Citrus Sinensis ID: 021991

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300----
Protein Sequence
MAPGGSACKEVVESDHTVINYDIKAESNTALTKTSFGLGGKQGIYSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKVAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLRITGRIWKEE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccEEEcccccEEccccccccccccccccccccccccHHHHHHHHcccccccccccccEEEEEcccccccccccccccccccccccccEEcccHHHHHHHHHHccccccEEcEEEEEEEEEcccccccccEEEEEEEEEccEEEEEEEEEEEcccEEEEEEEEEEEcccccccccEEEEEEEEcccEEEEEEEEEEEEccccccccccccEEEccccccccccccEEEEEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEccccccccccccccccccccccccccccHcHHHHcccccccccccccEEEcccccEEEcccHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccccEEEccccccHHHHHccccccccccccccccEEccHHHHHHHHHHHccccccccccccEEEEEccccccccccEEEEEEEcccccEEEEEEHHccccccEEEEEEEEcccHHHHccEEEEEEEcccccEEEEEEccccHHHcHEEEEcccccEEEccHHHHHEccccccEEEEEEEccEcccc
Coil and Loop (DISEMBL)
mapggsackevVESDHTVInydikaesntaltktsfglggkqgiysnngvhellecpvctnlmyppihqcpnghtlcsncknrvhnccptcrfdlgnirCLALEKVAESLelpckyqslgchdifpyygklkheqhcrfrpyncpyagsecsvtgdipTLVAhlkddhqvdmhdgctfnhryvksdpneveNATWMLTVFNcfgrqfclHFEAFQLGMALVYMAFLRFmgdddeakKFSYSLEVGAHGRRLIwqgiprsirdshrkvrdsqdglIIQRNMAlyfsggdrteLKLRITGRIWKEE
Flexible Loop (DISEMBL)
mapggsackevveSDHTVINYDIKAESNTALTKTSFGLGGKQGIYSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKVAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFMGDDDEAKKFSYSLevgahgrrliwqgiprsirdshrkvrdsqdgliiqrnmalyfsggdrtelklritgriwkee
Low Complexity Region (SEG)
MAPGGSACKEVVESDHTVINYDIKAESNTALTKTSFGLGGKQGIYSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKVAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLRITGRIWKEE
Disordered region (IsUnstruct)
***********VESDHTVINYDIKAESNTALTKTSFGLGGKQGIYSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKVAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIR*********QDGLIIQRNMALYFSGGDRTELKLRITGRIW***
Disordered Region (DISOPRED)
************************************************GVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKVAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIP*********VRDSQDGLIIQRNMALYFSGGDRTELKLRITGRIWK**
Disordered Region (DISEMBL)
**********VVESDHTVINYDIKAESNTALTKTSFGLGGKQGIYSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKVAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIR********SQDGLIIQRNMALYFSGGDRTELKLRITGRIWKEE
Disordered Region (DISPRO)
***********************************************NGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKVAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLRITGRIW***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPGGSACKEVVESDHTVINYDIKAESNTALTKTSFGLGGKQGIYSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKVAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLRITGRIWKEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	304	2.2.26 [Sep-21-2011]
Q9M2P4	308	E3 ubiquitin-protein liga	yes	no	1.0	0.987	0.834	1e-154
P93748	305	Putative E3 ubiquitin-pro	no	no	0.993	0.990	0.811	1e-149
Q84JL3	326	E3 ubiquitin-protein liga	no	no	0.851	0.794	0.814	1e-128
Q8S3N1	309	E3 ubiquitin-protein liga	no	no	0.875	0.860	0.770	1e-124
Q9STN8	327	E3 ubiquitin-protein liga	no	no	0.871	0.810	0.766	1e-123
Q920M9	282	E3 ubiquitin-protein liga	yes	no	0.815	0.879	0.362	1e-41
P61092	282	E3 ubiquitin-protein liga	yes	no	0.815	0.879	0.362	1e-41
Q8IUQ4	282	E3 ubiquitin-protein liga	yes	no	0.815	0.879	0.362	2e-41
Q06985	282	E3 ubiquitin-protein liga	yes	no	0.815	0.879	0.358	2e-41
Q7ZVG6	282	E3 ubiquitin-protein liga	yes	no	0.815	0.879	0.358	4e-41

>sp|Q9M2P4|SINA2_ARATH E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=2 SV=1

 Score =  545 bits (1404), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 257/308 (83%), Positives = 279/308 (90%), Gaps = 4/308 (1%)

Query: 1   MAPGGSACKEVVESDHTVINYDIKAE----SNTALTKTSFGLGGKQGIYSNNGVHELLEC 56
           MAPGGSA KEV+ES+ T ++Y++K      +N   TK      GK GI+SNNGV+ELLEC
Sbjct: 1   MAPGGSALKEVMESNSTGMDYEVKTAKVEVNNNKPTKPGSAGIGKYGIHSNNGVYELLEC 60

Query: 57  PVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKVAESLELPCKY 116
           PVCTNLMYPPIHQCPNGHTLCSNCK RV N CPTCR++LGNIRCLALEKVAESLE+PC+Y
Sbjct: 61  PVCTNLMYPPIHQCPNGHTLCSNCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCRY 120

Query: 117 QSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDGC 176
           Q+LGCHDIFPYY KLKHEQHCRFRPY CPYAGSECSVTGDIPTLV HLKDDH+VDMHDGC
Sbjct: 121 QNLGCHDIFPYYSKLKHEQHCRFRPYTCPYAGSECSVTGDIPTLVVHLKDDHKVDMHDGC 180

Query: 177 TFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFMGDDDEAK 236
           TFNHRYVKS+P+EVENATWMLTVFNCFGRQFCLHFEAFQLGMA VYMAFLRFMGD++EAK
Sbjct: 181 TFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAK 240

Query: 237 KFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLRI 296
           KFSYSLEVGAHGR+L WQGIPRSIRDSHRKVRDSQDGLII RN+ALYFSGGDR ELKLR+
Sbjct: 241 KFSYSLEVGAHGRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGGDRQELKLRV 300

Query: 297 TGRIWKEE 304
           TGRIWKEE
Sbjct: 301 TGRIWKEE 308

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|P93748|SINA1_ARATH Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana GN=SINAT1 PE=3 SV=1

 Score =  529 bits (1362), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 249/307 (81%), Positives = 277/307 (90%), Gaps = 5/307 (1%)

Query: 1   MAPGGSACKEVVESDHTVINYDIK---AESNTALTKTSFGLGGKQGIYSNNGVHELLECP 57
           MAPGGSA KE +ES+ T ++Y++K    E+N+  TK+  G  GK   +S+NGV+ELLECP
Sbjct: 1   MAPGGSALKEALESNSTGVDYEVKMAKVEANSKPTKSGSGSIGK--FHSSNGVYELLECP 58

Query: 58  VCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKVAESLELPCKYQ 117
           VCTNLMYPPIHQCPNGHTLCS+CK RV N CPTCR++LGNIRCLALEKVAESLE+PC+YQ
Sbjct: 59  VCTNLMYPPIHQCPNGHTLCSSCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCRYQ 118

Query: 118 SLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDGCT 177
           +LGC DIFPYY KLKHEQHCRFR Y+CPYAGSECSVTGDIPTLV HLKDDH+VDMHDGCT
Sbjct: 119 NLGCQDIFPYYSKLKHEQHCRFRSYSCPYAGSECSVTGDIPTLVDHLKDDHKVDMHDGCT 178

Query: 178 FNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFMGDDDEAKK 237
           FNHRYVKS+P+EVENATWMLTVFNCFGRQFCLHFEAFQLGMA VYMAFLRFMGD++EAKK
Sbjct: 179 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKK 238

Query: 238 FSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLRIT 297
           FSYSLEVGAH R+L WQGIPRSIRDSHRKVRDSQDGLII RN+ALYFSG D+ ELKLR+T
Sbjct: 239 FSYSLEVGAHSRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGSDKEELKLRVT 298

Query: 298 GRIWKEE 304
           GRIWKEE
Sbjct: 299 GRIWKEE 305

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q84JL3|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1

 Score =  457 bits (1175), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 211/259 (81%), Positives = 233/259 (89%)

Query: 46  SNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEK 105
           +   VHELLECPVCTN MYPPIHQC NGHTLCS CK RVHN CPTCR +LG+IRCLALEK
Sbjct: 53  TTTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKARVHNRCPTCRQELGDIRCLALEK 112

Query: 106 VAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLK 165
           VAESLELPCK+ SLGC +IFPYY KLKHE  C FRPY+CPYAGSECSVTGDIP LVAHL+
Sbjct: 113 VAESLELPCKHMSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVTGDIPFLVAHLR 172

Query: 166 DDHQVDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAF 225
           DDH+VDMH GCTFNHRYVKS+P EVENATWMLTVF+CFG+ FCLHFEAFQLGMA VYMAF
Sbjct: 173 DDHKVDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAF 232

Query: 226 LRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFS 285
           LRFMGD+ EA+ ++YSLEVG +GR+LIW+G PRS+RDSHRKVRDS DGLIIQRNMAL+FS
Sbjct: 233 LRFMGDETEARNYNYSLEVGGYGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFS 292

Query: 286 GGDRTELKLRITGRIWKEE 304
           GGDR ELKLR+TGRIWKE+
Sbjct: 293 GGDRKELKLRVTGRIWKEQ 311

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8S3N1|SINA5_ARATH E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2

 Score =  446 bits (1146), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 205/266 (77%), Positives = 228/266 (85%)

Query: 39  GGKQGIYSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNI 98
           G    I     V+ELLECPVCTN MYPPIHQC NGHTLCS CK+RVHN CPTCR +LG+I
Sbjct: 29  GATVVISPATSVYELLECPVCTNSMYPPIHQCHNGHTLCSTCKSRVHNRCPTCRQELGDI 88

Query: 99  RCLALEKVAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIP 158
           RCLALEKVAESLELPCKY +LGC  IFPYY KLKHE  C FRPY+CPYAGSEC+  GDI 
Sbjct: 89  RCLALEKVAESLELPCKYYNLGCLGIFPYYSKLKHESQCNFRPYSCPYAGSECAAVGDIT 148

Query: 159 TLVAHLKDDHQVDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGM 218
            LVAHL+DDH+VDMH GCTFNHRYVKS+P EVENATWMLTVF CFG+ FCLHFEAFQLGM
Sbjct: 149 FLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFQCFGQYFCLHFEAFQLGM 208

Query: 219 ALVYMAFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQR 278
           A VYMAFLRFMGD+D+A+ ++YSLEVG  GR+  W+G PRS+RDSHRKVRDS DGLIIQR
Sbjct: 209 APVYMAFLRFMGDEDDARNYTYSLEVGGSGRKQTWEGTPRSVRDSHRKVRDSHDGLIIQR 268

Query: 279 NMALYFSGGDRTELKLRITGRIWKEE 304
           NMAL+FSGGD+ ELKLR+TGRIWKE+
Sbjct: 269 NMALFFSGGDKKELKLRVTGRIWKEQ 294

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Mediates the ubiquitin-mediated degradation of NAC021/NAC022, a transcription activator that functions downstream of the auxin signals, thereby acting as a down-regulator of auxin signals. Involved in the formation of lateral roots.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9STN8|SINA4_ARATH E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana GN=SINAT4 PE=2 SV=1

 Score =  441 bits (1134), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 203/265 (76%), Positives = 227/265 (85%)

Query: 40  GKQGIYSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIR 99
           G         V+ELLECPVCT  MYPPIHQC NGHTLCS CK RVHN CPTCR +LG+IR
Sbjct: 48  GPTATAPATSVYELLECPVCTYSMYPPIHQCHNGHTLCSTCKVRVHNRCPTCRQELGDIR 107

Query: 100 CLALEKVAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPT 159
           CLALEKVAESLELPCK+ +LGC +IFPYY KLKHE  C FRPY+CPYAGSEC + GDIP 
Sbjct: 108 CLALEKVAESLELPCKFYNLGCPEIFPYYSKLKHESLCNFRPYSCPYAGSECGIVGDIPF 167

Query: 160 LVAHLKDDHQVDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMA 219
           LVAHL+DDH+VDMH G TFNHRYVKS+P EVENATWMLTVF+CFG+ FCLHFEAFQLGM 
Sbjct: 168 LVAHLRDDHKVDMHAGSTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMG 227

Query: 220 LVYMAFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRN 279
            VYMAFLRFMGD+++A+ +SYSLEVG  GR+L W+G PRSIRDSHRKVRDS DGLIIQRN
Sbjct: 228 PVYMAFLRFMGDEEDARSYSYSLEVGGSGRKLTWEGTPRSIRDSHRKVRDSNDGLIIQRN 287

Query: 280 MALYFSGGDRTELKLRITGRIWKEE 304
           MAL+FSGGDR ELKLR+TG+IWKE+
Sbjct: 288 MALFFSGGDRKELKLRVTGKIWKEQ 312

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q920M9|SIAH1_RAT E3 ubiquitin-protein ligase SIAH1 OS=Rattus norvegicus GN=Siah1 PE=1 SV=2

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 92/254 (36%), Positives = 140/254 (55%), Gaps = 6/254 (2%)

Query: 46  SNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEK 105
           SNN +  L ECPVC + + PPI QC +GH +CSNC+ ++  CCPTCR  LG+IR LA+EK
Sbjct: 31  SNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEK 89

Query: 106 VAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLK 165
           VA S+  PCKY S GC    P+  K +HE+ C FRPY+CP  G+ C   G +  ++ HL 
Sbjct: 90  VANSVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 149

Query: 166 DDHQ-VDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQ-LGMALVYM 223
             H+ +    G   +  ++ +D N      W++ + +CFG  F L  E  +       + 
Sbjct: 150 HQHKSITTLQG--EDIVFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFF 206

Query: 224 AFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALY 283
           A ++ +G   +A+ F+Y LE+  H RRL W+  PRSI +       + D L+   ++A  
Sbjct: 207 AIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQL 266

Query: 284 FSGGDRTELKLRIT 297
           F+      + + I+
Sbjct: 267 FAENGNLGINVTIS 280

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Mediates E3 ubiquitin ligase activity either through direct binding to substrates or by functioning as the essential RING domain subunit of larger E3 complexes. Triggers the ubiquitin-mediated degradation of many substrates, including proteins involved in transcription regulation (MYB, POU2AF1, PML and RBBP8), a cell surface receptor (DCC), cytoplasmic signal transduction molecules (KLF10/TIEG1 and NUMB), an antiapoptotic protein (BAG1), a microtubule motor protein (KIF22), a protein involved in synaptic vesicle function in neurons (SYP), a structural protein (CTNNB1) and SNCAIP. Confers constitutive instability to HIPK2 through proteasomal degradation. It is thereby involved in many cellular processes such as apoptosis, tumor suppression, cell cycle, axon guidance, transcription, spermatogenesis and TNF-alpha signaling. Has some overlapping function with SIAH2. Induces apoptosis in cooperation with PEG3 (By similarity). Upon nitric oxid (NO) generation that follows apoptotic stimulation, interacts with S-nitrosylated GAPDH, mediating the translocation of GAPDH to the nucleus. GAPDH acts as a stabilizer of SIAH1, facilitating the degradation of nuclear proteins.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P61092|SIA1A_MOUSE E3 ubiquitin-protein ligase SIAH1A OS=Mus musculus GN=Siah1a PE=1 SV=1

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 92/254 (36%), Positives = 140/254 (55%), Gaps = 6/254 (2%)

Query: 46  SNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEK 105
           SNN +  L ECPVC + + PPI QC +GH +CSNC+ ++  CCPTCR  LG+IR LA+EK
Sbjct: 31  SNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEK 89

Query: 106 VAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLK 165
           VA S+  PCKY S GC    P+  K +HE+ C FRPY+CP  G+ C   G +  ++ HL 
Sbjct: 90  VANSVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 149

Query: 166 DDHQ-VDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQ-LGMALVYM 223
             H+ +    G   +  ++ +D N      W++ + +CFG  F L  E  +       + 
Sbjct: 150 HQHKSITTLQG--EDIVFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFF 206

Query: 224 AFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALY 283
           A ++ +G   +A+ F+Y LE+  H RRL W+  PRSI +       + D L+   ++A  
Sbjct: 207 AIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQL 266

Query: 284 FSGGDRTELKLRIT 297
           F+      + + I+
Sbjct: 267 FAENGNLGINVTIS 280

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Mediates E3 ubiquitin ligase activity either through direct binding to substrates or by functioning as the essential RING domain subunit of larger E3 complexes. Triggers the ubiquitin-mediated degradation of many substrates, including proteins involved in transcription regulation (MYB, POU2AF1, PML and RBBP8), a cell surface receptor (DCC), the cell-surface receptor-type tyrosine kinase FLT3, the cytoplasmic signal transduction molecules (KLF10/TIEG1 and NUMB), an antiapoptotic protein (BAG1), a microtubule motor protein (KIF22), a protein involved in synaptic vesicle function in neurons (SYP), a structural protein (CTNNB1) and SNCAIP. Confers constitutive instability to HIPK2 through proteasomal degradation. It is thereby involved in many cellular processes such as apoptosis, tumor suppression, cell cycle, axon guidance, transcription, spermatogenesis and TNF-alpha signaling. Has some overlapping function with SIAH2. Required for completion of meiosis I in males. Induces apoptosis in cooperation with PEG3. Upon nitric oxid (NO) generation that follows apoptotic stimulation, interacts with S-nitrosylated GAPDH, mediating the translocation of GAPDH to the nucleus. GAPDH acts as a stabilizer of SIAH1, facilitating the degradation of nuclear proteins.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8IUQ4|SIAH1_HUMAN E3 ubiquitin-protein ligase SIAH1 OS=Homo sapiens GN=SIAH1 PE=1 SV=2

 Score =  169 bits (429), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 92/254 (36%), Positives = 139/254 (54%), Gaps = 6/254 (2%)

Query: 46  SNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEK 105
           SNN +  L ECPVC + + PPI QC +GH +CSNC+ ++  CCPTCR  LG+IR LA+EK
Sbjct: 31  SNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEK 89

Query: 106 VAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLK 165
           VA S+  PCKY S GC    P+  K  HE+ C FRPY+CP  G+ C   G +  ++ HL 
Sbjct: 90  VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 149

Query: 166 DDHQ-VDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQ-LGMALVYM 223
             H+ +    G   +  ++ +D N      W++ + +CFG  F L  E  +       + 
Sbjct: 150 HQHKSITTLQG--EDIVFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFF 206

Query: 224 AFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALY 283
           A ++ +G   +A+ F+Y LE+  H RRL W+  PRSI +       + D L+   ++A  
Sbjct: 207 AIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQL 266

Query: 284 FSGGDRTELKLRIT 297
           F+      + + I+
Sbjct: 267 FAENGNLGINVTIS 280

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Mediates E3 ubiquitin ligase activity either through direct binding to substrates or by functioning as the essential RING domain subunit of larger E3 complexes. Triggers the ubiquitin-mediated degradation of many substrates, including proteins involved in transcription regulation (MYB, POU2AF1, PML and RBBP8), a cell surface receptor (DCC), the cell-surface receptor-type tyrosine kinase FLT3, the cytoplasmic signal transduction molecules (KLF10/TIEG1 and NUMB), an antiapoptotic protein (BAG1), a microtubule motor protein (KIF22), a protein involved in synaptic vesicle function in neurons (SYP), a structural protein (CTNNB1) and SNCAIP. Confers constitutive instability to HIPK2 through proteasomal degradation. It is thereby involved in many cellular processes such as apoptosis, tumor suppression, cell cycle, axon guidance, transcription regulation, spermatogenesis and TNF-alpha signaling. Has some overlapping function with SIAH2. Induces apoptosis in cooperation with PEG3. Upon nitric oxid (NO) generation that follows apoptotic stimulation, interacts with S-nitrosylated GAPDH, mediating the translocation of GAPDH to the nucleus. GAPDH acts as a stabilizer of SIAH1, facilitating the degradation of nuclear proteins.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q06985|SIA1B_MOUSE E3 ubiquitin-protein ligase SIAH1B OS=Mus musculus GN=Siah1b PE=2 SV=2

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/254 (35%), Positives = 140/254 (55%), Gaps = 6/254 (2%)

Query: 46  SNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEK 105
           SNN +  L ECPVC + + PPI QC +GH +CSNC+ ++  CCPTCR  LG+IR LA+EK
Sbjct: 31  SNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAVEK 89

Query: 106 VAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLK 165
           VA S+  PCKY + GC    P+  K +HE+ C FRPY+CP  G+ C   G +  ++ HL 
Sbjct: 90  VANSVLFPCKYSASGCEITLPHTKKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 149

Query: 166 DDHQ-VDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQ-LGMALVYM 223
             H+ +    G   +  ++ +D N      W++ + +CFG  F L  E  +       + 
Sbjct: 150 HQHKSITTLQG--EDIVFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFF 206

Query: 224 AFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALY 283
           A ++ +G   +A+ F+Y LE+  H RRL W+  PRSI +       + D L+   ++A  
Sbjct: 207 AIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQL 266

Query: 284 FSGGDRTELKLRIT 297
           F+      + + I+
Sbjct: 267 FAENGNLGINVTIS 280

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Mediates E3 ubiquitin ligase activity either through direct binding to substrates or by functioning as the essential RING domain subunit of larger E3 complexes. Confers constitutive instability to HIPK2 through proteasomal degradation. Probably triggers the ubiquitin-mediated degradation of many substrates. Upon nitric oxid (NO) generation that follows apoptotic stimulation, interacts with S-nitrosylated GAPDH, mediating the translocation of GAPDH to the nucleus. GAPDH acts as a stabilizer of SIAH1, facilitating the degradation of nuclear proteins.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7ZVG6|SIAH1_DANRE E3 ubiquitin-protein ligase Siah1 OS=Danio rerio GN=siah1 PE=2 SV=2

 Score =  168 bits (426), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 91/254 (35%), Positives = 140/254 (55%), Gaps = 6/254 (2%)

Query: 46  SNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEK 105
           SN+ +  L ECPVC + + PPI QC +GH +CSNC+ ++  CCPTCR  LG+IR LA+EK
Sbjct: 31  SNSDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEK 89

Query: 106 VAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLK 165
           VA S+  PCKY S GC    P+  K +HE+ C FRPY+CP  G+ C   G +  ++ HL 
Sbjct: 90  VANSVLFPCKYASSGCEVTLPHTDKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLL 149

Query: 166 DDHQ-VDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQ-LGMALVYM 223
             H+ +    G   +  ++ +D N      W++ + +CFG  F L  E  +       + 
Sbjct: 150 HQHKSITTLQG--EDIVFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFF 206

Query: 224 AFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALY 283
           A ++ +G   +A+ F+Y LE+  H RRL W+  PRSI +       + D L+   ++A  
Sbjct: 207 AIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQL 266

Query: 284 FSGGDRTELKLRIT 297
           F+      + + I+
Sbjct: 267 FAENGNLGINVTIS 280

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
255587731	304	Ubiquitin ligase SINAT2, putative [Ricin	0.990	0.990	0.876	1e-160
224088178	307	predicted protein [Populus trichocarpa]	1.0	0.990	0.856	1e-156
224139900	304	predicted protein [Populus trichocarpa]	0.990	0.990	0.853	1e-154
15230936	308	E3 ubiquitin-protein ligase SINAT2 [Arab	1.0	0.987	0.834	1e-152
297817142	309	seven in absentia family protein [Arabid	1.0	0.983	0.828	1e-152
225441499	315	PREDICTED: E3 ubiquitin-protein ligase S	0.996	0.961	0.833	1e-151
15227480	305	ubiquitin-protein ligase SIAH1 [Arabidop	0.993	0.990	0.811	1e-148
297827861	305	seven in absentia family protein [Arabid	0.993	0.990	0.814	1e-147
359806480	309	uncharacterized protein LOC100813966 [Gl	1.0	0.983	0.815	1e-147
225435638	308	PREDICTED: E3 ubiquitin-protein ligase S	1.0	0.987	0.762	1e-144

>gi|255587731|ref|XP_002534375.1| Ubiquitin ligase SINAT2, putative [Ricinus communis] gi|223525415|gb|EEF28013.1| Ubiquitin ligase SINAT2, putative [Ricinus communis]

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 269/307 (87%), Positives = 290/307 (94%), Gaps = 6/307 (1%)

Query: 1   MAPGGSACKEVVESDHTVINYDI---KAESNTALTKTSFGLGGKQGIYSNNGVHELLECP 57
           MAPGGSACKEV+ES   + +Y+I   K E+N+ +TK   GLGGKQG+YSNNGVHELLECP
Sbjct: 1   MAPGGSACKEVLESHPAISDYEIGTAKTENNSTVTK---GLGGKQGLYSNNGVHELLECP 57

Query: 58  VCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKVAESLELPCKYQ 117
           VCTNLMYPPIHQCPNGHTLCSNCK+RVHNCCPTCR+DLGNIRCLALEKVAESLELPCKYQ
Sbjct: 58  VCTNLMYPPIHQCPNGHTLCSNCKSRVHNCCPTCRYDLGNIRCLALEKVAESLELPCKYQ 117

