BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021989
(304 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FLI|A Chain A, Human Metap1 With Bengamide Analog Y16, In Mn Form
pdb|4FLJ|A Chain A, Human Metap1 With Bengamide Analog Y08, In Mn Form
pdb|4FLK|A Chain A, Human Metap1 With Bengamide Analog Y10, In Mn Form
pdb|4FLL|A Chain A, Human Metap1 With Bengamide Analog Yz6, In Mn Form
Length = 326
Score = 211 bits (536), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 110/233 (47%), Positives = 138/233 (59%), Gaps = 12/233 (5%)
Query: 79 TTKFRKRPPLRRGRVSPRLPVPDHIPKPPYVS-----STSLPDLSPEYQIH--DSESIAK 131
T K R PL P PVP +I +P Y S S L QI SE I
Sbjct: 5 TGKLRPHYPLM-----PTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEG 59
Query: 132 MRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVN 191
MR C LA VLD A +++P VTT EID AVH I YPSPL Y FPKS CTSVN
Sbjct: 60 MRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVN 119
Query: 192 ECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEK 251
E +CHGIPD R LQ+GDI+N+D+T+Y NGYHGD ++TF G V DG ++LV+ T ECL +
Sbjct: 120 EVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQ 179
Query: 252 GIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYHNRK 304
I K G ++++G I +HA+ GF VV + GHG+ K+FH+ P + H K
Sbjct: 180 AIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAK 232
>pdb|2B3H|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I With A Third Cobalt In The Active Site
pdb|2B3K|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I In The Holo Form
pdb|2B3L|A Chain A, Crystal Structure Of Type I Human Methionine
Aminopeptidase In The Apo Form
pdb|2GZ5|A Chain A, Human Type 1 Methionine Aminopeptidase In Complex With
Ovalicin At 1.1 Ang
pdb|2NQ6|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
1 In Complex With
3-Tert-Butoxycarbonylaminopyridine-2-Carboxylic Acid
Thiazole-2- Ylamide
pdb|2NQ7|A Chain A, Crystal Structure Of Type 1 Human Methionine
Aminopeptidase In Complex With
3-(2,2-Dimethylpropionylamino)pyridine-2-Carboxylic Acid
Thiazole-2-Ylamide
Length = 329
Score = 210 bits (535), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 111/239 (46%), Positives = 140/239 (58%), Gaps = 12/239 (5%)
Query: 73 ERELQTTTKFRKRPPLRRGRVSPRLPVPDHIPKPPYVS-----STSLPDLSPEYQIH--D 125
E + T K R PL P PVP +I +P Y S S L QI
Sbjct: 23 EDPYRYTGKLRPHYPLM-----PTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLS 77
Query: 126 SESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKS 185
SE I MR C LA VLD A +++P VTT EID AVH I YPSPL Y FPKS
Sbjct: 78 SEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKS 137
Query: 186 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVT 245
CTSVNE +CHGIPD R LQ+GDI+N+D+T+Y NGYHGD ++TF G V DG ++LV+ T
Sbjct: 138 CCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTT 197
Query: 246 EECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYHNRK 304
ECL + I K G ++++G I +HA+ GF VV + GHG+ K+FH+ P + H K
Sbjct: 198 YECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAK 256
>pdb|2G6P|A Chain A, Crystal Structure Of Truncated (Delta 1-89) Human
Methionine Aminopeptidase Type 1 In Complex With Pyridyl
Pyrimidine Derivative
Length = 304
Score = 210 bits (534), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 110/233 (47%), Positives = 138/233 (59%), Gaps = 12/233 (5%)
Query: 79 TTKFRKRPPLRRGRVSPRLPVPDHIPKPPYVS-----STSLPDLSPEYQIH--DSESIAK 131
T K R PL P PVP +I +P Y S S L QI SE I
Sbjct: 4 TGKLRPHYPLM-----PTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEG 58
Query: 132 MRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVN 191
MR C LA VLD A +++P VTT EID AVH I YPSPL Y FPKS CTSVN
Sbjct: 59 MRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVN 118
Query: 192 ECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEK 251
E +CHGIPD R LQ+GDI+N+D+T+Y NGYHGD ++TF G V DG ++LV+ T ECL +
Sbjct: 119 EVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQ 178
Query: 252 GIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYHNRK 304
I K G ++++G I +HA+ GF VV + GHG+ K+FH+ P + H K
Sbjct: 179 AIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAK 231
>pdb|4FUK|A Chain A, Aminopeptidase From Trypanosoma Brucei
pdb|4FUK|B Chain B, Aminopeptidase From Trypanosoma Brucei
Length = 337
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 143/236 (60%), Gaps = 16/236 (6%)
Query: 82 FRKRPPLRRGRVSPRLPVPDHIPKPPY------VSSTSLPDLSPEYQIHD---------- 125
F PLR G+++PR VP HI +P Y VS++ D + ++++
Sbjct: 6 FDFTGPLRPGKITPRRAVPSHILRPDYADRAGGVSASEEKDRGSKVKVYNIQFLHDDSKK 65
Query: 126 SESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKS 185
+ I +++ C+L+ VLD A +P +TT+E+D+ VH+ +E YPSPL Y GFPKS
Sbjct: 66 TAEIQRIKTVCQLSREVLDIATAAAKPGITTDELDRIVHEATVERNMYPSPLNYYGFPKS 125
Query: 186 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVT 245
VCTSVNE +CHGIPDSR+L++GDI+NIDV+ YLNG+HGD ++T G D RLV
Sbjct: 126 VCTSVNEVICHGIPDSRELEEGDILNIDVSSYLNGFHGDLNETVFIGRPDDDSVRLVHAA 185
Query: 246 EECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH 301
ECL GI V K A +K++G I A +Y VV + GHGVG +FH+ P + H
Sbjct: 186 YECLCAGIGVVKPEALYKQVGDAIEACASQYQCSVVRTYTGHGVGHLFHTSPTVCH 241
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn
