hl 164 (304)
+.|...+....++. +..-...-++.|+. .||+..+.. ..+..|+..-.- +.|+.++ .|+.... ...|..|+
T Consensus 7 ~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C~~~f~~~~~l~~H~~~h~~--~~C~~~~-~C~~~f~~~~~l~~H~ 81 (85)
T 2j7j_A 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPH--EGCDKRFSLPSRLKRHEKVHAG--YPCKKDD-SCSFVGKTWTLYLKHV 81 (85)
T ss_dssp TTCCCEESSHHHHHHHHHHHHTTCCEECCS--TTCCCEESSHHHHHHHHHHHHS--EECCSCS-SCCCEESSHHHHHHHH
T ss_pred CCCCcccCCHHHHHHHHHHhCCCCCeeCCC--CCCcCccCCHHHHHHHHHHhCC--CCCCCCC-CCCCccCCHHHHHHHH
Confidence 66766665432221 22333445577764 378876644 355667653221 7787531 3777663 47888898
Q ss_pred hhhC
Q 021988 165 KDDH 168 (304)
Q Consensus 165 ~~~H 168 (304)
+..|
T Consensus 82 ~~hh 85 (85)
T 2j7j_A 82 AECH 85 (85)
T ss_dssp HHCC
T ss_pred HhcC
Confidence 7655
No 99
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=68.51 E-value=5.5 Score=29.86 Aligned_cols=43 Identities=21% Similarity=0.559 Sum_probs=29.6
Q ss_pred eeecccccccc-----ccccccc-ccCeecccCccc----ccCCCCCCccCCC
Q 021988 54 LECPVCTNLMY-----PPIHQCP-NGHTLCSNCKNR----VHNCCPTCRFDLG 96 (304)
Q Consensus 54 l~CpIC~~~l~-----~Pi~qC~-~GH~fC~~C~~~----~~~~CP~Cr~~~~ 96 (304)
-.|.||.+-+- .+..-|. |+-.+|+.|.+- ....||.|+.+..
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 46999999743 2323443 266899999862 2478999988764
No 100
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.33 E-value=2.5 Score=28.37 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=25.0
Q ss_pred ccccCcccccCCCCCCCCccccChhhHHHHhhhhCC
Q 021988 134 EQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQ 169 (304)
Q Consensus 134 e~~C~~~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~ 169 (304)
++.|..+|+.|+. |+.......|..|++. +.
T Consensus 3 ~~~C~~~~~~C~~----C~k~f~~~~L~~H~~~-~~ 33 (66)
T 2eod_A 3 SGSSGKRTQPCTY----CTKEFVFDTIQSHQYQ-CP 33 (66)
T ss_dssp SSCCCCCEEECSS----SCCEEEHHHHHHHHHH-CS
T ss_pred cccCCCCCeeccc----cCCccCHHHHHHHHHH-cC
Confidence 4589999999987 7776668899999886 44
No 101
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=67.22 E-value=2.8 Score=29.03 Aligned_cols=37 Identities=22% Similarity=0.596 Sum_probs=28.2
Q ss_pred eeccccccccccc-ccccc-cCeecccCcc---cccCCCCCC
Q 021988 55 ECPVCTNLMYPPI-HQCPN-GHTLCSNCKN---RVHNCCPTC 91 (304)
Q Consensus 55 ~CpIC~~~l~~Pi-~qC~~-GH~fC~~C~~---~~~~~CP~C 91 (304)
.|-.|...+.+.. |+|+. ++.||.+|-. .....||.|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4999999987653 88864 7899999954 334789988
No 102
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=65.96 E-value=0.3 Score=35.14 Aligned_cols=75 Identities=12% Similarity=0.153 Sum_probs=44.8
Q ss_pred CCCCCccCCCCccchH--HHHHhhhccccCCCCCCCCccccCc-cchhccccccCcccccCCCCCCCCcccc-ChhhHHH
Q 021988 87 CCPTCRFDLGNIRCLA--LEKVAESLELPCKYQSLGCHDIFPY-YGKLKHEQHCRFRPYNCPYAGSECSVTG-DIPTLVA 162 (304)
Q Consensus 87 ~CP~Cr~~~~~~r~~~--le~~l~~l~v~C~~~~~GC~~~~~~-~~~~~He~~C~~~p~~CP~~g~~C~~~g-~~~~L~~ 162 (304)
.|+.|...+.....+. +..-...-++.|+. |+..+.. ..+..|...---.++.|+. |+... ....|..
T Consensus 5 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~----C~k~f~~~~~L~~H~~~h~~~~~~c~~----C~~~f~~~~~L~~ 76 (88)
T 1llm_C 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDI----CGRKFARSDERKRHRDIQHILPILEDK----VEELLSKNYHLEN 76 (88)
T ss_dssp ECTTTCCEESCHHHHHHHHHHHHCCCCEECTT----TCCEESSHHHHHHHHHHHTHHHHHHHH----HHHHHHHHHHHHH
T ss_pred cCCCCCCccCCHHHHHHHHHHcCCCCCccCCC----CCCccCCHHHHHHHHHHhCCCcchHHH----HHHHHHHHhhhHH
Confidence 4677766655432221 22233344566764 7766644 3566776654446777875 77655 3468999
Q ss_pred HhhhhCC
Q 021988 163 HLKDDHQ 169 (304)
Q Consensus 163 Hl~~~H~ 169 (304)
|++..|.
T Consensus 77 H~~~~h~ 83 (88)
T 1llm_C 77 EVARLKK 83 (88)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998886
No 103
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=65.95 E-value=2.5 Score=37.26 Aligned_cols=45 Identities=20% Similarity=0.527 Sum_probs=33.1
Q ss_pred Ceeeeccccccccccccccc-ccCeecccCcccc-----cCCCCCCccCCCC
Q 021988 52 ELLECPVCTNLMYPPIHQCP-NGHTLCSNCKNRV-----HNCCPTCRFDLGN 97 (304)
Q Consensus 52 ~~l~CpIC~~~l~~Pi~qC~-~GH~fC~~C~~~~-----~~~CP~Cr~~~~~ 97 (304)
....|.+|.+++..- ..|+ |++.|=..|+.++ ...||.|+.++..
T Consensus 179 ~i~~C~iC~~iv~~g-~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQG-QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSC-EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCC-cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 467799999999854 5776 4666666677654 2589999988653
No 104
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=65.51 E-value=4.6 Score=29.61 Aligned_cols=34 Identities=26% Similarity=0.588 Sum_probs=23.6
Q ss_pred CCeeeecccccccc-cc---ccccc-ccCeecccCcccc
Q 021988 51 HELLECPVCTNLMY-PP---IHQCP-NGHTLCSNCKNRV 84 (304)
Q Consensus 51 ~~~l~CpIC~~~l~-~P---i~qC~-~GH~fC~~C~~~~ 84 (304)
....-||-|...+. ++ .++|+ ||+.||..|...+
T Consensus 23 ~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 23 PKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CCEeECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 33444998888654 22 25786 8999999998765
No 105
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=65.27 E-value=10 Score=26.62 Aligned_cols=41 Identities=17% Similarity=0.299 Sum_probs=30.4
Q ss_pred eeecccccccccccccccccCeecccCcccccCCCCCCccC
Q 021988 54 LECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFD 94 (304)
Q Consensus 54 l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~~~~CP~Cr~~ 94 (304)
-.|..|..-+.-+.++|.||..||..=...-...|+..-+.
T Consensus 16 ~rC~~C~kkvgl~~f~CrCg~~FC~~HR~~e~H~C~fDyk~ 56 (64)
T 1wg2_A 16 NRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKE 56 (64)
T ss_dssp CSCTTTCCCCTTSCEECTTSCEECSSSCSSTTTTCCCCCSC
T ss_pred CcChhhCCcccccCeEeecCCEecccCCCccccCCCcchhH
Confidence 47999999765444899999999998876544567765443
No 106
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=64.94 E-value=3.7 Score=30.33 Aligned_cols=56 Identities=18% Similarity=0.461 Sum_probs=40.7
Q ss_pred HhhhccccCCCCCCCCcccc--CccchhccccccCcccccCCCCCCCCccccC-hhhHHHHhhhhCC
Q 021988 106 VAESLELPCKYQSLGCHDIF--PYYGKLKHEQHCRFRPYNCPYAGSECSVTGD-IPTLVAHLKDDHQ 169 (304)
Q Consensus 106 ~l~~l~v~C~~~~~GC~~~~--~~~~~~~He~~C~~~p~~CP~~g~~C~~~g~-~~~L~~Hl~~~H~ 169 (304)
....-.+.|+. |...+ ....+..|+....-+|+.|+. |+.... ...|..|+...|.
T Consensus 29 ~~~~~~~~C~~----C~k~F~~~~~~L~~H~~~h~~k~~~C~~----Cgk~F~~~~~L~~H~~~~H~ 87 (96)
T 2ctd_A 29 IVDKGSVSCPT----CQAVGRKTIEGLKKHMENCKQEMFTCHH----CGKQLRSLAGMKYHVMANHN 87 (96)
T ss_dssp HHHTSCEECTT----TCSCEESSHHHHHHHHHHHCCCCCCCSS----SCCCCSSHHHHHHHHHHHTC
T ss_pred hcCCCCcCCCC----CCCCcccCHHHHHHHHHHHCCCCeECCC----CCCeeCCHHHHHHHhHHhcC
Confidence 34556778876 88887 455678887765667899986 776653 4789999666775
No 107
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=64.63 E-value=3 Score=44.04 Aligned_cols=63 Identities=13% Similarity=0.074 Sum_probs=50.8
Q ss_pred cCCCCeeeeccccccccccccccccc-CeecccCcccc---cCCCCCCccCCCC---ccchHHHHHhhhcc
Q 021988 48 NGVHELLECPVCTNLMYPPIHQCPNG-HTLCSNCKNRV---HNCCPTCRFDLGN---IRCLALEKVAESLE 111 (304)
Q Consensus 48 ~~l~~~l~CpIC~~~l~~Pi~qC~~G-H~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~l~~l~ 111 (304)
.++++.|.|||=.++|++||.-. .| +++=+..+.++ ...||.=|.++.. .+|.+++..+.++.
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~ 955 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFK 955 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHH
Confidence 57789999999999999998543 36 68888888876 4679988888864 68999988887763
No 108
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=64.48 E-value=1.8 Score=33.70 Aligned_cols=45 Identities=18% Similarity=0.431 Sum_probs=34.8
Q ss_pred CeeeecccccccccccccccccCeecccCcccc-cCCCCCCccCCC
Q 021988 52 ELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV-HNCCPTCRFDLG 96 (304)
Q Consensus 52 ~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~-~~~CP~Cr~~~~ 96 (304)
+-|.|..|...|..--+.-..|..+|..|..+. ..+|..|..+|.
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAID 74 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCC
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCC
Confidence 457899999998764343456899999998764 578999998876
No 109
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=63.49 E-value=3.5 Score=27.31 Aligned_cols=45 Identities=22% Similarity=0.448 Sum_probs=29.5
Q ss_pred CccccCc-cchhccccc---cCcccccCCCCCCCCcccc-ChhhHHHHhhhhCC
Q 021988 121 CHDIFPY-YGKLKHEQH---CRFRPYNCPYAGSECSVTG-DIPTLVAHLKDDHQ 169 (304)
Q Consensus 121 C~~~~~~-~~~~~He~~---C~~~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 169 (304)
|+..+.. ..+..|... -.-+|+.|+. |+... ....|..|++..|.
T Consensus 16 C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~----C~k~f~~~~~L~~H~~~~H~ 65 (66)
T 2drp_A 16 CSRVYTHISNFCRHYVTSHKRNVKVYPCPF----CFKEFTRKDNMTAHVKIIHK 65 (66)
T ss_dssp TCCEESSHHHHHHHHHHHSSSSCCCEECTT----TCCEESCHHHHHHHHHHHTC
T ss_pred CcchhCCHHHHHHHHHHHcCCCCcCeECCC----CCCccCCHHHHHHHHHHHcC
Confidence 5555533 345566543 2457888986 77655 45789999988886
No 110
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=62.91 E-value=13 Score=26.77 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=28.9
Q ss_pred eeecccccccccccccccccCeecccCcccccCCCCCCcc
Q 021988 54 LECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRF 93 (304)
Q Consensus 54 l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~~~~CP~Cr~ 93 (304)
-.|..|..-+.-..+.|.||..||..=+..-...|+..-+
T Consensus 26 nRC~~CrKkvgL~gf~CrCg~~FCs~HRy~e~H~C~fDyk 65 (74)
T 1wfl_A 26 NRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYK 65 (74)
T ss_dssp TBCSSSCCBCGGGCEECTTSCEECSSSCSTTTTTCCCCGG
T ss_pred CcChhhCCcccccCeecCCCCEechhcCCCccCCCcchhh
Confidence 4799999865533389999999999876644456765543
No 111
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=61.81 E-value=3 Score=32.90 Aligned_cols=53 Identities=34% Similarity=0.714 Sum_probs=32.9
Q ss_pred cccCCCCCCCCccccCcc-chhcccccc-CcccccCCCCCCCCcccc-ChhhHHHHhhhhCCCC
Q 021988 111 ELPCKYQSLGCHDIFPYY-GKLKHEQHC-RFRPYNCPYAGSECSVTG-DIPTLVAHLKDDHQVD 171 (304)
Q Consensus 111 ~v~C~~~~~GC~~~~~~~-~~~~He~~C-~~~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~~ 171 (304)
++.|+. |+..+... .+..|+..= .-+|+.|+. |+... ....|..|++..|...