Query: 118 SLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDGCT 177
            LGCHDIFPYY KLKHEQHCRFRPY+CPYAGSECS+TGDIPTLVAHLKDDH+VDMHDGCT
Sbjct: 118 DLGCHDIFPYYSKLKHEQHCRFRPYSCPYAGSECSITGDIPTLVAHLKDDHKVDMHDGCT 177

Query: 178 FNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFMGDDDEAKK 237
           FNHRYVKS+P+EVENATWMLTVFNCFGRQFCLHFEAFQ+GMA VYMAFLRFMGDD+EAKK
Sbjct: 178 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQIGMAPVYMAFLRFMGDDNEAKK 237

Query: 238 FSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLRIT 297
           FSYSLEVG +GR+LIWQGIPRSIRDSHRKVRDSQDGLIIQR++ALYFSGGDR ELKLRIT
Sbjct: 238 FSYSLEVGGNGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRSLALYFSGGDRQELKLRIT 297

Query: 298 GRIWKEE 304
           GRIWKEE
Sbjct: 298 GRIWKEE 304

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088178|ref|XP_002308357.1| predicted protein [Populus trichocarpa] gi|222854333|gb|EEE91880.1| predicted protein [Populus trichocarpa]

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 263/307 (85%), Positives = 284/307 (92%), Gaps = 3/307 (0%)

Query: 1   MAPGGSACKEVVESDHTVINYDI---KAESNTALTKTSFGLGGKQGIYSNNGVHELLECP 57
           MAPGGSA KEV+E   TV + D+   K+E+N   TK +  LGGK G+YSNNGVHELLECP
Sbjct: 1   MAPGGSAFKEVLEFHSTVADCDVANSKSENNITPTKGTVVLGGKHGVYSNNGVHELLECP 60

Query: 58  VCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKVAESLELPCKYQ 117
           VCTNLMYPPIHQCPNGHTLCSNCK RVHNCCPTCR+DLGNIRCLALEKVAESLELPCK+Q
Sbjct: 61  VCTNLMYPPIHQCPNGHTLCSNCKLRVHNCCPTCRYDLGNIRCLALEKVAESLELPCKFQ 120

Query: 118 SLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDGCT 177
           SLGC DIFPYY KLKHEQHCRFRPY+CPYAGSECSVTGDIP LV+HLKDDH+VDMHDGCT
Sbjct: 121 SLGCLDIFPYYSKLKHEQHCRFRPYSCPYAGSECSVTGDIPALVSHLKDDHKVDMHDGCT 180

Query: 178 FNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFMGDDDEAKK 237
           FNHRYVKS+P+EVENATWMLTVFNCFGRQFCLHFEAFQLGMA VYMAFLRFMGDD+EAKK
Sbjct: 181 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKK 240

Query: 238 FSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLRIT 297
           FSYSLEVG +GR+L+WQGIPRSIRDSHRKVRDSQDGLIIQRN+ALYFSGGDR ELKLR+T
Sbjct: 241 FSYSLEVGGNGRKLVWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGDRQELKLRVT 300

Query: 298 GRIWKEE 304
           GR+WKEE
Sbjct: 301 GRVWKEE 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139900|ref|XP_002323331.1| predicted protein [Populus trichocarpa] gi|222867961|gb|EEF05092.1| predicted protein [Populus trichocarpa]

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 262/307 (85%), Positives = 280/307 (91%), Gaps = 6/307 (1%)

Query: 1   MAPGGSACKEVVESDHTVINYDI---KAESNTALTKTSFGLGGKQGIYSNNGVHELLECP 57
           MAPGGSA KEV+E    V   DI   K+E+N A TK +  L GK G+YSNNGVHELLECP
Sbjct: 1   MAPGGSAFKEVLE---LVAECDIATSKSENNIAPTKGTVVLSGKHGVYSNNGVHELLECP 57

Query: 58  VCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKVAESLELPCKYQ 117
           VCTNLMYPPIHQCPNGHTLCS CK RVHNCCPTCR+DLGNIRCLALEKVAESLELPCKYQ
Sbjct: 58  VCTNLMYPPIHQCPNGHTLCSACKLRVHNCCPTCRYDLGNIRCLALEKVAESLELPCKYQ 117

Query: 118 SLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDGCT 177
           SLGC D+FPYY KLKHEQHCRFRPY+CPYAGSECSVTGDIP L AHLKDDH+VDMHDGCT
Sbjct: 118 SLGCLDVFPYYSKLKHEQHCRFRPYSCPYAGSECSVTGDIPALAAHLKDDHKVDMHDGCT 177

Query: 178 FNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFMGDDDEAKK 237
           FNHRYVKS+P+EVENATWMLTVFNCFGRQFCLHFEAFQLGMA VYMAFLRFMGDD+EAKK
Sbjct: 178 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKK 237

Query: 238 FSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLRIT 297
           FSYSLEVG +GR+L+WQGIPRSIRDSHRKVRDSQDGLIIQRN+ALYFSGGDR ELKLR+T
Sbjct: 238 FSYSLEVGGNGRKLVWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGDRKELKLRVT 297

Query: 298 GRIWKEE 304
           GR+WKEE
Sbjct: 298 GRVWKEE 304

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230936|ref|NP_191363.1| E3 ubiquitin-protein ligase SINAT2 [Arabidopsis thaliana] gi|46577554|sp|Q9M2P4.1|SINA2_ARATH RecName: Full=E3 ubiquitin-protein ligase SINAT2; AltName: Full=Seven in absentia homolog 2 gi|6729547|emb|CAB67632.1| putative protein [Arabidopsis thaliana] gi|21593355|gb|AAM65304.1| putative RING zinc finger protein [Arabidopsis thaliana] gi|105830184|gb|ABF74716.1| At3g58040 [Arabidopsis thaliana] gi|332646214|gb|AEE79735.1| E3 ubiquitin-protein ligase SINAT2 [Arabidopsis thaliana]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 257/308 (83%), Positives = 279/308 (90%), Gaps = 4/308 (1%)

Query: 1   MAPGGSACKEVVESDHTVINYDIKAE----SNTALTKTSFGLGGKQGIYSNNGVHELLEC 56
           MAPGGSA KEV+ES+ T ++Y++K      +N   TK      GK GI+SNNGV+ELLEC
Sbjct: 1   MAPGGSALKEVMESNSTGMDYEVKTAKVEVNNNKPTKPGSAGIGKYGIHSNNGVYELLEC 60

Query: 57  PVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKVAESLELPCKY 116
           PVCTNLMYPPIHQCPNGHTLCSNCK RV N CPTCR++LGNIRCLALEKVAESLE+PC+Y
Sbjct: 61  PVCTNLMYPPIHQCPNGHTLCSNCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCRY 120

Query: 117 QSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDGC 176
           Q+LGCHDIFPYY KLKHEQHCRFRPY CPYAGSECSVTGDIPTLV HLKDDH+VDMHDGC
Sbjct: 121 QNLGCHDIFPYYSKLKHEQHCRFRPYTCPYAGSECSVTGDIPTLVVHLKDDHKVDMHDGC 180

Query: 177 TFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFMGDDDEAK 236
           TFNHRYVKS+P+EVENATWMLTVFNCFGRQFCLHFEAFQLGMA VYMAFLRFMGD++EAK
Sbjct: 181 TFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAK 240

Query: 237 KFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLRI 296
           KFSYSLEVGAHGR+L WQGIPRSIRDSHRKVRDSQDGLII RN+ALYFSGGDR ELKLR+
Sbjct: 241 KFSYSLEVGAHGRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGGDRQELKLRV 300

Query: 297 TGRIWKEE 304
           TGRIWKEE
Sbjct: 301 TGRIWKEE 308

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817142|ref|XP_002876454.1| seven in absentia family protein [Arabidopsis lyrata subsp. lyrata] gi|297322292|gb|EFH52713.1| seven in absentia family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 256/309 (82%), Positives = 279/309 (90%), Gaps = 5/309 (1%)

Query: 1   MAPGGSACKEVVESDHTVINYDIK-----AESNTALTKTSFGLGGKQGIYSNNGVHELLE 55
           MAPGGSA KEV+ES+ T ++Y++K       +N   TK      GK GI+SNNGV+ELLE
Sbjct: 1   MAPGGSALKEVMESNSTGMDYEVKTAKVEVNNNNKPTKPGSAGIGKYGIHSNNGVYELLE 60

Query: 56  CPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKVAESLELPCK 115
           CPVCTNLMYPPIHQCPNGHTLCSNCK RV N CPTCR++LGNIRCLALEKVAESLE+PC+
Sbjct: 61  CPVCTNLMYPPIHQCPNGHTLCSNCKVRVQNTCPTCRYELGNIRCLALEKVAESLEVPCR 120

Query: 116 YQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDG 175
           YQ+LGCHDIFPYY KLKHEQHCRFRPY CPYAGSEC+VTGDIPTLV HLKDDH+VDMHDG
Sbjct: 121 YQNLGCHDIFPYYSKLKHEQHCRFRPYTCPYAGSECAVTGDIPTLVVHLKDDHKVDMHDG 180

Query: 176 CTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFMGDDDEA 235
           CTFNHRYVKS+P+EVENATWMLTVFNCFGRQFCLHFEAFQLGMA VYMAFLRFMGD++EA
Sbjct: 181 CTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEA 240

Query: 236 KKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLR 295
           KKFSYSLEVGAHGR+L WQGIPRSIRDSHRKVRDSQDGLII RN+ALYFSGGDR ELKLR
Sbjct: 241 KKFSYSLEVGAHGRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGGDRQELKLR 300

Query: 296 ITGRIWKEE 304
           +TGRIWKEE
Sbjct: 301 VTGRIWKEE 309

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441499|ref|XP_002280243.1| PREDICTED: E3 ubiquitin-protein ligase SINAT2 isoform 1 [Vitis vinifera] gi|4584257|emb|CAB40578.1| SINA2p [Vitis vinifera] gi|297739816|emb|CBI29998.3| unnamed protein product [Vitis vinifera]

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 255/306 (83%), Positives = 277/306 (90%), Gaps = 3/306 (0%)

Query: 1   MAPGGSACKEVVESDHTVINYDI---KAESNTALTKTSFGLGGKQGIYSNNGVHELLECP 57
           MAPGGS  KEV+ES  TV +YDI   KA++N    KT+ GL GK+GI S NGVHELLECP
Sbjct: 1   MAPGGSTYKEVLESHSTVTDYDIAMTKADTNLTPAKTTAGLSGKKGISSPNGVHELLECP 60

Query: 58  VCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKVAESLELPCKYQ 117
           VCT+LMYPPI+QCP+GHTLCSNCK+RVHNCCPTCR +LG+IRCLALEKVAESLELPC+YQ
Sbjct: 61  VCTSLMYPPIYQCPSGHTLCSNCKSRVHNCCPTCRHELGDIRCLALEKVAESLELPCRYQ 120

Query: 118 SLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDGCT 177
           SLGCHDIFPYY KLKHEQ CRF PYNCPYAG ECSVTGDIPTLV HLK DH+VDMHDGCT
Sbjct: 121 SLGCHDIFPYYSKLKHEQQCRFHPYNCPYAGFECSVTGDIPTLVEHLKGDHKVDMHDGCT 180

Query: 178 FNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFMGDDDEAKK 237
           FNHRYVKS+P EVENATWMLTVFNCFG+QFCLHFEAFQLG A VYMAFLRFMGDD+EAKK
Sbjct: 181 FNHRYVKSNPQEVENATWMLTVFNCFGKQFCLHFEAFQLGTAPVYMAFLRFMGDDNEAKK 240

Query: 238 FSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLRIT 297
           FSYSLEVG + R+LIWQG+PRSIRDSHRKVRDSQDGLIIQRN+ALYFSGGDR ELKLR+T
Sbjct: 241 FSYSLEVGGNSRKLIWQGVPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGDRQELKLRVT 300

Query: 298 GRIWKE 303
           GRIWKE
Sbjct: 301 GRIWKE 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15227480|ref|NP_181729.1| ubiquitin-protein ligase SIAH1 [Arabidopsis thaliana] gi|46577332|sp|P93748.1|SINA1_ARATH RecName: Full=Putative E3 ubiquitin-protein ligase SINAT1; AltName: Full=Seven in absentia homolog 1 gi|1871185|gb|AAB63545.1| putative RING zinc finger protein [Arabidopsis thaliana] gi|330254964|gb|AEC10058.1| ubiquitin-protein ligase SIAH1 [Arabidopsis thaliana]

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 249/307 (81%), Positives = 277/307 (90%), Gaps = 5/307 (1%)

Query: 1   MAPGGSACKEVVESDHTVINYDIK---AESNTALTKTSFGLGGKQGIYSNNGVHELLECP 57
           MAPGGSA KE +ES+ T ++Y++K    E+N+  TK+  G  GK   +S+NGV+ELLECP
Sbjct: 1   MAPGGSALKEALESNSTGVDYEVKMAKVEANSKPTKSGSGSIGK--FHSSNGVYELLECP 58

Query: 58  VCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKVAESLELPCKYQ 117
           VCTNLMYPPIHQCPNGHTLCS+CK RV N CPTCR++LGNIRCLALEKVAESLE+PC+YQ
Sbjct: 59  VCTNLMYPPIHQCPNGHTLCSSCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCRYQ 118

Query: 118 SLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDGCT 177
           +LGC DIFPYY KLKHEQHCRFR Y+CPYAGSECSVTGDIPTLV HLKDDH+VDMHDGCT
Sbjct: 119 NLGCQDIFPYYSKLKHEQHCRFRSYSCPYAGSECSVTGDIPTLVDHLKDDHKVDMHDGCT 178

Query: 178 FNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFMGDDDEAKK 237
           FNHRYVKS+P+EVENATWMLTVFNCFGRQFCLHFEAFQLGMA VYMAFLRFMGD++EAKK
Sbjct: 179 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKK 238

Query: 238 FSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLRIT 297
           FSYSLEVGAH R+L WQGIPRSIRDSHRKVRDSQDGLII RN+ALYFSG D+ ELKLR+T
Sbjct: 239 FSYSLEVGAHSRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGSDKEELKLRVT 298

Query: 298 GRIWKEE 304
           GRIWKEE
Sbjct: 299 GRIWKEE 305

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827861|ref|XP_002881813.1| seven in absentia family protein [Arabidopsis lyrata subsp. lyrata] gi|297327652|gb|EFH58072.1| seven in absentia family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 250/307 (81%), Positives = 277/307 (90%), Gaps = 5/307 (1%)

Query: 1   MAPGGSACKEVVESDHTVINYDIK---AESNTALTKTSFGLGGKQGIYSNNGVHELLECP 57
           MAPGGSA KE +ES+ T ++Y++K    E+N+  TK+  G  GK   +S+NGV+ELLEC 
Sbjct: 1   MAPGGSALKEALESNSTGLDYEVKMSRVETNSKPTKSGSGPIGK--FHSSNGVYELLECL 58

Query: 58  VCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKVAESLELPCKYQ 117
           VCTNLMYPPIHQCPNGHTLCS+CK RV N CPTCR++LGNIRCLALEKVAESLE+PC+YQ
Sbjct: 59  VCTNLMYPPIHQCPNGHTLCSSCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCRYQ 118

Query: 118 SLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDGCT 177
           +LGCHDIFPYY KLKHEQHCRFR YNCPYAGSECSVTGDIPTLV HLKDDH+VDMHDGCT
Sbjct: 119 NLGCHDIFPYYSKLKHEQHCRFRSYNCPYAGSECSVTGDIPTLVDHLKDDHKVDMHDGCT 178

Query: 178 FNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFMGDDDEAKK 237
           FNHRYVKS+P+EVENATWMLTVFNCFGRQFCLHFEAFQLGMA VYMAFLRFMGD++EAKK
Sbjct: 179 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKK 238

Query: 238 FSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLRIT 297
           FSYSLEVGAH R+L WQGIPRSIRDSHRKVRDSQDGLII RN+ALYFSG D+ ELKLR+T
Sbjct: 239 FSYSLEVGAHSRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGSDKEELKLRVT 298

Query: 298 GRIWKEE 304
           GRIWKEE
Sbjct: 299 GRIWKEE 305

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806480|ref|NP_001240996.1| uncharacterized protein LOC100813966 [Glycine max] gi|255646961|gb|ACU23950.1| unknown [Glycine max]

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 252/309 (81%), Positives = 273/309 (88%), Gaps = 5/309 (1%)

Query: 1   MAPGGSACKEVVESDHTVINYDI-----KAESNTALTKTSFGLGGKQGIYSNNGVHELLE 55
           MAPG S  KEV+ES     +Y+      +A+SN   TK+S GL GK GI SNNGV+ELL 
Sbjct: 1   MAPGSSVFKEVLESHLMSSDYETGKAKSEAKSNITSTKSSVGLSGKSGISSNNGVYELLG 60

Query: 56  CPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKVAESLELPCK 115
           CPVC NLMYPPIHQCPNGHTLCS+CK  VHN CP+C  DLGNIRCLALEKVAESLELPC+
Sbjct: 61  CPVCKNLMYPPIHQCPNGHTLCSHCKVEVHNICPSCHHDLGNIRCLALEKVAESLELPCR 120

Query: 116 YQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDG 175
           YQSLGCHDIFPYY KLKHEQ+C FRPYNCPYAGSECSV GDIPTLVAHLKDDH+VDMHDG
Sbjct: 121 YQSLGCHDIFPYYTKLKHEQNCGFRPYNCPYAGSECSVMGDIPTLVAHLKDDHKVDMHDG 180

Query: 176 CTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFMGDDDEA 235
           CTFNHRYVK++P+EVENATWMLTVFN FGR FCLHFEAFQLG A VYMAFLRFMGDD+EA
Sbjct: 181 CTFNHRYVKANPHEVENATWMLTVFNSFGRHFCLHFEAFQLGSAPVYMAFLRFMGDDNEA 240

Query: 236 KKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLR 295
           KKFSYSLEVGA+GR+LIWQGIPRSIRDSHRKVRDSQDGLIIQRN+ALYFSGG+R ELKLR
Sbjct: 241 KKFSYSLEVGANGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLR 300

Query: 296 ITGRIWKEE 304
           ITGRIW+EE
Sbjct: 301 ITGRIWREE 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435638|ref|XP_002285659.1| PREDICTED: E3 ubiquitin-protein ligase SINAT2 [Vitis vinifera] gi|297746416|emb|CBI16472.3| unnamed protein product [Vitis vinifera]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 235/308 (76%), Positives = 270/308 (87%), Gaps = 4/308 (1%)

Query: 1   MAPGGSACKEVVESDHTVINYDIKAES----NTALTKTSFGLGGKQGIYSNNGVHELLEC 56
           MAPGG  CKEV ES     +YD+   +    ++   K + G+GGK G+ S +GVHELLEC
Sbjct: 1   MAPGGGICKEVCESRSAFADYDVTTANLELRSSPFRKATTGVGGKHGMPSTSGVHELLEC 60

Query: 57  PVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKVAESLELPCKY 116
           PVC +LM+PPIHQCPNGHTLCSNCK RVHNCCPTCRF+LGNIRCLALEK+AESLELPC+Y
Sbjct: 61  PVCMDLMHPPIHQCPNGHTLCSNCKARVHNCCPTCRFELGNIRCLALEKIAESLELPCRY 120

Query: 117 QSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDGC 176
           Q  GCHDIFPYY KLKHEQ+C+FRPY+CPYAG+ECSVTGDIP LV HLKDDH+VDMHDGC
Sbjct: 121 QIFGCHDIFPYYSKLKHEQNCQFRPYSCPYAGAECSVTGDIPLLVMHLKDDHKVDMHDGC 180

Query: 177 TFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFMGDDDEAK 236
           TFNHRYVKS+P EVENATWMLTVFNCFGRQFCLHFEAF LGMA VYMAFLRFMGD++EA+
Sbjct: 181 TFNHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFHLGMAPVYMAFLRFMGDENEAR 240

Query: 237 KFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLRI 296
           KFSYSLEVG +GR+LIWQG+PRSIRDSH+ VRDSQDGL+IQR +AL+FSGG+R +LKL++
Sbjct: 241 KFSYSLEVGGYGRKLIWQGVPRSIRDSHKMVRDSQDGLVIQRKLALFFSGGERQQLKLKV 300

Query: 297 TGRIWKEE 304
            GRIWKE+
Sbjct: 301 AGRIWKEQ 308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
TAIR|locus:2095848	308	SINAT2 "seven in absentia of A	0.996	0.983	0.838	5.7e-146
TAIR|locus:2064642	305	AT2G41980 [Arabidopsis thalian	0.993	0.990	0.811	5.5e-141
TAIR|locus:2076810	326	AT3G61790 [Arabidopsis thalian	0.967	0.901	0.729	1.5e-122
TAIR|locus:2137395	327	AT4G27880 [Arabidopsis thalian	0.838	0.779	0.792	1.6e-116
TAIR|locus:2091581	220	SINA2 "AT3G13672" [Arabidopsis	0.565	0.781	0.577	9.6e-57
MGI|MGI:108064	282	Siah1a "seven in absentia 1A"	0.809	0.872	0.366	4e-42
RGD|620449	282	Siah1a "seven in absentia 1A"	0.809	0.872	0.366	4e-42
UNIPROTKB|Q920M9	282	Siah1 "E3 ubiquitin-protein li	0.809	0.872	0.366	4e-42
UNIPROTKB|F1P2G0	282	SIAH1 "Uncharacterized protein	0.809	0.872	0.366	6.6e-42
UNIPROTKB|F1N5G3	313	SIAH1 "Uncharacterized protein	0.809	0.785	0.366	6.6e-42

TAIR|locus:2095848 SINAT2 "seven in absentia of Arabidopsis 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1426 (507.0 bits), Expect = 5.7e-146, P = 5.7e-146
 Identities = 259/309 (83%), Positives = 282/309 (91%)

Query:     1 MAPGGSACKEVVESDHTVINYDIKAE----SNTALTKT-SFGLGGKQGIYSNNGVHELLE 55
             MAPGGSA KEV+ES+ T ++Y++K      +N   TK  S G+G K GI+SNNGV+ELLE
Sbjct:     1 MAPGGSALKEVMESNSTGMDYEVKTAKVEVNNNKPTKPGSAGIG-KYGIHSNNGVYELLE 59

Query:    56 CPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKVAESLELPCK 115
             CPVCTNLMYPPIHQCPNGHTLCSNCK RV N CPTCR++LGNIRCLALEKVAESLE+PC+
Sbjct:    60 CPVCTNLMYPPIHQCPNGHTLCSNCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCR 119

Query:   116 YQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDG 175
             YQ+LGCHDIFPYY KLKHEQHCRFRPY CPYAGSECSVTGDIPTLV HLKDDH+VDMHDG
Sbjct:   120 YQNLGCHDIFPYYSKLKHEQHCRFRPYTCPYAGSECSVTGDIPTLVVHLKDDHKVDMHDG 179

Query:   176 CTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFMGDDDEA 235
             CTFNHRYVKS+P+EVENATWMLTVFNCFGRQFCLHFEAFQLGMA VYMAFLRFMGD++EA
Sbjct:   180 CTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEA 239

Query:   236 KKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLR 295
             KKFSYSLEVGAHGR+L WQGIPRSIRDSHRKVRDSQDGLII RN+ALYFSGGDR ELKLR
Sbjct:   240 KKFSYSLEVGAHGRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGGDRQELKLR 299

Query:   296 ITGRIWKEE 304
             +TGRIWKEE
Sbjct:   300 VTGRIWKEE 308

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2064642 AT2G41980 [Arabidopsis thaliana (taxid:3702)]

 Score = 1379 (490.5 bits), Expect = 5.5e-141, P = 5.5e-141
 Identities = 249/307 (81%), Positives = 277/307 (90%)

Query:     1 MAPGGSACKEVVESDHTVINYDIK---AESNTALTKTSFGLGGKQGIYSNNGVHELLECP 57
             MAPGGSA KE +ES+ T ++Y++K    E+N+  TK+  G  GK   +S+NGV+ELLECP
Sbjct:     1 MAPGGSALKEALESNSTGVDYEVKMAKVEANSKPTKSGSGSIGK--FHSSNGVYELLECP 58

Query:    58 VCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKVAESLELPCKYQ 117
             VCTNLMYPPIHQCPNGHTLCS+CK RV N CPTCR++LGNIRCLALEKVAESLE+PC+YQ
Sbjct:    59 VCTNLMYPPIHQCPNGHTLCSSCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCRYQ 118

Query:   118 SLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDGCT 177
             +LGC DIFPYY KLKHEQHCRFR Y+CPYAGSECSVTGDIPTLV HLKDDH+VDMHDGCT
Sbjct:   119 NLGCQDIFPYYSKLKHEQHCRFRSYSCPYAGSECSVTGDIPTLVDHLKDDHKVDMHDGCT 178

Query:   178 FNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFMGDDDEAKK 237
             FNHRYVKS+P+EVENATWMLTVFNCFGRQFCLHFEAFQLGMA VYMAFLRFMGD++EAKK
Sbjct:   179 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKK 238

Query:   238 FSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLRIT 297
             FSYSLEVGAH R+L WQGIPRSIRDSHRKVRDSQDGLII RN+ALYFSG D+ ELKLR+T
Sbjct:   239 FSYSLEVGAHSRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGSDKEELKLRVT 298