Inhibitor A02
pdb|3IU8|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T03
pdb|3IU9|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T07
Length = 288
Score = 203 bits (517), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 101/218 (46%), Positives = 135/218 (61%), Gaps = 1/218 (0%)
Query: 84 KRPPLRRGRVSPRLPVPDHIPKPPYVSSTSLPDLSPEYQIHDSESIAKMRAACELAARVL 143
R L G +SP PVP+ I +P YV + + S E + E I KMR A +AA L
Sbjct: 6 SRTALSPGVLSPTRPVPNWIARPEYVGKPAAQEGS-EPWVQTPEVIEKMRVAGRIAAGAL 64
Query: 144 DAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQ 203
AGK V P VTT+E+D+ H+ +++ GAYPS LGY GFPKS CTS+NE +CHGIPDS
Sbjct: 65 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTV 124
Query: 204 LQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIAVCKDGASFK 263
+ DGDI+NIDVT Y+ G HGDT+ TF G+V+D + LV T E + I K G +
Sbjct: 125 ITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALS 184
Query: 264 KIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH 301
IG+ I +A ++G+ VV F GHG+G FH+ ++ H
Sbjct: 185 VIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLH 222
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine
Aminopeptidase Suggests A Mode Of Interaction With The
Ribosome
pdb|1YJ3|A Chain A, Crystal Structure Analysis Of Product Bound Methionine
Aminopeptidase Type 1c From Mycobacterium Tuberculosis
Length = 291
Score = 203 bits (517), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 101/218 (46%), Positives = 135/218 (61%), Gaps = 1/218 (0%)
Query: 84 KRPPLRRGRVSPRLPVPDHIPKPPYVSSTSLPDLSPEYQIHDSESIAKMRAACELAARVL 143
R L G +SP PVP+ I +P YV + + S E + E I KMR A +AA L
Sbjct: 9 SRTALSPGVLSPTRPVPNWIARPEYVGKPAAQEGS-EPWVQTPEVIEKMRVAGRIAAGAL 67
Query: 144 DAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQ 203
AGK V P VTT+E+D+ H+ +++ GAYPS LGY GFPKS CTS+NE +CHGIPDS
Sbjct: 68 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTV 127
Query: 204 LQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIAVCKDGASFK 263
+ DGDI+NIDVT Y+ G HGDT+ TF G+V+D + LV T E + I K G +
Sbjct: 128 ITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALS 187
Query: 264 KIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH 301
IG+ I +A ++G+ VV F GHG+G FH+ ++ H
Sbjct: 188 VIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLH 225
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn
Form
pdb|3PKB|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y16, In Mn
Form
pdb|3PKC|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y08, In Mn
Form
pdb|3PKD|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Mn
Form
pdb|3PKE|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Ni
Form
Length = 285
Score = 203 bits (517), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 101/218 (46%), Positives = 135/218 (61%), Gaps = 1/218 (0%)
Query: 84 KRPPLRRGRVSPRLPVPDHIPKPPYVSSTSLPDLSPEYQIHDSESIAKMRAACELAARVL 143
R L G +SP PVP+ I +P YV + + S E + E I KMR A +AA L
Sbjct: 3 SRTALSPGVLSPTRPVPNWIARPEYVGKPAAQEGS-EPWVQTPEVIEKMRVAGRIAAGAL 61
Query: 144 DAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQ 203
AGK V P VTT+E+D+ H+ +++ GAYPS LGY GFPKS CTS+NE +CHGIPDS
Sbjct: 62 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTV 121
Query: 204 LQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIAVCKDGASFK 263
+ DGDI+NIDVT Y+ G HGDT+ TF G+V+D + LV T E + I K G +
Sbjct: 122 ITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALS 181
Query: 264 KIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH 301
IG+ I +A ++G+ VV F GHG+G FH+ ++ H
Sbjct: 182 VIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLH 219
>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium
Tuberculosis Methionine Aminopeptidase
Length = 291
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/218 (45%), Positives = 134/218 (61%), Gaps = 1/218 (0%)
Query: 84 KRPPLRRGRVSPRLPVPDHIPKPPYVSSTSLPDLSPEYQIHDSESIAKMRAACELAARVL 143
R L G +SP PVP+ I +P YV + + S E + E I KMR A +AA L
Sbjct: 9 SRTALSPGVLSPTRPVPNWIARPEYVGKPAAQEGS-EPWVQTPEVIEKMRVAGRIAAGAL 67
Query: 144 DAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQ 203
AGK V P VTT+E+D+ H+ +++ GAYPS LGY GFPKS TS+NE +CHGIPDS
Sbjct: 68 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCSTSLNEVICHGIPDSTV 127
Query: 204 LQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIAVCKDGASFK 263
+ DGDI+NIDVT Y+ G HGDT+ TF G+V+D + LV T E + I K G +
Sbjct: 128 ITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALS 187
Query: 264 KIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH 301
IG+ I +A ++G+ VV F GHG+G FH+ ++ H
Sbjct: 188 VIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLH 225
>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From
Plasmodium Falciparum, Pf10_0150
Length = 368
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 141/241 (58%), Gaps = 10/241 (4%)
Query: 73 ERELQTTTKFRKRPPLRRGRVSPRLPVPDHIPKPPYVSSTSLPDLSPEYQ------IHDS 126
+ L+ F+ +R +S VP HI +P Y S S+P+ Y+ +++
Sbjct: 48 DDHLKNFVNFKFTGDVRPWPLSKINHVPSHIERPDYAIS-SIPESELIYKRKSDIYVNNE 106
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSV 186
E I ++R AC L + LD A LV P VTT+EID+ VH+ II+ AYPS L Y FPKS
Sbjct: 107 EEIQRIREACILGRKTLDYAHTLVSPGVTTDEIDRKVHEFIIKNNAYPSTLNYYKFPKSC 166