T Consensus 50 ~~~C~~----C~k~F~~~~~L~~H~~~H~~~k~~~C~~----C~k~F~~~~~L~~H~~~hh~~~ 105 (133)
T 2lt7_A 50 KYPCRY----CEKVFPLAEYRTKHEIHHTGERRYQCLA----CGKSFINYQFMSSHIKSVHSQD 105 (133)
T ss_dssp CEECSS----SSCEESSHHHHHHHHHHHHTCCCEEESS----SCCEESSHHHHHHHHHHHTCCC
T ss_pred CeeCCc----cCeecccccchhhhccccCCCccccCCC----CCCCcCCHHHHHHHhHHhcCCC
Confidence 455553 66555433 455565432 235788876 77665 4578999999888643
No 112
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=61.66 E-value=4.1 Score=29.98 Aligned_cols=45 Identities=18% Similarity=0.335 Sum_probs=28.2
Q ss_pred CccccCc-cchhcccccc-CcccccCCCCCCCCcccc-ChhhHHHHhhhhCC
Q 021988 121 CHDIFPY-YGKLKHEQHC-RFRPYNCPYAGSECSVTG-DIPTLVAHLKDDHQ 169 (304)
Q Consensus 121 C~~~~~~-~~~~~He~~C-~~~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 169 (304)
|...+.. ..+..|+..- .-.++.|+. |+... ....|..|++..|+
T Consensus 43 C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~~~ 90 (110)
T 2csh_A 43 CGKKFKMKHHLVGHMKIHTGIKPYECNI----CAKRFMWRDSFHRHVTSCTK 90 (110)
T ss_dssp TSCEESSSHHHHHHHTTTCCCCCEECSS----SCCEESCHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHcCCCCCeeCCC----CcchhcCHHHHHHHHHHccc
Confidence 5544433 2345555421 235788986 77765 45789999988776
No 113
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=60.66 E-value=3.2 Score=29.41 Aligned_cols=34 Identities=12% Similarity=0.068 Sum_probs=24.1
Q ss_pred cccCCCCeeeecccccccccccccccccCeecccCcc
Q 021988 46 SNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKN 82 (304)
Q Consensus 46 ~~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~ 82 (304)
+...+.+.|.||+|...|.--. ..|.++|..|..
T Consensus 3 md~~LLeiL~CP~ck~~L~~~~---~~g~LvC~~c~~ 36 (67)
T 2jny_A 3 LDPQLLEVLACPKDKGPLRYLE---SEQLLVNERLNL 36 (67)
T ss_dssp SCGGGTCCCBCTTTCCBCEEET---TTTEEEETTTTE
T ss_pred CCHHHHHHhCCCCCCCcCeEeC---CCCEEEcCCCCc
Confidence 4567899999999999776321 236677777654
No 114
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=60.44 E-value=2.9 Score=30.85 Aligned_cols=38 Identities=29% Similarity=0.806 Sum_probs=25.5
Q ss_pred eeecccccccccccccccccCeecccCcccc--cCCCCCCccCCC
Q 021988 54 LECPVCTNLMYPPIHQCPNGHTLCSNCKNRV--HNCCPTCRFDLG 96 (304)
Q Consensus 54 l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~--~~~CP~Cr~~~~ 96 (304)
..||.|...|..- .++..|..|-..+ ...||.|..++.
T Consensus 3 ~~CP~C~~~l~~~-----~~~~~C~~C~~~~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERN-----GDTAHCETCAKDFSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEEC-----SSEEECTTTCCEEEEEEECSSSCSCCC
T ss_pred CCCCCCCCccccC-----CCceECccccccCCCcccCcchhhHHH
Confidence 5799999887632 2444577776644 247888888754
No 115
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=59.75 E-value=19 Score=25.90 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=30.8
Q ss_pred eeeecccccccccccccccccCeecccCcccccCCCCCCccC
Q 021988 53 LLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFD 94 (304)
Q Consensus 53 ~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~~~~CP~Cr~~ 94 (304)
.-.|..|..-+.-+-++|.||..||..=...-...|+..-+.
T Consensus 25 ~~RC~~C~kkvgL~~f~CrCg~~FCs~HRy~e~H~C~fDyk~ 66 (74)
T 1wfp_A 25 ATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKG 66 (74)
T ss_dssp CCBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCSCTTS
T ss_pred CccchhhcCcccccceEeccCCEeccccCCCcCCCCcCchhH
Confidence 357999998766545899999999998776544567665443
No 116
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=58.97 E-value=5.4 Score=27.38 Aligned_cols=47 Identities=23% Similarity=0.420 Sum_probs=29.5
Q ss_pred CccccCc-cchhcccc-ccC--cccccCCCCCCCCcccc-ChhhHHHHhhhhCCCC
Q 021988 121 CHDIFPY-YGKLKHEQ-HCR--FRPYNCPYAGSECSVTG-DIPTLVAHLKDDHQVD 171 (304)
Q Consensus 121 C~~~~~~-~~~~~He~-~C~--~~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~~ 171 (304)
|...+.. ..+..|+. .-. -+++.|+. |+... ....|..|++..|...
T Consensus 21 C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~----C~~~f~~~~~L~~H~~~~H~~~ 72 (77)
T 2ct1_A 21 CHARFTQSGTMKMHILQKHTENVAKFHCPH----CDTVIARKSDLGVHLRKQHSYS 72 (77)
T ss_dssp TCCEESCHHHHHHHHHHHSSSSCSSEECSS----SSCEESSHHHHHHHHHHTSCCS
T ss_pred cCchhCCHHHHHHHHHHhcCCCCCccCCCC----CCCccCCHHHHHHHHHHhCCCC
Confidence 5544433 24455543 222 25788986 77766 4578999999988753
No 117
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=58.91 E-value=18 Score=26.77 Aligned_cols=39 Identities=15% Similarity=0.351 Sum_probs=29.3
Q ss_pred eeeccccccccc--ccccccccCeecccCcccccCCCCCCcc
Q 021988 54 LECPVCTNLMYP--PIHQCPNGHTLCSNCKNRVHNCCPTCRF 93 (304)
Q Consensus 54 l~CpIC~~~l~~--Pi~qC~~GH~fC~~C~~~~~~~CP~Cr~ 93 (304)
-.|..|..-+.- | ++|.||..||+.=...-...|+..-.
T Consensus 26 ~rC~~C~kkvgl~~~-f~CrCg~~FC~~HRy~e~H~C~fDyK 66 (85)
T 1wff_A 26 KHCFLCGKKTGLATS-FECRCGNNFCASHRYAEAHGCNYDYK 66 (85)
T ss_dssp CBCSSSCCBCSSSSC-EECTTCCEECTTTCSTGGGTCCSCCS
T ss_pred ccchhhCCeecccCC-eEcCCCCEecccCCCccCCCCcchhh
Confidence 479999986554 5 89999999999887654456876433
No 118
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=57.93 E-value=4.3 Score=28.83 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=22.9
Q ss_pred ccCCCCeeeecccccccccccccccccCeecccCcc
Q 021988 47 NNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKN 82 (304)
Q Consensus 47 ~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~ 82 (304)
...+.+.|.||+|...|.--. .. |-++|..|..
T Consensus 2 d~~LL~iL~CP~ck~~L~~~~-~~--~~LiC~~cg~ 34 (68)
T 2jr6_A 2 EKKFLDILVCPVTKGRLEYHQ-DK--QELWSRQAKL 34 (68)
T ss_dssp CCSSSCCCBCSSSCCBCEEET-TT--TEEEETTTTE
T ss_pred ChHHhhheECCCCCCcCeEeC-CC--CEEEcCCCCc
Confidence 356889999999998776321 22 6677777654
No 119
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=57.53 E-value=9.9 Score=24.39 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=28.4
Q ss_pred CccccCc-cchhccccc-cCcccccCCCCCCCCcccc-ChhhHHHHhhhhCCCC
Q 021988 121 CHDIFPY-YGKLKHEQH-CRFRPYNCPYAGSECSVTG-DIPTLVAHLKDDHQVD 171 (304)
Q Consensus 121 C~~~~~~-~~~~~He~~-C~~~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~~ 171 (304)
|+..+.. ..+..|+.. -.-.|+.|+. |+... ....|..|+...|...
T Consensus 8 C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~H~~~ 57 (60)
T 2adr_A 8 CTRAFARQEHLKRHYRSHTNEKPYPCGL----CNRAFTRRDLLIRHAQKIHSGN 57 (60)
T ss_dssp TCCCBSCHHHHHHHHHTTTSSCSEECTT----TCCEESSHHHHHHHHTTTSCCS
T ss_pred CccccCCHHHHHHHHHHhCCCCCccCCC----CCCccCCHHHHHHHHHHHcCCc
Confidence 4444432 234455432 1235788986 77665 4578999998888744
No 120
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=57.51 E-value=2.9 Score=33.62 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=22.4
Q ss_pred cccccCCCCCCCCccccChhhHHH-HhhhhC
Q 021988 139 FRPYNCPYAGSECSVTGDIPTLVA-HLKDDH 168 (304)
Q Consensus 139 ~~p~~CP~~g~~C~~~g~~~~L~~-Hl~~~H 168 (304)
-.++.||+. +|+|++...++.. |+...+
T Consensus 102 ~L~v~Cpn~--GC~~~~~l~~l~~~H~~~~~ 130 (141)
T 3knv_A 102 SLPAVCPSD--GCTWKGTLKEYESCHEGRCP 130 (141)
T ss_dssp TSEEECCST--TCCCEEEHHHHHHHTTTCCH
T ss_pred ccccccCCC--CCCCEeEHHHHHHHHHHHhH
Confidence 356789984 5999999999998 886543
No 121
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=57.35 E-value=4.3 Score=28.52 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=32.0
Q ss_pred CeeeecccccccccccccccccCeecc-cCcccc-cCCCCCCccCC
Q 021988 52 ELLECPVCTNLMYPPIHQCPNGHTLCS-NCKNRV-HNCCPTCRFDL 95 (304)
Q Consensus 52 ~~l~CpIC~~~l~~Pi~qC~~GH~fC~-~C~~~~-~~~CP~Cr~~~ 95 (304)
+-|.|..|...|..-.+.-..|..+|. .|..+. ..+|..|...+
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCce
Confidence 457899999998864333356899999 698764 57888887653
No 122
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=57.22 E-value=7.8 Score=28.04 Aligned_cols=39 Identities=28% Similarity=0.686 Sum_probs=27.6
Q ss_pred eeeecc--ccccccc----ccccc------cccCeecccCcccccCCCCCCcc
Q 021988 53 LLECPV--CTNLMYP----PIHQC------PNGHTLCSNCKNRVHNCCPTCRF 93 (304)
Q Consensus 53 ~l~CpI--C~~~l~~----Pi~qC------~~GH~fC~~C~~~~~~~CP~Cr~ 93 (304)
..-||. |...+.. +..+| .||+.||..|...+.. -.|..
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~--~~C~~ 75 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE--GECSA 75 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS--SCSSS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC--Ccccc
Confidence 555887 8877642 23688 5899999999988743 45644
No 123
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=55.61 E-value=4.8 Score=25.64 Aligned_cols=27 Identities=30% Similarity=0.763 Sum_probs=19.2
Q ss_pred cccccCCCCCCCCcccc-ChhhHHHHhhhhCC
Q 021988 139 FRPYNCPYAGSECSVTG-DIPTLVAHLKDDHQ 169 (304)
Q Consensus 139 ~~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 169 (304)
-+|+.|+. |+... ....|..|++..|+
T Consensus 30 ~~~~~C~~----C~~~f~~~~~l~~H~~~hh~ 57 (57)
T 3uk3_C 30 EKPYKCEF----CEYAAAQKTSLRYHLERHHK 57 (57)
T ss_dssp CCCEECSS----SSCEESSHHHHHHHHHHHC-
T ss_pred CCCcCCCC----CcchhCCHHHHHHHHHHhcC
Confidence 35788876 77665 45789999988774
No 124
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=55.04 E-value=7.8 Score=27.05 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=31.2
Q ss_pred hccccCCCCCCCCccccCcc-chhccccc-cCcccccCCCCCCCCcccc-ChhhHHHHhhhhC
Q 021988 109 SLELPCKYQSLGCHDIFPYY-GKLKHEQH-CRFRPYNCPYAGSECSVTG-DIPTLVAHLKDDH 168 (304)
Q Consensus 109 ~l~v~C~~~~~GC~~~~~~~-~~~~He~~-C~~~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H 168 (304)
.-.+.|+. |+..+... .+..|+.. -.-+++.|+. |+... ....|..|++..+
T Consensus 32 ~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~H~ 86 (90)
T 1a1h_A 32 QKPFQCRI----CMRNFSRSDHLTTHIRTHTGEKPFACDI----CGRKFARSDERKRHTKIHL 86 (90)
T ss_dssp CCCEECTT----TCCEESCHHHHHHHHHHHHCCCCEECTT----TCCEESSHHHHHHHHGGGG
T ss_pred CCCccCCC----CCcccCCHHHHHHHHHHcCCCCCccCCC----CCchhCCHHHHHHHHHHhc
Confidence 34456654 66655433 45566542 2346788886 77665 4478999987544
No 125
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.18 E-value=9.9 Score=27.68 Aligned_cols=35 Identities=20% Similarity=0.523 Sum_probs=24.7
Q ss_pred CCCCeeeeccccccccccc--cccc-ccCeecccCccc
Q 021988 49 GVHELLECPVCTNLMYPPI--HQCP-NGHTLCSNCKNR 83 (304)
Q Consensus 49 ~l~~~l~CpIC~~~l~~Pi--~qC~-~GH~fC~~C~~~ 83 (304)
+..+.-.|.+|...|..-. ..|. ||.+||..|...