Query:   298 GRIWKEE 304
             GRIWKEE
Sbjct:   299 GRIWKEE 305

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2076810 AT3G61790 [Arabidopsis thaliana (taxid:3702)]

 Score = 1205 (429.2 bits), Expect = 1.5e-122, P = 1.5e-122
 Identities = 216/296 (72%), Positives = 246/296 (83%)

Query:     9 KEVVESDHTVINYDIKAESNTALTKTSFGLGGKQGIYSNNGVHELLECPVCTNLMYPPIH 68
             +E+ +  H+  +      +N   T  +    G   + +   VHELLECPVCTN MYPPIH
Sbjct:    18 EEIHQDRHSYASVSKHHHTNNNTTNVNAAASGL--LPTTTSVHELLECPVCTNSMYPPIH 75

Query:    69 QCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKVAESLELPCKYQSLGCHDIFPYY 128
             QC NGHTLCS CK RVHN CPTCR +LG+IRCLALEKVAESLELPCK+ SLGC +IFPYY
Sbjct:    76 QCHNGHTLCSTCKARVHNRCPTCRQELGDIRCLALEKVAESLELPCKHMSLGCPEIFPYY 135

Query:   129 GKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDGCTFNHRYVKSDPN 188
              KLKHE  C FRPY+CPYAGSECSVTGDIP LVAHL+DDH+VDMH GCTFNHRYVKS+P 
Sbjct:   136 SKLKHETVCNFRPYSCPYAGSECSVTGDIPFLVAHLRDDHKVDMHSGCTFNHRYVKSNPR 195

Query:   189 EVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFMGDDDEAKKFSYSLEVGAHG 248
             EVENATWMLTVF+CFG+ FCLHFEAFQLGMA VYMAFLRFMGD+ EA+ ++YSLEVG +G
Sbjct:   196 EVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYNYSLEVGGYG 255

Query:   249 RRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLRITGRIWKEE 304
             R+LIW+G PRS+RDSHRKVRDS DGLIIQRNMAL+FSGGDR ELKLR+TGRIWKE+
Sbjct:   256 RKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 311

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2137395 AT4G27880 [Arabidopsis thaliana (taxid:3702)]

 Score = 1148 (409.2 bits), Expect = 1.6e-116, P = 1.6e-116
 Identities = 202/255 (79%), Positives = 226/255 (88%)

Query:    50 VHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKVAES 109
             V+ELLECPVCT  MYPPIHQC NGHTLCS CK RVHN CPTCR +LG+IRCLALEKVAES
Sbjct:    58 VYELLECPVCTYSMYPPIHQCHNGHTLCSTCKVRVHNRCPTCRQELGDIRCLALEKVAES 117

Query:   110 LELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQ 169
             LELPCK+ +LGC +IFPYY KLKHE  C FRPY+CPYAGSEC + GDIP LVAHL+DDH+
Sbjct:   118 LELPCKFYNLGCPEIFPYYSKLKHESLCNFRPYSCPYAGSECGIVGDIPFLVAHLRDDHK 177

Query:   170 VDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFM 229
             VDMH G TFNHRYVKS+P EVENATWMLTVF+CFG+ FCLHFEAFQLGM  VYMAFLRFM
Sbjct:   178 VDMHAGSTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMGPVYMAFLRFM 237

Query:   230 GDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDR 289
             GD+++A+ +SYSLEVG  GR+L W+G PRSIRDSHRKVRDS DGLIIQRNMAL+FSGGDR
Sbjct:   238 GDEEDARSYSYSLEVGGSGRKLTWEGTPRSIRDSHRKVRDSNDGLIIQRNMALFFSGGDR 297

Query:   290 TELKLRITGRIWKEE 304
              ELKLR+TG+IWKE+
Sbjct:   298 KELKLRVTGKIWKEQ 312

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2091581 SINA2 "AT3G13672" [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 101/175 (57%), Positives = 140/175 (80%)

Query:   133 HEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDGCTFNHRYVKSDPNEVEN 192
             H ++ + +PYNCP++G++C VTGDI  L+ HL++DH V+M DG +F+HRYV  DP  + +
Sbjct:    42 HIENPKKKPYNCPHSGAKCDVTGDIQRLLLHLRNDHNVEMSDGRSFSHRYVHHDPKHLHH 101

Query:   193 ATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFMGDDDEAKKFSYSLEVGAHGRRLI 252
             ATWMLT+ +C GR+FCL+FEAF L    +YMAF++FMGD++EA  FSYSL+VG +GR+L 
Sbjct:   102 ATWMLTLLDCCGRKFCLYFEAFHLRKTPMYMAFMQFMGDEEEAMSFSYSLQVGGNGRKLT 161

Query:   253 WQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRT---ELKLRITGRIWKEE 304
             WQG+PRSIRDSH+ VRDSQDGLII R +AL+FS  + T   ELKL+++GR+W+E+
Sbjct:   162 WQGVPRSIRDSHKTVRDSQDGLIITRKLALFFSTDNNTTDKELKLKVSGRVWREQ 216

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

MGI|MGI:108064 Siah1a "seven in absentia 1A" [Mus musculus (taxid:10090)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 93/254 (36%), Positives = 140/254 (55%)

Query:    46 SNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEK 105
             SNN +  L ECPVC + + PPI QC +GH +CSNC+ ++  CCPTCR  LG+IR LA+EK
Sbjct:    31 SNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEK 89

Query:   106 VAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLK 165
             VA S+  PCKY S GC    P+  K +HE+ C FRPY+CP  G+ C   G +  ++ HL 
Sbjct:    90 VANSVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 149

Query:   166 DDHQ-VDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQ-LGMALVYM 223
               H+ +    G      ++ +D N      W++ + +CFG  F L  E  +       + 
Sbjct:   150 HQHKSITTLQGEDIV--FLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFF 206

Query:   224 AFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALY 283
             A ++ +G   +A+ F+Y LE+  H RRL W+  PRSI +       + D L+   ++A  
Sbjct:   207 AIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQL 266

Query:   284 FSGGDRTELKLRIT 297
             F+  +   L + +T
Sbjct:   267 FA--ENGNLGINVT 278

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005769 "early endosome" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007141 "male meiosis I" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IMP

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0008270 "zinc ion binding" evidence=ISO;IDA

GO:0009791 "post-embryonic development" evidence=IMP

GO:0016567 "protein ubiquitination" evidence=TAS

GO:0016874 "ligase activity" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0030163 "protein catabolic process" evidence=ISO

GO:0030877 "beta-catenin destruction complex" evidence=ISO

GO:0031648 "protein destabilization" evidence=ISO

GO:0040014 "regulation of multicellular organism growth" evidence=IMP

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO;IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051402 "neuron apoptotic process" evidence=ISO

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=ISO

RGD|620449 Siah1a "seven in absentia 1A" [Rattus norvegicus (taxid:10116)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 93/254 (36%), Positives = 140/254 (55%)

Query:    46 SNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEK 105
             SNN +  L ECPVC + + PPI QC +GH +CSNC+ ++  CCPTCR  LG+IR LA+EK
Sbjct:    31 SNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEK 89

Query:   106 VAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLK 165
             VA S+  PCKY S GC    P+  K +HE+ C FRPY+CP  G+ C   G +  ++ HL 
Sbjct:    90 VANSVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 149

Query:   166 DDHQ-VDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQ-LGMALVYM 223
               H+ +    G      ++ +D N      W++ + +CFG  F L  E  +       + 
Sbjct:   150 HQHKSITTLQGEDIV--FLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFF 206

Query:   224 AFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALY 283
             A ++ +G   +A+ F+Y LE+  H RRL W+  PRSI +       + D L+   ++A  
Sbjct:   207 AIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQL 266

Query:   284 FSGGDRTELKLRIT 297
             F+  +   L + +T
Sbjct:   267 FA--ENGNLGINVT 278

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007049 "cell cycle" evidence=IEA

GO:0007141 "male meiosis I" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA;ISO

GO:0008022 "protein C-terminus binding" evidence=ISO;IPI

GO:0008270 "zinc ion binding" evidence=ISO;ISS

GO:0009791 "post-embryonic development" evidence=ISO

GO:0030154 "cell differentiation" evidence=IEA

GO:0030163 "protein catabolic process" evidence=ISO

GO:0030877 "beta-catenin destruction complex" evidence=ISO;ISS

GO:0031648 "protein destabilization" evidence=IMP

GO:0040014 "regulation of multicellular organism growth" evidence=ISO

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO;ISS;IDA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=IEA;ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;ISS

GO:0051402 "neuron apoptotic process" evidence=IMP

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=IEA;ISO

UNIPROTKB|Q920M9 Siah1 "E3 ubiquitin-protein ligase SIAH1" [Rattus norvegicus (taxid:10116)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 93/254 (36%), Positives = 140/254 (55%)

Query:    46 SNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEK 105
             SNN +  L ECPVC + + PPI QC +GH +CSNC+ ++  CCPTCR  LG+IR LA+EK
Sbjct:    31 SNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEK 89

Query:   106 VAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLK 165
             VA S+  PCKY S GC    P+  K +HE+ C FRPY+CP  G+ C   G +  ++ HL 
Sbjct:    90 VANSVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 149

Query:   166 DDHQ-VDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQ-LGMALVYM 223
               H+ +    G      ++ +D N      W++ + +CFG  F L  E  +       + 
Sbjct:   150 HQHKSITTLQGEDIV--FLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFF 206

Query:   224 AFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALY 283
             A ++ +G   +A+ F+Y LE+  H RRL W+  PRSI +       + D L+   ++A  
Sbjct:   207 AIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQL 266

Query:   284 FSGGDRTELKLRIT 297
             F+  +   L + +T
Sbjct:   267 FA--ENGNLGINVT 278

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1P2G0 SIAH1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 93/254 (36%), Positives = 139/254 (54%)

Query:    46 SNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEK 105
             SNN +  L ECPVC + + PPI QC +GH +CSNC+ ++  CCPTCR  LG+IR LA+EK
Sbjct:    31 SNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEK 89

Query:   106 VAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLK 165
             VA S+  PCKY S GC    P+  K  HE+ C FRPY+CP  G+ C   G +  ++ HL 
Sbjct:    90 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 149

Query:   166 DDHQ-VDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQ-LGMALVYM 223
               H+ +    G      ++ +D N      W++ + +CFG  F L  E  +       + 
Sbjct:   150 HQHKSITTLQGEDIV--FLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFF 206

Query:   224 AFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALY 283
             A ++ +G   +A+ F+Y LE+  H RRL W+  PRSI +       + D L+   ++A  
Sbjct:   207 AIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQL 266

Query:   284 FSGGDRTELKLRIT 297
             F+  +   L + +T
Sbjct:   267 FA--ENGNLGINVT 278

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030877 "beta-catenin destruction complex" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=IEA

UNIPROTKB|F1N5G3 SIAH1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 93/254 (36%), Positives = 139/254 (54%)

Query:    46 SNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEK 105
             SNN +  L ECPVC + + PPI QC +GH +CSNC+ ++  CCPTCR  LG+IR LA+EK
Sbjct:    62 SNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEK 120

Query:   106 VAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLK 165
             VA S+  PCKY S GC    P+  K  HE+ C FRPY+CP  G+ C   G +  ++ HL 
Sbjct:   121 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 180

Query:   166 DDHQ-VDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQ-LGMALVYM 223
               H+ +    G      ++ +D N      W++ + +CFG  F L  E  +       + 
Sbjct:   181 HQHKSITTLQGEDIV--FLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFF 237

Query:   224 AFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALY 283
             A ++ +G   +A+ F+Y LE+  H RRL W+  PRSI +       + D L+   ++A  
Sbjct:   238 AIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQL 297

Query:   284 FSGGDRTELKLRIT 297
             F+  +   L + +T
Sbjct:   298 FA--ENGNLGINVT 309

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q920M9	SIAH1_RAT	6, ., 3, ., 2, ., -	0.3622	0.8157	0.8794	yes	no
Q8T3Y0	SINAL_DROME	6, ., 3, ., 2, ., -	0.3366	0.9243	0.8005	yes	no
Q06985	SIA1B_MOUSE	6, ., 3, ., 2, ., -	0.3582	0.8157	0.8794	yes	no
P93748	SINA1_ARATH	6, ., 3, ., 2, ., -	0.8110	0.9934	0.9901	no	no
Q7ZVG6	SIAH1_DANRE	6, ., 3, ., 2, ., -	0.3582	0.8157	0.8794	yes	no
Q8S3N1	SINA5_ARATH	6, ., 3, ., 2, ., -	0.7706	0.875	0.8608	no	no
Q9M2P4	SINA2_ARATH	6, ., 3, ., 2, ., -	0.8344	1.0	0.9870	yes	no
P61092	SIA1A_MOUSE	6, ., 3, ., 2, ., -	0.3622	0.8157	0.8794	yes	no
Q8IUQ4	SIAH1_HUMAN	6, ., 3, ., 2, ., -	0.3622	0.8157	0.8794	yes	no
Q9STN8	SINA4_ARATH	6, ., 3, ., 2, ., -	0.7660	0.8717	0.8103	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	304
pfam03145	198	pfam03145, Sina, Seven in absentia protein family	5e-83
cd03829	127	cd03829, Sina, Seven in absentia (Sina) protein fa	7e-61
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	9e-05
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	0.003

>gnl|CDD|190542 pfam03145, Sina, Seven in absentia protein family

 Score =  248 bits (635), Expect = 5e-83
 Identities = 82/200 (41%), Positives = 117/200 (58%), Gaps = 2/200 (1%)

Query: 98  IRCLALEKVAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDI 157
           IR LA+EKVA  +  PCK+ +LGC    P   K  HE+ C ++PY CP  G++C   GD 
Sbjct: 1   IRNLAVEKVASKVLFPCKHAALGCPVRLPLQLKDWHEERCEYKPYFCPMPGAKCKWQGDE 60

Query: 158 PTLVAHLKDDHQVDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLG 217
             L+ HL  DH+V   +G  F+  Y+ +  N V   TW++  F+CFGR F L+ E + LG
Sbjct: 61  DDLMPHLTADHKVITTEGGEFDIVYLAAAVNLVGAPTWVMVQFSCFGRHFNLYLEKYDLG 120

Query: 218 MALVYMAFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQ 277
              +Y A ++ +G+  EA+ F+Y LE+G + R+L WQ  PRSIRD H+   D +D LI  
Sbjct: 121 GTQMYFAVIQLIGERKEAENFAYELELGGNRRKLTWQAFPRSIRDDHKFAIDGRDCLIFL 180

Query: 278 RNMALYFSGGDRTELKLRIT 297
           RN A +F+      L  R+T
Sbjct: 181 RNAARFFAEDKN--LHYRVT 198

The seven in absentia (sina) gene was first identified in Drosophila. The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non- neuronal cell type. The Sina protein contains an N-terminal RING finger domain pfam00097. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that thus Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is described in pfam00097, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana. Length = 198

>gnl|CDD|239753 cd03829, Sina, Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins

 Score =  189 bits (482), Expect = 7e-61
 Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 4/130 (3%)

Query: 170 VDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQL-GMALVYMAFLRF 228
           V    G   +  ++ +D N    AT  + + +CFG  F L  E  +L      + AF++ 
Sbjct: 1   VTTLQGE--DIVFLATDINLPG-ATDWVMMQSCFGHHFMLVLEKQELYEGHQQFFAFVQL 57

Query: 229 MGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGD 288
           +G + +A+ F+Y LE+  + RRL W+  PRSIR+ H  V D+ D L+   ++A  FS   
Sbjct: 58  IGTEKQAENFTYRLELNGNRRRLTWEATPRSIREGHASVIDNSDCLVFDTSIAQLFSENG 117

Query: 289 RTELKLRITG 298
              + + I+G
Sbjct: 118 NLGINVTISG 127

Sina, Siah and SINAT5 are RING-containing proteins that function as E3 ubiquitin ligases, acting either as single proteins or as a part of multiprotein complexes. Sina is expressed in many cells in the developing eye but is essential specifically for R7 photoreceptor cell development. Sina cooperates with Phyllopod (Phyl), Ebi and the E2 ubiquitin-conjugating enzyme Ubcd1 to catalyze the ubiquitination and subsequent degradation of Tramtrack (Ttk88); Ttk88 is a transcriptional repressor that blocks photoreceptor differentiation. Similarly, the mammalian homologue Siah1 cooperates with SIP (Siah-interacting protein), Ebi and the adaptor protein Skp1, to target beta-catenin for ubiquitination and degradation via a p53-dependent mechanism. SINAT5 targets NAC1 for ubiquitin-mediated degradation resulting in the downregulation of auxin, a hormone that controls many aspects of plant development. Other targets of Sina family proteins include c-Myb, synaptophysin, group 1 glutamate receptors, promyelocytic leukemia protein, alpha-synuclein, synphilin-1 and alpha-ketoglutarate dehydrogenase, among others. Sina proteins also bind proteins that are not targets for ubiquitination such as Phyl, adenomatous polyposis coli, VAV, BAG-1 and Dab-1. Siah binds to a consensus motif, PXAXVXP, which is present in Siah-binding proteins. Siah is a dimeric protein consisting of an N-terminal RING domain, two zinc finger motifs and a C-terminal substrate-binding domain (SBD); this SBD contains an eight-stranded antiparallel beta-sandwich fold similar to the MATH (meprin and TRAF-C homology) domain. Length = 127

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 39.0 bits (91), Expect = 9e-05
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 52 ELLECPVCTNLMYPPIHQCPNGHTLCSNCKNR---VHNCCPTCR 92
          E LECP+C +L+  P+   P GH  C  C  R     + CP CR
Sbjct: 1  EELECPICLDLLRDPVVLTPCGHVFCRECILRYLKKKSKCPICR 44

Length = 45

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 34.7 bits (80), Expect = 0.003
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 55 ECPVCTNLMYPPIHQCPNGHTLCSNC----KNRVHNCCPTCRFDL 95
          ECP+C      P+   P GH  C +C         N CP CR  +
Sbjct: 1  ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	304
KOG3002	299	consensus Zn finger protein [General function pred	100.0
PF03145	198	Sina: Seven in absentia protein family; InterPro:	100.0
cd03829	127	Sina Seven in absentia (Sina) protein family, C-te	100.0
KOG0297	391	consensus TNF receptor-associated factor [Signal t	99.31
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.49
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.48
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.41
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.39
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.33
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.22
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.1
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.1
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	98.1
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.08
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.04
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.95
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	97.77
PF14634	44	zf-RING_5: zinc-RING finger domain	97.74
PHA02929	238	N1R/p28-like protein; Provisional	97.73
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.72
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	97.68
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.55
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	97.36
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	97.33
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.29
PHA02926	242	zinc finger-like protein; Provisional	97.23
PLN03086	567	PRLI-interacting factor K; Provisional	97.08
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.07
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.01
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	97.0
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	96.97
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	96.9
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	96.84
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	96.68
KOG2660	331	consensus Locus-specific chromosome binding protei	96.04
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	95.87
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	95.82
PLN03086	567	PRLI-interacting factor K; Provisional	95.66
COG5222	427	Uncharacterized conserved protein, contains RING Z	95.64
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	95.51
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	95.46
COG5152	259	Uncharacterized conserved protein, contains RING a	95.46
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	95.42
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	95.4
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.02
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	94.39
COG5175	480	MOT2 Transcriptional repressor [Transcription]	93.77
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	93.55
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	93.53
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	92.92
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	92.67
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	91.93
KOG1002	791	consensus Nucleotide excision repair protein RAD16	91.87
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	91.3
KOG4739	233	consensus Uncharacterized protein involved in syna	90.61
KOG4367	699	consensus Predicted Zn-finger protein [Function un	89.18
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	88.84
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	88.83
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	88.79
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	88.76
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	87.24
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	86.42
COG5236	493	Uncharacterized conserved protein, contains RING Z	86.37
KOG3039	303	consensus Uncharacterized conserved protein [Funct	85.74
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	85.44
KOG0825	1134	consensus PHD Zn-finger protein [General function	85.26
PF04641	260	Rtf2: Rtf2 RING-finger	85.12
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	84.25
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	83.51
PF10083	158	DUF2321: Uncharacterized protein conserved in bact	81.71
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	81.52
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	80.15
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	80.05

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=100.00  E-value=2.1e-52  Score=388.52  Aligned_cols=258  Identities=46%  Similarity=0.816  Sum_probs=242.7

Q ss_pred             cccCCCCeeeecccccccccccccccccCeecccCcccccCCCCCCccCCCCccchHHHHHhhhccccCCCCCCCCcccc
Q 021991           46 SNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKVAESLELPCKYQSLGCHDIF  125 (304)
Q Consensus        46 ~~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~~~~CP~Cr~~~~~~r~~~le~~l~~l~v~C~~~~~GC~~~~  125 (304)
                      ....+.+.|+||||++.+.+||+||+|||+.|++|..++.++||.||.+++++|+++||++++++.++|+|..+||++.+
T Consensus        41 ~~~~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~~R~~amEkV~e~~~vpC~~~~~GC~~~~  120 (299)
T KOG3002|consen   41 VTLLDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGNIRCRAMEKVAEAVLVPCKNAKLGCTKSF  120 (299)
T ss_pred             ccccchhhccCchhhccCcccceecCCCcEehhhhhhhhcccCCccccccccHHHHHHHHHHHhceecccccccCCceee
Confidence            56678899999999999999999999999999999988889999999999999999999999999999999999999999


Q ss_pred             CccchhccccccCcccccCCCCCCCCccccChhhHHHHhhhhCCCCcccceeEEEEEeccCCCcccccceEEEEEeecCc
Q 021991          126 PYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGR  205 (304)
Q Consensus       126 ~~~~~~~He~~C~~~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~~~~~g~~~~~~f~~s~~~~~~~~~~~l~v~~~~g~  205 (304)
                      +|.+..+||+.|.|+|+.||.+|..|+|.|..++|..|++..|+.++..+..++++|..++++.....+|++.+..++++
T Consensus       121 ~Y~~~~~HE~~C~f~~~~CP~p~~~C~~~G~~~~l~~H~~~~hk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (299)
T KOG3002|consen  121 PYGEKSKHEKVCEFRPCSCPVPGAECKYTGSYKDLYAHLNDTHKSDIITLTGFDFVFVATDENLLGAATWTLKTSVCFGR  200 (299)
T ss_pred             ccccccccccccccCCcCCCCCcccCCccCcHHHHHHHHHhhChhhhhhccccceecccCCccccccchhheeeeecCcE
Confidence            99999999999999999999998899999999999999999999988777778889999999988888997777779999


Q ss_pred             eEEEEEeEEeecce-EEEEEEEEEeCCccccCCcEEEEEEeeCCceEEEEeeeeeeeccccccccCCCeEEEeCCcceee
Q 021991          206 QFCLHFEAFQLGMA-LVYMAFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYF  284 (304)
Q Consensus       206 ~F~l~~~~~~~g~~-~~~~a~v~~iG~~~~a~~F~Y~l~~~~~~r~L~~~s~~~si~~~~~~~~~~~d~L~ip~~~~~~f  284 (304)
                      .|.+.+..+..+.. ++|+++++++|.+++|++|+|+|++.+++++|+|++.|+|+++.+...++..|||+||.+++++|
T Consensus       201 ~~~~~~~~q~~~~~~~~y~tv~~i~~~~~e~~~fsy~L~~~~~~~klt~~s~~~s~~~kvs~~~p~~dfm~ip~~~~~~~  280 (299)
T KOG3002|consen  201 EFGLLFEVQCFREPHGVYVTVNRIAPSAPEAGEFSYSLALGGSGRKLTWQSPPRSIIQKVSKVRPEDDFMLIPRSLLCLF  280 (299)
T ss_pred             EEeeeeeehhhcCCCceEEEeehhccCCCcccccceeeecCCCCceEeecCCcceeecccceeccCCCceeccHHHhhcc
Confidence            99999998877444 89999999999999999999999999999999999999999999998999999999999999999


Q ss_pred             ecCCeeeEEEEEEEEeecCC
Q 021991          285 SGGDRTELKLRITGRIWKEE  304 (304)
Q Consensus       285 ~~~~~~~l~l~I~~~i~~~~  304 (304)
                      ..++ ++|.|.+++++|+++
T Consensus       281 ~~~~-~~l~i~~~~~~~~~~  299 (299)
T KOG3002|consen  281 SLLK-MELKIRVTGRVQEEI  299 (299)
T ss_pred             cccC-CceeeccchhhhccC
Confidence            8776 499999999999875

>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila

Probab=100.00  E-value=2.2e-43  Score=312.65  Aligned_cols=198  Identities=43%  Similarity=0.824  Sum_probs=152.5

Q ss_pred             ccchHHHHHhhhccccCCCCCCCCccccCccchhccccccCcccccCCCCCCCCccccChhhHHHHhhhhCCCCccccee
Q 021991           98 IRCLALEKVAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDGCT  177 (304)
Q Consensus        98 ~r~~~le~~l~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~~~~~g~~  177 (304)
                      +||++||++++++++||+|+.+||++.+++.++.+||++|+|+|+.||.++.+|+|.|+.++|..|+..+|++.+..+..
T Consensus         1 iR~~alE~v~~~~~~pC~~~~~GC~~~~~~~~~~~HE~~C~~~p~~CP~~~~~C~~~G~~~~l~~Hl~~~H~~~~~~~~~   80 (198)
T PF03145_consen    1 IRNRALEKVAESIKFPCKNAKYGCTETFPYSEKREHEEECPFRPCSCPFPGSGCDWQGSYKELLDHLRDKHSWNVTDNGT   80 (198)
T ss_dssp             --------------EE-CCGGGT---EE-GGGHHHHHHT-TTSEEE-SSSSTT---EEECCCHHHHHHHHTTTSEEEESS
T ss_pred             CCcHHHHHHHhhceecCCCCCCCCcccccccChhhHhccCCCcCCcCCCCCCCccccCCHHHHHHHHHHHCCCccccCcc
Confidence            48999999999999999999999999999999999999999999999997778999999999999999999998876666


Q ss_pred             EEEEEeccCCCcccccceEEEEEeecCceEEEEEeEEeecceEEEEEEEEEeCCccccCCcEEEEEEeeCCceEEEEeee
Q 021991          178 FNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGMALVYMAFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIP  257 (304)
Q Consensus       178 ~~~~f~~s~~~~~~~~~~~l~v~~~~g~~F~l~~~~~~~g~~~~~~a~v~~iG~~~~a~~F~Y~l~~~~~~r~L~~~s~~  257 (304)
                      +.++|..++....+..+|+++.++|||++|+|+++.+......+|+++|+++|++++|++|+|+|++.+++|+|+||++|
T Consensus        81 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~F~l~~~~~~~~~~~v~~~~v~~~G~~~~a~~f~Yel~~~~~~rkl~~~~~p  160 (198)
T PF03145_consen   81 FSISFLHSDINSVESPDWVLVQFSCFGKLFLLYVQKFELEGNAVYFAVVCYIGPAEEASNFSYELEVRSNGRKLTWQSFP  160 (198)
T ss_dssp             -EEEEEECTTT-SSSEEEEEEE-EETTEEEEEEEEEEEEETEEEEEEEEEESS-HHHHTTEEEEEEEEETTEEEEEEE--
T ss_pred             ceEEEeeecccccCCceEEEeecccCCccEEEEEEEEccCCceEEEEEEEEccCchhhhceEEEEEEecCCcEEEEEEcC
Confidence            77889888877666778987666999999999998887656689999999999999999999999999999999999999


Q ss_pred             eeeeccccccccCCCeEEEeCCcceeeecCCeeeEEEE
Q 021991          258 RSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLR  295 (304)
Q Consensus       258 ~si~~~~~~~~~~~d~L~ip~~~~~~f~~~~~~~l~l~  295 (304)
                      +|++++.+.++++.|||++..+++++|+++++|.|+|+
T Consensus       161 ~si~~~~~~~~~~~d~li~~~~~~~~f~~~~~L~~~v~  198 (198)
T PF03145_consen  161 RSIREDIDDAIESRDCLIINENAAQFFSEDGNLRYRVT  198 (198)
T ss_dssp             EETTT-SHHHHHCT-SEEEEHHHHHHHECTTEEEEEEE
T ss_pred             cchhhhHHhhccCCcEEEEchHHHHhcCCCCeEEEEeC
Confidence            99999999999999999999999999999997666654

The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non-neuronal cell type. The Sina protein contains an N-terminal RING finger domain C3HC4-type. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 [] also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation [, ]. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is a C3HC4-type, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana.; GO: 0006511 ubiquitin-dependent protein catabolic process, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2A25_A 1K2F_B 2AN6_C.