Query: 187 CTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTE 246
CTSVNE +CHGIPD R L+ GDIINID++V+ G H D ++T+ G+++D K ++ E
Sbjct: 167 CTSVNEIVCHGIPDYRPLKSGDIINIDISVFYKGVHSDLNETYFVGDINDVPKEGKELVE 226
Query: 247 EC---LEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYHNR 303
C L + I CK G +K IG I + K F VV + GHGVGK+FHS P + H +
Sbjct: 227 TCYFSLMEAIKKCKPGMFYKNIGTLIDAYVSKKNFSVVRSYSGHGVGKLFHSNPTVPHFK 286
Query: 304 K 304
K
Sbjct: 287 K 287
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 184 bits (468), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 120/178 (67%)
Query: 122 QIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGG 181
+IH + KMRAA +LAA LD V+P+VTTN ++ H I A P+PL Y G
Sbjct: 7 KIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKG 66
Query: 182 FPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRL 241
FPKS+CTS+N +CHGIP+ + L++GDI+NIDVTV L+G++GDTS+ + G+V+ KRL
Sbjct: 67 FPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRL 126
Query: 242 VKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPII 299
++VT + + KGI V + GA IG I +AEK+ + VV + GHG+G+VFH +P I
Sbjct: 127 IQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSI 184
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 184 bits (466), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 120/178 (67%)
Query: 122 QIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGG 181
+IH + KMRAA +LAA LD V+P+VTTN ++ H I A P+PL Y G
Sbjct: 7 KIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKG 66
Query: 182 FPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRL 241
FPKS+CTS+N +CHGIP+ + L++GDI+NIDVTV L+G++GDTS+ + G+V+ KRL
Sbjct: 67 FPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRL 126
Query: 242 VKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPII 299
++VT + + KGI V + GA IG I +AEK+ + VV + GHG+G+VFH +P I
Sbjct: 127 IQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSI 184
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant
Length = 278
Score = 161 bits (407), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 115/177 (64%), Gaps = 2/177 (1%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 185
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 9 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 68
Query: 186 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 69 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 128
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH 301
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP + H
Sbjct: 129 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLH 185
>pdb|2GG0|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG2|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG3|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG5|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG7|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG8|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG9|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGB|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGC|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2Q93|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B21
pdb|2Q95|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A05
pdb|2Q96|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A18
Length = 263
Score = 161 bits (407), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 115/177 (64%), Gaps = 2/177 (1%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 185
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 8 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 67
Query: 186 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 68 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 127
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH 301
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP + H
Sbjct: 128 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLH 184
>pdb|1XNZ|A Chain A, Crystal Structure Of Mn(Ii) Form Of E. Coli. Methionine
Aminopeptidase In Complex With
5-(2-Chlorophenyl)furan-2- Carboxylic Acid
pdb|2BB7|A Chain A, Mn Form Of E. Coli Methionine Aminopeptidase In Complex
With A Quinolinyl Sulfonamide Inhibitor
pdb|2EVC|A Chain A, Crystal Structure Of E. Coli. Methionine Amino Peptidase
In Complex With 5-(2-(trifluoromethyl)phenyl)furan-2-
Carboxylic Acid
pdb|2EVM|A Chain A, Crystal Structure Of Methionine Aminopeptidase In Complex
With 5-(2,5-Dichlorophenyl)furan-2-Carboxylic Acid
pdb|2EVO|A Chain A, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|2EVO|B Chain B, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|1MAT|A Chain A, Structure Of The Cobalt-Dependent Methionine
Aminopeptidase From Escherichia Coli: A New Type Of
Proteolytic Enzyme
Length = 264
Score = 161 bits (407), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 115/177 (64%), Gaps = 2/177 (1%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 185
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 9 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 68
Query: 186 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 69 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 128