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 4445557999999886432 3453 399999999764
No 126
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.33 E-value=7.8 Score=27.15 Aligned_cols=39 Identities=15% Similarity=0.367 Sum_probs=27.0
Q ss_pred CeeeecccccccccccccccccCeecccCcccc-cCCCCC
Q 021988 52 ELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV-HNCCPT 90 (304)
Q Consensus 52 ~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~-~~~CP~ 90 (304)
+=|.|..|...|....+.-..|.++|..|..+. ...|..
T Consensus 34 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~ 73 (76)
T 1x68_A 34 ECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGP 73 (76)
T ss_dssp GGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSS
T ss_pred ccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCC
Confidence 447899999888754343456889999998764 344543
No 127
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=53.20 E-value=9.6 Score=29.62 Aligned_cols=79 Identities=25% Similarity=0.498 Sum_probs=42.1
Q ss_pred CCCCC--CccCCCCccchH--HHHHhhhccccCCCCCCCCccccC-ccchhccc-c-ccCcccccCCCCCCCCccccC-h
Q 021988 86 NCCPT--CRFDLGNIRCLA--LEKVAESLELPCKYQSLGCHDIFP-YYGKLKHE-Q-HCRFRPYNCPYAGSECSVTGD-I 157 (304)
Q Consensus 86 ~~CP~--Cr~~~~~~r~~~--le~~l~~l~v~C~~~~~GC~~~~~-~~~~~~He-~-~C~~~p~~CP~~g~~C~~~g~-~ 157 (304)
..|+. |...+....++. +..-...-++.|+. .||+..+. ...+..|. . --.-+++.|+.+ +|+.... .
T Consensus 68 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~--~C~~~f~~~ 143 (155)
T 2gli_A 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEH--EGCSKAFSNASDRAKHQNRTHSNEKPYVCKLP--GCTKRYTDP 143 (155)
T ss_dssp CCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCS--TTCCCEESSSSTTHHHHHHTTCSCCCEECCST--TTCCEESSH
T ss_pred ccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCC--CCCCCccCCHHHHHHHHHHhcCCCCCeeCCCC--CCccccCCH
Confidence 46764 776665433221 22222344566664 25776653 34556665 2 233456777653 2666553 3
Q ss_pred hhHHHHhhhhC
Q 021988 158 PTLVAHLKDDH 168 (304)
Q Consensus 158 ~~L~~Hl~~~H 168 (304)
..|..|++..|
T Consensus 144 ~~L~~H~~~hh 154 (155)
T 2gli_A 144 SSLRKHVKTVH 154 (155)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHhhc
Confidence 67777777655
No 128
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.28 E-value=3.2 Score=28.78 Aligned_cols=38 Identities=13% Similarity=0.350 Sum_probs=21.5
Q ss_pred eeeecccccccccccccccccCeecccCcccccCCCCC
Q 021988 53 LLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPT 90 (304)
Q Consensus 53 ~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~~~~CP~ 90 (304)
=|.|..|...|..-.+.-..|..+|..|..+....|+.
T Consensus 33 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~~~~ 70 (72)
T 1x61_A 33 CFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLESGPS 70 (72)
T ss_dssp TCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHTCSS
T ss_pred CCcccccCCcCCcCcCEeeCCeEECHHHHHHHHccCCC
Confidence 35677777776543233334677777776654344443
No 129
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=50.53 E-value=7.6 Score=31.60 Aligned_cols=75 Identities=20% Similarity=0.391 Sum_probs=41.6
Q ss_pred CCCCCccCCCCccchH--HHHHhhhccccCCCCCCCCccccCcc-chhccccc-cCcccccCCCCCCCCcccc-ChhhHH
Q 021988 87 CCPTCRFDLGNIRCLA--LEKVAESLELPCKYQSLGCHDIFPYY-GKLKHEQH-CRFRPYNCPYAGSECSVTG-DIPTLV 161 (304)
Q Consensus 87 ~CP~Cr~~~~~~r~~~--le~~l~~l~v~C~~~~~GC~~~~~~~-~~~~He~~-C~~~p~~CP~~g~~C~~~g-~~~~L~ 161 (304)
.|+.|...+....++. +......-.+.|+. |+..+... .+..|+.. -.-+++.|+. |+... ....|.
T Consensus 79 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~L~ 150 (190)
T 2i13_A 79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPE----CGKSFSQLAHLRAHQRTHTGEKPYKCPE----CGKSFSREDNLH 150 (190)
T ss_dssp ECTTTCCEESCHHHHHHHHHHHHTCCCEECTT----TCCEESSHHHHHHHHHHHHCCCCEECTT----TCCEESCHHHHH
T ss_pred cCcccCCccCCHHHHHHHHHhcCCCCCCcCCC----CCCccCCHHHHHHHHHHhCCCCCeECCC----CCcccCCHHHHH
Confidence 5888877665433221 22223344566764 77666443 45666543 2345677775 66655 345777
Q ss_pred HHhhhhCC
Q 021988 162 AHLKDDHQ 169 (304)
Q Consensus 162 ~Hl~~~H~ 169 (304)
.|++..+.
T Consensus 151 ~H~~~H~~ 158 (190)
T 2i13_A 151 THQRTHTG 158 (190)
T ss_dssp HHHHHHHC
T ss_pred HHHHhcCC
Confidence 77776544
No 130
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=49.41 E-value=11 Score=27.07 Aligned_cols=29 Identities=31% Similarity=0.599 Sum_probs=22.7
Q ss_pred ccccCCCCCCCCccccCh-hhHHHHhhhhCCC
Q 021988 140 RPYNCPYAGSECSVTGDI-PTLVAHLKDDHQV 170 (304)
Q Consensus 140 ~p~~CP~~g~~C~~~g~~-~~L~~Hl~~~H~~ 170 (304)
+|+.|+.+ +|+....+ ..|..|++..|..
T Consensus 26 KPYkC~~~--~CgKaFsr~s~L~~H~rriHTg 55 (73)
T 1x3c_A 26 RPYRCVHQ--GCFAAFTIQQNLILHYQAVHKS 55 (73)
T ss_dssp CSCBCCST--TCCCBCSSHHHHHHHHHHHSSS
T ss_pred CCeECCCC--CcChhHcCHHHHHHHhhhhCCC
Confidence 79999875 49887754 7899998777863
No 131
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.40 E-value=6.5 Score=26.96 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=29.7
Q ss_pred CccccCcc-chhcccccc----CcccccCCCCCCCCcccc-ChhhHHHHhhhhCCCC
Q 021988 121 CHDIFPYY-GKLKHEQHC----RFRPYNCPYAGSECSVTG-DIPTLVAHLKDDHQVD 171 (304)
Q Consensus 121 C~~~~~~~-~~~~He~~C----~~~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~~ 171 (304)
|...+... .+..|+..- .-+++.|+. |+... ....|..|++..|...
T Consensus 13 C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~----C~k~f~~~~~L~~H~~~~H~~~ 65 (78)
T 2d9h_A 13 CGFTCRQKASLNWHQRKHAETVAALRFPCEF----CGKRFEKPDSVAAHRSKSHPAL 65 (78)
T ss_dssp SCCEESSHHHHHHHHHHHHHHTTTCCEECTT----TCCEESSHHHHHHHHHHTSTTT
T ss_pred CCCeeCCHHHHHHHHHHhhccCCCcccCCCC----CCchhCCHHHHHHHHHHhCCCC
Confidence 55444332 344554432 246788986 77766 4578999999999754
No 132
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=48.99 E-value=6.6 Score=26.69 Aligned_cols=31 Identities=26% Similarity=0.711 Sum_probs=22.2
Q ss_pred cccCCCCeeeecccccccccccccccccCeecc--cCc
Q 021988 46 SNNGVHELLECPVCTNLMYPPIHQCPNGHTLCS--NCK 81 (304)
Q Consensus 46 ~~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~--~C~ 81 (304)
+...+.+.|.||+|...|..-. |..+|. .|.
T Consensus 3 ~d~~lL~iL~CP~c~~~L~~~~-----~~L~C~~~~c~ 35 (56)
T 2kpi_A 3 LEAGLLEILACPACHAPLEERD-----AELICTGQDCG 35 (56)
T ss_dssp CCCSCTTSCCCSSSCSCEEEET-----TEEEECSSSCC
T ss_pred CCHHHHhheeCCCCCCcceecC-----CEEEcCCcCCC
Confidence 4567889999999999766321 666666 564
No 133
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=48.06 E-value=6.8 Score=27.92 Aligned_cols=32 Identities=19% Similarity=0.463 Sum_probs=21.9
Q ss_pred cCCCCeeeecccccccccccccccccCeecccCcc
Q 021988 48 NGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKN 82 (304)
Q Consensus 48 ~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~ 82 (304)
..+.+.|.||+|...|.--. ..|-++|..|..
T Consensus 3 ~~LL~iL~CP~ck~~L~~~~---~~~~LiC~~cg~ 34 (70)
T 2js4_A 3 SRLLDILVCPVCKGRLEFQR---AQAELVCNADRL 34 (70)
T ss_dssp CCCCCCCBCTTTCCBEEEET---TTTEEEETTTTE
T ss_pred hHHhhheECCCCCCcCEEeC---CCCEEEcCCCCc
Confidence 46788999999999776321 235666666643
No 134
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=47.61 E-value=5.7 Score=32.98 Aligned_cols=14 Identities=14% Similarity=0.434 Sum_probs=9.5
Q ss_pred eeeecccccccccc
Q 021988 53 LLECPVCTNLMYPP 66 (304)
Q Consensus 53 ~l~CpIC~~~l~~P 66 (304)
.-.|..|.+++.+.
T Consensus 60 ~~~C~~C~~~I~~~ 73 (182)
T 2jtn_A 60 IPMCAGCDQHILDR 73 (182)
T ss_dssp CCBCBTSSSBCCCS
T ss_pred CCcCccCCCCccCc
Confidence 45678887777654
No 135
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=47.55 E-value=13 Score=26.34 Aligned_cols=44 Identities=23% Similarity=0.434 Sum_probs=24.6
Q ss_pred CCccccCc-cchhccccc-cCcccccCCCCCCCCcccc-ChhhHHHHhhhh
Q 021988 120 GCHDIFPY-YGKLKHEQH-CRFRPYNCPYAGSECSVTG-DIPTLVAHLKDD 167 (304)
Q Consensus 120 GC~~~~~~-~~~~~He~~-C~~~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~ 167 (304)
+|...+.. ..+..|+.. -.-+++.|+. |+... ....|..|++..
T Consensus 52 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~H 98 (100)
T 2ebt_A 52 GCDWRFARSDELTRHYRKHTGAKPFQCGV----CNRSFSRSDHLALHMKRH 98 (100)
T ss_dssp SCCCEESSHHHHHHHHHHHTSCCSCBCSS----SCCBCSSHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHhCCCCCeECCC----CcCccCCHHHHHHHHHHh
Confidence 35544433 234455432 2235788876 66655 447888887653
No 136
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=46.83 E-value=14 Score=25.11 Aligned_cols=36 Identities=17% Similarity=0.407 Sum_probs=24.0
Q ss_pred cccCCCCeeeecccccccccccccccccCeecccCccc
Q 021988 46 SNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNR 83 (304)
Q Consensus 46 ~~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~ 83 (304)
..+.+...+.||.|...- -++.-..|-++|..|-.-
T Consensus 4 ~~~~ll~~~~Cp~C~~~~--lv~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 4 SRLDALPRVTCPNHPDAI--LVEDYRAGDMICPECGLV 39 (58)
T ss_dssp CSCCCCSCCSBTTBSSSC--CEECSSSCCEECTTTCCE
T ss_pred chhhccccccCcCCCCCc--eeEeCCCCeEEeCCCCCE
Confidence 445678888899997621 123334588999998543
No 137
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.74 E-value=6 Score=28.85 Aligned_cols=56 Identities=23% Similarity=0.364 Sum_probs=36.9
Q ss_pred hhccccCCCCCCCCccccC--ccchhccccccC--cccccCCCCCCCCcccc-ChhhHHHHhhhhCCCC
Q 021988 108 ESLELPCKYQSLGCHDIFP--YYGKLKHEQHCR--FRPYNCPYAGSECSVTG-DIPTLVAHLKDDHQVD 171 (304)
Q Consensus 108 ~~l~v~C~~~~~GC~~~~~--~~~~~~He~~C~--~~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~~ 171 (304)
..-.+.|+. |...+. ...|..|+.... -+++.|+. |+... ....|..|++..|...
T Consensus 21 ~~~~~~C~~----C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~----C~k~F~~~~~L~~H~~~h~~~k 81 (98)
T 2gqj_A 21 ERGEAVCPT----CNVVTRKTLVGLKKHMEVCQKLQDALKCQH----CRKQFKSKAGLNYHTMAEHSAK 81 (98)
T ss_dssp TTSCCCCTT----TCCCCSSCSHHHHHHHHHHHHHHHHHSCSS----SCCCCSCHHHHHHHHHHHSCSC
T ss_pred cCCCcCCCC----CCCChhhhHHHHHHHHHHHcCCCCCEECCC----CCCccCCHHHHHHHHHHHcCCC
Confidence 344566764 776664 345666765433 36788986 77665 4578999999888643
No 138
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=46.36 E-value=19 Score=26.08 Aligned_cols=34 Identities=24% Similarity=0.671 Sum_probs=24.4
Q ss_pred CCCeeeeccccccccccc--cccc-ccCeecccCccc
Q 021988 50 VHELLECPVCTNLMYPPI--HQCP-NGHTLCSNCKNR 83 (304)
Q Consensus 50 l~~~l~CpIC~~~l~~Pi--~qC~-~GH~fC~~C~~~ 83 (304)
..+.-.|.+|...|..-. ..|. ||++||..|...