>cd03829 Sina Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins

Probab=100.00  E-value=3e-37  Score=247.10  Aligned_cols=125  Identities=31%  Similarity=0.580  Sum_probs=118.5

Q ss_pred             CcccceeEEEEEeccCCCcccccceEEEEEeecCceEEEEEeEEee-cceEEEEEEEEEeCCccccCCcEEEEEEeeCCc
Q 021991          171 DMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQL-GMALVYMAFLRFMGDDDEAKKFSYSLEVGAHGR  249 (304)
Q Consensus       171 ~~~~g~~~~~~f~~s~~~~~~~~~~~l~v~~~~g~~F~l~~~~~~~-g~~~~~~a~v~~iG~~~~a~~F~Y~l~~~~~~r  249 (304)
                      ++++|+  +++|+++|+++++ +.|++++++|||++|+|+++++++ +.+++|||++++||+..+|.+|+|.|++.+++|
T Consensus         2 ~~~~G~--di~fl~t~~~~~~-a~~w~mv~sCfG~~F~L~~Ek~~l~~~~~~y~A~~~~iG~~~eA~nf~Y~Lel~~n~R   78 (127)
T cd03829           2 TTLQGE--DIVFLATDINLPG-ATDWVMMQSCFGHHFMLVLEKQELYEGHQQFFAFVQLIGTEKQAENFTYRLELNGNRR   78 (127)
T ss_pred             ccccCc--cEEEEecCCCCcc-ceeeeehhhhcCceEEEEEehhhhcCCcHHHHHHHHHHcCHhHHhcceEEEEEcCCCc
Confidence            466788  7799999999887 667778999999999999999999 778999999999999999999999999999999


Q ss_pred             eEEEEeeeeeeeccccccccCCCeEEEeCCcceeeecCCeeeEEEEEEE
Q 021991          250 RLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLRITG  298 (304)
Q Consensus       250 ~L~~~s~~~si~~~~~~~~~~~d~L~ip~~~~~~f~~~~~~~l~l~I~~  298 (304)
                      ||+||++|+||||++.+++++.|||+|..++|+||++||+++|+|+|||
T Consensus        79 kL~we~~PRSIrds~~~~~~~~D~Lii~~~~A~~Fs~~g~l~l~v~It~  127 (127)
T cd03829          79 RLTWEATPRSIREGHASVIDNSDCLVFDTSIAQLFSENGNLGINVTISG  127 (127)
T ss_pred             EEEeecCCccHHHhhHHHhhcCcceEEechHhhhccCCCccEEEEEecC
Confidence            9999999999999999999999999999999999999999999999986

Sina, Siah and SINAT5 are RING-containing proteins that function as E3 ubiquitin ligases, acting either as single proteins or as a part of multiprotein complexes. Sina is expressed in many cells in the developing eye but is essential specifically for R7 photoreceptor cell development. Sina cooperates with Phyllopod (Phyl), Ebi and the E2 ubiquitin-conjugating enzyme Ubcd1 to catalyze the ubiquitination and subsequent degradation of Tramtrack (Ttk88); Ttk88 is a transcriptional repressor that blocks photoreceptor differentiation. Similarly, the mammalian homologue Siah1 cooperates with SIP (Siah-interacting protein), Ebi and the adaptor protein Skp1, to target beta-catenin for ubiquitination and degradation via a p53-dependent mechanism. SINAT5 targets NAC1 for ubiquitin-medi

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=99.31  E-value=2.6e-12  Score=124.98  Aligned_cols=116  Identities=29%  Similarity=0.636  Sum_probs=102.1

Q ss_pred             CCCCeeeecccccccccccc--cccccCeecccCcccc---cCCCCCCccCCCCc----cchHHHHHhhhccccCCCCCC
Q 021991           49 GVHELLECPVCTNLMYPPIH--QCPNGHTLCSNCKNRV---HNCCPTCRFDLGNI----RCLALEKVAESLELPCKYQSL  119 (304)
Q Consensus        49 ~l~~~l~CpIC~~~l~~Pi~--qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~~----r~~~le~~l~~l~v~C~~~~~  119 (304)
                      .+++++.|++|..++.+|+.  +|  ||.||..|+.+.   ...||.|+..+...    ...++.+.+.++.+.|.+...
T Consensus        17 ~~~~~l~C~~C~~vl~~p~~~~~c--gh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~c~~~~~   94 (391)
T KOG0297|consen   17 PLDENLLCPICMSVLRDPVQTTTC--GHRFCAGCLLESLSNHQKCPVCRQELTQAEELPVPRALRRELLKLPIRCIFASR   94 (391)
T ss_pred             CCcccccCccccccccCCCCCCCC--CCcccccccchhhccCcCCcccccccchhhccCchHHHHHHHHhcccccccCCC
Confidence            38889999999999999974  56  999999999876   36899998887542    246788999999999999999


Q ss_pred             CCccccCccchhccccccCcccccCCCCCCCCccccChhhHHHHhhhhCCCC
Q 021991          120 GCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVD  171 (304)
Q Consensus       120 GC~~~~~~~~~~~He~~C~~~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~~  171 (304)
                      ||.|.+.+..++.|+..|  .+..||+.   |+..+.++++..|++......
T Consensus        95 GC~~~~~l~~~~~Hl~~c--~~~~C~~~---C~~~~~~~d~~~hl~~~C~~~  141 (391)
T KOG0297|consen   95 GCRADLELEALQGHLSTC--DPLKCPHR---CGVQVPRDDLEDHLEAECPRR  141 (391)
T ss_pred             CccccccHHHHHhHhccC--CcccCccc---cccccchHHHHHHHhcccccc
Confidence            999999999999999999  99999983   999999999999998776643

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.49  E-value=3e-08  Score=66.31  Aligned_cols=34  Identities=41%  Similarity=1.266  Sum_probs=25.5

Q ss_pred             eccccccccccc-ccccccCeecccCccccc-------CCCCCC
Q 021991           56 CPVCTNLMYPPI-HQCPNGHTLCSNCKNRVH-------NCCPTC   91 (304)
Q Consensus        56 CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~-------~~CP~C   91 (304)
                      ||||+++|++|+ +.|  ||+||..|+.++.       ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~C--GH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPC--GHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SS--SSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCC--cCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            899999999997 677  9999999998651       358876

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.48  E-value=5.6e-08  Score=94.29  Aligned_cols=71  Identities=27%  Similarity=0.547  Sum_probs=54.2

Q ss_pred             cccCCCCCcccccccCCCCeeeeccccccccccc-ccccccCeecccCcccc---cCCCCCCccCCCC---ccchHHHHH
Q 021991           34 TSFGLGGKQGIYSNNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN---IRCLALEKV  106 (304)
Q Consensus        34 ~~~~~~~~~~~~~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~  106 (304)
                      +|.+|.    ++.+..+.+.+.|+||.+++..|+ ..|  ||.||..|+..+   ...||.|+..+..   .+|.+++++
T Consensus        11 Dw~~t~----~~~l~~Le~~l~C~IC~d~~~~PvitpC--gH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~i   84 (397)
T TIGR00599        11 DWLTTP----IPSLYPLDTSLRCHICKDFFDVPVLTSC--SHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEI   84 (397)
T ss_pred             hhccCC----cccccccccccCCCcCchhhhCccCCCC--CCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHH
Confidence            476552    244578999999999999999997 456  999999999854   3579999998764   356777666


Q ss_pred             hhhc
Q 021991          107 AESL  110 (304)
Q Consensus       107 l~~l  110 (304)
                      ++.+
T Consensus        85 Ve~~   88 (397)
T TIGR00599        85 VESF   88 (397)
T ss_pred             HHHH
Confidence            6543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.41  E-value=5.5e-08  Score=70.24  Aligned_cols=56  Identities=27%  Similarity=0.654  Sum_probs=30.4

Q ss_pred             CCCCeeeeccccccccccc--ccccccCeecccCcccc-cCCCCCCccCCCC---ccchHHHHH
Q 021991           49 GVHELLECPVCTNLMYPPI--HQCPNGHTLCSNCKNRV-HNCCPTCRFDLGN---IRCLALEKV  106 (304)
Q Consensus        49 ~l~~~l~CpIC~~~l~~Pi--~qC~~GH~fC~~C~~~~-~~~CP~Cr~~~~~---~r~~~le~~  106 (304)
                      .+.+.|.|++|.++|+.|+  ..|  .|+||+.|+..- ...||+|+.+...   ..|+.++.+
T Consensus         3 ~le~lLrCs~C~~~l~~pv~l~~C--eH~fCs~Ci~~~~~~~CPvC~~Paw~qD~~~NrqLd~~   64 (65)
T PF14835_consen    3 RLEELLRCSICFDILKEPVCLGGC--EHIFCSSCIRDCIGSECPVCHTPAWIQDIQINRQLDSM   64 (65)
T ss_dssp             HHHHTTS-SSS-S--SS-B---SS--S--B-TTTGGGGTTTB-SSS--B-S-SS----HHHHHH
T ss_pred             HHHHhcCCcHHHHHhcCCceeccC--ccHHHHHHhHHhcCCCCCCcCChHHHHHHHhhhhhhcc
Confidence            4567789999999999997  356  999999999864 4679999998532   346666554

>smart00504 Ubox Modified RING finger domain

Probab=98.39  E-value=1.7e-07  Score=67.32  Aligned_cols=56  Identities=25%  Similarity=0.404  Sum_probs=44.7

Q ss_pred             eeeecccccccccccccccccCeecccCcccc---cCCCCCCccCCCC---ccchHHHHHhhh
Q 021991           53 LLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN---IRCLALEKVAES  109 (304)
Q Consensus        53 ~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~l~~  109 (304)
                      .|.||||.+++.+|+. -++||+||..|+.++   ...||.|+.++..   .++..+++.+++
T Consensus         1 ~~~Cpi~~~~~~~Pv~-~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~   62 (63)
T smart00504        1 EFLCPISLEVMKDPVI-LPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQE   62 (63)
T ss_pred             CcCCcCCCCcCCCCEE-CCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHh
Confidence            3679999999999973 234999999999865   4689999999853   567778777654

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.33  E-value=6.6e-08  Score=90.39  Aligned_cols=65  Identities=31%  Similarity=0.670  Sum_probs=52.8

Q ss_pred             cccccCCCCeeeeccccccccccc-ccccccCeecccCcccc---cCCCCCCccCCCC---ccchHHHHHhhhc
Q 021991           44 IYSNNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN---IRCLALEKVAESL  110 (304)
Q Consensus        44 ~~~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~l~~l  110 (304)
                      ++++..+++.|.|.||+++|..|+ ..|  ||.||+-||.+.   ...||.|+.++..   ..|+.++.++.++
T Consensus        14 ipslk~lD~lLRC~IC~eyf~ip~itpC--sHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~   85 (442)
T KOG0287|consen   14 IPSLKTLDDLLRCGICFEYFNIPMITPC--SHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKSL   85 (442)
T ss_pred             CchhhhhHHHHHHhHHHHHhcCceeccc--cchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHHH
Confidence            677788999999999999999996 566  999999999875   4789999998864   3455666666554

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.22  E-value=4.2e-07  Score=79.75  Aligned_cols=47  Identities=26%  Similarity=0.754  Sum_probs=38.3

Q ss_pred             CCCCeeeeccccccccccc-ccccccCeecccCcccc-------------------cCCCCCCccCCCC
Q 021991           49 GVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV-------------------HNCCPTCRFDLGN   97 (304)
Q Consensus        49 ~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~-------------------~~~CP~Cr~~~~~   97 (304)
                      ++.+.+.|+||.+.+++|+ ..|  ||.||..|+.++                   ...||.||.++..
T Consensus        14 ~~~~~~~CpICld~~~dPVvT~C--GH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~   80 (193)
T PLN03208         14 DSGGDFDCNICLDQVRDPVVTLC--GHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE   80 (193)
T ss_pred             cCCCccCCccCCCcCCCcEEcCC--CchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence            4456789999999999997 456  999999999754                   1479999998753

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=1.3e-06  Score=78.17  Aligned_cols=48  Identities=23%  Similarity=0.631  Sum_probs=40.5

Q ss_pred             CCCCeeeecccccccccccccccccCeecccCcccc------cCCCCCCccCCCC
Q 021991           49 GVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV------HNCCPTCRFDLGN   97 (304)
Q Consensus        49 ~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~------~~~CP~Cr~~~~~   97 (304)
                      .....|+|.||++..++||+.| |||+||=.|+.+|      .+.||+|+..++.
T Consensus        43 ~~~~~FdCNICLd~akdPVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~   96 (230)
T KOG0823|consen   43 RDGGFFDCNICLDLAKDPVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI   96 (230)
T ss_pred             CCCCceeeeeeccccCCCEEee-cccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence            4567899999999999998543 3999999999987      3679999998764

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=1.2e-06  Score=75.47  Aligned_cols=46  Identities=30%  Similarity=0.764  Sum_probs=35.7

Q ss_pred             CCeeeeccccccccccc-ccccccCeecccCcccc---cCCCCCCccCCC
Q 021991           51 HELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLG   96 (304)
Q Consensus        51 ~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~   96 (304)
                      ...+.||||++.+..-+ +.-.|||+||+.|+...   ...||+|++.++
T Consensus       129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt  178 (187)
T KOG0320|consen  129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT  178 (187)
T ss_pred             ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence            45589999999988443 32333999999999864   478999998765

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=98.10  E-value=7e-07  Score=63.77  Aligned_cols=54  Identities=26%  Similarity=0.516  Sum_probs=38.8

Q ss_pred             hhccccCCCCCCCCccccCccchhcccc-ccCcccccCCCCCCCCccccChhhHHHH
Q 021991          108 ESLELPCKYQSLGCHDIFPYYGKLKHEQ-HCRFRPYNCPYAGSECSVTGDIPTLVAH  163 (304)
Q Consensus       108 ~~l~v~C~~~~~GC~~~~~~~~~~~He~-~C~~~p~~CP~~g~~C~~~g~~~~L~~H  163 (304)
                      ....+.|+|.  ||...++..++.+|.+ +|+++++.||+...||++.+.+.+|..|
T Consensus         6 ~~~~v~C~~~--cc~~~i~r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~~~l~~H   60 (60)
T PF02176_consen    6 PFRPVPCPNG--CCNEMIPRKELDDHLENECPKRPVPCPYSPYGCKERVPREDLEEH   60 (60)
T ss_dssp             TTSEEE-TT----S-BEEECCCHHHHHHTTSTTSEEE-SS----S--EEEHHHHHHC
T ss_pred             CCCEeeCCCC--CcccceeHHHHHHHHHccCCCCcEECCCCCCCCCCccchhHHhCC
Confidence            3467899983  6677899999999998 9999999999977789999999999887

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.08  E-value=8.6e-07  Score=58.08  Aligned_cols=36  Identities=33%  Similarity=1.047  Sum_probs=27.2

Q ss_pred             ecccccccccccccccccCeecccCcccc---cCCCCCC
Q 021991           56 CPVCTNLMYPPIHQCPNGHTLCSNCKNRV---HNCCPTC   91 (304)
Q Consensus        56 CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~---~~~CP~C   91 (304)
                      |+||.+.+.+|++.-++||+||..|+.++   ..+||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            89999999999533333999999999865   4678876

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.04  E-value=9.6e-07  Score=60.99  Aligned_cols=42  Identities=33%  Similarity=0.860  Sum_probs=34.6

Q ss_pred             eeeeccccccccccc-ccccccCe-ecccCcccc---cCCCCCCccCCC
Q 021991           53 LLECPVCTNLMYPPI-HQCPNGHT-LCSNCKNRV---HNCCPTCRFDLG   96 (304)
Q Consensus        53 ~l~CpIC~~~l~~Pi-~qC~~GH~-fC~~C~~~~---~~~CP~Cr~~~~   96 (304)
                      +..|+||++...+++ +.|  ||. ||..|..++   ...||.||+++.
T Consensus         2 ~~~C~iC~~~~~~~~~~pC--gH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPC--GHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETT--CEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCCceEEeCC--CChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            467999999999886 567  999 999999976   478999999875

...

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.95  E-value=2.9e-06  Score=63.44  Aligned_cols=60  Identities=28%  Similarity=0.413  Sum_probs=43.4

Q ss_pred             CCCeeeecccccccccccccccccCeecccCcccc----cCCCCCCccCCCC---ccchHHHHHhhhc
Q 021991           50 VHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN---IRCLALEKVAESL  110 (304)
Q Consensus        50 l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~---~r~~~le~~l~~l  110 (304)
                      +++.|.|||+.++|.+|+.. +.||+|++.++.++    ...||.++.++..   .+|.+|++.++++
T Consensus         1 iP~~f~CpIt~~lM~dPVi~-~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~   67 (73)
T PF04564_consen    1 IPDEFLCPITGELMRDPVIL-PSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEW   67 (73)
T ss_dssp             SSGGGB-TTTSSB-SSEEEE-TTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHH
T ss_pred             CCcccCCcCcCcHhhCceeC-CcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHH
Confidence            35789999999999999732 34999999999876    3569999998865   5788888887765

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=97.77  E-value=4.8e-06  Score=55.85  Aligned_cols=38  Identities=34%  Similarity=0.885  Sum_probs=29.4

Q ss_pred             eeccccccccc--ccccccccCeecccCcccc---cCCCCCCc
Q 021991           55 ECPVCTNLMYP--PIHQCPNGHTLCSNCKNRV---HNCCPTCR   92 (304)
Q Consensus        55 ~CpIC~~~l~~--Pi~qC~~GH~fC~~C~~~~---~~~CP~Cr   92 (304)
                      .|+||.+.+.+  .++..++||.||..|+.++   ..+||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            59999999963  3444445999999999976   47899996

...

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=97.74  E-value=7.4e-06  Score=55.12  Aligned_cols=37  Identities=32%  Similarity=0.936  Sum_probs=29.8

Q ss_pred             eecccccccc---ccc-ccccccCeecccCccccc---CCCCCCcc
Q 021991           55 ECPVCTNLMY---PPI-HQCPNGHTLCSNCKNRVH---NCCPTCRF   93 (304)
Q Consensus        55 ~CpIC~~~l~---~Pi-~qC~~GH~fC~~C~~~~~---~~CP~Cr~   93 (304)
                      +|++|++.+.   .|. ..|  ||+||..|+.+..   ..||.|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~C--gH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSC--GHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEccc--CCHHHHHHHHhhcCCCCCCcCCCC
Confidence            4999999992   343 577  9999999999764   68999974

>PHA02929 N1R/p28-like protein; Provisional

Probab=97.73  E-value=9.1e-06  Score=74.00  Aligned_cols=47  Identities=28%  Similarity=0.632  Sum_probs=35.5

Q ss_pred             CCeeeecccccccccc-c------ccccccCeecccCcccc---cCCCCCCccCCCC
Q 021991           51 HELLECPVCTNLMYPP-I------HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN   97 (304)
Q Consensus        51 ~~~l~CpIC~~~l~~P-i------~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~   97 (304)
                      .+...|+||.+.+.++ +      ...+|||.||..|+.++   ...||.||.++..
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~  228 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFIS  228 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeE
Confidence            4457899999987653 1      12233999999999876   4789999998764

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.72  E-value=6.6e-06  Score=75.77  Aligned_cols=51  Identities=39%  Similarity=0.820  Sum_probs=43.7

Q ss_pred             cccccCCCCeeeeccccccccccc-ccccccCeecccCcccc---cCCCCCCccCCC
Q 021991           44 IYSNNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLG   96 (304)
Q Consensus        44 ~~~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~   96 (304)
                      ++.+..+...+.|-||.+.++.|+ ..|  ||.||+-||.++   ...||.||.+..
T Consensus        16 IPSL~~LDs~lrC~IC~~~i~ip~~TtC--gHtFCslCIR~hL~~qp~CP~Cr~~~~   70 (391)
T COG5432          16 IPSLKGLDSMLRCRICDCRISIPCETTC--GHTFCSLCIRRHLGTQPFCPVCREDPC   70 (391)
T ss_pred             CcchhcchhHHHhhhhhheeecceeccc--ccchhHHHHHHHhcCCCCCccccccHH
Confidence            466678889999999999999996 567  999999999876   478999998754

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.68  E-value=1.2e-05  Score=52.91  Aligned_cols=34  Identities=35%  Similarity=1.105  Sum_probs=28.5

Q ss_pred             eccccccccccc--ccccccCeecccCcccc-----cCCCCCC
Q 021991           56 CPVCTNLMYPPI--HQCPNGHTLCSNCKNRV-----HNCCPTC   91 (304)
Q Consensus        56 CpIC~~~l~~Pi--~qC~~GH~fC~~C~~~~-----~~~CP~C   91 (304)
                      |+||.+.+..|+  ..|  ||.||..|+.++     ...||.|
T Consensus         1 C~iC~~~~~~~~~~~~C--~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPC--GHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTT--SEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecC--CCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999997  467  999999999865     2568876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=2.7e-05  Score=70.57  Aligned_cols=68  Identities=28%  Similarity=0.566  Sum_probs=51.5