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH 301
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP + H
Sbjct: 129 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLH 185
>pdb|2GU4|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU4|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU5|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU5|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU6|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU6|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU7|A Chain A, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
pdb|2GU7|B Chain B, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
Length = 263
Score = 161 bits (407), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 115/177 (64%), Gaps = 2/177 (1%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 185
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 8 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 67
Query: 186 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 68 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 127
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH 301
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP + H
Sbjct: 128 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLH 184
>pdb|2GTX|A Chain A, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|2GTX|B Chain B, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|3D27|A Chain A, E. Coli Methionine Aminopeptidase With Fe Inhibitor W29
Length = 261
Score = 161 bits (407), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 115/177 (64%), Gaps = 2/177 (1%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 185
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 6 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 65
Query: 186 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 66 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 125
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH 301
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP + H
Sbjct: 126 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLH 182
>pdb|4A6V|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
pdb|4A6V|B Chain B, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 265
Score = 161 bits (407), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 115/177 (64%), Gaps = 2/177 (1%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 185
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 9 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 68
Query: 186 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 69 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 128
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH 301
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP + H
Sbjct: 129 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLH 185
>pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate
Complex
pdb|1C21|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Complex
pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trifluoromethionine
Complex
pdb|1C23|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphonate
Complex
pdb|1C24|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphinate
Complex
Length = 263
Score = 161 bits (407), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 115/177 (64%), Gaps = 2/177 (1%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 185
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 8 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 67
Query: 186 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 68 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 127
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH 301
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP + H
Sbjct: 128 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLH 184
>pdb|2P98|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye7
pdb|2P9A|A Chain A, E. Coli Methionine Aminopeptidase Dimetalated With
Inhibitor Ye6
pdb|2Q92|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B23
pdb|2Q94|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A04
Length = 262
Score = 161 bits (407), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 115/177 (64%), Gaps = 2/177 (1%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 185
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 8 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 67
Query: 186 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 68 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 127
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH 301
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP + H
Sbjct: 128 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLH 184
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom
Resolution
pdb|1YVM|A Chain A, E. Coli Methionine Aminopeptidase In Complex With
Thiabendazole
pdb|4A6W|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 264
Score = 161 bits (407), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 115/177 (64%), Gaps = 2/177 (1%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 185