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 344557999999887432 4453 399999999865
No 139
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=45.93 E-value=5.2 Score=31.02 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=31.9
Q ss_pred eeeeccccccccc--ccccccccCeecccCcccc-cC--CCCCCccCCCC
Q 021988 53 LLECPVCTNLMYP--PIHQCPNGHTLCSNCKNRV-HN--CCPTCRFDLGN 97 (304)
Q Consensus 53 ~l~CpIC~~~l~~--Pi~qC~~GH~fC~~C~~~~-~~--~CP~Cr~~~~~ 97 (304)
-|.|..|...|.+ ..+.=..|..+|..|..+. .. .|..|..+|..
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 4678889888863 2233345888999998764 34 79999888764
No 140
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=45.19 E-value=13 Score=32.13 Aligned_cols=29 Identities=28% Similarity=0.752 Sum_probs=21.8
Q ss_pred eeccccccccccc--cccc-ccCeecccCccc
Q 021988 55 ECPVCTNLMYPPI--HQCP-NGHTLCSNCKNR 83 (304)
Q Consensus 55 ~CpIC~~~l~~Pi--~qC~-~GH~fC~~C~~~ 83 (304)
.|.+|...|..-. ..|. ||++||..|...
T Consensus 166 ~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 166 ECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 6999998887332 4554 499999999864
No 141
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=44.78 E-value=7.4 Score=31.89 Aligned_cols=44 Identities=14% Similarity=0.358 Sum_probs=32.8
Q ss_pred CeeeecccccccccccccccccCeecccCcccc-cCCCCCCccCCC
Q 021988 52 ELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV-HNCCPTCRFDLG 96 (304)
Q Consensus 52 ~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~-~~~CP~Cr~~~~ 96 (304)
+-|.|..|...|..-.+ -..|..+|..|..+. ...|..|..+|.
T Consensus 32 ~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~~I~ 76 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIP 76 (169)
T ss_dssp TTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCCBCC
T ss_pred ccCccCCCCCcCCCCCc-ccCCeeeecccccccccccccccccccC
Confidence 45788889888875434 356889999988754 578888888764
No 142
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=44.73 E-value=6.3 Score=27.93 Aligned_cols=32 Identities=19% Similarity=0.446 Sum_probs=21.5
Q ss_pred cCCCCeeeecccccccccccccccccCeecccCcc
Q 021988 48 NGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKN 82 (304)
Q Consensus 48 ~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~ 82 (304)
..+.+.|.||+|...|.--. ..|-++|..|..
T Consensus 3 ~~LL~iL~CP~ck~~L~~~~---~~~~LiC~~cg~ 34 (68)
T 2hf1_A 3 AKFLEILVCPLCKGPLVFDK---SKDELICKGDRL 34 (68)
T ss_dssp CCCEEECBCTTTCCBCEEET---TTTEEEETTTTE
T ss_pred hHHhhheECCCCCCcCeEeC---CCCEEEcCCCCc
Confidence 46778899999998776321 235666666643
No 143
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=44.26 E-value=13 Score=26.85 Aligned_cols=33 Identities=27% Similarity=0.719 Sum_probs=23.6
Q ss_pred CCeeeeccccccccccc--cccc-ccCeecccCccc
Q 021988 51 HELLECPVCTNLMYPPI--HQCP-NGHTLCSNCKNR 83 (304)
Q Consensus 51 ~~~l~CpIC~~~l~~Pi--~qC~-~GH~fC~~C~~~ 83 (304)
.+.-.|.+|...|..-. ..|. ||.+||..|...
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 34446999999887432 3453 399999999874
No 144
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=43.24 E-value=4.9 Score=31.28 Aligned_cols=46 Identities=20% Similarity=0.390 Sum_probs=33.2
Q ss_pred CCeeeeccccccccc--ccccccccCeecccCcccc-cC--CCCCCccCCC
Q 021988 51 HELLECPVCTNLMYP--PIHQCPNGHTLCSNCKNRV-HN--CCPTCRFDLG 96 (304)
Q Consensus 51 ~~~l~CpIC~~~l~~--Pi~qC~~GH~fC~~C~~~~-~~--~CP~Cr~~~~ 96 (304)
.+-|.|..|...|.. ..+.-..|..+|..|..+. .. .|..|..+|.
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 355789999998863 2244456899999998765 33 7999988764
No 145
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=43.14 E-value=25 Score=27.21 Aligned_cols=78 Identities=15% Similarity=0.232 Sum_probs=45.1
Q ss_pred CCCCCCccCCCCccchHHHHHh---hhcc--------ccCCCCCCCCccccCcc-chhcccccc-CcccccCCCCCCCCc
Q 021988 86 NCCPTCRFDLGNIRCLALEKVA---ESLE--------LPCKYQSLGCHDIFPYY-GKLKHEQHC-RFRPYNCPYAGSECS 152 (304)
Q Consensus 86 ~~CP~Cr~~~~~~r~~~le~~l---~~l~--------v~C~~~~~GC~~~~~~~-~~~~He~~C-~~~p~~CP~~g~~C~ 152 (304)
..|+.|...+....++..-... .... +.|+. |...+... .+..|+..= .-+++.|+.+ .|+
T Consensus 26 ~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~C~ 99 (155)
T 2rpc_A 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPR----EGKSFKAKYKLVNHIRVHTGEKPFPCPFP--GCG 99 (155)
T ss_dssp SSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTT----SSCCCSSHHHHHHHTHHHHCCCSEECSCT--TTC
T ss_pred cccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCC----cccccCCHHHHHHHHHhcCCCCcccCCcC--CCC
Confidence 4678887776654333221111 1111 35654 77766543 567776532 2367889864 387
Q ss_pred ccc-ChhhHHHHhhhhCC
Q 021988 153 VTG-DIPTLVAHLKDDHQ 169 (304)
Q Consensus 153 ~~g-~~~~L~~Hl~~~H~ 169 (304)
... ....|..|++..+.
T Consensus 100 ~~f~~~~~L~~H~~~h~~ 117 (155)
T 2rpc_A 100 KIFARSENLKIHKRTHTG 117 (155)
T ss_dssp CEESCHHHHHHHHTTTCS
T ss_pred CccCCHHHHHHHHHhhCC
Confidence 766 45789999886554
No 146
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=43.08 E-value=26 Score=28.19 Aligned_cols=111 Identities=18% Similarity=0.250 Sum_probs=61.2
Q ss_pred CCCeeee--ccccccccccc-ccccccCeecccCcccccCCC--CCCccCCCCccchH--HHHHhhhccccCCCCCCCCc
Q 021988 50 VHELLEC--PVCTNLMYPPI-HQCPNGHTLCSNCKNRVHNCC--PTCRFDLGNIRCLA--LEKVAESLELPCKYQSLGCH 122 (304)
Q Consensus 50 l~~~l~C--pIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~~~C--P~Cr~~~~~~r~~~--le~~l~~l~v~C~~~~~GC~ 122 (304)
....+.| +.|...+.... +. -|.- .=.......| +.|...+....++. +..-...-.+.|+. .+|+
T Consensus 9 ~~~~~~C~~~~C~~~f~~~~~L~---~H~~--~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C~ 81 (190)
T 1tf6_A 9 VYKRYICSFADCGAAYNKNWKLQ---AHLC--KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS--DGCD 81 (190)
T ss_dssp -CCCCBCSSTTTCCBCSSHHHHH---HHHH--HHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCS--SSCC
T ss_pred CCcceeCCCCCCcchhCCHHHHH---HHHH--hcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCC--CCCC
Confidence 3455788 68988887653 21 1210 0000112578 88988776543322 22222234566763 1588
Q ss_pred cccCcc-chhccc-ccc--CcccccCCCCCCCCcccc-ChhhHHHHhhhhCC
Q 021988 123 DIFPYY-GKLKHE-QHC--RFRPYNCPYAGSECSVTG-DIPTLVAHLKDDHQ 169 (304)
Q Consensus 123 ~~~~~~-~~~~He-~~C--~~~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 169 (304)
..+... .+..|. ..- .-.++.|+.. .|+... ....|..|++..+.
T Consensus 82 ~~f~~~~~l~~H~~~~h~~~~~~~~C~~~--~C~k~f~~~~~L~~H~~~H~~ 131 (190)
T 1tf6_A 82 LRFTTKANMKKHFNRFHNIKICVYVCHFE--NCGKAFKKHNQLKVHQFSHTQ 131 (190)
T ss_dssp CEESCHHHHHHHHHTTSSTTTSCCEECSS--SSCEECSSHHHHHHHHGGGSS
T ss_pred CccCCHHHHHHHHHHhcCCCcceeeCCCC--CCccccCCHHHHHHHHHHhCC
Confidence 776544 567787 322 3457788442 387766 45789999886554
No 147
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=42.80 E-value=9.9 Score=30.87 Aligned_cols=14 Identities=21% Similarity=0.553 Sum_probs=1.9
Q ss_pred eeeecccccccccc
Q 021988 53 LLECPVCTNLMYPP 66 (304)
Q Consensus 53 ~l~CpIC~~~l~~P 66 (304)
.+.|++|...+...
T Consensus 21 ~~~C~~C~~~f~~~ 34 (190)
T 2i13_A 21 PYACPECGKSFSRS 34 (190)
T ss_dssp ----------CCSS
T ss_pred CCcCCCCccccCCH
Confidence 35566666555543
No 148
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=42.37 E-value=13 Score=24.79 Aligned_cols=46 Identities=28% Similarity=0.439 Sum_probs=29.0
Q ss_pred CccccCc-cchhcccccc-CcccccCCCCCCCCcccc-ChhhHHHHhhhhCCC
Q 021988 121 CHDIFPY-YGKLKHEQHC-RFRPYNCPYAGSECSVTG-DIPTLVAHLKDDHQV 170 (304)
Q Consensus 121 C~~~~~~-~~~~~He~~C-~~~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 170 (304)
|...+.. ..+..|+..- .-+++.|+. |+... ....|..|++..|..
T Consensus 15 C~k~f~~~~~L~~H~~~H~~~~~~~C~~----C~~~f~~~~~L~~H~~~h~~~ 63 (70)
T 1x5w_A 15 CSYSCSSKAALRIHERIHCTDRPFKCNY----CSFDTKQPSNLSKHMKKFHGD 63 (70)
T ss_dssp SSCEESSHHHHHHHHGGGCCSCSEECSS----SSCEESSHHHHHHHHHHHHSS
T ss_pred CCcccCCHHHHHHHHHHcCCCCCEeCCC----CCCccCCHHHHHHHHHHHhCC
Confidence 5554433 2455565432 346788986 77766 457899999887764
No 149
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=42.29 E-value=10 Score=29.85 Aligned_cols=32 Identities=22% Similarity=0.716 Sum_probs=23.5
Q ss_pred eeeeccccccccccc--cccc-ccCeecccCcccc
Q 021988 53 LLECPVCTNLMYPPI--HQCP-NGHTLCSNCKNRV 84 (304)
Q Consensus 53 ~l~CpIC~~~l~~Pi--~qC~-~GH~fC~~C~~~~ 84 (304)
.-.|.+|...|..-. ..|. ||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 347999999887432 4553 4999999998653
No 150
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=41.65 E-value=20 Score=22.46 Aligned_cols=36 Identities=31% Similarity=0.612 Sum_probs=22.4
Q ss_pred hhccccc-cCcccccCCCCCCCCcccc-ChhhHHHHhhhhCC
Q 021988 130 KLKHEQH-CRFRPYNCPYAGSECSVTG-DIPTLVAHLKDDHQ 169 (304)
Q Consensus 130 ~~~He~~-C~~~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 169 (304)
+..|+.. -.-+++.|+. |+... ....|..|++..|.
T Consensus 17 l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~ 54 (57)
T 1bbo_A 17 LKKHIRTHTDVRPYHCTY----CNFSFKTKGNLTKHMKSKAH 54 (57)
T ss_dssp HHHHHHHTSSCCCEECSS----SSCEESSHHHHHHHHHSSSS
T ss_pred HHHHHHhcCCCCCccCCC----CCchhcCHHHHHHHHHHhcc
Confidence 4445432 2235788886 77665 44789999876554
No 151
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=41.00 E-value=7 Score=27.78 Aligned_cols=32 Identities=13% Similarity=0.382 Sum_probs=21.3
Q ss_pred cCCCCeeeecccccccccccccccccCeecccCcc
Q 021988 48 NGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKN 82 (304)
Q Consensus 48 ~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~ 82 (304)
..+.+.|.||+|...|.--. ..|-.+|..|..
T Consensus 3 ~~LLeiL~CP~ck~~L~~~~---~~~~LiC~~cg~ 34 (69)
T 2pk7_A 3 TKLLDILACPICKGPLKLSA---DKTELISKGAGL 34 (69)
T ss_dssp CCGGGTCCCTTTCCCCEECT---TSSEEEETTTTE
T ss_pred hHHHhheeCCCCCCcCeEeC---CCCEEEcCCCCc
Confidence 45778899999998776321 235566666643
No 152
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=40.17 E-value=10 Score=28.75 Aligned_cols=48 Identities=29% Similarity=0.515 Sum_probs=36.6
Q ss_pred cCCCCeeeecccccccccccccccccCeecccCcccc---cCCCCCCccCCCC
Q 021988 48 NGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN 97 (304)
Q Consensus 48 ~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~ 97 (304)
..+..-+.|-.|-...+.= +.| +.|-.|..|+..+ +..||.|..++..
T Consensus 23 ~s~~G~~nCKsCWf~~k~L-V~C-~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 23 ATHLGPQFCKSCWFENKGL-VEC-NNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp CCCSCCCCCCSSCSCCSSE-EEC-SSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred ccccCcccChhhccccCCe-eee-cchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 3455667899997776654 577 4899999999854 5789999998753
No 153
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=40.14 E-value=23 Score=25.88 Aligned_cols=13 Identities=15% Similarity=0.598 Sum_probs=6.7
Q ss_pred eeecc--cccccccc
Q 021988 54 LECPV--CTNLMYPP 66 (304)
Q Consensus 54 l~CpI--C~~~l~~P 66 (304)
+.|++ |...+...