Q ss_pred             cccCCCCeeeeccccccccccc-ccccccCeecccCccccc---CCCCCCccCCC-CccchHHHHHhhhccccCC
Q 021991           46 SNNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRVH---NCCPTCRFDLG-NIRCLALEKVAESLELPCK  115 (304)
Q Consensus        46 ~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~---~~CP~Cr~~~~-~~r~~~le~~l~~l~v~C~  115 (304)
                      ....+.+.+.|+||.+.+..|. ..|  ||.||..|+....   ..||.||.... ..+|..+.+++..++....
T Consensus         6 ~~~~~~~~~~C~iC~~~~~~p~~l~C--~H~~c~~C~~~~~~~~~~Cp~cr~~~~~~~~n~~l~~~~~~~~~~~~   78 (386)
T KOG2177|consen    6 LLEVLQEELTCPICLEYFREPVLLPC--GHNFCRACLTRSWEGPLSCPVCRPPSRNLRPNVLLANLVERLRQLRL   78 (386)
T ss_pred             hhhhccccccChhhHHHhhcCccccc--cchHhHHHHHHhcCCCcCCcccCCchhccCccHHHHHHHHHHHhcCC
Confidence            3456778999999999999994 568  9999999998764   68999995211 1356777777776665443

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=97.36  E-value=5.5e-05  Score=49.50  Aligned_cols=40  Identities=38%  Similarity=0.985  Sum_probs=30.4

Q ss_pred             eecccccccccccccccccCeecccCcccc----cCCCCCCccC
Q 021991           55 ECPVCTNLMYPPIHQCPNGHTLCSNCKNRV----HNCCPTCRFD   94 (304)
Q Consensus        55 ~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~----~~~CP~Cr~~   94 (304)
                      .|+||.+.+..++..-++||.||..|+.++    ...||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence            499999999777522223999999999854    3579999875

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=5.3e-05  Score=69.96  Aligned_cols=45  Identities=27%  Similarity=0.648  Sum_probs=37.8

Q ss_pred             CCeeeeccccccccccc-ccccccCeecccCcccc---cCCCCCCccCCCC
Q 021991           51 HELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN   97 (304)
Q Consensus        51 ~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~   97 (304)
                      .....|.+|++...+|. ..|  ||+||-+|+..+   ...||.||..+..
T Consensus       237 ~a~~kC~LCLe~~~~pSaTpC--GHiFCWsCI~~w~~ek~eCPlCR~~~~p  285 (293)
T KOG0317|consen  237 EATRKCSLCLENRSNPSATPC--GHIFCWSCILEWCSEKAECPLCREKFQP  285 (293)
T ss_pred             CCCCceEEEecCCCCCCcCcC--cchHHHHHHHHHHccccCCCcccccCCC
Confidence            34578999999999995 566  999999999876   4679999998764

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.29  E-value=4.4e-05  Score=51.26  Aligned_cols=26  Identities=35%  Similarity=1.242  Sum_probs=16.8

Q ss_pred             eccccccccc----cc-ccccccCeecccCcccc
Q 021991           56 CPVCTNLMYP----PI-HQCPNGHTLCSNCKNRV   84 (304)
Q Consensus        56 CpIC~~~l~~----Pi-~qC~~GH~fC~~C~~~~   84 (304)
                      ||||.+ +..    |+ +.|  ||+||..|+.++
T Consensus         1 CpIc~e-~~~~~n~P~~L~C--GH~~c~~cl~~l   31 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPC--GHVFCKDCLQKL   31 (43)
T ss_dssp             -TTT-----TTSS-EEE-SS--S-EEEHHHHHHH
T ss_pred             CCcccc-ccCCCCCCEEEeC--ccHHHHHHHHHH
Confidence            899999 776    76 677  999999999876

>PHA02926 zinc finger-like protein; Provisional

Probab=97.23  E-value=5.5e-05  Score=67.60  Aligned_cols=47  Identities=34%  Similarity=0.835  Sum_probs=35.3

Q ss_pred             CCCCeeeeccccccccc---------ccc-cccccCeecccCccccc---------CCCCCCccCCCC
Q 021991           49 GVHELLECPVCTNLMYP---------PIH-QCPNGHTLCSNCKNRVH---------NCCPTCRFDLGN   97 (304)
Q Consensus        49 ~l~~~l~CpIC~~~l~~---------Pi~-qC~~GH~fC~~C~~~~~---------~~CP~Cr~~~~~   97 (304)
                      ...+..+|+||++....         +++ .|  +|.||..|+.++.         ..||.||..+..
T Consensus       166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~C--nHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~  231 (242)
T PHA02926        166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSC--NHIFCITCINIWHRTRRETGASDNCPICRTRFRN  231 (242)
T ss_pred             hccCCCCCccCccccccccccccccccccCCC--CchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence            34556889999998643         222 45  9999999999763         249999998764

>PLN03086 PRLI-interacting factor K; Provisional

Probab=97.08  E-value=0.00039  Score=70.48  Aligned_cols=107  Identities=19%  Similarity=0.436  Sum_probs=64.9

Q ss_pred             cCCCCeeeecccccccccccc-----cccccCeeccc--Ccccc-------cCCCCCCccCCCCccchHHHHHhh--hcc
Q 021991           48 NGVHELLECPVCTNLMYPPIH-----QCPNGHTLCSN--CKNRV-------HNCCPTCRFDLGNIRCLALEKVAE--SLE  111 (304)
Q Consensus        48 ~~l~~~l~CpIC~~~l~~Pi~-----qC~~GH~fC~~--C~~~~-------~~~CP~Cr~~~~~~r~~~le~~l~--~l~  111 (304)
                      +...+...|+.|......--+     .|..--+.|..  |....       ...|+.|...+..   ..+++-..  ..+
T Consensus       402 s~~~~~V~C~NC~~~i~l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~Cgk~f~~---s~LekH~~~~Hkp  478 (567)
T PLN03086        402 SMDVDTVECRNCKHYIPSRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCGQAFQQ---GEMEKHMKVFHEP  478 (567)
T ss_pred             cCCCCeEECCCCCCccchhHHHHHHhhCCCcceeCCcccccceeeccccccCccCCCCCCccch---HHHHHHHHhcCCC
Confidence            344566789999987664321     46554455553  54432       2468888776642   12222221  355


Q ss_pred             ccCCCCCCCCccccCccchhcccc-ccCcccccCCCCCCCCccccC-----------hhhHHHHhhh
Q 021991          112 LPCKYQSLGCHDIFPYYGKLKHEQ-HCRFRPYNCPYAGSECSVTGD-----------IPTLVAHLKD  166 (304)
Q Consensus       112 v~C~~~~~GC~~~~~~~~~~~He~-~C~~~p~~CP~~g~~C~~~g~-----------~~~L~~Hl~~  166 (304)
                      +.|+     |+..+...++..|.. .|+.+++.|++    |+....           ...|..|...
T Consensus       479 v~Cp-----Cg~~~~R~~L~~H~~thCp~Kpi~C~f----C~~~v~~g~~~~d~~d~~s~Lt~HE~~  536 (567)
T PLN03086        479 LQCP-----CGVVLEKEQMVQHQASTCPLRLITCRF----CGDMVQAGGSAMDVRDRLRGMSEHESI  536 (567)
T ss_pred             ccCC-----CCCCcchhHHHhhhhccCCCCceeCCC----CCCccccCccccchhhhhhhHHHHHHh
Confidence            6775     766777777788864 68888888886    766553           2367777665

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.07  E-value=0.00029  Score=66.26  Aligned_cols=43  Identities=33%  Similarity=0.771  Sum_probs=31.9

Q ss_pred             eeeeccccc--cccccc---ccccccCeecccCcccc----cCCCCCCccCCC
Q 021991           53 LLECPVCTN--LMYPPI---HQCPNGHTLCSNCKNRV----HNCCPTCRFDLG   96 (304)
Q Consensus        53 ~l~CpIC~~--~l~~Pi---~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~   96 (304)
                      ...||+|..  ++.+-.   +. +|||.||.+|+..+    ...||.|+.++.
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~~~~~CP~C~~~lr   54 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRGSGSCPECDTPLR   54 (309)
T ss_pred             CCCCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhcCCCCCCCCCCCccc
Confidence            357999999  444432   22 34999999999874    357999998764

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.01  E-value=0.00011  Score=75.64  Aligned_cols=49  Identities=31%  Similarity=0.803  Sum_probs=41.5

Q ss_pred             ccCCCCeeeeccccccccccc-ccccccCeecccCcccc----cCCCCCCccCCCC
Q 021991           47 NNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN   97 (304)
Q Consensus        47 ~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~   97 (304)
                      +....+.|.||+|..=.++.| ..|  ||.||..|+.+.    ..+||.|..+|+.
T Consensus       637 lk~yK~~LkCs~Cn~R~Kd~vI~kC--~H~FC~~Cvq~r~etRqRKCP~Cn~aFga  690 (698)
T KOG0978|consen  637 LKEYKELLKCSVCNTRWKDAVITKC--GHVFCEECVQTRYETRQRKCPKCNAAFGA  690 (698)
T ss_pred             HHHHHhceeCCCccCchhhHHHHhc--chHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence            345689999999998888875 578  999999999864    4789999999875

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=97.00  E-value=0.00075  Score=57.39  Aligned_cols=26  Identities=27%  Similarity=0.640  Sum_probs=22.1

Q ss_pred             cCCCCCCCCccccChhhHHHHhhhhCCC
Q 021991          143 NCPYAGSECSVTGDIPTLVAHLKDDHQV  170 (304)
Q Consensus       143 ~CP~~g~~C~~~g~~~~L~~Hl~~~H~~  170 (304)
                      .|+..  +|.|.|.+.+|.+|.+.+|..
T Consensus       109 sC~~e--~C~F~GtY~eLrKHar~~HP~  134 (162)
T PF07800_consen  109 SCSQE--SCSFSGTYSELRKHARSEHPS  134 (162)
T ss_pred             cCccc--ccccccCHHHHHHHHHhhCCC
Confidence            45553  599999999999999999984

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>smart00184 RING Ring finger

Probab=96.97  E-value=0.0002  Score=45.10  Aligned_cols=34  Identities=41%  Similarity=1.216  Sum_probs=27.3

Q ss_pred             eccccccccccc-ccccccCeecccCcccc----cCCCCCC
Q 021991           56 CPVCTNLMYPPI-HQCPNGHTLCSNCKNRV----HNCCPTC   91 (304)
Q Consensus        56 CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~----~~~CP~C   91 (304)
                      |+||.+....++ ..|  ||.||..|+.++    ...||.|
T Consensus         1 C~iC~~~~~~~~~~~C--~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPC--GHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecC--CChHHHHHHHHHHHhCcCCCCCC
Confidence            789999987775 566  999999999854    3568876

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.90  E-value=4.9e-05  Score=71.88  Aligned_cols=51  Identities=29%  Similarity=0.662  Sum_probs=42.0

Q ss_pred             cccCCCCeeeecccccccccccc--cccccCeecccCcccc----cCCCCCCccCCCCc
Q 021991           46 SNNGVHELLECPVCTNLMYPPIH--QCPNGHTLCSNCKNRV----HNCCPTCRFDLGNI   98 (304)
Q Consensus        46 ~~~~l~~~l~CpIC~~~l~~Pi~--qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~~   98 (304)
                      -+..+...+.||||+++++..+.  .|  +|.||..|+-+.    .+.||+||+.+...
T Consensus        36 ~l~~~~~~v~c~icl~llk~tmttkeC--lhrfc~~ci~~a~r~gn~ecptcRk~l~Sk   92 (381)
T KOG0311|consen   36 DLAMFDIQVICPICLSLLKKTMTTKEC--LHRFCFDCIWKALRSGNNECPTCRKKLVSK   92 (381)
T ss_pred             cHHHhhhhhccHHHHHHHHhhcccHHH--HHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence            34567888999999999997763  56  999999999864    48999999988653

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.84  E-value=0.0003  Score=69.61  Aligned_cols=43  Identities=30%  Similarity=0.834  Sum_probs=35.3

Q ss_pred             eeeeccccccccccc-ccccccCeecccCcccc--------cCCCCCCccCCCC
Q 021991           53 LLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV--------HNCCPTCRFDLGN   97 (304)
Q Consensus        53 ~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~--------~~~CP~Cr~~~~~   97 (304)
                      ...||||++...-|. ..|  ||+||-.|+-..        -..||.|+..+..
T Consensus       186 ~~~CPICL~~~~~p~~t~C--GHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNC--GHIFCGPCILQYWNYSAIKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCCCccccccc--CceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence            678999999988775 556  999999998753        2689999998764

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.00058  Score=62.47  Aligned_cols=44  Identities=27%  Similarity=0.575  Sum_probs=36.4

Q ss_pred             CCeeeeccccccccccc-ccccccCeecccCccc-c----cCCCCCCccCCC
Q 021991           51 HELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNR-V----HNCCPTCRFDLG   96 (304)
Q Consensus        51 ~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~-~----~~~CP~Cr~~~~   96 (304)
                      ..++.|++|.+....|. ..|  ||+||-.|+-. +    ...||.||....
T Consensus       213 ~~d~kC~lC~e~~~~ps~t~C--gHlFC~~Cl~~~~t~~k~~~CplCRak~~  262 (271)
T COG5574         213 LADYKCFLCLEEPEVPSCTPC--GHLFCLSCLLISWTKKKYEFCPLCRAKVY  262 (271)
T ss_pred             ccccceeeeecccCCcccccc--cchhhHHHHHHHHHhhccccCchhhhhcc
Confidence            56789999999999996 466  99999999876 3    256999998653

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=96.04  E-value=0.0016  Score=61.42  Aligned_cols=49  Identities=22%  Similarity=0.665  Sum_probs=41.1

Q ss_pred             ccCCCCeeeeccccccccccc--ccccccCeecccCcccc---cCCCCCCccCCCC
Q 021991           47 NNGVHELLECPVCTNLMYPPI--HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN   97 (304)
Q Consensus        47 ~~~l~~~l~CpIC~~~l~~Pi--~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~   97 (304)
                      ..++.....|.+|..+|.++.  ..|  =|+||++|+-+.   .+.||.|...+..
T Consensus         9 ~~~~n~~itC~LC~GYliDATTI~eC--LHTFCkSCivk~l~~~~~CP~C~i~ih~   62 (331)
T KOG2660|consen    9 LTELNPHITCRLCGGYLIDATTITEC--LHTFCKSCIVKYLEESKYCPTCDIVIHK   62 (331)
T ss_pred             hhhcccceehhhccceeecchhHHHH--HHHHHHHHHHHHHHHhccCCccceeccC
Confidence            456778889999999999995  467  899999999865   4899999987753

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.87  E-value=0.006  Score=56.22  Aligned_cols=44  Identities=32%  Similarity=0.670  Sum_probs=35.0

Q ss_pred             CCeeeeccccccccccc-cc-ccccCeecccCcccc-----cCCCCCCccCCC
Q 021991           51 HELLECPVCTNLMYPPI-HQ-CPNGHTLCSNCKNRV-----HNCCPTCRFDLG   96 (304)
Q Consensus        51 ~~~l~CpIC~~~l~~Pi-~q-C~~GH~fC~~C~~~~-----~~~CP~Cr~~~~   96 (304)
                      ...-+||+|.+....|. .+ |  ||++|-.|+...     .-.||.|..+..
T Consensus       237 t~~~~C~~Cg~~PtiP~~~~~C--~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  237 TSDTECPVCGEPPTIPHVIGKC--GHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             cCCceeeccCCCCCCCeeeccc--cceeehhhhhhhhcchhhcccCccCCCCc
Confidence            34568999999999994 45 6  999999999864     248999987643

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.82  E-value=0.0029  Score=47.20  Aligned_cols=37  Identities=35%  Similarity=0.967  Sum_probs=27.4

Q ss_pred             eccccccccccccc-------c-----cccCeecccCcccc---cCCCCCCc
Q 021991           56 CPVCTNLMYPPIHQ-------C-----PNGHTLCSNCKNRV---HNCCPTCR   92 (304)
Q Consensus        56 CpIC~~~l~~Pi~q-------C-----~~GH~fC~~C~~~~---~~~CP~Cr   92 (304)
                      |+||++.|.+|...       |     .|||.|-..|+.++   ...||.||
T Consensus        22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            99999999544211       1     24999999999976   47899997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PLN03086 PRLI-interacting factor K; Provisional

Probab=95.66  E-value=0.029  Score=57.12  Aligned_cols=43  Identities=26%  Similarity=0.465  Sum_probs=22.7

Q ss_pred             CccccCccchhccccccCcccccCCCCCCCCccccChhhHHHHhhhhCC
Q 021991          121 CHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQ  169 (304)
Q Consensus       121 C~~~~~~~~~~~He~~C~~~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~  169 (304)
                      |+..++..+++.|++.| +.++.||     |+....+.+|..|+...++
T Consensus       459 Cgk~f~~s~LekH~~~~-Hkpv~Cp-----Cg~~~~R~~L~~H~~thCp  501 (567)
T PLN03086        459 CGQAFQQGEMEKHMKVF-HEPLQCP-----CGVVLEKEQMVQHQASTCP  501 (567)
T ss_pred             CCCccchHHHHHHHHhc-CCCccCC-----CCCCcchhHHHhhhhccCC
Confidence            55555555555565555 4555555     4444445555555544333

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.64  E-value=0.0043  Score=57.75  Aligned_cols=40  Identities=38%  Similarity=1.017  Sum_probs=33.7

Q ss_pred             eeecccccccccccc-cccccCeecccCcccc----cCCCCCCccC
Q 021991           54 LECPVCTNLMYPPIH-QCPNGHTLCSNCKNRV----HNCCPTCRFD   94 (304)
Q Consensus        54 l~CpIC~~~l~~Pi~-qC~~GH~fC~~C~~~~----~~~CP~Cr~~   94 (304)
                      |.||.|..+++.|+- .| |||.||..|+...    ...||.|...
T Consensus       275 LkCplc~~Llrnp~kT~c-C~~~fc~eci~~al~dsDf~CpnC~rk  319 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPC-CGHTFCDECIGTALLDSDFKCPNCSRK  319 (427)
T ss_pred             ccCcchhhhhhCcccCcc-ccchHHHHHHhhhhhhccccCCCcccc
Confidence            899999999999973 34 5999999999853    3689999773

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.51  E-value=0.0016  Score=45.61  Aligned_cols=41  Identities=37%  Similarity=0.981  Sum_probs=33.0

Q ss_pred             eeeccccccccccc-ccccccCe-ecccCcccc----cCCCCCCccCCC
Q 021991           54 LECPVCTNLMYPPI-HQCPNGHT-LCSNCKNRV----HNCCPTCRFDLG   96 (304)
Q Consensus        54 l~CpIC~~~l~~Pi-~qC~~GH~-fC~~C~~~~----~~~CP~Cr~~~~   96 (304)
                      -+|-||.+-..+-| |.|  ||. .|-.|-.++    ...||.||.++.
T Consensus         8 dECTICye~pvdsVlYtC--GHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTC--GHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcchHHHHHc--chHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            37999999888776 789  995 888897654    478999998864

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.46  E-value=0.01  Score=55.23  Aligned_cols=45  Identities=24%  Similarity=0.702  Sum_probs=37.0

Q ss_pred             eeeccccccccccc-ccccccCeecccCcccc---cCCCCCCccCCCCccc
Q 021991           54 LECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGNIRC  100 (304)
Q Consensus        54 l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~~r~  100 (304)
                      +.|-||..++..|| ..|  ||.||..|..+.   ...|.+|.+.+...-|
T Consensus       242 f~c~icr~~f~~pVvt~c--~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~~  290 (313)
T KOG1813|consen  242 FKCFICRKYFYRPVVTKC--GHYFCEVCALKPYQKGEKCYVCSQQTHGSFN  290 (313)
T ss_pred             ccccccccccccchhhcC--CceeehhhhccccccCCcceecccccccccc
Confidence            57999999999997 577  999999998754   3689999998755433

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.46  E-value=0.0049  Score=54.31  Aligned_cols=55  Identities=25%  Similarity=0.554  Sum_probs=40.3

Q ss_pred             eeeeccccccccccc-ccccccCeecccCcccc---cCCCCCCccCCCC--ccchHHHHHhhh
Q 021991           53 LLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN--IRCLALEKVAES  109 (304)
Q Consensus        53 ~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~--~r~~~le~~l~~  109 (304)
                      -|.|-||.+-+..|| ..|  ||.||+.|..+.   ...|-+|......  .-...+++++..
T Consensus       196 PF~C~iCKkdy~spvvt~C--GH~FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V~~d~~kmL~~  256 (259)
T COG5152         196 PFLCGICKKDYESPVVTEC--GHSFCSLCAIRKYQKGDECGVCGKATYGRFWVVSDLQKMLNK  256 (259)
T ss_pred             ceeehhchhhccchhhhhc--chhHHHHHHHHHhccCCcceecchhhccceeHHhhHHHHHhh
Confidence            378999999999997 567  999999998743   4789999876432  223445665543

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=95.42  E-value=0.0069  Score=42.88  Aligned_cols=37  Identities=32%  Similarity=0.638  Sum_probs=29.0

Q ss_pred             cccccCcccccCCCCCCCCccccChhhHHHHhhhhCCCC
Q 021991          133 HEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVD  171 (304)
Q Consensus       133 He~~C~~~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~~  171 (304)
                      |+++|+++++.||+.+  |.....+.+|..|+.......
T Consensus         1 H~~~C~~~~v~C~~~c--c~~~i~r~~l~~H~~~~C~~~   37 (60)
T PF02176_consen    1 HEEECPFRPVPCPNGC--CNEMIPRKELDDHLENECPKR   37 (60)
T ss_dssp             HHTTSTTSEEE-TT----S-BEEECCCHHHHHHTTSTTS
T ss_pred             CcccCCCCEeeCCCCC--cccceeHHHHHHHHHccCCCC
Confidence            7889999999999843  666688999999999887754

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.40  E-value=0.0035  Score=61.23  Aligned_cols=48  Identities=38%  Similarity=0.943  Sum_probs=39.9

Q ss_pred             CCCCeeeecccccccccccccccccCeecccCcccc---cCCCCCCccCCCC
Q 021991           49 GVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN   97 (304)
Q Consensus        49 ~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~   97 (304)
                      .+...|.|.||...|.+|+.. ++||.+|..|+.+.   ...||.||..+..
T Consensus        80 ~~~sef~c~vc~~~l~~pv~t-pcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   80 EIRSEFECCVCSRALYPPVVT-PCGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cccchhhhhhhHhhcCCCccc-cccccccHHHHHHHhccCCCCccccccccc
Confidence            448889999999999999843 55999999997764   3789999998763

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.02  E-value=0.0068  Score=41.58  Aligned_cols=40  Identities=28%  Similarity=0.786  Sum_probs=20.1

Q ss_pred             ecccccccc--cc-cccccccCeecccCcccc----cCCCCCCccCC
Q 021991           56 CPVCTNLMY--PP-IHQCPNGHTLCSNCKNRV----HNCCPTCRFDL   95 (304)
Q Consensus        56 CpIC~~~l~--~P-i~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~   95 (304)
                      ||+|.+.+.  +- ++.|++|..+|..|..+.    ...||.||.+.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            789999883  21 368999999999997654    47899999864

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.39  E-value=0.018  Score=53.83  Aligned_cols=41  Identities=32%  Similarity=0.776  Sum_probs=35.0

Q ss_pred             eeccccccccccc-ccccccCeecccCcccc----cCCCCCCccCCCC
Q 021991           55 ECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN   97 (304)
Q Consensus        55 ~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~   97 (304)
                      +|+||+.-..-|+ +.|  +|.||--|++-.    ...|++||.++..
T Consensus         9 eC~IC~nt~n~Pv~l~C--~HkFCyiCiKGsy~ndk~~CavCR~pids   54 (324)
T KOG0824|consen    9 ECLICYNTGNCPVNLYC--FHKFCYICIKGSYKNDKKTCAVCRFPIDS   54 (324)
T ss_pred             cceeeeccCCcCccccc--cchhhhhhhcchhhcCCCCCceecCCCCc
Confidence            6999999999886 678  999999999853    2569999999864

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=93.77  E-value=0.016  Score=55.01  Aligned_cols=48  Identities=31%  Similarity=0.762  Sum_probs=38.1

Q ss_pred             cCCCCeeeecccccccccc---cccccccCeecccCcccc----cCCCCCCccCCC
Q 021991           48 NGVHELLECPVCTNLMYPP---IHQCPNGHTLCSNCKNRV----HNCCPTCRFDLG   96 (304)
Q Consensus        48 ~~l~~~l~CpIC~~~l~~P---i~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~   96 (304)
                      ++..+++ ||.|.+.+..-   .+.|+||-.+|.-|+..+    ..+||.||....
T Consensus        10 sedeed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~   64 (480)
T COG5175          10 SEDEEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD   64 (480)
T ss_pred             ccccccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence            4555666 99999998633   368999999999998754    579999998764

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=93.55  E-value=0.064  Score=37.75  Aligned_cols=43  Identities=28%  Similarity=0.610  Sum_probs=32.2

Q ss_pred             Ceeeecccccccc-cccccccccCeecccCcccc-cCCCCCCccCCC
Q 021991           52 ELLECPVCTNLMY-PPIHQCPNGHTLCSNCKNRV-HNCCPTCRFDLG   96 (304)
Q Consensus        52 ~~l~CpIC~~~l~-~Pi~qC~~GH~fC~~C~~~~-~~~CP~Cr~~~~   96 (304)
                      ....|-.|...-. .++.+|  ||.+|..|..-. .+-||.|..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~pC--gH~I~~~~f~~~rYngCPfC~~~~~   50 (55)
T PF14447_consen    6 PEQPCVFCGFVGTKGTVLPC--GHLICDNCFPGERYNGCPFCGTPFE   50 (55)
T ss_pred             cceeEEEccccccccccccc--cceeeccccChhhccCCCCCCCccc
Confidence            3445667777644 455788  999999999743 378999999875