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 9 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 68
Query: 186 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 69 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 128
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH 301
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP + H
Sbjct: 129 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLH 185
>pdb|2P99|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye6
Length = 261
Score = 160 bits (406), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 115/177 (64%), Gaps = 2/177 (1%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 185
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 8 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 67
Query: 186 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 68 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 127
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH 301
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP + H
Sbjct: 128 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLH 184
>pdb|3MAT|A Chain A, E.coli Methionine Aminopeptidase Transition-state
Inhibitor Complex
Length = 265
Score = 160 bits (406), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 115/177 (64%), Gaps = 2/177 (1%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMII-EAGAYPSPLGYGGFPKS 185
E I KMR A LAA VL+ V+P V+T E+D+ + I+ E A + LGY G+PKS
Sbjct: 9 EDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKS 68
Query: 186 VCTSVNECMCHGIPD-SRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
VC S+NE +CHGIPD ++ L+DGDI+NIDVTV +G+HGDTSK F+ G + +RL ++
Sbjct: 69 VCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRI 128
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH 301
T+E L + + K G + ++IG I + E GF VV + GHG+G+ FH EP + H
Sbjct: 129 TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLH 185
>pdb|3TAV|A Chain A, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
pdb|3TAV|B Chain B, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
Length = 286
Score = 121 bits (303), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 96/175 (54%), Gaps = 7/175 (4%)
Query: 132 MRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSVN 191
M AA + L A + V+T E+D+ +I EAGA PS LGY GFP S+C+SVN
Sbjct: 43 MAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFLGYHGFPASICSSVN 102
Query: 192 ECMCHGIPDSRQ-LQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLE 250
+ + HGIP + L DGD+++ID L+G+HGD++ TF G V + L + T +E
Sbjct: 103 DQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGTVIPSDEALSEATRLSME 162
Query: 251 KGIAVCKDGASFK------KIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPII 299
GIA G ++G R +E FG+V+ + GHG+G+ H +P +
Sbjct: 163 AGIAAMIPGNRLTDVSHAIELGTRAAEKQFDRAFGIVDGYGGHGIGRSMHLDPFL 217
>pdb|3TB5|A Chain A, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|B Chain B, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|C Chain C, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
Length = 264
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%)
Query: 129 IAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCT 188
I M + EL A V ++P +T+ +I+ V I G + +GY G+ + C
Sbjct: 10 IEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGYEGYKYATCC 69
Query: 189 SVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEEC 248
S+N+ +CHG P + L+DGD+I +D+ V L G D+ +++ G + + RL++VT++
Sbjct: 70 SINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEIDRLMEVTKKA 129
Query: 249 LEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPIIYH 301
L GI + G IG I + E G+GVV FVGHG+G H P+I H
Sbjct: 130 LYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGVVRDFVGHGIGPTIHESPMIPH 182
>pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With
An Aminoketone Inhibitor 54135.
pdb|1QXY|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle 618
pdb|1QXZ|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle Inhibitor 119
Length = 252
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 87/172 (50%), Gaps = 1/172 (0%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSV 186
E + ++ + A+V + +P +TT E+D ++ E GA +P+ FP
Sbjct: 7 EELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENFPGQT 66
Query: 187 CTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLV-KVT 245
C SVNE + HGIP R +++GD++NIDV+ NGY+ DT +F+ G D +K+ V V
Sbjct: 67 CISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVA 126
Query: 246 EECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEP 297
E IA K G IGK + A + V++ GHGVG H P
Sbjct: 127 TMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAP 178
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 95/179 (53%), Gaps = 1/179 (0%)
Query: 122 QIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGG 181
+I I KM+ A + A L K++ P T +++ V ++ + P+ GYGG
Sbjct: 15 RIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGG 74
Query: 182 FPKSVCTSVNECMCHGIP-DSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKR 240
+ + C SVNE + HG+P + ++GDI+++DV G +GD + T++ G + K
Sbjct: 75 YKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKE 134
Query: 241 LVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGKVFHSEPII 299
LV+VT E LEK I + K G + I E E GF V+ +VGHGVG+ H +P I