T Consensus 7 ~~C~~~~C~~~f~~~ 21 (119)
T 2jp9_A 7 FMCAYPGCNKRYFKL 21 (119)
T ss_dssp BCCCSTTSCCCBSCH
T ss_pred eeCCCCCCcchhCCH
Confidence 45554 55555543
No 154
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=39.64 E-value=13 Score=32.00 Aligned_cols=30 Identities=23% Similarity=0.625 Sum_probs=22.6
Q ss_pred eeeccccccccccc--cccc-ccCeecccCccc
Q 021988 54 LECPVCTNLMYPPI--HQCP-NGHTLCSNCKNR 83 (304)
Q Consensus 54 l~CpIC~~~l~~Pi--~qC~-~GH~fC~~C~~~ 83 (304)
-.|.+|...|..-. ..|. ||++||..|...
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 47999999887332 4554 499999999864
No 155
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.38 E-value=39 Score=23.78 Aligned_cols=40 Identities=15% Similarity=0.274 Sum_probs=29.8
Q ss_pred eeeccccccccccc---ccccccCeecccCcccccCCCCCCcc
Q 021988 54 LECPVCTNLMYPPI---HQCPNGHTLCSNCKNRVHNCCPTCRF 93 (304)
Q Consensus 54 l~CpIC~~~l~~Pi---~qC~~GH~fC~~C~~~~~~~CP~Cr~ 93 (304)
-.|..|..-+.-+- +.|.||..||..=+..-...|+..-+
T Consensus 16 ~rC~~C~kk~gL~~~egf~CrCg~~FC~~HRy~e~H~C~fDyk 58 (67)
T 1x4w_A 16 RRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHM 58 (67)
T ss_dssp TBCSSSCCBCCHHHHHHHCCSSSCCCCTTTCSTGGGTCSSCSS
T ss_pred CcchhhCCeecccccCceEecCCCEehhccCCccccCCccccc
Confidence 37999999988763 79999999999876544445665433
No 156
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=38.68 E-value=4.4 Score=33.91 Aligned_cols=45 Identities=24% Similarity=0.490 Sum_probs=33.1
Q ss_pred Ceeeeccccccccc--ccccccccCeecccCcccc-cC--CCCCCccCCC
Q 021988 52 ELLECPVCTNLMYP--PIHQCPNGHTLCSNCKNRV-HN--CCPTCRFDLG 96 (304)
Q Consensus 52 ~~l~CpIC~~~l~~--Pi~qC~~GH~fC~~C~~~~-~~--~CP~Cr~~~~ 96 (304)
+-|.|..|...|.. ..+.-..|..+|..|..+. .. .|..|..+|.
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 45789999998875 2233456899999998765 23 5999988775
No 157
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=37.81 E-value=18 Score=26.15 Aligned_cols=46 Identities=24% Similarity=0.486 Sum_probs=29.6
Q ss_pred CccccCcc-chhccccc-cCcccccCCCCCCCCcccc-ChhhHHHHhhhhCCC
Q 021988 121 CHDIFPYY-GKLKHEQH-CRFRPYNCPYAGSECSVTG-DIPTLVAHLKDDHQV 170 (304)
Q Consensus 121 C~~~~~~~-~~~~He~~-C~~~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 170 (304)
|+..+... .|..|+.. =.-+|+.|+. |+... ....|..|++..|..
T Consensus 34 Cgk~F~~~~~L~~H~~~H~~~k~~~C~~----C~k~F~~~~~L~~H~~~~H~~ 82 (85)
T 2lv2_A 34 CGESFASKGAQERHLRLLHAAQVFPCKY----CPATFYSSPGLTRHINKCHPS 82 (85)
T ss_dssp SCCEESSHHHHHHHHHTTSCSSSEECTT----SSCEESSHHHHHHHHHTTCTT
T ss_pred CCCCcCcHHHHhhhhhhccCCCccCCCC----CCCEeCCHHHHHHhCcccCcC
Confidence 55444332 44555542 2346888986 87765 458999999988863
No 158
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=37.68 E-value=16 Score=34.03 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=28.1
Q ss_pred CCCCeeeecccccccccc---ccccc-ccCeecccCccccc
Q 021988 49 GVHELLECPVCTNLMYPP---IHQCP-NGHTLCSNCKNRVH 85 (304)
Q Consensus 49 ~l~~~l~CpIC~~~l~~P---i~qC~-~GH~fC~~C~~~~~ 85 (304)
.....-.|..|...+..- -++|. ||..+|+.|..++.
T Consensus 353 ~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~ 393 (406)
T 2vrw_B 353 SFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP 393 (406)
T ss_dssp CCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC
T ss_pred cCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC
Confidence 345556799999998743 25675 69999999998874
No 159
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.26 E-value=10 Score=25.85 Aligned_cols=33 Identities=18% Similarity=0.450 Sum_probs=21.8
Q ss_pred CeeeecccccccccccccccccCeecccCcccc
Q 021988 52 ELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV 84 (304)
Q Consensus 52 ~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~ 84 (304)
+=|.|..|...|....+.-..|..+|..|..+.
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 30 ECFVCTACRKQLSGQRFTARDDFAYCLNCFCDL 62 (70)
T ss_dssp TTSBCSSSCCBCTTSCCEESSSSEECHHHHHHH
T ss_pred CCCccCCCCCcCCcCceEeeCCeEECHHHHHHH
Confidence 446788888877654343445788888887653
No 160
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=36.77 E-value=18 Score=25.58 Aligned_cols=29 Identities=21% Similarity=0.598 Sum_probs=21.5
Q ss_pred eeccccccccccc--cccc-ccCeecccCccc
Q 021988 55 ECPVCTNLMYPPI--HQCP-NGHTLCSNCKNR 83 (304)
Q Consensus 55 ~CpIC~~~l~~Pi--~qC~-~GH~fC~~C~~~ 83 (304)
.|.+|...|..-. ..|. +|.+||..|...
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred cccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 6999999887432 3453 399999999764
No 161
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=35.72 E-value=25 Score=28.36 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=9.9
Q ss_pred eeee--cccccccccc
Q 021988 53 LLEC--PVCTNLMYPP 66 (304)
Q Consensus 53 ~l~C--pIC~~~l~~P 66 (304)
.+.| ++|...+...
T Consensus 42 ~~~C~~~~C~~~f~~~ 57 (190)
T 1tf6_A 42 PFPCKEEGCEKGFTSL 57 (190)
T ss_dssp SSCCSSTTCCCCCSSH
T ss_pred CccCCCCCCChhhCCH
Confidence 3678 7788877654
No 162
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=35.55 E-value=8.9 Score=27.15 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=21.8
Q ss_pred CeeeecccccccccccccccccCeecccCcccc-cCCCCCCc
Q 021988 52 ELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV-HNCCPTCR 92 (304)
Q Consensus 52 ~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~-~~~CP~Cr 92 (304)
+=|.|..|...|..-.+.-..|..+|..|..+. ..+|-.|.
T Consensus 33 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg 74 (81)
T 1a7i_A 33 CCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYG 74 (81)
T ss_dssp SSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC-------
T ss_pred ccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccC
Confidence 446788888777654333345778888887654 34555554
No 163
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}
Probab=35.14 E-value=48 Score=22.43 Aligned_cols=52 Identities=23% Similarity=0.618 Sum_probs=30.6
Q ss_pred cCCCCCCCCccccCcc-chhcccc-----cc---CcccccCCCCCCCCcccc-ChhhHHHHhhhhC
Q 021988 113 PCKYQSLGCHDIFPYY-GKLKHEQ-----HC---RFRPYNCPYAGSECSVTG-DIPTLVAHLKDDH 168 (304)
Q Consensus 113 ~C~~~~~GC~~~~~~~-~~~~He~-----~C---~~~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H 168 (304)
.|... +|...+.-. ++..|.. .= .-.++.|.-. +|++.+ ....|..|++.+|
T Consensus 3 ~C~W~--~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~--~C~~~~~~~~~L~~Hir~~H 64 (64)
T 1zw8_A 3 KCKWK--ECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWE--DCDFLGDDTASIVNHINAQH 64 (64)
T ss_dssp CCCCT--TCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCS--SCCCEESSHHHHHHHHHHHC
T ss_pred eEeeC--CCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCC--CCcCCCCChHHHHhhccccC
Confidence 45553 576655433 3445532 11 1136778753 488766 4478999998877
No 164
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=35.07 E-value=15 Score=33.66 Aligned_cols=44 Identities=20% Similarity=0.394 Sum_probs=29.4
Q ss_pred CCeeeecccccccccccccc---ccc--CeecccCcccc---cCCCCCCccC
Q 021988 51 HELLECPVCTNLMYPPIHQC---PNG--HTLCSNCKNRV---HNCCPTCRFD 94 (304)
Q Consensus 51 ~~~l~CpIC~~~l~~Pi~qC---~~G--H~fC~~C~~~~---~~~CP~Cr~~ 94 (304)
...-.||+|.....--++.= ..| +..|+-|-..+ ...||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 34557999998765444321 235 47899998876 3678888664
No 165
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.89 E-value=28 Score=21.01 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=18.0
Q ss_pred ccccCCCCCCCCcccc-ChhhHHHHhhh
Q 021988 140 RPYNCPYAGSECSVTG-DIPTLVAHLKD 166 (304)
Q Consensus 140 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~ 166 (304)
+|+.|+.. .|++.. ....|..|++.
T Consensus 8 kp~~C~~~--~C~k~F~~~~~L~~H~r~ 33 (38)
T 2eln_A 8 ILLKCPTD--GCDYSTPDKYKLQAHLKV 33 (38)
T ss_dssp CCEECSSS--SCCCEESCHHHHHHHHHH
T ss_pred CCCCCCCC--CCCCccCCHHHHHHHHHh
Confidence 57889853 388876 44788899764
No 166
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.16 E-value=13 Score=25.56 Aligned_cols=33 Identities=15% Similarity=0.460 Sum_probs=22.7
Q ss_pred CeeeecccccccccccccccccCeecccCcccc
Q 021988 52 ELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV 84 (304)
Q Consensus 52 ~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~ 84 (304)
+=|.|..|...|....+.-..|..+|..|..+.
T Consensus 34 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 66 (72)
T 1x4l_A 34 DCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI 66 (72)
T ss_dssp TTCBCSSSCCBCTTSCCEECSSSEECHHHHHTC
T ss_pred ccCEeccCCCcCCCCccEeECCEEEChhHcCcc
Confidence 447788888888754343356888888887654
No 167
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=34.02 E-value=25 Score=26.43 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=37.8
Q ss_pred hhhccccCCCCCCCCccccCcc-chhccccccCcccccCCCCCCCCcccc-ChhhHHHHhhhhCCC
Q 021988 107 AESLELPCKYQSLGCHDIFPYY-GKLKHEQHCRFRPYNCPYAGSECSVTG-DIPTLVAHLKDDHQV 170 (304)
Q Consensus 107 l~~l~v~C~~~~~GC~~~~~~~-~~~~He~~C~~~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~ 170 (304)
...-++.|+. |+..+... .+..|+..= -+|+.|+. |+... ....|..|++..|.+
T Consensus 70 ~~~~~~~C~~----C~k~f~~~~~l~~H~~~H-~~~~~C~~----C~k~f~~~~~l~~H~~~h~~~ 126 (129)
T 2wbt_A 70 KAISQFVCPL----CLMPFSSSVSLKQHIRYT-EHTKVCPV----CKKEFTSTDSALDHVCKKHNI 126 (129)
T ss_dssp HHHCSEECTT----TCCEESSHHHHHHHHHHT-CCCCBCTT----TCCBCSSHHHHHHHHHHTTCC
T ss_pred CCCCCeECCC----CCcccCCHhHHHHHHHHC-CCCCCCCC----CCcccCCHHHHHHHHHHHCCc
Confidence 3345677775 87776543 466776543 56788986 77665 447899999988875
No 168
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=33.96 E-value=20 Score=33.70 Aligned_cols=59 Identities=20% Similarity=0.386 Sum_probs=39.5
Q ss_pred CCCeeeeccccccccccc--ccccccCeecccCcc-------cccCCCCCCccCCCC---ccchHHHHHhhhc
Q 021988 50 VHELLECPVCTNLMYPPI--HQCPNGHTLCSNCKN-------RVHNCCPTCRFDLGN---IRCLALEKVAESL 110 (304)
Q Consensus 50 l~~~l~CpIC~~~l~~Pi--~qC~~GH~fC~~C~~-------~~~~~CP~Cr~~~~~---~r~~~le~~l~~l 110 (304)
..=.|.||+=...+..|+ ..| .|+-|-+-.. .-.-.||+|...+.. .-+..+.+++..+
T Consensus 246 ~~vSL~CPlS~~ri~~PvRg~~C--~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 246 TIMSLQCPISYTRMKYPSKSINC--KHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC 316 (371)
T ss_dssp EEEESBCTTTSSBCSSEEEETTC--CSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred eEEeecCCCccccccccCcCCcC--CCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence 344588999999999998 456 8986655421 112579999887753 3355566666554
No 169
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=33.67 E-value=29 Score=25.51 Aligned_cols=32 Identities=31% Similarity=0.637 Sum_probs=22.9
Q ss_pred Ceeeeccccccccccc--cccc-ccCeecccCccc
Q 021988 52 ELLECPVCTNLMYPPI--HQCP-NGHTLCSNCKNR 83 (304)
Q Consensus 52 ~~l~CpIC~~~l~~Pi--~qC~-~GH~fC~~C~~~ 83 (304)
+.-.|.+|...|..-. ..|. ||++||..|...