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.53  E-value=0.017  Score=58.89  Aligned_cols=43  Identities=30%  Similarity=0.649  Sum_probs=35.9

Q ss_pred             CCeeeeccccccccc-----c-cccccccCeecccCcccc---cCCCCCCccCC
Q 021991           51 HELLECPVCTNLMYP-----P-IHQCPNGHTLCSNCKNRV---HNCCPTCRFDL   95 (304)
Q Consensus        51 ~~~l~CpIC~~~l~~-----P-i~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~   95 (304)
                      .....|+||.+.|..     | .+.|  ||+|+..|+.++   .+.||.||..+
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~C--~Hifh~~CL~~W~er~qtCP~CR~~~  340 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLPC--GHIFHDSCLRSWFERQQTCPTCRTVL  340 (543)
T ss_pred             hcCCeeeeechhhccccccccceeec--ccchHHHHHHHHHHHhCcCCcchhhh
Confidence            345689999999986     4 4788  999999999977   58999999943

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.92  E-value=0.051  Score=51.92  Aligned_cols=44  Identities=32%  Similarity=0.742  Sum_probs=36.2

Q ss_pred             CCeeeeccccccccccc-ccccccCe-ecccCcccc---cCCCCCCccCCC
Q 021991           51 HELLECPVCTNLMYPPI-HQCPNGHT-LCSNCKNRV---HNCCPTCRFDLG   96 (304)
Q Consensus        51 ~~~l~CpIC~~~l~~Pi-~qC~~GH~-fC~~C~~~~---~~~CP~Cr~~~~   96 (304)
                      .+.-+|-||..-.++-+ +.|  -|. .|+.|.+.+   .+.||.||+++.
T Consensus       288 ~~gkeCVIClse~rdt~vLPC--RHLCLCs~Ca~~Lr~q~n~CPICRqpi~  336 (349)
T KOG4265|consen  288 ESGKECVICLSESRDTVVLPC--RHLCLCSGCAKSLRYQTNNCPICRQPIE  336 (349)
T ss_pred             cCCCeeEEEecCCcceEEecc--hhhehhHhHHHHHHHhhcCCCccccchH
Confidence            44568999999999874 688  885 999999865   378999999875

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.67  E-value=0.023  Score=52.89  Aligned_cols=43  Identities=30%  Similarity=0.794  Sum_probs=34.9

Q ss_pred             CCCeeeeccccccccccc-ccccccC-eecccCcccccCCCCCCccCC
Q 021991           50 VHELLECPVCTNLMYPPI-HQCPNGH-TLCSNCKNRVHNCCPTCRFDL   95 (304)
Q Consensus        50 l~~~l~CpIC~~~l~~Pi-~qC~~GH-~fC~~C~~~~~~~CP~Cr~~~   95 (304)
                      +.....|.||.+...+-+ +.|  || ..|-.|-.+. +.||+||+.+
T Consensus       297 ~~~~~LC~ICmDaP~DCvfLeC--GHmVtCt~CGkrm-~eCPICRqyi  341 (350)
T KOG4275|consen  297 LATRRLCAICMDAPRDCVFLEC--GHMVTCTKCGKRM-NECPICRQYI  341 (350)
T ss_pred             hhHHHHHHHHhcCCcceEEeec--CcEEeehhhcccc-ccCchHHHHH
Confidence            333667999999999887 578  99 5799998876 7999998854

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=91.93  E-value=0.051  Score=41.79  Aligned_cols=41  Identities=24%  Similarity=0.479  Sum_probs=27.1

Q ss_pred             eccccccccc-ccccccccCeecccCcccc------cCCCCCCccCCC
Q 021991           56 CPVCTNLMYP-PIHQCPNGHTLCSNCKNRV------HNCCPTCRFDLG   96 (304)
Q Consensus        56 CpIC~~~l~~-Pi~qC~~GH~fC~~C~~~~------~~~CP~Cr~~~~   96 (304)
                      ||.|..+-.+ |+.-..|+|.|=..|+.++      ...||.||+++.
T Consensus        35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            4444444332 4433345999999999875      368999999764

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=91.87  E-value=0.049  Score=54.51  Aligned_cols=51  Identities=24%  Similarity=0.570  Sum_probs=41.3

Q ss_pred             cccccCCCCeeeeccccccccccc-ccccccCeecccCcccc--------cCCCCCCccCCC
Q 021991           44 IYSNNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV--------HNCCPTCRFDLG   96 (304)
Q Consensus        44 ~~~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~--------~~~CP~Cr~~~~   96 (304)
                      ..+..+......|.+|.++-.++| ..|  .|.||+-|+...        ...||+|...+.
T Consensus       527 ~n~~~enk~~~~C~lc~d~aed~i~s~C--hH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls  586 (791)
T KOG1002|consen  527 ANLPDENKGEVECGLCHDPAEDYIESSC--HHKFCRLCIKEYVESFMENNNVTCPVCHIGLS  586 (791)
T ss_pred             cCCCccccCceeecccCChhhhhHhhhh--hHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence            345566778889999999999997 567  999999999643        368999988764

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=91.30  E-value=0.048  Score=38.76  Aligned_cols=34  Identities=21%  Similarity=0.338  Sum_probs=21.7

Q ss_pred             CCeeeecccccccccccccccccCeecccCcccc
Q 021991           51 HELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV   84 (304)
Q Consensus        51 ~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~   84 (304)
                      .-.+.|||...+|.+|+..=.|||+|.+..+..+
T Consensus         9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~   42 (57)
T PF11789_consen    9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQY   42 (57)
T ss_dssp             B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHH
T ss_pred             EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHH
Confidence            4457899999999999843233999998888765

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=90.61  E-value=0.15  Score=46.43  Aligned_cols=44  Identities=20%  Similarity=0.613  Sum_probs=31.4

Q ss_pred             eeeecccccccc-cccccccccCeecccCcccccC-CCCCCccCCC
Q 021991           53 LLECPVCTNLMY-PPIHQCPNGHTLCSNCKNRVHN-CCPTCRFDLG   96 (304)
Q Consensus        53 ~l~CpIC~~~l~-~Pi~qC~~GH~fC~~C~~~~~~-~CP~Cr~~~~   96 (304)
                      -..|..|+.--. +|.+--.|+|+||..|...... .||.|+.++.
T Consensus         3 ~VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~~C~lCkk~ir   48 (233)
T KOG4739|consen    3 FVHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPDVCPLCKKSIR   48 (233)
T ss_pred             eEEeccccccCCCCceeeeechhhhhhhhcccCCccccccccceee
Confidence            357888876544 4533333399999999976544 9999999863

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=89.18  E-value=0.1  Score=51.17  Aligned_cols=30  Identities=43%  Similarity=1.048  Sum_probs=26.9

Q ss_pred             CCeeeeccccccccccc-ccccccCeecccCcc
Q 021991           51 HELLECPVCTNLMYPPI-HQCPNGHTLCSNCKN   82 (304)
Q Consensus        51 ~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~   82 (304)
                      .+.|.||||...+++|| +.|  ||..|..|..
T Consensus         2 eeelkc~vc~~f~~epiil~c--~h~lc~~ca~   32 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIILPC--SHNLCQACAR   32 (699)
T ss_pred             cccccCceehhhccCceEeec--ccHHHHHHHH
Confidence            57899999999999997 788  9999999964

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=88.84  E-value=0.3  Score=34.00  Aligned_cols=49  Identities=27%  Similarity=0.565  Sum_probs=30.4

Q ss_pred             ccCCCCCCCCccccCccchhccccc--c-CcccccCCCCCCCCccccChhhHHHHhhhhCC
Q 021991          112 LPCKYQSLGCHDIFPYYGKLKHEQH--C-RFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQ  169 (304)
Q Consensus       112 v~C~~~~~GC~~~~~~~~~~~He~~--C-~~~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~  169 (304)
                      +.|||    |.+.+....+..|..+  . .-..+.||.    |.... ..+|..|+...|.
T Consensus         3 f~CP~----C~~~~~~~~L~~H~~~~H~~~~~~v~CPi----C~~~~-~~~l~~Hl~~~H~   54 (54)
T PF05605_consen    3 FTCPY----CGKGFSESSLVEHCEDEHRSESKNVVCPI----CSSRV-TDNLIRHLNSQHR   54 (54)
T ss_pred             cCCCC----CCCccCHHHHHHHHHhHCcCCCCCccCCC----chhhh-hhHHHHHHHHhcC
Confidence            56776    6665566666655332  1 123578887    66543 3588889888874

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.83  E-value=0.18  Score=47.32  Aligned_cols=43  Identities=26%  Similarity=0.700  Sum_probs=34.3

Q ss_pred             Ceeeecccccccc--ccc--ccccccCeecccCcccc----cCCCCCCccCCC
Q 021991           52 ELLECPVCTNLMY--PPI--HQCPNGHTLCSNCKNRV----HNCCPTCRFDLG   96 (304)
Q Consensus        52 ~~l~CpIC~~~l~--~Pi--~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~   96 (304)
                      .-.+|.||..-+.  +.+  +.|  .|.|=..|+.++    ..+||+||.++.
T Consensus       322 ~GveCaICms~fiK~d~~~vlPC--~H~FH~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         322 KGVECAICMSNFIKNDRLRVLPC--DHRFHVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             CCceEEEEhhhhcccceEEEecc--CceechhHHHHHHhhhcccCCccCCCCC
Confidence            3378999999875  333  456  999999999987    479999999875

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=88.79  E-value=0.16  Score=42.14  Aligned_cols=45  Identities=24%  Similarity=0.743  Sum_probs=36.0

Q ss_pred             Ceeeecccccccccccc----cccccCeecccCcccc------cCCCCCCccCCCC
Q 021991           52 ELLECPVCTNLMYPPIH----QCPNGHTLCSNCKNRV------HNCCPTCRFDLGN   97 (304)
Q Consensus        52 ~~l~CpIC~~~l~~Pi~----qC~~GH~fC~~C~~~~------~~~CP~Cr~~~~~   97 (304)
                      ..++|.||.+.-.+.-+    .| ||-.+|..|...+      ...||.|+..+..
T Consensus        79 ~lYeCnIC~etS~ee~FLKPneC-CgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs  133 (140)
T PF05290_consen   79 KLYECNICKETSAEERFLKPNEC-CGYSICNACYANLWKFCNLYPVCPVCKTSFKS  133 (140)
T ss_pred             CceeccCcccccchhhcCCcccc-cchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence            78999999999776643    34 4999999998754      4789999998764

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=88.76  E-value=0.1  Score=50.68  Aligned_cols=41  Identities=32%  Similarity=0.815  Sum_probs=33.1

Q ss_pred             eecccccccccc-cccccccCeecccCcccc-----cCCCCCCccCCCC
Q 021991           55 ECPVCTNLMYPP-IHQCPNGHTLCSNCKNRV-----HNCCPTCRFDLGN   97 (304)
Q Consensus        55 ~CpIC~~~l~~P-i~qC~~GH~fC~~C~~~~-----~~~CP~Cr~~~~~   97 (304)
                      .|-||-+-=++- |-.|  ||+.|..|+..+     .+.||.||..|..
T Consensus       371 LCKICaendKdvkIEPC--GHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG  417 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPC--GHLLCTSCLAAWQDSDEGQTCPFCRCEIKG  417 (563)
T ss_pred             HHHHhhccCCCcccccc--cchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence            499999987764 3457  999999999876     3689999998753

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.24  E-value=0.082  Score=54.03  Aligned_cols=39  Identities=41%  Similarity=0.963  Sum_probs=31.1

Q ss_pred             CCCCeeeecccccccc----ccc-ccccccCeecccCcccc-cCCCC
Q 021991           49 GVHELLECPVCTNLMY----PPI-HQCPNGHTLCSNCKNRV-HNCCP   89 (304)
Q Consensus        49 ~l~~~l~CpIC~~~l~----~Pi-~qC~~GH~fC~~C~~~~-~~~CP   89 (304)
                      ...+.|.|+||+..+.    .|+ ++|  ||+.|+.|.+++ ...||
T Consensus         7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~c--ghtic~~c~~~lyn~scp   51 (861)
T KOG3161|consen    7 KWVLLLLCDICLNLFVVQRLEPVSLQC--GHTICGHCVQLLYNASCP   51 (861)
T ss_pred             hhHHHhhchHHHHHHHHHhcCcccccc--cchHHHHHHHhHhhccCC
Confidence            4557789999976654    566 689  999999999976 46788

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.42  E-value=0.24  Score=47.53  Aligned_cols=45  Identities=27%  Similarity=0.628  Sum_probs=32.6

Q ss_pred             CCCCeeeeccccccccccc-ccccccCeecc-cCcccccCCCCCCccCCC
Q 021991           49 GVHELLECPVCTNLMYPPI-HQCPNGHTLCS-NCKNRVHNCCPTCRFDLG   96 (304)
Q Consensus        49 ~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~-~C~~~~~~~CP~Cr~~~~   96 (304)
                      +++....|.||.+-.++.+ +.|  ||.-|. .|. +...+||+||+.|.
T Consensus       301 ~~~~p~lcVVcl~e~~~~~fvpc--Gh~ccct~cs-~~l~~CPvCR~rI~  347 (355)
T KOG1571|consen  301 ELPQPDLCVVCLDEPKSAVFVPC--GHVCCCTLCS-KHLPQCPVCRQRIR  347 (355)
T ss_pred             ccCCCCceEEecCCccceeeecC--CcEEEchHHH-hhCCCCchhHHHHH
Confidence            4555567999999999876 477  998662 233 33477999998764

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=86.37  E-value=0.16  Score=48.50  Aligned_cols=45  Identities=29%  Similarity=0.781  Sum_probs=36.0

Q ss_pred             CCCCeeeecccccccc-cccccccccCeecccCcccc-----cCCCCCCccCC
Q 021991           49 GVHELLECPVCTNLMY-PPIHQCPNGHTLCSNCKNRV-----HNCCPTCRFDL   95 (304)
Q Consensus        49 ~l~~~l~CpIC~~~l~-~Pi~qC~~GH~fC~~C~~~~-----~~~CP~Cr~~~   95 (304)
                      ...+.-.|.||-+-++ ..++.|  ||..|.-|.-++     .+.||.||...
T Consensus        57 tDEen~~C~ICA~~~TYs~~~PC--~H~~CH~Ca~RlRALY~~K~C~~CrTE~  107 (493)
T COG5236          57 TDEENMNCQICAGSTTYSARYPC--GHQICHACAVRLRALYMQKGCPLCRTET  107 (493)
T ss_pred             cccccceeEEecCCceEEEeccC--CchHHHHHHHHHHHHHhccCCCcccccc
Confidence            3566678999999877 445778  999999998765     37899999874

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.74  E-value=0.38  Score=43.97  Aligned_cols=46  Identities=20%  Similarity=0.375  Sum_probs=36.4

Q ss_pred             Ceeeeccccccccccc---ccccccCeecccCccccc---CCCCCCccCCCC
Q 021991           52 ELLECPVCTNLMYPPI---HQCPNGHTLCSNCKNRVH---NCCPTCRFDLGN   97 (304)
Q Consensus        52 ~~l~CpIC~~~l~~Pi---~qC~~GH~fC~~C~~~~~---~~CP~Cr~~~~~   97 (304)
                      ..+.||+|.+.|++.+   +-=++||+||..|.+++.   ..||+|..++..
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkd  271 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKD  271 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcc
Confidence            6789999999999753   222459999999999873   679999888754

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.44  E-value=0.31  Score=46.89  Aligned_cols=44  Identities=27%  Similarity=0.748  Sum_probs=35.3

Q ss_pred             CCeeeeccccccccccc-----c----cccccCeecccCccccc----------CCCCCCccCCC
Q 021991           51 HELLECPVCTNLMYPPI-----H----QCPNGHTLCSNCKNRVH----------NCCPTCRFDLG   96 (304)
Q Consensus        51 ~~~l~CpIC~~~l~~Pi-----~----qC~~GH~fC~~C~~~~~----------~~CP~Cr~~~~   96 (304)
                      ...-.|.||.+....+.     +    .|  -|.||..|+.++.          ..||.||....
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC--~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNC--NHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCc--chhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            44678999999988665     2    36  8999999998763          67999999764

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=85.26  E-value=0.23  Score=51.92  Aligned_cols=40  Identities=25%  Similarity=0.676  Sum_probs=31.9

Q ss_pred             eeccccccccccc----ccccccCeecccCcccc---cCCCCCCccCCC
Q 021991           55 ECPVCTNLMYPPI----HQCPNGHTLCSNCKNRV---HNCCPTCRFDLG   96 (304)
Q Consensus        55 ~CpIC~~~l~~Pi----~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~   96 (304)
                      .||+|..-+.+-.    ..|  +|.||..|+..+   ...||.||..+.
T Consensus       125 ~CP~Ci~s~~DqL~~~~k~c--~H~FC~~Ci~sWsR~aqTCPiDR~EF~  171 (1134)
T KOG0825|consen  125 QCPNCLKSCNDQLEESEKHT--AHYFCEECVGSWSRCAQTCPVDRGEFG  171 (1134)
T ss_pred             hhhHHHHHHHHHhhcccccc--ccccHHHHhhhhhhhcccCchhhhhhh
Confidence            5899887776552    356  999999999876   478999999875

>PF04641 Rtf2: Rtf2 RING-finger

Probab=85.12  E-value=0.52  Score=43.56  Aligned_cols=52  Identities=17%  Similarity=0.363  Sum_probs=39.6

Q ss_pred             cccCCCCeeeeccccccccc--c-cccccccCeecccCccccc--CCCCCCccCCCC
Q 021991           46 SNNGVHELLECPVCTNLMYP--P-IHQCPNGHTLCSNCKNRVH--NCCPTCRFDLGN   97 (304)
Q Consensus        46 ~~~~l~~~l~CpIC~~~l~~--P-i~qC~~GH~fC~~C~~~~~--~~CP~Cr~~~~~   97 (304)
                      ....-...+.|||....|..  + ++--+|||+|+..++..+.  ..||.|..++..
T Consensus       106 ~~~~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~~  162 (260)
T PF04641_consen  106 SGDNSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFTE  162 (260)
T ss_pred             ccccCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCcccc
Confidence            34456788999999999964  2 2333349999999999874  479999999863

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.25  E-value=0.6  Score=43.62  Aligned_cols=56  Identities=32%  Similarity=0.775  Sum_probs=39.5

Q ss_pred             eeeeccccccccc------c-cccccccCeecccCccccc----CCCCCCccCC--CC------ccchHHHHHhhhc
Q 021991           53 LLECPVCTNLMYP------P-IHQCPNGHTLCSNCKNRVH----NCCPTCRFDL--GN------IRCLALEKVAESL  110 (304)
Q Consensus        53 ~l~CpIC~~~l~~------P-i~qC~~GH~fC~~C~~~~~----~~CP~Cr~~~--~~------~r~~~le~~l~~l  110 (304)
                      .+.|-||.+.+..      | ++.|  ||.+|..|..++.    ..||.||.+.  ..      ..|.++-..+...
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l~c--~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~   77 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVLKC--GHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM   77 (296)
T ss_pred             CCceeecCccccccCcccCCccccc--CceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence            4578999887762      4 4677  9999999999872    5689999984  22      2455555555443

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=83.51  E-value=0.69  Score=26.39  Aligned_cols=24  Identities=42%  Similarity=0.814  Sum_probs=18.1

Q ss_pred             ccCCCCCCCCccccChhhHHHHhhhhCC
Q 021991          142 YNCPYAGSECSVTGDIPTLVAHLKDDHQ  169 (304)
Q Consensus       142 ~~CP~~g~~C~~~g~~~~L~~Hl~~~H~  169 (304)
                      +.|+.    |+|.....+|..|++..|.
T Consensus         1 y~C~~----C~y~t~~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPH----CSYSTSKSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SS----SS-EESHHHHHHHHHHHHS
T ss_pred             CCCCC----CCCcCCHHHHHHHHHhhCc
Confidence            35775    9998888899999998774

>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454

Probab=81.71  E-value=0.35  Score=41.20  Aligned_cols=28  Identities=36%  Similarity=0.966  Sum_probs=23.6

Q ss_pred             cccccCe--------------ecccCcccccCCCCCCccCCC
Q 021991           69 QCPNGHT--------------LCSNCKNRVHNCCPTCRFDLG   96 (304)
Q Consensus        69 qC~~GH~--------------fC~~C~~~~~~~CP~Cr~~~~   96 (304)
                      -|.|||.              ||..|-.+....||.|..+|.
T Consensus         9 iC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~~Cp~C~~~Ir   50 (158)
T PF10083_consen    9 ICLNGHVITDSYDKNPELREKFCSKCGAKTITSCPNCSTPIR   50 (158)
T ss_pred             HccCccccccccccCchHHHHHHHHhhHHHHHHCcCCCCCCC
Confidence            4888874              999999888789999998874

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=81.52  E-value=0.47  Score=35.13  Aligned_cols=38  Identities=29%  Similarity=0.705  Sum_probs=22.9

Q ss_pred             eeecccccccccccccccccCeecccCcccc--cCCCCCCccCCC
Q 021991           54 LECPVCTNLMYPPIHQCPNGHTLCSNCKNRV--HNCCPTCRFDLG   96 (304)
Q Consensus        54 l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~--~~~CP~Cr~~~~   96 (304)
                      +.||.|...|..-     .|+..|..|-...  ...||.|..++.
T Consensus         2 ~~CP~C~~~L~~~-----~~~~~C~~C~~~~~~~a~CPdC~~~Le   41 (70)
T PF07191_consen    2 NTCPKCQQELEWQ-----GGHYHCEACQKDYKKEAFCPDCGQPLE   41 (70)
T ss_dssp             -B-SSS-SBEEEE-----TTEEEETTT--EEEEEEE-TTT-SB-E
T ss_pred             CcCCCCCCccEEe-----CCEEECccccccceecccCCCcccHHH
Confidence            5799999987653     1788899998754  367999988764

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=80.15  E-value=0.93  Score=43.66  Aligned_cols=41  Identities=24%  Similarity=0.651  Sum_probs=33.4

Q ss_pred             eeecccccccccc--c--ccccccCeecccCcccc----cCCCCCCccCCC
Q 021991           54 LECPVCTNLMYPP--I--HQCPNGHTLCSNCKNRV----HNCCPTCRFDLG   96 (304)
Q Consensus        54 l~CpIC~~~l~~P--i--~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~   96 (304)
                      ..|.||.+-+..-  +  +.|  +|.|=..|+.+|    ...||+|+..+.
T Consensus       230 ~~CaIClEdY~~GdklRiLPC--~H~FH~~CIDpWL~~~r~~CPvCK~di~  278 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPC--SHKFHVNCIDPWLTQTRTFCPVCKRDIR  278 (348)
T ss_pred             ceEEEeecccccCCeeeEecC--CCchhhccchhhHhhcCccCCCCCCcCC
Confidence            5899999998843  3  677  999999999987    255999999764

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=80.05  E-value=0.81  Score=45.18  Aligned_cols=48  Identities=29%  Similarity=0.643  Sum_probs=36.0

Q ss_pred             cCCCCeeeeccccccccccc---ccccccCeecccCccccc-CCCCCCccCC
Q 021991           48 NGVHELLECPVCTNLMYPPI---HQCPNGHTLCSNCKNRVH-NCCPTCRFDL   95 (304)
Q Consensus        48 ~~l~~~l~CpIC~~~l~~Pi---~qC~~GH~fC~~C~~~~~-~~CP~Cr~~~   95 (304)
                      ..+-++-+||||++-|-+-+   +.-.|.|.|=..|..++. .+||+||--.
T Consensus       170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q  221 (493)
T KOG0804|consen  170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQ  221 (493)
T ss_pred             CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhhhc
Confidence            34566778999999987553   332339999999999874 7899998743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	304
2a25_A	193	Crystal Structure Of Siah1 Sbd Bound To The Peptide		2e-21
2an6_A	191	Protein-Peptide Complex Length = 191		1e-20
1k2f_A	190	Siah, Seven In Absentia Homolog Length = 190		1e-20

>pdb|2A25|A Chain A, Crystal Structure Of Siah1 Sbd Bound To The Peptide Ekpaavvapittg From Sip Length = 193

Iteration: 1
 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 5/194 (2%)
Query: 106 VAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLK 165
           VA S+  PCKY S GC    P+  K  HE+ C FRPY+CP  G+ C   G +  ++ HL 
Sbjct: 1   VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 60
Query: 166 DDHQ-VDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQ-LGMALVYM 223
             H+ +    G      ++ +D N      W++ + +CFG  F L  E  +       + 
Sbjct: 61  HQHKSITTLQGEDI--VFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFF 117
Query: 224 AFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALY 283
           A ++ +G   +A+ F+Y LE+  H RRL W+  PRSI +       + D L+   ++A  
Sbjct: 118 AIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQL 177
Query: 284 FSGGDRTELKLRIT 297
           F+      + + I+
Sbjct: 178 FAENGNLGINVTIS 191