Sbjct: 135 LVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHEDPQI 193
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGS|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1WKM|A Chain A, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1WKM|B Chain B, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1XGO|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
Length = 295
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 14/162 (8%)
Query: 131 KMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSV 190
K+ A E+A +V + A KL RP + E+ +++ +MI+E G P+ FP V S+
Sbjct: 5 KLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FP--VNLSI 56
Query: 191 NECMCHGIP---DSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEE 247
NE H P D+ L++GD + IDV V+++G+ DT+ T G D L++ +E
Sbjct: 57 NEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEED---ELMEAAKE 113
Query: 248 CLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGV 289
L I+V + G K++GK I K GF + GH +
Sbjct: 114 ALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKI 155
>pdb|2DFI|A Chain A, Crystal Structure Of Pf-Map(1-292)-C
pdb|2DFI|B Chain B, Crystal Structure Of Pf-Map(1-292)-C
Length = 301
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 14/162 (8%)
Query: 131 KMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPKSVCTSV 190
K+ A E+A +V + A KL RP + E+ +++ +MI+E G P+ FP V S+
Sbjct: 5 KLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FP--VNLSI 56
Query: 191 NECMCHGIP---DSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEE 247
NE H P D+ L++GD + IDV V+++G+ DT+ T G D L++ +E
Sbjct: 57 NEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEED---ELMEAAKE 113
Query: 248 CLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGV 289
L I+V + G K++GK I K GF + GH +
Sbjct: 114 ALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKI 155
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 11/176 (6%)
Query: 125 DSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGFPK 184
DSE I ++ A ++A + +RP V+ E+ + + + GA S F
Sbjct: 133 DSE-IKILKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGATSSS-----FDI 186
Query: 185 SVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKV 244
V + + + HG+ + ++ GD + +D Y GY D ++T G SD LK + +
Sbjct: 187 IVASGLRSALPHGVASEKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKLKEIYNI 246
Query: 245 TEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERF---VGHGVGKVFHSEP 297
E +G+ K G + ++ ++ + G+G E F GHG+G H P
Sbjct: 247 VLEAQLRGVNGIKAGLTGREADALTRDYITEKGYG--EYFGHSTGHGIGLEIHEAP 300
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 85/180 (47%), Gaps = 10/180 (5%)
Query: 123 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGF 182
I E I + ACE+A + + AA + + E+ V ++ GA P F
Sbjct: 124 IKTKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGA-EKP----AF 178
Query: 183 PKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLV 242
+ + + HG+ ++++ GD++ ID+ N Y+ D ++T + G+ ++ + +
Sbjct: 179 DTIIASGHRSALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIY 238
Query: 243 KVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFV---GHGVGKVFHSEPII 299
++ E ++ + K G + K++ E ++YG+G + F+ GHGVG H P I
Sbjct: 239 EIVLEAQKRAVEAAKPGMTAKELDSIAREIIKEYGYG--DYFIHSLGHGVGLEIHEWPRI 296
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 13/182 (7%)
Query: 122 QIHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYG- 180
I D E + M A +A +V + +T + I ++ ++ L G
Sbjct: 130 MIKDKEEVKMMEHASRIADKVFEEI-------LTWDLIGMKERELALKIELLIRELSDGI 182
Query: 181 GFPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKR 240
F V + N H P R+++ GDII +D GY D ++T G + + L +
Sbjct: 183 AFEPIVASGENAANPHHEPGERKIRKGDIIILDYGARWKGYCSDITRTIGLGELDERLVK 242
Query: 241 LVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFV---GHGVGKVFHSEP 297
+ +V ++ E ++G K + R E K G+G E F+ GHG+G H EP
Sbjct: 243 IYEVVKDAQESAFKAVREGIKAKDVDSRAREVISKAGYG--EYFIHRTGHGLGLDVHEEP 300
Query: 298 II 299
I
Sbjct: 301 YI 302
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 81/178 (45%), Gaps = 10/178 (5%)
Query: 123 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGF 182
I + I + ACE+A + + AA + + E+ V ++ GA P F
Sbjct: 127 IKSEKEIKIIEKACEIADKAVMAAIEEITEGKKEREVAAKVEYLMKMNGA-EKP----AF 181
Query: 183 PKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLV 242
+ + + HG+ ++++ GD++ ID+ Y+ D ++T + G+ ++ K +
Sbjct: 182 DTIIASGYRSALPHGVASDKRIERGDLVVIDLGALYQHYNSDITRTIVVGSPNEKQKEIY 241
Query: 243 KVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERF---VGHGVGKVFHSEP 297
++ E +K + K G + K++ +YG+G E F +GHGVG H P
Sbjct: 242 EIVLEAQKKAVESAKPGITAKELDSIARNIIAEYGYG--EYFNHSLGHGVGLEVHEWP 297
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 185
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 186 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 244
V + N C+ H + +++DGD++ ID GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 245 TEECLEKGIAVCKDGASFKKI 265
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 185
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 186 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 244
V + N C+ H + +++DGD++ ID GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 245 TEECLEKGIAVCKDGASFKKI 265