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 4457999999876321 3453 399999999875
No 170
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=33.00 E-value=12 Score=25.88 Aligned_cols=42 Identities=26% Similarity=0.468 Sum_probs=20.9
Q ss_pred CCccccCc-cchhccccc-cCcccccCCCCCCCCcccc-ChhhHHHHhh
Q 021988 120 GCHDIFPY-YGKLKHEQH-CRFRPYNCPYAGSECSVTG-DIPTLVAHLK 165 (304)
Q Consensus 120 GC~~~~~~-~~~~~He~~-C~~~p~~CP~~g~~C~~~g-~~~~L~~Hl~ 165 (304)
+|+..+.. ..+..|... -.-.++.|+. |+... ....|..|++
T Consensus 42 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~ 86 (89)
T 2wbs_A 42 GCGWKFARSDELTRHYRKHTGHRPFQCQK----CDRAFSRSDHLALHMK 86 (89)
T ss_dssp TTCCEESSHHHHHHHHHHHHCCCCEECSS----SSCEESSHHHHHHHGG
T ss_pred CCCCccCCHHHHHHHHHHcCCCCCccCCC----CCcccCCHHHHHHHHH
Confidence 35554432 234445431 1234667765 65544 3366777765
No 171
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=32.28 E-value=21 Score=28.05 Aligned_cols=42 Identities=19% Similarity=0.494 Sum_probs=26.9
Q ss_pred Ceeeeccccccccccc--cccc-ccCeecccCcccc---cCCCCCCcc
Q 021988 52 ELLECPVCTNLMYPPI--HQCP-NGHTLCSNCKNRV---HNCCPTCRF 93 (304)
Q Consensus 52 ~~l~CpIC~~~l~~Pi--~qC~-~GH~fC~~C~~~~---~~~CP~Cr~ 93 (304)
+.-.|..|...|..-. ..|. ||.+||+.|..+. ...|-.|-.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 3357999999887532 3453 4999999998753 234555533
No 172
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=31.73 E-value=15 Score=30.61 Aligned_cols=39 Identities=23% Similarity=0.497 Sum_probs=19.7
Q ss_pred Ceeeecccccccccc-cccccccCeecccCcccccCCCCCCccCCC
Q 021988 52 ELLECPVCTNLMYPP-IHQCPNGHTLCSNCKNRVHNCCPTCRFDLG 96 (304)
Q Consensus 52 ~~l~CpIC~~~l~~P-i~qC~~GH~fC~~C~~~~~~~CP~Cr~~~~ 96 (304)
..-.|+.|.+.+.+. .+. ..|..+-..| -+|..|+.++.
T Consensus 114 ~~~~C~~C~~~I~~~~~v~-a~~~~~H~~C-----F~C~~C~~~L~ 153 (192)
T 1b8t_A 114 GSDGCPRCGQAVYAAEKVI-GAGKSWHKSC-----FRCAKCGKSLE 153 (192)
T ss_dssp CCEECTTTSCEECSSSCEE-ETTEEECTTT-----CBCTTTCCBCC
T ss_pred CCCcCCCCCCEecCcEEEe-cCCCccchhc-----CCccccCCCCC
Confidence 345688888877532 222 2244443344 23555555553
No 173
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=31.50 E-value=20 Score=23.97 Aligned_cols=45 Identities=20% Similarity=0.377 Sum_probs=26.0
Q ss_pred CccccCcc-chhccccc-cCcccccCCCCCCCCcccc-ChhhHHHHhhhhCC
Q 021988 121 CHDIFPYY-GKLKHEQH-CRFRPYNCPYAGSECSVTG-DIPTLVAHLKDDHQ 169 (304)
Q Consensus 121 C~~~~~~~-~~~~He~~-C~~~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 169 (304)
|...+... .+..|+.. -.-+|+.|+. |+... ....|..|++..+.
T Consensus 20 C~k~f~~~~~L~~H~~~h~~~~~~~C~~----C~~~f~~~~~L~~H~~~H~~ 67 (72)
T 1x6e_A 20 CGKAFSRSSILVQHQRVHTGEKPYKCLE----CGKAFSQNSGLINHQRIHTS 67 (72)
T ss_dssp SCCEESSHHHHHHHHHGGGCSCCEECSS----SCCEESSHHHHHHHHHHHHS
T ss_pred CCCccCCHHHHHHHHHhcCCCCCeECCC----CCcccCCHHHHHHHHHhcCC
Confidence 55444332 34455432 1235788886 77665 34789999876544
No 174
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=31.23 E-value=29 Score=25.65 Aligned_cols=79 Identities=15% Similarity=0.238 Sum_probs=47.0
Q ss_pred CCCC--CCccCCCCccchHHHH-HhhhccccCCCCCCCCccccCcc-chhcccccc-CcccccCCCCCCCCcccc-Chhh
Q 021988 86 NCCP--TCRFDLGNIRCLALEK-VAESLELPCKYQSLGCHDIFPYY-GKLKHEQHC-RFRPYNCPYAGSECSVTG-DIPT 159 (304)
Q Consensus 86 ~~CP--~Cr~~~~~~r~~~le~-~l~~l~v~C~~~~~GC~~~~~~~-~~~~He~~C-~~~p~~CP~~g~~C~~~g-~~~~ 159 (304)
-.|| .|...+.....+..-. .-..-.+.|+. |+..+... .+..|+..- .-.++.|+.. .|+... ....
T Consensus 6 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~----C~~~f~~~~~l~~H~~~h~~~~~~~C~~~--~C~~~f~~~~~ 79 (124)
T 1ubd_C 6 IACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAE----CGKAFVESSKLKRHQLVHTGEKPFQCTFE--GCGKRFSLDFN 79 (124)
T ss_dssp EECCSTTCCCEESSHHHHHHHHGGGSCCCEECTT----TCCEESSHHHHHHHGGGTSCCCCEECCST--TCCCEESCHHH
T ss_pred ccCCCCCCcCccCCHHHHHHHHHHcCCCCeECCC----CCchhCCHHHHHHHHHHcCCCCCeeCCCC--CCcCccCCHHH
Confidence 3588 7987765432221111 11234566764 88776544 567787643 3467889853 377765 4578
Q ss_pred HHHHhhhhCCC
Q 021988 160 LVAHLKDDHQV 170 (304)
Q Consensus 160 L~~Hl~~~H~~ 170 (304)
|..|++..+..
T Consensus 80 l~~H~~~h~~~ 90 (124)
T 1ubd_C 80 LRTHVRIHTGD 90 (124)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHhCCC
Confidence 99998765543
No 175
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.98 E-value=45 Score=22.36 Aligned_cols=45 Identities=22% Similarity=0.410 Sum_probs=25.5
Q ss_pred CccccCc-cchhccccc-cCcccccCCCCCCCCcccc-ChhhHHHHhhhhCC
Q 021988 121 CHDIFPY-YGKLKHEQH-CRFRPYNCPYAGSECSVTG-DIPTLVAHLKDDHQ 169 (304)
Q Consensus 121 C~~~~~~-~~~~~He~~-C~~~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 169 (304)
|...+.. ..+..|+.. -.-+++.|+. |+... ....|..|++..+.
T Consensus 24 C~~~f~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~L~~H~~~H~~ 71 (77)
T 2cot_A 24 CGKSFSHSSDLSKHRRTHTGEKPYKCDE----CGKAFIQRSHLIGHHRVHTG 71 (77)
T ss_dssp SCCBCSCHHHHHHHHTTTCCSCSEECSS----SCCEESSHHHHHHHGGGSCC
T ss_pred CCcccCCHHHHHHHHHHcCCCcCeeCCC----CCCccCCHHHHHHHHHHhCC
Confidence 4444432 234455432 1235788886 77655 44789999875443
No 176
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.34 E-value=22 Score=25.02 Aligned_cols=33 Identities=18% Similarity=0.526 Sum_probs=21.8
Q ss_pred CeeeecccccccccccccccccCeecccCcccc
Q 021988 52 ELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV 84 (304)
Q Consensus 52 ~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~ 84 (304)
+=|.|..|...|..-.+.-..|.++|..|..+.
T Consensus 42 ~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~ 74 (82)
T 2ehe_A 42 GCFRCCRCQRSLADEPFTCQDSELLCNDCYCSA 74 (82)
T ss_dssp TTSBCTTTCCBCSSCCEEEETTEEEETTTSSCC
T ss_pred cCCeecCCCCccCCCccEeeCCEEECHHHHhhh
Confidence 446788888887753333345778888887654
No 177
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.16 E-value=17 Score=26.26 Aligned_cols=12 Identities=25% Similarity=0.805 Sum_probs=6.8
Q ss_pred eecccccccccc
Q 021988 55 ECPVCTNLMYPP 66 (304)
Q Consensus 55 ~CpIC~~~l~~P 66 (304)
.|+.|.+.+...
T Consensus 27 ~C~~C~~~I~~~ 38 (90)
T 2dar_A 27 MCAHCNQVIRGP 38 (90)
T ss_dssp BBSSSCCBCCSC
T ss_pred CCccCCCEecce
Confidence 466666655443
No 178
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=30.00 E-value=25 Score=25.82 Aligned_cols=30 Identities=20% Similarity=0.426 Sum_probs=22.1
Q ss_pred eeeccccccccccc--cccc-ccCeecccCccc
Q 021988 54 LECPVCTNLMYPPI--HQCP-NGHTLCSNCKNR 83 (304)
Q Consensus 54 l~CpIC~~~l~~Pi--~qC~-~GH~fC~~C~~~ 83 (304)
-.|.+|...|..-. ..|. ||.+||..|...
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 36999999877432 3453 399999999864
No 179
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=29.83 E-value=56 Score=27.42 Aligned_cols=43 Identities=23% Similarity=0.565 Sum_probs=26.0
Q ss_pred eecccccccccc-----cccccc-c---CeecccCccc----c-------cCCCCCCccCCCC
Q 021988 55 ECPVCTNLMYPP-----IHQCPN-G---HTLCSNCKNR----V-------HNCCPTCRFDLGN 97 (304)
Q Consensus 55 ~CpIC~~~l~~P-----i~qC~~-G---H~fC~~C~~~----~-------~~~CP~Cr~~~~~ 97 (304)
.||+|..+..+. ++||.. . |.-|..=-.. . .-.||.|+..-+.
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 499999987643 568852 2 4444432110 0 2589999886553
No 180
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.62 E-value=15 Score=25.48 Aligned_cols=30 Identities=27% Similarity=0.685 Sum_probs=15.3
Q ss_pred eeecccccccccccccccccCeecc-cCccc
Q 021988 54 LECPVCTNLMYPPIHQCPNGHTLCS-NCKNR 83 (304)
Q Consensus 54 l~CpIC~~~l~~Pi~qC~~GH~fC~-~C~~~ 83 (304)
|.|..|...|..-.+.-..|..+|. .|..+
T Consensus 37 F~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~ 67 (76)
T 2cu8_A 37 LKCERCSKTLTPGGHAEHDGKPFCHKPCYAT 67 (76)
T ss_dssp CBCSSSCCBCCTTSCEEETTEEECTTTHHHH
T ss_pred CCCCCCCCccCCCceEeECCEEecchHHHHH
Confidence 4566666665533222234566666 46543
No 181
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.46 E-value=14 Score=25.17 Aligned_cols=31 Identities=13% Similarity=0.415 Sum_probs=17.8
Q ss_pred eeeecccccccccccccccccCeecccCccc
Q 021988 53 LLECPVCTNLMYPPIHQCPNGHTLCSNCKNR 83 (304)
Q Consensus 53 ~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~ 83 (304)
=|.|..|...|....+.=..|..+|..|..+
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 61 (69)
T 2cur_A 31 CFVCVTCSKKLAGQRFTAVEDQYYCVDCYKN 61 (69)
T ss_dssp TTBCTTTCCBCTTSCEEECSSCEEEHHHHHH
T ss_pred cCEECCCCCCCCCCccEeECCEEECHHHhHH
Confidence 3566777766654333223466777766654
No 182
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=29.16 E-value=8.7 Score=21.95 Aligned_cols=14 Identities=21% Similarity=0.422 Sum_probs=5.2
Q ss_pred CccccCccchhccc
Q 021988 121 CHDIFPYYGKLKHE 134 (304)
Q Consensus 121 C~~~~~~~~~~~He 134 (304)
|+..++...+..|.
T Consensus 12 cqq~mpaahin~hl 25 (29)
T 3vhs_A 12 CQQMMPAAHINSHL 25 (29)
T ss_dssp TCCEEEGGGHHHHH
T ss_pred HHHhCcHHHHHHHH
Confidence 33333333333333
No 183
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=29.09 E-value=20 Score=20.91 Aligned_cols=14 Identities=21% Similarity=0.334 Sum_probs=8.5
Q ss_pred eeeecccccccccc
Q 021988 53 LLECPVCTNLMYPP 66 (304)
Q Consensus 53 ~l~CpIC~~~l~~P 66 (304)
++.||+|...+-++
T Consensus 3 k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 3 DFCCPKCQYQAPDM 16 (28)
T ss_dssp CEECTTSSCEESSH
T ss_pred cccCccccccCcCh
Confidence 45666666665554
No 184
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.38 E-value=97 Score=22.91 Aligned_cols=45 Identities=22% Similarity=0.512 Sum_probs=26.8
Q ss_pred CCCCeeeecccccccccccccccc--c--CeecccCcccc-----cCCCCCCccC
Q 021988 49 GVHELLECPVCTNLMYPPIHQCPN--G--HTLCSNCKNRV-----HNCCPTCRFD 94 (304)
Q Consensus 49 ~l~~~l~CpIC~~~l~~Pi~qC~~--G--H~fC~~C~~~~-----~~~CP~Cr~~ 94 (304)
+..+...| +|..+....+++|.+ . ..|=..|+.-. .-.||.|+..