>pdb|2AN6|A Chain A, Protein-Peptide Complex Length = 191

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 5/191 (2%)
Query: 109 SLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDH 168
           S+  PCKY S GC    P+  K +HE+ C FRPY+CP  G+ C   G +  ++ HL   H
Sbjct: 2   SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 61
Query: 169 Q-VDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQ-LGMALVYMAFL 226
           + +    G      ++ +D N      W++ + +CFG  F L  E  +       + A +
Sbjct: 62  KSITTLQGEDI--VFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAIV 118
Query: 227 RFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSG 286
           + +G   +A+ F+Y LE+  H RRL W+  PRSI +       + D L+   ++A  F+ 
Sbjct: 119 QLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAE 178
Query: 287 GDRTELKLRIT 297
                + + I+
Sbjct: 179 NGNLGINVTIS 189

>pdb|1K2F|A Chain A, Siah, Seven In Absentia Homolog Length = 190

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 5/191 (2%)
Query: 109 SLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDH 168
           S+  PCKY S GC    P+  K +HE+ C FRPY+CP  G+ C   G +  ++ HL   H
Sbjct: 1   SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 60
Query: 169 Q-VDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQ-LGMALVYMAFL 226
           + +    G   +  ++ +D N      W++ + +CFG  F L  E  +       + A +
Sbjct: 61  KSITTLQG--EDIVFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAIV 117
Query: 227 RFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSG 286
           + +G   +A+ F+Y LE+  H RRL W+  PRSI +       + D L+   ++A  F+ 
Sbjct: 118 QLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAE 177
Query: 287 GDRTELKLRIT 297
                + + I+
Sbjct: 178 NGNLGINVTIS 188

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	304
2a25_A	193	Ubiquitin ligase SIAH1; protein-peptide complex, l	3e-61
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	8e-10
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	6e-09
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	5e-08
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	8e-07
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	9e-06
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	1e-05
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	1e-05
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	6e-05
1z6u_A	150	NP95-like ring finger protein isoform B; structura	1e-04
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	1e-04
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	1e-04
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	2e-04
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	2e-04
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	2e-04
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	5e-04
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	9e-04

>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A Length = 193

 Score =  192 bits (488), Expect = 3e-61
 Identities = 58/194 (29%), Positives = 89/194 (45%), Gaps = 5/194 (2%)

Query: 106 VAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLK 165
           VA S+  PCKY S GC    P+  K  HE+ C FRPY+CP  G+ C   G +  ++ HL 
Sbjct: 1   VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 60

Query: 166 DDH-QVDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQ-LGMALVYM 223
             H  +    G          D N      W+  + +CFG  F L  E  +       + 
Sbjct: 61  HQHKSITTLQGEDIVFLAT--DINLPGAVDWV-MMQSCFGFHFMLVLEKQEKYDGHQQFF 117

Query: 224 AFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALY 283
           A ++ +G   +A+ F+Y LE+  H RRL W+  PRSI +       + D L+   ++A  
Sbjct: 118 AIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQL 177

Query: 284 FSGGDRTELKLRIT 297
           F+      + + I+
Sbjct: 178 FAENGNLGINVTIS 191

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 54.8 bits (132), Expect = 8e-10
 Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 10/103 (9%)

Query: 50  VHELLECPVCTNLMYPPIHQCPNGHTLCSNC----KNRVHNCCPTCR--FDLGNIR-CLA 102
           +    ECP+C   +   + Q P GH  C  C         + CP          +     
Sbjct: 15  LESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNF 73

Query: 103 LEKVAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCP 145
            ++   SL + C  +  GC           H+ HC F      
Sbjct: 74  AKREILSLMVKCPNE--GCLHKMELRHLEDHQAHCEFALLEHH 114

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 52.8 bits (126), Expect = 6e-09
 Identities = 22/113 (19%), Positives = 29/113 (25%), Gaps = 20/113 (17%)

Query: 50  VHELLECPVCTNLMYPPIHQCPNGHTLCSNC----KNRVHNCCPTCRFDLGNIRCL---- 101
           +     C  C N++  P  Q   GH  CS C     +     C  C  +      +    
Sbjct: 28  LEAKYLCSACRNVLRRPF-QAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILE 86

Query: 102 --------ALEKVAESLELPCKYQSLGCHDIFPYYGKLK-HEQHCRFRPYNCP 145
                   A  +  ESL   C     GC            HE  C        
Sbjct: 87  SSSAFPDNAARREVESLPAVCPSD--GCTWKGTLKEYESCHEGRCPLMLLEHH 137

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 50.9 bits (121), Expect = 5e-08
 Identities = 26/119 (21%), Positives = 38/119 (31%), Gaps = 10/119 (8%)

Query: 54  LECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHN----CCPTCRFDLGNIRCLALEKVAES 109
            ECP+C   +   + Q P GH  C  C  +        CP     L   +          
Sbjct: 19  YECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKRE 77

Query: 110 L-ELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDD 167
           +  L  K  + GC           H+ HC F   +CP    +C        +  H+  D
Sbjct: 78  ILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCP----QCQRPFQKFHINIHILKD 132

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 46.0 bits (109), Expect = 8e-07
 Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 3/65 (4%)

Query: 50  VHELLECPVCTNLMYPPIHQCPNGHTLCSNC---KNRVHNCCPTCRFDLGNIRCLALEKV 106
           ++  L C +C              H+ C  C          CP C   +   R L   + 
Sbjct: 12  LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRS 71

Query: 107 AESLE 111
            ++L+
Sbjct: 72  DKTLQ 76

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 43.0 bits (101), Expect = 9e-06
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 52  ELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNC-CPTCR--FDLGNIRC-LALEKVA 107
           +LL C  CTN++  P+      H  CSNC +      CP C     + +++    L+ + 
Sbjct: 21  KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMI 80

Query: 108 ESL 110
           +  
Sbjct: 81  QLC 83

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 7/69 (10%)

Query: 50  VHELLECPVCTNLMYPPIHQCPNGHTLCSNC----KNRVHNCCPTCRFDLGN---IRCLA 102
           + E+  C +C   +             C +C           CP CR  L     + C  
Sbjct: 19  IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRW 78

Query: 103 LEKVAESLE 111
            E+V + L+
Sbjct: 79  AEEVTQQLD 87

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 3/53 (5%)

Query: 50 VHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNR---VHNCCPTCRFDLGNIR 99
          +   + C +C   +          HT C +C  R     N CP C   +   +
Sbjct: 12 LTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 40.7 bits (95), Expect = 6e-05
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 54 LECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHN----CCPTCRFDLGN 97
           +C +C  ++  P+   P  HTLC  C          CCP CR  + +
Sbjct: 16 CQCGICMEILVEPVT-LPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 11/70 (15%)

Query: 50  VHELLECPVCTNLMYPPIHQCPNGHTLCSNC-----KNRVHNCCPTCRFDLGNIRCL--- 101
           + +   C  C  L+Y P+      H +C +C     K +V + CP CR DLG    +   
Sbjct: 75  LEQSFMCVCCQELVYQPV-TTECFHNVCKDCLQRSFKAQVFS-CPACRHDLGQNYIMIPN 132

Query: 102 -ALEKVAESL 110
             L+ + +  
Sbjct: 133 EILQTLLDLF 142

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 9/69 (13%)

Query: 50  VHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV----HNCCPTCRFDLGNIRCL---- 101
           V E  +C  C  L++ PI      H +C +C +R        CP CR+DLG    +    
Sbjct: 49  VEETFQCICCQELVFRPIT-TVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQ 107

Query: 102 ALEKVAESL 110
            L+ V   L
Sbjct: 108 PLQTVLNQL 116

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 14/97 (14%)

Query: 50  VHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV----HNCCPTCRFDLG----NIRCL 101
             + + C +C +++  P+ +    H  C  C  R      + CP+CR+            
Sbjct: 20  FVKSISCQICEHILADPV-ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVK 78

Query: 102 ALEKVAESLELPCKYQSLGCHDIFPYYGKLKHEQHCR 138
           +   +  SL + C  Q   C++        K+  H  
Sbjct: 79  SFLNILNSLMVKCPAQ--DCNEEVSLE---KYNHHVS 110

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 13/54 (24%)

Query: 50 VHELLECPVCTNL-----MYPPIHQCPNGHTLCSNCKNRVHN------CCPTCR 92
          + E+LECP+C        + P +  C  GHT+C  C  ++         CP C 
Sbjct: 12 LREVLECPICMESFTEEQLRPKLLHC--GHTICRQCLEKLLASSINGVRCPFCS 63

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 10/70 (14%)

Query: 50  VHELLECPVCTNLMYPP--IHQCPNGHTLCSNCKNR---VHNCCPTCR--FDLGNIR-CL 101
           + +LL C +C         I QC   H  CS C  +       CPTC       +++   
Sbjct: 19  IDDLLRCGICFEYFNIAMIIPQC--SHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNR 76

Query: 102 ALEKVAESLE 111
            L+++ +SL 
Sbjct: 77  ILDELVKSLN 86

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 51 HELLECPVCTNLMYPP-IHQCPNGHTLCSNCKNRVHNCCPTCR 92
           + L C  C      P +  C   HTLCS C       CP C+
Sbjct: 4  FQFLRCQQCQAEAKCPKLLPC--LHTLCSGCLEASGMQCPICQ 44

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 37.1 bits (86), Expect = 5e-04
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 5/52 (9%)

Query: 48 NGVHELLECPVCTNLMYPPIHQCPNGHTLCSNC----KNRVHNCCPTCRFDL 95
            V +  +C  C  ++  P  Q   GH  C +C     +     C  C+  +
Sbjct: 10 KTVEDKYKCEKCHLVLCSPK-QTECGHRFCESCMAALLSSSSPKCTACQESI 60

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 38.1 bits (88), Expect = 9e-04
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 54  LECPVCTNLMYPPIHQCPNGHTLCSNCKNRV---HNCCPTCRFDL-GNIRCLALEKVAES 109
           L+C +C+      +      H+ CS C N        CP CR D+      L L+     
Sbjct: 65  LQCIICSEYFIEAV-TLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINK 123

Query: 110 L 110
           +
Sbjct: 124 M 124

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	304
2a25_A	193	Ubiquitin ligase SIAH1; protein-peptide complex, l	100.0
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.84
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.64
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.58
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.57
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.04
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.97
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	98.96
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.93
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.87
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	98.87
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.86
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.85
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.84
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	98.83
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.81
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.81
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.79
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	98.77
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.76
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	98.73
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	98.72
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.72
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	98.7
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.7
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.69
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.68
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.67
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.66
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	98.63
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.62
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.61
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.61
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	98.57
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.56
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.54
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.54
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.51
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	98.45
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.41
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.39
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.37
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.37
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.35
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	98.34
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.33
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.32
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.29
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.26
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.24
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.24
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.15
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.1
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.09
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.08
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.08
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	97.98
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	97.9
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	97.8
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	97.75
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	97.73
2yre_A	100	F-box only protein 30; zinc binding, E3 ubiquitin	97.72
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	97.71
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	97.68
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	97.67
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	97.55
2yre_A	100	F-box only protein 30; zinc binding, E3 ubiquitin	97.49
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	97.19
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	97.09
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	96.99
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.84
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	96.48
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	96.41
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	96.33
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	95.17
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	94.74
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	94.11
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	92.02
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	91.48
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	90.96
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	89.95
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	89.02
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	88.87
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	88.8
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	84.45
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	81.98
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	80.43

>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A

Probab=100.00  E-value=1.5e-43  Score=311.32  Aligned_cols=189  Identities=31%  Similarity=0.637  Sum_probs=131.4

Q ss_pred             HhhhccccCCCCCCCCccccCccchhccccccCcccccCCCCCCCCccccChhhHHHHhhhhCCC-CcccceeEEEEEec
Q 021991          106 VAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQV-DMHDGCTFNHRYVK  184 (304)
Q Consensus       106 ~l~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~-~~~~g~~~~~~f~~  184 (304)
                      +++++++||+|+.+||.+.++|.++.+||++|.|+|+.||.+|.+|+|+|+.++|..|++.+|++ .+++|+++  .|++
T Consensus         1 v~~s~~~pC~~~~~GC~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~~~~~~g~~i--~f~~   78 (193)
T 2a25_A            1 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDI--VFLA   78 (193)
T ss_dssp             -----------------------------------CEECCCC--CCCCEECSTTHHHHHHHHCTTSCEEESSEE--EEEE
T ss_pred             CccceEecCCCCCCCCCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHHHCCCcceecCceE--EEEe
Confidence            46789999999999999999999999999999999999999878899999999999999999997 46778765  4777


Q ss_pred             cCCCcccccceEEEEEeecCceEEEEEeEEeecc-eEEEEEEEEEeCCccccCCcEEEEEEeeCCceEEEEeeeeeeecc
Q 021991          185 SDPNEVENATWMLTVFNCFGRQFCLHFEAFQLGM-ALVYMAFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDS  263 (304)
Q Consensus       185 s~~~~~~~~~~~l~v~~~~g~~F~l~~~~~~~g~-~~~~~a~v~~iG~~~~a~~F~Y~l~~~~~~r~L~~~s~~~si~~~  263 (304)
                      ++.+...+.+|+ ++++|||++|+|+++++.+++ +.+++++|++||++++|++|+|+|++.+++|+|+|+++|+|++++
T Consensus        79 ~~~~l~~~~~~~-~v~~~~g~~Fll~~~~~~~~~g~~~~~~~V~~ig~~~ea~~f~Y~l~~~~~~r~L~~~~~~~s~~e~  157 (193)
T 2a25_A           79 TDINLPGAVDWV-MMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEG  157 (193)
T ss_dssp             ECCC----CEEE-EEEEETTEEEEEEEEEC------CEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETTTC
T ss_pred             cccccccceeEE-EEEEecCceEEEEEEEeccCCCCcEEEEEEEEeCCcchhcceEEEEEEEcCCCEEEEEEEEEehhhc
Confidence            777655566897 488999999999999998754 356778899999999999999999999999999999999999999


Q ss_pred             ccccccCCCeEEEeCCcceeeecCCeeeEEEEEE
Q 021991          264 HRKVRDSQDGLIIQRNMALYFSGGDRTELKLRIT  297 (304)
Q Consensus       264 ~~~~~~~~d~L~ip~~~~~~f~~~~~~~l~l~I~  297 (304)
                      +..+++++|||+||++++++|++|++|.|+|+|+
T Consensus       158 ~~~~~~~~d~L~ip~~~~~~f~~~~~L~l~v~I~  191 (193)
T 2a25_A          158 IATAIMNSDCLVFDTSIAQLFAENGNLGINVTIS  191 (193)
T ss_dssp             SHHHHHTTCSEEEEHHHHHHHCSSSEEEEEEEEE
T ss_pred             ccccccCCCEEEEcHHHHHhhcCCCeEEEEEEEE
Confidence            9998999999999999999999999999999995

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.84  E-value=7.9e-22  Score=168.94  Aligned_cols=122  Identities=22%  Similarity=0.425  Sum_probs=108.7

Q ss_pred             ccccccCCCCeeeecccccccccccccccccCeecccCcccc----cCCCCCCccCCCC---ccchHHHHHhhhccccCC
Q 021991           43 GIYSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN---IRCLALEKVAESLELPCK  115 (304)
Q Consensus        43 ~~~~~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~---~r~~~le~~l~~l~v~C~  115 (304)
                      ...+.+.+.+.|.||||.+++.+|+ +++|||+||..|+.++    ...||.||.++..   .++.++++.+.++++.|+
T Consensus         8 ~~~~~~~~~~~~~C~IC~~~~~~pv-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~   86 (170)
T 3hcs_A            8 DVEFDPPLESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCP   86 (170)
T ss_dssp             CSEESSCCCGGGBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECC
T ss_pred             ChhhccCCCCCCCCCCCChhhcCcE-ECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCCC
Confidence            3447788999999999999999996 4667999999999876    2489999999875   478999999999999999


Q ss_pred             CCCCCCccccCccchhccccccCcccccCCCCCCCCccccChhhHHHHhhhhCCCC
Q 021991          116 YQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVD  171 (304)
Q Consensus       116 ~~~~GC~~~~~~~~~~~He~~C~~~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~~  171 (304)
                      |.  ||++.+++.++.+|+++|+|+++.||    +|++.+.+.+|..|+.......
T Consensus        87 n~--GC~~~~~~~~l~~H~~~C~~~~v~C~----~C~~~~~r~~l~~H~~~~C~~r  136 (170)
T 3hcs_A           87 NE--GCLHKMELRHLEDHQAHCEFALMDCP----QCQRPFQKFHINIHILKDCPRR  136 (170)
T ss_dssp             ST--TCCCEEEGGGHHHHHTTCTTSEEECT----TTCCEEEGGGHHHHHHHTCTTC
T ss_pred             CC--CCCceecHhHHHHHHhcCCceeeECC----CCChHHHHHHHHHHhhhhCCCC
Confidence            84  99999999999999999999999998    3999999999999998777654

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.64  E-value=1.1e-16  Score=129.19  Aligned_cols=93  Identities=23%  Similarity=0.427  Sum_probs=80.8

Q ss_pred             ccccCCCCeeeecccccccccccccccccCeecccCcccc---c-CCCCCCccCCCC---ccchHHHHHhhhccccCCCC
Q 021991           45 YSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV---H-NCCPTCRFDLGN---IRCLALEKVAESLELPCKYQ  117 (304)
Q Consensus        45 ~~~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~---~-~~CP~Cr~~~~~---~r~~~le~~l~~l~v~C~~~  117 (304)
                      .+.+.+.+.+.|+||.+++.+|+. .+|||+||..|+.++   . ..||.||.++..   .++..+++.+.++++.|+| 
T Consensus        10 ~~~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n-   87 (118)
T 3hct_A           10 EFDPPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN-   87 (118)
T ss_dssp             CBSSCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECSS-
T ss_pred             hhccCCCCCCCCCcCChhhcCeEE-CCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeECCC-
Confidence            467789999999999999999962 344999999999876   2 489999999865   3788999999999999997 


Q ss_pred             CCCCccccCccchhccccccCcc
Q 021991          118 SLGCHDIFPYYGKLKHEQHCRFR  140 (304)
Q Consensus       118 ~~GC~~~~~~~~~~~He~~C~~~  140 (304)
                       .||++.+++.++++|+++|.+.
T Consensus        88 -~gC~~~~~~~~l~~H~~~c~~~  109 (118)
T 3hct_A           88 -EGCLHKMELRHLEDHQAHCEFA  109 (118)
T ss_dssp             -TTCCCEEEGGGSGGGTSSSCC-
T ss_pred             -CCCCCEEeeHHHHHHHHHchhh
Confidence             5999999999999999998874

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.58  E-value=1.4e-16  Score=132.95  Aligned_cols=91  Identities=24%  Similarity=0.387  Sum_probs=77.5

Q ss_pred             ccccCCCCeeeecccccccccccccccccCeecccCccccc----CCCCCCccCCCC------------ccchHHHHHhh
Q 021991           45 YSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVH----NCCPTCRFDLGN------------IRCLALEKVAE  108 (304)
Q Consensus        45 ~~~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~~----~~CP~Cr~~~~~------------~r~~~le~~l~  108 (304)
                      .+.+.+.+.+.|+||.+++.+|+ +.+|||+||..|+.++.    ..||.||.++..            .++.++++.+.
T Consensus        23 ~~~~~l~~~~~C~IC~~~~~~pv-~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~  101 (141)
T 3knv_A           23 LLGTKLEAKYLCSACRNVLRRPF-QAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVE  101 (141)
T ss_dssp             GTGGGCCGGGBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHH
T ss_pred             hhhccCCcCcCCCCCChhhcCcE-ECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHc
Confidence            34578899999999999999995 44569999999999762    379999997521            26788999999


Q ss_pred             hccccCCCCCCCCccccCccchhc-cccccC
Q 021991          109 SLELPCKYQSLGCHDIFPYYGKLK-HEQHCR  138 (304)
Q Consensus       109 ~l~v~C~~~~~GC~~~~~~~~~~~-He~~C~  138 (304)
                      +++++|+|  .||.|.+++.++++ |+..|.
T Consensus       102 ~L~v~Cpn--~GC~~~~~l~~l~~~H~~~~~  130 (141)
T 3knv_A          102 SLPAVCPS--DGCTWKGTLKEYESCHEGRCP  130 (141)
T ss_dssp             TSEEECCS--TTCCCEEEHHHHHHHTTTCCH
T ss_pred             ccccccCC--CCCCCEeEHHHHHHHHHHHhH
Confidence            99999999  59999999999998 998875

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.57  E-value=1.7e-16  Score=127.41  Aligned_cols=91  Identities=19%  Similarity=0.428  Sum_probs=77.8

Q ss_pred             ccCCCCeeeecccccccccccccccccCeecccCcccc----cCCCCCCccCCCC----ccchHHHHHhhhccccCCCCC
Q 021991           47 NNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN----IRCLALEKVAESLELPCKYQS  118 (304)
Q Consensus        47 ~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~----~r~~~le~~l~~l~v~C~~~~  118 (304)
                      ..++.+.+.||||++++.+|+. .+|||.||..|+.++    ...||.||.++..    ..+..+.+++.++++.|+|. 
T Consensus        17 ~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~-   94 (116)
T 1rmd_A           17 PAHFVKSISCQICEHILADPVE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQ-   94 (116)
T ss_dssp             CHHHHHHTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCST-
T ss_pred             HHhccCCCCCCCCCcHhcCcEE-cCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCC-
Confidence            3456678899999999999973 344999999999865    3579999999864    34678999999999999996 


Q ss_pred             CCCccccCccchhccccccCcc
Q 021991          119 LGCHDIFPYYGKLKHEQHCRFR  140 (304)
Q Consensus       119 ~GC~~~~~~~~~~~He~~C~~~  140 (304)
                       ||++.+++.++.+|+++|.+.
T Consensus        95 -gC~~~~~~~~~~~H~~~C~~~  115 (116)
T 1rmd_A           95 -DCNEEVSLEKYNHHVSSHKES  115 (116)
T ss_dssp             -TCCCEEEHHHHHHHHHTSCCC
T ss_pred             -CCcchhhHhHHHHHHHHhhcc
Confidence             999999999999999999874

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.04  E-value=9.5e-11  Score=89.64  Aligned_cols=69  Identities=22%  Similarity=0.550  Sum_probs=55.4

Q ss_pred             cccCCCCeeeeccccccccccc-cc-ccccCeecccCccccc-----CCCCCCccCCC----CccchHHHHHhhhccccC
Q 021991           46 SNNGVHELLECPVCTNLMYPPI-HQ-CPNGHTLCSNCKNRVH-----NCCPTCRFDLG----NIRCLALEKVAESLELPC  114 (304)
Q Consensus        46 ~~~~l~~~l~CpIC~~~l~~Pi-~q-C~~GH~fC~~C~~~~~-----~~CP~Cr~~~~----~~r~~~le~~l~~l~v~C  114 (304)
                      ..+.+.+.+.|+||.+++.+|+ +. |  ||+||..|+.++.     ..||.||.++.    ..+|..++++++.++-.-
T Consensus         6 ~~~~~~~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~   83 (92)
T 3ztg_A            6 EDDPIPDELLCLICKDIMTDAVVIPCC--GNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNET   83 (92)
T ss_dssp             SCCCCCTTTEETTTTEECSSCEECTTT--CCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHH
T ss_pred             ccccCCcCCCCCCCChhhcCceECCCC--CCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHH
Confidence            3457888999999999999997 45 5  9999999998652     58999999973    257889999888876544


Q ss_pred             CC
Q 021991          115 KY  116 (304)
Q Consensus       115 ~~  116 (304)
                      .+
T Consensus        84 ~~   85 (92)
T 3ztg_A           84 GY   85 (92)
T ss_dssp             TC
T ss_pred             hH
Confidence            33

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.97  E-value=9.5e-11  Score=86.85  Aligned_cols=51  Identities=33%  Similarity=0.860  Sum_probs=42.8

Q ss_pred             ccccCCCCeeeeccccccccccc-ccccccCeecccCcccc----------cCCCCCCccCCCC
Q 021991           45 YSNNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV----------HNCCPTCRFDLGN   97 (304)
Q Consensus        45 ~~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~----------~~~CP~Cr~~~~~   97 (304)
                      ...+.+.+.+.|+||++.+.+|+ +.|  ||.||..|+.++          ...||.||..+..
T Consensus         4 ~~~~~~~~~~~C~IC~~~~~~p~~l~C--gH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A            4 GSSGNVQEEVTCPICLELLTEPLSLDC--GHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             SSSCCCCCCCEETTTTEECSSCCCCSS--SCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             chHhhcccCCCCcCCCcccCCeeECCC--CCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            45678889999999999999996 455  999999999864          2479999998764

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=98.96  E-value=9.4e-11  Score=86.91  Aligned_cols=62  Identities=21%  Similarity=0.363  Sum_probs=50.7