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 185
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 186 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 244
V + N C+ H + +++DGD++ ID GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 245 TEECLEKGIAVCKDGASFKKI 265
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 185
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 186 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 244
V + N C+ H + +++DGD++ ID GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 245 TEECLEKGIAVCKDGASFKKI 265
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 185
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 186 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 244
V + N C+ H + +++DGD++ ID GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 245 TEECLEKGIAVCKDGASFKKI 265
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 185
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 186 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 244
V + N C+ H + +++DGD++ ID GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 245 TEECLEKGIAVCKDGASFKKI 265
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 185
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 186 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 244
V + N C+ H + +++DGD++ ID GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 245 TEECLEKGIAVCKDGASFKKI 265
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 10/180 (5%)
Query: 123 IHDSESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGAYPSPLGYGGF 182
+ D I K++ A E++ R + +R +T EI + + + GA F
Sbjct: 133 VKDEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAALLEYTMRKEGAEGVA-----F 187
Query: 183 PKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLV 242
V + + HG + ++ GD+I ID Y D ++ G SD +K +
Sbjct: 188 DTIVASGCRSALPHGKASDKVVERGDVIVIDFGATYENYCADITRVVSIGEPSDEVKEVH 247
Query: 243 KVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERF---VGHGVGKVFHSEPII 299
+ E E+ + + K G + K + E + G+G E F +GHG+G H P I
Sbjct: 248 SIVLEAQERALKIAKAGVTGKLLDSVAREFIREKGYG--EFFGHSLGHGIGLEVHEGPAI 305
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 185
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 186 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 244
V + N C+ + +++DGD++ ID GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILAYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 245 TEECLEKGIAVCKDGASFKKI 265
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 185
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 186 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 244
V + N C+ H + +++DGD++ I GY GD ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENECEMRDGDLVLIAAGCEYKGYAGDITRTFPVNGKFTQAQREIYDI 292
Query: 245 TEECLEKGIAVCKDGASFKKI 265
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 185
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 186 VCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVKV 244
V + N C+ H + +++DGD++ ID GY G ++TF + G + + + +
Sbjct: 233 VGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGAITRTFPVNGKFTQAQREIYDI 292
Query: 245 TEECLEKGIAVCKDGASFKKI 265
E LE + + + G S ++
Sbjct: 293 VLESLETSLRLYRPGTSILEV 313
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 127 ESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAGA-YPSPLGYGGFPKS 185
E IA +R A E+ A A + RP + ++ +H GA YPS +
Sbjct: 179 EEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTI 232
Query: 186 VCTSVNECMCHGIPDS-RQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGNVSDGLKRLVK 243
V + N C+ H + +++DGD++ ID GY GD ++TF + G + + +
Sbjct: 233 VGSGENGCILHYTENECXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYD 292
Query: 244 VTEECLEKGIAVCKDGASFKKI 265
+ E LE + + + G S ++
Sbjct: 293 IVLESLETSLRLYRPGTSILEV 314
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
Length = 377
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 82/191 (42%), Gaps = 15/191 (7%)
Query: 115 PDLSPEYQIHDSESIAKMRAACELAARVLD--AAGKLVRPSVTTNEIDKAVHQMII-EAG 171
P +S +I D + I + A E+ +V GKL S E+ + MI E G
Sbjct: 142 PVISELREIKDKDEIKAHKKAAEIVDKVFYRFIEGKLEGKS--ERELANRIEYMIKNEFG 199
Query: 172 AYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLC 231
A F V + N H P R+++ GD++ D GY D ++T +
Sbjct: 200 ADDV-----SFEPIVASGPNGANPHHRPSHRKIRKGDVVIFDYGAKYLGYCSDVTRTVVV 254
Query: 232 GNVSDGLKRLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFV---GHG 288
G S+ +K++ ++ +E E + +G + + KYG+G E F+ GHG
Sbjct: 255 GPPSEEVKKVYEIVKEAQETAVQKVAEGIPAEVVDATARGIISKYGYG--EYFIHRTGHG 312
Query: 289 VGKVFHSEPII 299
+G H EP I
Sbjct: 313 LGIDVHEEPYI 323
>pdb|2V6C|A Chain A, Crystal Structure Of Erbb3 Binding Protein 1 (Ebp1)
Length = 353
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 14/133 (10%)
Query: 181 GFPKSVCTSVNECMCHGIP-DSRQ---LQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSD 236
FP S+ SVN C+CH P S Q L++GD++ ID+ V+++G+ + + TF+ G V+
Sbjct: 68 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVIG-VAQ 124
Query: 237 GLK------RLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVG 290
G + ++K C E + + K G ++ + ++ A + +E + H +