T Consensus 32 d~~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CSCCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCC
T ss_pred CCCCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCc
Confidence 33456678 999987666678764 1 12333454321 2469999764
No 185
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=28.21 E-value=41 Score=17.42 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=16.2
Q ss_pred cccCCCCCCCCcccc-ChhhHHHHhhhhCC
Q 021988 141 PYNCPYAGSECSVTG-DIPTLVAHLKDDHQ 169 (304)
Q Consensus 141 p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 169 (304)
|+.|+. |+... ....|..|+...|.
T Consensus 2 ~~~C~~----C~k~f~~~~~l~~H~~~~H~ 27 (30)
T 1paa_A 2 AYACGL----CNRAFTRRDLLIRHAQKIHS 27 (30)
T ss_dssp CSBCTT----TCCBCSSSHHHHHHHTTTSC
T ss_pred CcCCcc----cCcccCChHHHHHHHHHHcc
Confidence 567775 66554 34688899655564
No 186
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.65 E-value=31 Score=24.01 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=19.8
Q ss_pred cCeecccCcccc-cCCCCCCccCCC
Q 021988 73 GHTLCSNCKNRV-HNCCPTCRFDLG 96 (304)
Q Consensus 73 GH~fC~~C~~~~-~~~CP~Cr~~~~ 96 (304)
|..+|..|..+. ...|+.|..+|.
T Consensus 2 g~~yC~~cy~~~~~~~C~~C~~~I~ 26 (80)
T 2cuq_A 2 SSGSSGPCYENKFAPRCARCSKTLT 26 (80)
T ss_dssp CCCSCCCCCCCCSSCCCTTTCCCCC
T ss_pred CcEEcHHHHccccCCcCCCCCCEec
Confidence 678999998865 578999988875
No 187
>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A
Probab=27.21 E-value=12 Score=23.09 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=13.6
Q ss_pred cccCCCCCCCCccccCccchhccccccC
Q 021988 111 ELPCKYQSLGCHDIFPYYGKLKHEQHCR 138 (304)
Q Consensus 111 ~v~C~~~~~GC~~~~~~~~~~~He~~C~ 138 (304)
.+.||| -..-.++...+..|...|.
T Consensus 5 ~v~CPy---d~~H~i~~~~l~~Hl~kC~ 29 (37)
T 2vy4_A 5 VVICPY---DSNHHMPKSSLAKHMASCR 29 (37)
T ss_dssp CEECTT---TSSCEECGGGHHHHHHHHH
T ss_pred EEECCC---CCCeEeCHHHHHHHHHHHh
Confidence 345665 2455555556666655554
No 188
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=27.05 E-value=48 Score=24.38 Aligned_cols=39 Identities=21% Similarity=0.580 Sum_probs=26.1
Q ss_pred CCCeeeecc--ccccccccccccc-ccCeecccCcccccCCCC
Q 021988 50 VHELLECPV--CTNLMYPPIHQCP-NGHTLCSNCKNRVHNCCP 89 (304)
Q Consensus 50 l~~~l~CpI--C~~~l~~Pi~qC~-~GH~fC~~C~~~~~~~CP 89 (304)
......|+. |...-..| +.|. ||..||..=...-...|+
T Consensus 22 ~~~~~~C~~~~Ck~~~~l~-f~C~~C~~~FC~~HR~~e~H~C~ 63 (86)
T 1wfe_A 22 EHKSYSCSFKGCTDVELVA-VICPYCEKNFCLRHRHQSDHDCE 63 (86)
T ss_dssp CSCCEECCSTTCCCEESSC-EECTTTCCEECGGGCSTGGGTCS
T ss_pred CCCCCCCCCcCCCCCCccc-eECCCCCcccccccCCccCCCCC
Confidence 344567999 99886666 6887 799998754333234565
No 189
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=26.99 E-value=63 Score=17.00 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=16.1
Q ss_pred ccccCCCCCCCCcccc-ChhhHHHHhhh
Q 021988 140 RPYNCPYAGSECSVTG-DIPTLVAHLKD 166 (304)
Q Consensus 140 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~ 166 (304)
+|+.|+.+ .|+... ....|..|.+.
T Consensus 1 kp~~C~~~--~C~k~f~~~~~L~~H~~~ 26 (31)
T 1sp2_A 1 RPFMCTWS--YCGKRFTRSDELQRHKRT 26 (31)
T ss_dssp CCCBCCST--TCCCBCSSHHHHHHHHTT
T ss_pred CCcCCcCC--CCCcccCCHhHHHHHHHH
Confidence 36778632 377765 34688888764
No 190
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=26.74 E-value=48 Score=16.93 Aligned_cols=25 Identities=36% Similarity=0.868 Sum_probs=16.4
Q ss_pred cccCCCCCCCCcccc-ChhhHHHHhhhhCC
Q 021988 141 PYNCPYAGSECSVTG-DIPTLVAHLKDDHQ 169 (304)
Q Consensus 141 p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 169 (304)
|+.|+. |+... ....|..|....|.
T Consensus 2 ~~~C~~----C~k~f~~~~~l~~H~~~h~~ 27 (30)
T 1klr_A 2 TYQCQY----CEFRSADSSNLKTHIKTKHS 27 (30)
T ss_dssp CCCCSS----SSCCCSCSHHHHHHHHHHTS
T ss_pred CccCCC----CCCccCCHHHHHHHHHHHcc
Confidence 567765 65554 34688899876554
No 191
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.38 E-value=15 Score=25.08 Aligned_cols=31 Identities=16% Similarity=0.364 Sum_probs=17.3
Q ss_pred eeeecccccccccccccccccCeecccCccc
Q 021988 53 LLECPVCTNLMYPPIHQCPNGHTLCSNCKNR 83 (304)
Q Consensus 53 ~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~ 83 (304)
=|.|..|...|..-.+.-..|..+|..|..+
T Consensus 33 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1wyh_A 33 CFLCSGCEQPLGSRSFVPDKGAHYCVPCYEN 63 (72)
T ss_dssp TCBCTTTCCBTTTSCEEEETTEEEEHHHHHH
T ss_pred cCeECCCCCcCCCCccCCcCCeEECHHHHHH
Confidence 3566666666654323233466667666654
No 192
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.10 E-value=13 Score=25.35 Aligned_cols=30 Identities=13% Similarity=0.412 Sum_probs=15.0
Q ss_pred eeecccccccccccccccccCeecccCccc
Q 021988 54 LECPVCTNLMYPPIHQCPNGHTLCSNCKNR 83 (304)
Q Consensus 54 l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~ 83 (304)
|.|..|...|..-.+.-..|..+|..|..+
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1x4k_A 34 FICHRCQQPIGTKSFIPKDNQNFCVPCYEK 63 (72)
T ss_dssp TCCSSSCCCCCSSSEEEETTEEEEHHHHHH
T ss_pred CcccccCCccCCCccCccCCeEECHHHHhH
Confidence 455566555554322223455666665543
No 193
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=25.80 E-value=14 Score=24.92 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=16.2
Q ss_pred eeeecccccccccccccccccCeecccCcc
Q 021988 53 LLECPVCTNLMYPPIHQCPNGHTLCSNCKN 82 (304)
Q Consensus 53 ~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~ 82 (304)
=|.|..|...|....+.-..|..+|..|..
T Consensus 31 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~ 60 (66)
T 1nyp_A 31 HFVCAKCEKPFLGHRHYERKGLAYCETHYN 60 (66)
T ss_dssp TCBCTTTCCBCSSSCCEEETTEEECHHHHH
T ss_pred cCEECCCCCCCCCCceEeECCcEECHHHHH
Confidence 355666666665432333346666666654
No 194
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.64 E-value=36 Score=23.10 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=20.2
Q ss_pred ccccCCCCCCCCcccc-ChhhHHHHhhhhCCCC
Q 021988 140 RPYNCPYAGSECSVTG-DIPTLVAHLKDDHQVD 171 (304)
Q Consensus 140 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~~ 171 (304)
.++.|+. |+... ....|..|++..|...
T Consensus 46 ~~~~C~~----C~~~f~~~~~L~~H~~~h~~~~ 74 (86)
T 1x6h_A 46 AAFVCSK----CGKTFTRRNTMARHADNCAGPD 74 (86)
T ss_dssp CCEECSS----SCCEESCHHHHHHHHHHCCCCC
T ss_pred cceECCC----CCChhCCHHHHHHHHHHccCCC
Confidence 4678875 77655 4578999988777654
No 195
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=25.41 E-value=17 Score=24.53 Aligned_cols=32 Identities=25% Similarity=0.599 Sum_probs=19.0
Q ss_pred CeeeecccccccccccccccccCeec-ccCccc
Q 021988 52 ELLECPVCTNLMYPPIHQCPNGHTLC-SNCKNR 83 (304)
Q Consensus 52 ~~l~CpIC~~~l~~Pi~qC~~GH~fC-~~C~~~ 83 (304)
+=|.|..|...|..-.+.-..|..+| ..|..+
T Consensus 31 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k 63 (65)
T 2iyb_E 31 ECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKR 63 (65)
T ss_dssp TTSBCTTTCCBCTTSCCEEETTEEESSHHHHHT
T ss_pred CCEECCCCCCcCCCCceEEECCEEecCHHHhhh
Confidence 34667777777764333334467777 666544
No 196
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=25.41 E-value=29 Score=26.22 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=14.4
Q ss_pred cCCCCeeeecccccccc
Q 021988 48 NGVHELLECPVCTNLMY 64 (304)
Q Consensus 48 ~~l~~~l~CpIC~~~l~ 64 (304)
..+.+.|.||+|...|.
T Consensus 3 ~~LLdILaCP~cK~pL~ 19 (97)
T 2k5r_A 3 RKLLHLLCSPDTRQPLS 19 (97)
T ss_dssp TTTCSSCCCCTTSSCCE
T ss_pred hHHhhheECCCCCCccc
Confidence 46889999999998765
No 197
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=25.34 E-value=15 Score=25.49 Aligned_cols=11 Identities=18% Similarity=0.606 Sum_probs=5.1
Q ss_pred eeecccccccc
Q 021988 54 LECPVCTNLMY 64 (304)
Q Consensus 54 l~CpIC~~~l~ 64 (304)
|.|..|...|.
T Consensus 47 F~C~~C~~~L~ 57 (77)
T 2egq_A 47 FHCKKCSVNLA 57 (77)
T ss_dssp CBCSSSCCBCT
T ss_pred CEehhcCCCCC
Confidence 34444444444
No 198
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=25.02 E-value=62 Score=16.41 Aligned_cols=23 Identities=17% Similarity=0.405 Sum_probs=15.3
Q ss_pred cccCCCCCCCCcccc-ChhhHHHHhhhh
Q 021988 141 PYNCPYAGSECSVTG-DIPTLVAHLKDD 167 (304)
Q Consensus 141 p~~CP~~g~~C~~~g-~~~~L~~Hl~~~ 167 (304)
|+.|+. |+... ....|..|....
T Consensus 2 ~~~C~~----C~~~f~~~~~l~~H~~~h 25 (29)
T 1ard_A 2 SFVCEV----CTRAFARQEHLKRHYRSH 25 (29)
T ss_dssp CCBCTT----TCCBCSSHHHHHHHHHHH
T ss_pred CeECCC----CCcccCCHHHHHHHHHHh
Confidence 567775 66654 346888887753
No 199
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.93 E-value=14 Score=25.15 Aligned_cols=31 Identities=26% Similarity=0.611 Sum_probs=17.0
Q ss_pred eeeecccccccccccccccccCeecccCccc
Q 021988 53 LLECPVCTNLMYPPIHQCPNGHTLCSNCKNR 83 (304)
Q Consensus 53 ~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~ 83 (304)
=|.|..|...|..-.+.-..|..+|..|..+
T Consensus 31 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~ 61 (70)
T 2d8x_A 31 CFRCDLCQEVLADIGFVKNAGRHLCRPCHNR 61 (70)
T ss_dssp TSBCSSSCCBCSSSCCEEETTEEECHHHHHH
T ss_pred CCEeCCCCCcCCCCccEeECCeEECHHHhhh
Confidence 3556666666654332223466666666554
No 200
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=24.49 E-value=55 Score=21.70 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=18.2
Q ss_pred ccccCCCCCCCCcccc-ChhhHHHHhhhhCC
Q 021988 140 RPYNCPYAGSECSVTG-DIPTLVAHLKDDHQ 169 (304)
Q Consensus 140 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~ 169 (304)
+++.|+. |+... ....|..|++..+.
T Consensus 44 ~~~~C~~----C~k~f~~~~~L~~H~~~H~~ 70 (74)
T 2lce_A 44 KPYRCNI----CGAQFNRPANLKTHTRIHSG 70 (74)
T ss_dssp CSEECTT----TCCEESCHHHHHHHHHHHCC
T ss_pred CCEECCC----CCchhCCHHHHHHHHHhcCC
Confidence 5788886 77665 45789999876443
No 201
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=24.48 E-value=67 Score=19.34 Aligned_cols=27 Identities=15% Similarity=0.415 Sum_probs=18.2
Q ss_pred CcccccCCCCCCCCccccCh-hhHHHHhhh
Q 021988 138 RFRPYNCPYAGSECSVTGDI-PTLVAHLKD 166 (304)
Q Consensus 138 ~~~p~~CP~~g~~C~~~g~~-~~L~~Hl~~ 166 (304)
.-+|+.|+++ .|+..... ..|..|.+.