Sbjct: 125 GTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLK 184
Query: 291 K-VFHSEPIIYHN 302
+ V E I N
Sbjct: 185 QHVIDGEKTIIQN 197
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 394
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 14/133 (10%)
Query: 181 GFPKSVCTSVNECMCHGIP-DSRQ---LQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSD 236
FP S+ SVN C+CH P S Q L++GD++ ID+ V+++G+ + + TF+ +V+
Sbjct: 75 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVV-DVAQ 131
Query: 237 GLK------RLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVG 290
G + ++K C E + + K G ++ + ++ A + +E + H +
Sbjct: 132 GTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLK 191
Query: 291 K-VFHSEPIIYHN 302
+ V E I N
Sbjct: 192 QHVIDGEKTIIQN 204
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1
Length = 401
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 14/133 (10%)
Query: 181 GFPKSVCTSVNECMCHGIP-DSRQ---LQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSD 236
FP S+ SVN C+CH P S Q L++GD++ ID+ V+++G+ + + TF+ +V+
Sbjct: 82 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVV-DVAQ 138
Query: 237 GLK------RLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVG 290
G + ++K C E + + K G ++ + ++ A + +E + H +
Sbjct: 139 GTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLK 198
Query: 291 K-VFHSEPIIYHN 302
+ V E I N
Sbjct: 199 QHVIDGEKTIIQN 211
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 196 HGIPDSRQLQDGDIINIDVT-VYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEECLEKGIA 254
HG D R+LQ GDI+ +D+ Y GY+ D+++T+ G+ S + + + +
Sbjct: 218 HGYSD-RKLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQQYSALQRAQRAAVD 276
Query: 255 VCKDGASFKKIGKRISEHAEKYGFGVVERFV---GHGVGKVFHSEPII 299
+ G + ++ + G E FV GHG+G H EP I
Sbjct: 277 AVRPGVTAAQVDAAARDVLADAGLA--EYFVHRTGHGIGLCVHEEPYI 322
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 116 DLSPEYQIHD-SESIAKMRAACELAARVLDAAGKLVRPSVTTNEIDKAVHQMIIEAG 171
D + Y I D S +A+ +A + A R AA VRP VT ++D A ++ +AG
Sbjct: 246 DSTRTYSIGDPSPDVAQQYSALQRAQR---AAVDAVRPGVTAAQVDAAARDVLADAG 299
>pdb|1CHM|B Chain B, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 188 TSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEE 247
+ +N H +R++ GDI++++ + GY+ +T + SD RL +V E
Sbjct: 223 SGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVE 282
Query: 248 CLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERF-VGHGVGKVFH 294
E G+ + K GA I + ++E K+ F GH G + H
Sbjct: 283 VHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSH 330
>pdb|1CHM|A Chain A, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 188 TSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEE 247
+ +N H +R++ GDI++++ + GY+ +T + SD RL +V E
Sbjct: 223 SGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVE 282
Query: 248 CLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERF-VGHGVGKVFH 294
E G+ + K GA I + ++E K+ F GH G + H
Sbjct: 283 VHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSH 330
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|B Chain B, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|C Chain C, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|D Chain D, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|E Chain E, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|F Chain F, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
Length = 427
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 175 SPLGYGGFPKSVCTSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTF-LCGN 233
S + + F + + N + H + Q+Q+GD++ +D+ + Y+ D S TF G
Sbjct: 218 SGIKHHAFNTILASGKNATVLHYEDNDAQIQNGDLVLLDLGAQKDYYNADISYTFPANGT 277
Query: 234 VSDGLKRLVKVTEECLEKGIAVCKDGASFKKIGKRISEHAEK 275
S K++ + L++ + K G F ++EHA+K
Sbjct: 278 FSSRQKQIYNIVLNALKETTEIIKPGLKFAA----LNEHAKK 315
>pdb|1KP0|A Chain A, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
pdb|1KP0|B Chain B, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
Length = 402
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 1/108 (0%)
Query: 188 TSVNECMCHGIPDSRQLQDGDIINIDVTVYLNGYHGDTSKTFLCGNVSDGLKRLVKVTEE 247
+ +N H R + GDI++++ + GY+ +T V D +
Sbjct: 223 SGINTDGAHNPVTXRVVXRGDILSLNCFPMIFGYYTALERTLFLXXVXDASLXIWXKNTA 282
Query: 248 CLEKGIAVCKDGASFKKIGKRISEHAEKYGFGVVERF-VGHGVGKVFH 294
+G+ + K GA K I ++ + F GH G + H
Sbjct: 283 VHRRGLXLIKPGARCKDIASELNXMYRXWDLLRYRTFGYGHSFGVLXH 330
>pdb|3VTI|C Chain C, Crystal Structure Of Hype-Hypf Complex
pdb|3VTI|D Chain D, Crystal Structure Of Hype-Hypf Complex
Length = 314
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 16/92 (17%)
Query: 202 RQLQDGDIINIDVTVYLNGYH--------GDTSKTFLCGNVSD----GLKRLVKVTEECL 249
R ++D ++ ++T+ + + GD K +CG V+D G K L +
Sbjct: 18 RAMEDAALLFGNITLTTDSFTVKPLFFPGGDIGKLAVCGTVNDASMRGAKPLFLTAAFII 77
Query: 250 EKGIAVCKDGASFKKIGKRISEHAEKYGFGVV 281
E+G V KKI K ++E A++ G +V
Sbjct: 78 EEGFPV----EDLKKIVKSMAEAAKEAGVKIV 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,701,872
Number of Sequences: 62578
Number of extensions: 352662
Number of successful extensions: 1078
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 952
Number of HSP's gapped (non-prelim): 61
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)