T Consensus 15 ~~k~~~C~~~--~C~k~F~~~~~L~~H~~~ 42 (47)
T 1ncs_A 15 PDKTFECLFP--GCTKTFKRRYNIRSHIQT 42 (47)
T ss_dssp TTTEEECCCT--TCCCEECSSSSHHHHHHH
T ss_pred CCCCeECCCC--CCCCccCCHHHHHHHHHH
Confidence 3478889743 37776544 678889765
No 202
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.50 E-value=38 Score=23.68 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=20.1
Q ss_pred ccCeecccCcccccCCCCCCccCCC
Q 021988 72 NGHTLCSNCKNRVHNCCPTCRFDLG 96 (304)
Q Consensus 72 ~GH~fC~~C~~~~~~~CP~Cr~~~~ 96 (304)
.|..+|..|..+....|+.|..+|.
T Consensus 2 ~g~~yC~~~y~~~~~~C~~C~~~I~ 26 (81)
T 2dlo_A 2 SSGSSGEGCYVATLEKCATCSQPIL 26 (81)
T ss_dssp CCCCCCCCCCCSSCCBCTTTCCBCC
T ss_pred cCCEECHHHhhcCCCccccCCCeec
Confidence 4778999998755678999988875
No 203
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=23.25 E-value=73 Score=17.52 Aligned_cols=24 Identities=29% Similarity=0.634 Sum_probs=16.8
Q ss_pred ccccCCCCCCCCcccc-ChhhHHHHhhhh
Q 021988 140 RPYNCPYAGSECSVTG-DIPTLVAHLKDD 167 (304)
Q Consensus 140 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~ 167 (304)
+|+.|+. |+... ....|..|.+..
T Consensus 10 k~~~C~~----C~k~f~~~~~l~~H~~~H 34 (37)
T 1p7a_A 10 KPFQCPD----CDRSFSRSDHLALHRKRH 34 (37)
T ss_dssp SSBCCTT----TCCCBSSHHHHHHHHGGG
T ss_pred CCccCCC----CCcccCcHHHHHHHHHHh
Confidence 6788986 76655 347888897653
No 204
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=23.12 E-value=19 Score=29.95 Aligned_cols=44 Identities=11% Similarity=0.227 Sum_probs=32.0
Q ss_pred CCeeeecccccccccccccccccCeecccCcccc-cCCCCCCccC
Q 021988 51 HELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV-HNCCPTCRFD 94 (304)
Q Consensus 51 ~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~-~~~CP~Cr~~ 94 (304)
.+=|.|..|...|..-.+.-..|..+|..|..+. ..+|..|...
T Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~ 76 (192)
T 1b8t_A 32 KSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMG 76 (192)
T ss_dssp TTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCC
T ss_pred CCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccc
Confidence 3557899999998865444456899999998765 4667766543
No 205
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=23.05 E-value=37 Score=28.68 Aligned_cols=38 Identities=18% Similarity=0.467 Sum_probs=24.7
Q ss_pred ccccCCCCeeeecccccccccccccccccCeecccCcc
Q 021988 45 YSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKN 82 (304)
Q Consensus 45 ~~~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~ 82 (304)
...+++...+.||.|...-..-+..=..|-.+|..|-.
T Consensus 13 ~~~~~ln~~~~CPECGs~~t~IV~D~erGE~VCsdCGL 50 (197)
T 3k1f_M 13 RRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGL 50 (197)
T ss_dssp CCSSCCCCCCCCTTTCCSSCCEEEEGGGTEEEETTTCB
T ss_pred ccccccccCeECcCCCCcCCeEEEeCCCCEEEEcCCCC
Confidence 34567778889999997321112222348899999965
No 206
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.04 E-value=50 Score=16.69 Aligned_cols=23 Identities=35% Similarity=0.545 Sum_probs=14.5
Q ss_pred cccCCCCCCCCcccc-ChhhHHHHhhhh
Q 021988 141 PYNCPYAGSECSVTG-DIPTLVAHLKDD 167 (304)
Q Consensus 141 p~~CP~~g~~C~~~g-~~~~L~~Hl~~~ 167 (304)
|+.|+. |+... ....|..|....
T Consensus 2 ~~~C~~----C~~~f~~~~~l~~H~~~h 25 (29)
T 2m0e_A 2 EHKCPH----CDKKFNQVGNLKAHLKIH 25 (29)
T ss_dssp CCCCSS----CCCCCCTTTHHHHHHHHH
T ss_pred CCcCCC----CCcccCCHHHHHHHHHHh
Confidence 567775 65544 346788887643
No 207
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.95 E-value=48 Score=16.89 Aligned_cols=23 Identities=26% Similarity=0.532 Sum_probs=15.2
Q ss_pred ccccCCCCCCCCcccc-ChhhHHHHhhh
Q 021988 140 RPYNCPYAGSECSVTG-DIPTLVAHLKD 166 (304)
Q Consensus 140 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~ 166 (304)
+|+.|+. |+... ....|..|.+.
T Consensus 2 k~~~C~~----C~k~f~~~~~l~~H~~~ 25 (28)
T 2kvf_A 2 RPYSCSV----CGKRFSLKHQMETHYRV 25 (28)
T ss_dssp CSEECSS----SCCEESCHHHHHHHHTT
T ss_pred cCccCCC----CCcccCCHHHHHHHHHh
Confidence 4677875 76654 34788888764
No 208
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.61 E-value=32 Score=24.74 Aligned_cols=10 Identities=30% Similarity=0.936 Sum_probs=5.1
Q ss_pred eecccccccc
Q 021988 55 ECPVCTNLMY 64 (304)
Q Consensus 55 ~CpIC~~~l~ 64 (304)
.|..|.+.+.
T Consensus 17 ~C~~C~~~I~ 26 (91)
T 2d8y_A 17 TCVECQKTVY 26 (91)
T ss_dssp BCTTTCCBCC
T ss_pred cCccCCCccC
Confidence 4555555544
No 209
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.60 E-value=27 Score=24.60 Aligned_cols=31 Identities=16% Similarity=0.513 Sum_probs=16.0
Q ss_pred eeeecccccccccccccccccCeecccCcccc
Q 021988 53 LLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV 84 (304)
Q Consensus 53 ~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~ 84 (304)
-|.|..|...|..-.+ -..|..+|..|..+.
T Consensus 41 CF~C~~C~~~L~~~~f-~~~g~~yC~~cy~~~ 71 (79)
T 2cor_A 41 HFNCANCGKELTADAR-ELKGELYCLPCHDKM 71 (79)
T ss_dssp TSBCSSSCCBCCTTCE-EETTEEECHHHHHTT
T ss_pred CCEeCCCCCccCCCCE-eECCEEeCHHHHHHh
Confidence 3556666665554322 224556666665543
No 210
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.51 E-value=21 Score=24.73 Aligned_cols=33 Identities=9% Similarity=0.191 Sum_probs=21.9
Q ss_pred Ceeeecccccccc-cccccccccCeecccCcccc
Q 021988 52 ELLECPVCTNLMY-PPIHQCPNGHTLCSNCKNRV 84 (304)
Q Consensus 52 ~~l~CpIC~~~l~-~Pi~qC~~GH~fC~~C~~~~ 84 (304)
+-|.|..|...|. ...+.=..|.++|..|..++
T Consensus 30 ~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 30 SCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAA 63 (73)
T ss_dssp TTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHT
T ss_pred CcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHh
Confidence 4477888888887 33232235778888887654
No 211
>1lpv_A Doublesex protein; transcription, drosophila melanogaster, DNA binding, gene regulation,; NMR {Synthetic} SCOP: g.62.1.1
Probab=22.50 E-value=28 Score=23.35 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=18.6
Q ss_pred ccCccchhccccccCcccccCCC
Q 021988 124 IFPYYGKLKHEQHCRFRPYNCPY 146 (304)
Q Consensus 124 ~~~~~~~~~He~~C~~~p~~CP~ 146 (304)
-+....+..|...|+|+.+.|.-
T Consensus 16 HG~~~~lKGHKr~C~~r~C~C~k 38 (52)
T 1lpv_A 16 HGLKITLKGHKRYCKFRYCTCEK 38 (52)
T ss_dssp TTCCCTTTTCGGGCTTTTCCSHH
T ss_pred CCCccccCCccCccCCCCCcCCC
Confidence 34456788999999999999974
No 212
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.36 E-value=19 Score=24.96 Aligned_cols=29 Identities=14% Similarity=0.285 Sum_probs=12.0
Q ss_pred eeecccccccccccccccccCeecccCcc
Q 021988 54 LECPVCTNLMYPPIHQCPNGHTLCSNCKN 82 (304)
Q Consensus 54 l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~ 82 (304)
|.|..|...|..--+.-..|..+|..|..
T Consensus 40 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~ 68 (77)
T 1g47_A 40 FVCAQCFQQFPEGLFYEFEGRKYCEHDFQ 68 (77)
T ss_dssp CCCTTTCCCCGGGCSEEETTEEECHHHHH
T ss_pred CeECCCCCCCCCCCeEeECCeEeCHHHHH
Confidence 44444444444321222234445554443
No 213
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.18 E-value=29 Score=24.16 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=15.8
Q ss_pred eeeecccccccccccccccccCeecccCccc
Q 021988 53 LLECPVCTNLMYPPIHQCPNGHTLCSNCKNR 83 (304)
Q Consensus 53 ~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~ 83 (304)
=|.|..|...|..-.+.-..|..+|..|..+
T Consensus 41 CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~ 71 (80)
T 1x3h_A 41 CFVCGDCFTSFSTGSFFELDGRPFCELHYHH 71 (80)
T ss_dssp TCBCSSSCCBSCSSCCEESSSCEECHHHHHH
T ss_pred cCChhhCCCCCCCCcEEeECCEEECHHHHHH
Confidence 3556666666654222223456666666543
No 214
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=21.78 E-value=56 Score=16.66 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=15.2
Q ss_pred ccccCCCCCCCCcccc-ChhhHHHHhhh
Q 021988 140 RPYNCPYAGSECSVTG-DIPTLVAHLKD 166 (304)
Q Consensus 140 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~ 166 (304)
+|+.|+. |+... ....|..|...
T Consensus 1 k~~~C~~----C~k~f~~~~~l~~H~~~ 24 (29)
T 1rik_A 1 YKFACPE----CPKRFMRSDHLTLHILL 24 (29)
T ss_dssp CCEECSS----SSCEESCSHHHHHHHTG
T ss_pred CCccCCC----CCchhCCHHHHHHHHHH
Confidence 3667875 66654 34688888764
No 215
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=21.03 E-value=30 Score=25.41 Aligned_cols=20 Identities=20% Similarity=0.354 Sum_probs=11.4
Q ss_pred HHhhhccccCCCCCCCCccccCcc
Q 021988 105 KVAESLELPCKYQSLGCHDIFPYY 128 (304)
Q Consensus 105 ~~l~~l~v~C~~~~~GC~~~~~~~ 128 (304)
+.++++.+.||. |++.+--.
T Consensus 45 ~~~e~F~FkCP~----CgEEFyG~ 64 (95)
T 2k5c_A 45 AQVEEFVFKCPV----CGEEFYGK 64 (95)
T ss_dssp HHHHHSEEECTT----TCCEEETT
T ss_pred HHHHHHhhcCCC----ccHHHhcc
Confidence 345566777775 66554333
No 216
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=20.62 E-value=21 Score=33.37 Aligned_cols=33 Identities=24% Similarity=0.667 Sum_probs=0.0
Q ss_pred CCeeeeccccccccccc--cccc-ccCeecccCccc
Q 021988 51 HELLECPVCTNLMYPPI--HQCP-NGHTLCSNCKNR 83 (304)
Q Consensus 51 ~~~l~CpIC~~~l~~Pi--~qC~-~GH~fC~~C~~~ 83 (304)
.+.-.|..|...|..-. ..|. ||++||..|...
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~ 408 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRN 408 (434)
T ss_dssp ------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCC
Confidence 44557999999886332 3453 499999999753
No 217
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.54 E-value=69 Score=17.24 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=17.4
Q ss_pred ccccCCCCCCCCcccc-ChhhHHHHhhhhC
Q 021988 140 RPYNCPYAGSECSVTG-DIPTLVAHLKDDH 168 (304)
Q Consensus 140 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H 168 (304)
+|+.|+. |+... ....|..|.+..+
T Consensus 6 k~~~C~~----C~k~f~~~~~L~~H~~~h~ 31 (35)
T 2elx_A 6 SGYVCAL----CLKKFVSSIRLRSHIREVH 31 (35)
T ss_dssp CSEECSS----SCCEESSHHHHHHHHHHTS
T ss_pred CCeECCC----CcchhCCHHHHHHHHHHHc
Confidence 5778876 76655 4478899987544
No 218
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.12 E-value=65 Score=22.29 Aligned_cols=36 Identities=14% Similarity=0.423 Sum_probs=23.1
Q ss_pred eeeecc--ccccccccccccc-ccCeecccCcccccCCCC
Q 021988 53 LLECPV--CTNLMYPPIHQCP-NGHTLCSNCKNRVHNCCP 89 (304)
Q Consensus 53 ~l~CpI--C~~~l~~Pi~qC~-~GH~fC~~C~~~~~~~CP 89 (304)
.-.|+. |...-..| +.|. ||..||..=...-...|+
T Consensus 12 ~~~Cs~~~Ck~~~ll~-f~C~~C~~~FC~~HR~~e~H~C~ 50 (63)
T 1x4v_A 12 TNKCERAGCRQREMMK-LTCERCSRNFCIKHRHPLDHDCS 50 (63)
T ss_dssp CCCCCSTTCCCCCSSC-CBCSSSCCBCCHHHHSTTSSCCC
T ss_pred CCCCCccCCCCCCccc-eECCCCCcccCcccCCccCCcCC
Confidence 346888 99875556 6887 788998753332234454
Done!