Q ss_pred             cCCCCeeeeccccccccccc-ccccccCeecccCcccc----cCCCCCCccCCCC---ccchHHHHHhhhcc
Q 021991           48 NGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN---IRCLALEKVAESLE  111 (304)
Q Consensus        48 ~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~---~r~~~le~~l~~l~  111 (304)
                      .++.+.+.||||.+++.+|+ ..|  ||+||..|+.++    ...||.||.++..   .+|.+++++++.+.
T Consensus         3 ~~~~~~~~C~IC~~~~~~Pv~~~C--gH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~   72 (78)
T 1t1h_A            3 PEFPEYFRCPISLELMKDPVIVST--GQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWC   72 (78)
T ss_dssp             CCCSSSSSCTTTSCCCSSEEEETT--TEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred             cCCcccCCCCCccccccCCEEcCC--CCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHH
Confidence            45778899999999999997 455  999999999865    3579999999864   46888888877654

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=1.8e-10  Score=86.08  Aligned_cols=51  Identities=31%  Similarity=0.821  Sum_probs=43.0

Q ss_pred             ccccCCCCeeeeccccccccccc-ccccccCeecccCcccc---------cCCCCCCccCCCC
Q 021991           45 YSNNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV---------HNCCPTCRFDLGN   97 (304)
Q Consensus        45 ~~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~---------~~~CP~Cr~~~~~   97 (304)
                      ...+.+.+.+.|+||++.+.+|+ +.|  ||.||..|+.++         ...||.||..+..
T Consensus        11 ~~~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           11 GILVNVKEEVTCPICLELLTQPLSLDC--GHSFCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCCCCCCCCTTTCSCCSSCBCCSS--SCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             HHHHHccCCCCCCCCCcccCCceeCCC--CCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            45577888999999999999996 455  999999999864         4689999998763

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.87  E-value=7.4e-10  Score=84.09  Aligned_cols=63  Identities=16%  Similarity=0.130  Sum_probs=53.0

Q ss_pred             ccCCCCeeeeccccccccccc-ccccccCeecccCcccc---cCCCCCCccCCCC---ccchHHHHHhhhcc
Q 021991           47 NNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN---IRCLALEKVAESLE  111 (304)
Q Consensus        47 ~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~l~~l~  111 (304)
                      ...+++.|.||||+++|++|| ..|  ||+||+.|+.++   ...||.|+.++..   .+|.++.++++.+.
T Consensus         8 ~~~~p~~~~CpI~~~~m~dPV~~~c--Ghtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~   77 (85)
T 2kr4_A            8 YSDAPDEFRDPLMDTLMTDPVRLPS--GTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWM   77 (85)
T ss_dssp             CTTCCTTTBCTTTCSBCSSEEECTT--SCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred             hhcCchheECcccCchhcCCeECCC--CCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHH
Confidence            356788999999999999997 455  999999999876   4789999999864   57888888887663

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=9.8e-10  Score=80.15  Aligned_cols=51  Identities=27%  Similarity=0.798  Sum_probs=42.6

Q ss_pred             ccccCCCCeeeeccccccccccc-ccccccCeecccCccccc------CCCCCCccCCCC
Q 021991           45 YSNNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRVH------NCCPTCRFDLGN   97 (304)
Q Consensus        45 ~~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~------~~CP~Cr~~~~~   97 (304)
                      ...+++.+.+.|+||++.+.+|+ +.|  ||.||..|+.++.      ..||.||.++..
T Consensus        12 ~~~~~~~~~~~C~IC~~~~~~~~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           12 QFVNKLQEEVICPICLDILQKPVTIDC--GHNFCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCCCCCCCBCTTTCSBCSSEEECTT--CCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             HHHHhCccCCEeccCCcccCCeEEcCC--CChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            45567888999999999999996 455  9999999998763      379999998753

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.86  E-value=1e-09  Score=85.64  Aligned_cols=64  Identities=16%  Similarity=0.095  Sum_probs=53.8

Q ss_pred             ccCCCCeeeeccccccccccc-cccccc-CeecccCcccc---cCCCCCCccCCCC---ccchHHHHHhhhccc
Q 021991           47 NNGVHELLECPVCTNLMYPPI-HQCPNG-HTLCSNCKNRV---HNCCPTCRFDLGN---IRCLALEKVAESLEL  112 (304)
Q Consensus        47 ~~~l~~~l~CpIC~~~l~~Pi-~qC~~G-H~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~l~~l~v  112 (304)
                      ..++++.|.||||+++|++|| ..|  | |+||+.|+.++   ...||.|+.++..   .+|..++++++.+.-
T Consensus        16 ~~~~p~~~~CpI~~~~m~dPV~~~c--G~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~   87 (98)
T 1wgm_A           16 YADACDEFLDPIMSTLMCDPVVLPS--SRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLA   87 (98)
T ss_dssp             CCSCCTTTBCTTTCSBCSSEEECTT--TCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHH
T ss_pred             hhcCcHhcCCcCccccccCCeECCC--CCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHH
Confidence            456788999999999999997 456  8 99999999876   3679999999864   688899998887754

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.85  E-value=3.7e-10  Score=90.48  Aligned_cols=67  Identities=24%  Similarity=0.440  Sum_probs=52.7

Q ss_pred             ccccCCCCeeeecccccccccccccccccCeecccCccccc-CCCCCCccCCCC---ccchHHHHHhhhcc
Q 021991           45 YSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVH-NCCPTCRFDLGN---IRCLALEKVAESLE  111 (304)
Q Consensus        45 ~~~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~~-~~CP~Cr~~~~~---~r~~~le~~l~~l~  111 (304)
                      ...+.+.+.+.|+||++++.+|+...+|||+||..|+.++. ..||.||.++..   .+|..+.+++..++
T Consensus        14 ~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~   84 (117)
T 1jm7_B           14 AALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLCS   84 (117)
T ss_dssp             HHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHHH
T ss_pred             HHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHHHHH
Confidence            44567788899999999999997432349999999999874 589999999853   46788887777543

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.84  E-value=3.1e-10  Score=84.80  Aligned_cols=59  Identities=25%  Similarity=0.645  Sum_probs=45.7

Q ss_pred             ccccCCCCeeeeccccccccccc-ccccccCeecccCcccc---------cCCCCCCccCCCC---ccchHHHH
Q 021991           45 YSNNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV---------HNCCPTCRFDLGN---IRCLALEK  105 (304)
Q Consensus        45 ~~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~---------~~~CP~Cr~~~~~---~r~~~le~  105 (304)
                      ...+++.+.+.|+||++.+.+|+ +.|  ||.||..|+.++         ...||.||..+..   .+|..+++
T Consensus        11 ~~~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~   82 (85)
T 2ecw_A           11 SVLEMIKEEVTCPICLELLKEPVSADC--NHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN   82 (85)
T ss_dssp             CCCCCCCTTTSCTTTCSCCSSCEECTT--SCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred             HHHHhCccCCCCcCCChhhCcceeCCC--CCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence            44567888899999999999996 455  999999999864         3579999998763   34544443

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.83  E-value=1.8e-09  Score=80.66  Aligned_cols=60  Identities=18%  Similarity=0.435  Sum_probs=46.3

Q ss_pred             ccCCCCeeeeccccccccccc-ccccccCeecccCcccc---cCCCCCCccCCCC--ccchHHHHHhh
Q 021991           47 NNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN--IRCLALEKVAE  108 (304)
Q Consensus        47 ~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~--~r~~~le~~l~  108 (304)
                      .++..+.+.|+||++.+.+|+ +.|  ||.||..|+.++   ...||.||.++..  ..+..+...+.
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~~~~   74 (81)
T 2csy_A            9 SEEEEIPFRCFICRQAFQNPVVTKC--RHYFCESCALEHFRATPRCYICDQPTGGIFNPAKELMAKLQ   74 (81)
T ss_dssp             SSCCCCCSBCSSSCSBCCSEEECTT--SCEEEHHHHHHHHHHCSBCSSSCCBCCSCCEECHHHHHHHS
T ss_pred             cccCCCCCCCcCCCchhcCeeEccC--CCHhHHHHHHHHHHCCCcCCCcCccccccCCcHHHHHHHHH
Confidence            356677889999999999996 456  999999999876   4689999999863  34555544443

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.81  E-value=9.6e-10  Score=86.10  Aligned_cols=63  Identities=16%  Similarity=0.143  Sum_probs=53.5

Q ss_pred             ccCCCCeeeeccccccccccc-ccccccCeecccCcccc---cCCCCCCccCCCC---ccchHHHHHhhhcc
Q 021991           47 NNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN---IRCLALEKVAESLE  111 (304)
Q Consensus        47 ~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~l~~l~  111 (304)
                      ..++++.|.||||+++|++|| ..|  ||+||+.|+.++   ...||.|+.++..   .+|..+.++++.+.
T Consensus        23 ~~~~p~~~~CpI~~~~m~dPV~~~c--Ghtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~   92 (100)
T 2kre_A           23 YSDAPDEFRDPLMDTLMTDPVRLPS--GTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWM   92 (100)
T ss_dssp             CSSCSTTTBCTTTCSBCSSEEEETT--TEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred             hccCcHhhCCcCccCcccCCeECCC--CCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence            456788999999999999997 466  999999999876   3689999999864   67889998888764

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.81  E-value=5.2e-10  Score=86.78  Aligned_cols=68  Identities=22%  Similarity=0.486  Sum_probs=53.7

Q ss_pred             cccccCCCCeeeecccccccccccccccccCeecccCcccc---cCCCCCCccCCCC---ccchHHHHHhhhcc
Q 021991           44 IYSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN---IRCLALEKVAESLE  111 (304)
Q Consensus        44 ~~~~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~l~~l~  111 (304)
                      ....+.+.+.+.|+||.+.+.+|+..-+|||.||..|+.++   ...||.||..+..   .+|..++++++.++
T Consensus        13 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~   86 (99)
T 2y43_A           13 LAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLN   86 (99)
T ss_dssp             GGGGHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred             hhHHHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHH
Confidence            34456677889999999999999632133999999999875   3689999999863   57888888887764

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.79  E-value=3e-09  Score=74.21  Aligned_cols=46  Identities=30%  Similarity=0.590  Sum_probs=39.7

Q ss_pred             CCCeeeeccccccccccc-ccccccCeecccCcccccCCCCCCccCCCC
Q 021991           50 VHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRVHNCCPTCRFDLGN   97 (304)
Q Consensus        50 l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~~~CP~Cr~~~~~   97 (304)
                      ..+.+.|+||.+.+.+|+ +.|  ||+||..|+.+....||.||..+..
T Consensus         3 e~~~~~C~IC~~~~~~p~~l~C--gH~fC~~Ci~~~~~~CP~Cr~~~~~   49 (56)
T 1bor_A            3 EFQFLRCQQCQAEAKCPKLLPC--LHTLCSGCLEASGMQCPICQAPWPL   49 (56)
T ss_dssp             SCCCSSCSSSCSSCBCCSCSTT--SCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred             cccCCCceEeCCccCCeEEcCC--CCcccHHHHccCCCCCCcCCcEeec
Confidence            456788999999999996 577  9999999998877799999998753

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.77  E-value=3.1e-09  Score=76.20  Aligned_cols=51  Identities=22%  Similarity=0.608  Sum_probs=42.8

Q ss_pred             ccccCCCCeeeeccccccccccc-ccccccCeecccCcccc----cCCCCCCccCCCC
Q 021991           45 YSNNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN   97 (304)
Q Consensus        45 ~~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~   97 (304)
                      .+.+.+.+.+.|+||.+.+.+|+ ..|  ||.||..|+.++    ...||.||.++..
T Consensus         7 ~~~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A            7 GFVKTVEDKYKCEKCHLVLCSPKQTEC--GHRFCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CSCCSCCCCEECTTTCCEESSCCCCSS--SCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             hhhhcCCcCCCCCCCChHhcCeeECCC--CCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            45567888999999999999997 455  999999999865    3579999998753

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.76  E-value=6.2e-10  Score=89.95  Aligned_cols=64  Identities=34%  Similarity=0.783  Sum_probs=52.0

Q ss_pred             ccccCCCCeeeeccccccccccc-ccccccCeecccCcccc----cCCCCCCccCCCC----ccchHHHHHhhhc
Q 021991           45 YSNNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN----IRCLALEKVAESL  110 (304)
Q Consensus        45 ~~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~----~r~~~le~~l~~l  110 (304)
                      ...+.+.+.+.|+||.+++.+|+ +.|  ||+||..|+.++    ...||.||.++..    .+|..+.++++.+
T Consensus        44 ~~~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~  116 (124)
T 3fl2_A           44 LFLSKVEETFQCICCQELVFRPITTVC--QHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQL  116 (124)
T ss_dssp             HHHHHHHHHTBCTTTSSBCSSEEECTT--SCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHH
T ss_pred             HHHHhCccCCCCCcCChHHcCcEEeeC--CCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHH
Confidence            34556778899999999999997 555  999999999865    2489999999864    4688888888765

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.73  E-value=4.5e-09  Score=76.73  Aligned_cols=51  Identities=24%  Similarity=0.628  Sum_probs=43.1

Q ss_pred             ccccCCCCeeeecccccccccccc--cccccCeecccCcccc---cCCCCCCccCCCC
Q 021991           45 YSNNGVHELLECPVCTNLMYPPIH--QCPNGHTLCSNCKNRV---HNCCPTCRFDLGN   97 (304)
Q Consensus        45 ~~~~~l~~~l~CpIC~~~l~~Pi~--qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~   97 (304)
                      ...+++.+.+.|+||++.+.+|+.  .|  ||.||..|+.++   ...||.||.++..
T Consensus         7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   62 (72)
T 2djb_A            7 GNLSELTPYILCSICKGYLIDATTITEC--LHTFCKSCIVRHFYYSNRCPKCNIVVHQ   62 (72)
T ss_dssp             CCCCCCCGGGSCTTTSSCCSSCEECSSS--CCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred             hhHhhcCCCCCCCCCChHHHCcCEECCC--CCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence            445678889999999999999973  56  999999999876   4789999998764

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=98.72  E-value=1.5e-09  Score=89.37  Aligned_cols=58  Identities=28%  Similarity=0.683  Sum_probs=44.3

Q ss_pred             CCCCeeeeccccccccccc-ccccccCeecccCcccc---cCCCCCCccCCCC-ccchHHHHHhh
Q 021991           49 GVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN-IRCLALEKVAE  108 (304)
Q Consensus        49 ~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~-~r~~~le~~l~  108 (304)
                      .+.+.+.|+||.+.+.+|+ +.|  ||.||..|+.++   ...||.||.++.. ..+..+...+.
T Consensus        49 ~~~~~~~C~iC~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~i~  111 (138)
T 4ayc_A           49 VLENELQCIICSEYFIEAVTLNC--AHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCIN  111 (138)
T ss_dssp             HHHHHSBCTTTCSBCSSEEEETT--SCEEEHHHHHHHTTTCSBCTTTCCBCCCEEECHHHHHHHH
T ss_pred             hccccCCCcccCcccCCceECCC--CCCccHHHHHHHHHcCCcCCCCCCcCCCCCCccchhHHHH
Confidence            3456788999999999997 456  999999999875   4689999999865 33444444443

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.72  E-value=3.4e-09  Score=75.24  Aligned_cols=45  Identities=31%  Similarity=0.885  Sum_probs=37.6

Q ss_pred             ccccCCCCeeeeccccccccccc-ccccccCeecccCccccc------CCCCCC
Q 021991           45 YSNNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRVH------NCCPTC   91 (304)
Q Consensus        45 ~~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~------~~CP~C   91 (304)
                      ...+.+.+.+.|+||++.+.+|+ +.|  ||.||..|+.++.      ..||.|
T Consensus        12 ~~~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           12 QFVNKLQEEVICPICLDILQKPVTIDC--GHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCCCCBCTTTCSBCSSCEECTT--SSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             HHHHhCccCCCCCcCCchhCCeEEeCC--CCcchHHHHHHHHHcCCCCCcCcCC
Confidence            45577889999999999999996 455  9999999998752      379987

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=98.70  E-value=4.6e-09  Score=77.21  Aligned_cols=49  Identities=24%  Similarity=0.720  Sum_probs=41.1

Q ss_pred             cccCCCCeeeeccccccccccc-cc-ccccCeecccCccccc-----CCCCCCccCCC
Q 021991           46 SNNGVHELLECPVCTNLMYPPI-HQ-CPNGHTLCSNCKNRVH-----NCCPTCRFDLG   96 (304)
Q Consensus        46 ~~~~l~~~l~CpIC~~~l~~Pi-~q-C~~GH~fC~~C~~~~~-----~~CP~Cr~~~~   96 (304)
                      ..+++.+.+.|+||++++.+|+ +. |  ||.||..|+.++.     ..||.||.++.
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A            8 EDDPIPDELLCLICKDIMTDAVVIPCC--GNSYCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             CCCCSCGGGSCSSSCCCCTTCEECSSS--CCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             ccccCCCCCCCcCCChHHhCCeEcCCC--CCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            3467788999999999999997 44 6  9999999998762     58999999753

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.70  E-value=4.8e-09  Score=78.44  Aligned_cols=51  Identities=25%  Similarity=0.679  Sum_probs=40.6

Q ss_pred             ccCCCCeeeecccccccc--ccc-ccccccCeecccCcccc----cCCCCCCccCCCC
Q 021991           47 NNGVHELLECPVCTNLMY--PPI-HQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN   97 (304)
Q Consensus        47 ~~~l~~~l~CpIC~~~l~--~Pi-~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~   97 (304)
                      .+++.+.+.||||.+.+.  ++. +.|+|||.||..|+.++    ...||.||.++..
T Consensus         5 ~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~   62 (78)
T 1e4u_A            5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   62 (78)
T ss_dssp             SCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred             ccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence            456788899999999985  343 46666999999999865    3589999998764

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.69  E-value=1.5e-09  Score=91.09  Aligned_cols=64  Identities=30%  Similarity=0.713  Sum_probs=52.7

Q ss_pred             cccCCCCeeeeccccccccccc-ccccccCeecccCccccc----CCCCCCccCCCC----ccchHHHHHhhhcc
Q 021991           46 SNNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRVH----NCCPTCRFDLGN----IRCLALEKVAESLE  111 (304)
Q Consensus        46 ~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~----~~CP~Cr~~~~~----~r~~~le~~l~~l~  111 (304)
                      ..+.+.+.+.|+||.+++.+|+ +.|  ||+||..|+.++.    ..||.||.++..    .+|..++++++.+.
T Consensus        71 ~~~~l~~~~~C~IC~~~~~~pv~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~  143 (150)
T 1z6u_A           71 FLKKLEQSFMCVCCQELVYQPVTTEC--FHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF  143 (150)
T ss_dssp             HHHHHHHHTBCTTTSSBCSSEEECTT--SCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred             HHHhCccCCEeecCChhhcCCEEcCC--CCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence            4556778899999999999997 455  9999999998762    379999999864    47888998888664

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.68  E-value=3.8e-09  Score=89.42  Aligned_cols=68  Identities=22%  Similarity=0.477  Sum_probs=51.6

Q ss_pred             ccccCCCCeeeecccccccccccccccccCeecccCcccc----cCCCCCCccCCCC----ccchHHHHHhhhccc
Q 021991           45 YSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN----IRCLALEKVAESLEL  112 (304)
Q Consensus        45 ~~~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~----~r~~~le~~l~~l~v  112 (304)
                      ...+.+.+.+.|+||++.+.+|+...+|||.||..|+.++    ...||.||.++..    .+|..+++++..+.-
T Consensus        46 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~  121 (165)
T 2ckl_B           46 VSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP  121 (165)
T ss_dssp             ----CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred             cchhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence            3345677889999999999999743244999999999876    3569999999854    467889998888744

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.67  E-value=3e-09  Score=83.83  Aligned_cols=64  Identities=19%  Similarity=0.416  Sum_probs=50.7

Q ss_pred             ccCCCCeeeecccccccccccccccccCeecccCcccc---cCCCCCCccCCCC-------ccchHHHHHhhhc
Q 021991           47 NNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN-------IRCLALEKVAESL  110 (304)
Q Consensus        47 ~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~-------~r~~~le~~l~~l  110 (304)
                      .+++.+.+.|+||.+.+.+|+..-+|||+||..|+.++   ...||.||..+..       .+|..++++++.+
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~   82 (108)
T 2ckl_A            9 ITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKL   82 (108)
T ss_dssp             HHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHH
T ss_pred             hhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHH
Confidence            45678889999999999999732234999999999876   3689999999763       3567788877765

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=98.66  E-value=1e-09  Score=85.58  Aligned_cols=64  Identities=23%  Similarity=0.452  Sum_probs=47.7

Q ss_pred             ccccCCCCeeeecccccccccccccccccCeecccCcccc---c-CCCCCCccCCCC---ccchHHHHHhh
Q 021991           45 YSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV---H-NCCPTCRFDLGN---IRCLALEKVAE  108 (304)
Q Consensus        45 ~~~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~---~-~~CP~Cr~~~~~---~r~~~le~~l~  108 (304)
                      .....+.+.+.|+||++++.+|+..-+|||.||..|+.++   . ..||.||.++..   .+++.++.+++
T Consensus        14 ~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~   84 (100)
T 3lrq_A           14 QSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQ   84 (100)
T ss_dssp             HHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHH
T ss_pred             cccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHH
Confidence            3445678899999999999999641234999999999876   3 589999999864   34555444443

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.63  E-value=1.1e-08  Score=74.39  Aligned_cols=46  Identities=24%  Similarity=0.641  Sum_probs=38.7

Q ss_pred             CCCCeeeeccccccccccc-ccccccCeecccCcccc---cCCCCCCccCCC
Q 021991           49 GVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLG   96 (304)
Q Consensus        49 ~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~   96 (304)
                      ...+.+.|+||++.+.+|+ +.|  ||.||..|+.++   ...||.||..+.
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (71)
T 2d8t_A           11 PSLTVPECAICLQTCVHPVSLPC--KHVFCYLCVKGASWLGKRCALCRQEIP   60 (71)
T ss_dssp             SSSSCCBCSSSSSBCSSEEEETT--TEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred             cCCCCCCCccCCcccCCCEEccC--CCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence            4456788999999999996 556  999999999875   367999999875

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.62  E-value=9.3e-09  Score=81.79  Aligned_cols=47  Identities=30%  Similarity=0.778  Sum_probs=39.8

Q ss_pred             cCCCCeeeeccccccccccc-ccccccCeecccCccccc----CCCCCCccCCC
Q 021991           48 NGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRVH----NCCPTCRFDLG   96 (304)
Q Consensus        48 ~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~----~~CP~Cr~~~~   96 (304)
                      ..+.+.+.|+||.+.+.+|+ +.|  ||.||..|+.++.    ..||.||..+.
T Consensus        10 ~~~~~~~~C~iC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   61 (115)
T 3l11_A           10 IPSLSECQCGICMEILVEPVTLPC--NHTLCKPCFQSTVEKASLCCPFCRRRVS   61 (115)
T ss_dssp             CCCHHHHBCTTTCSBCSSCEECTT--SCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred             cCCCCCCCCccCCcccCceeEcCC--CCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence            45667899999999999997 555  9999999998762    47999999875

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.61  E-value=9.1e-09  Score=73.83  Aligned_cols=49  Identities=31%  Similarity=0.786  Sum_probs=40.5

Q ss_pred             cccCCCCeeeecccccccccc-------c-ccccccCeecccCcccc---cCCCCCCccCCC
Q 021991           46 SNNGVHELLECPVCTNLMYPP-------I-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLG   96 (304)
Q Consensus        46 ~~~~l~~~l~CpIC~~~l~~P-------i-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~   96 (304)
                      ..+.+.+.+.|+||++.+.+|       + ..|  ||.||..|+.++   ...||.||.++.
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~   67 (69)
T 2ea6_A            8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKIN   67 (69)
T ss_dssp             CCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSS--SCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             cccCCCCCCCCcccCccccccccccCCeEeCCC--CChhcHHHHHHHHHcCCCCCCCCCccC
Confidence            345677888999999999877       3 456  999999999876   468999999875

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.61  E-value=1.3e-08  Score=92.11  Aligned_cols=63  Identities=21%  Similarity=0.221  Sum_probs=52.4

Q ss_pred             cCCCCeeeeccccccccccc-ccccccCeecccCcccc----cCCCCCCccCCCC---ccchHHHHHhhhccc
Q 021991           48 NGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN---IRCLALEKVAESLEL  112 (304)
Q Consensus        48 ~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~---~r~~~le~~l~~l~v  112 (304)
                      .++++.|.||||.++|.+|| ..|  ||+||+.|+.++    ...||.|+.++..   .+|..++++++.+.-
T Consensus       203 ~~~~~~~~c~i~~~~~~dPv~~~~--gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~  273 (281)
T 2c2l_A          203 RDIPDYLCGKISFELMREPCITPS--GITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFIS  273 (281)
T ss_dssp             CCCCSTTBCTTTCSBCSSEEECSS--CCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHT
T ss_pred             CCCCcccCCcCcCCHhcCCeECCC--CCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHH
Confidence            45678899999999999997 456  999999999865    2349999999864   578999999887753

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.57  E-value=2.2e-08  Score=75.38  Aligned_cols=51  Identities=31%  Similarity=0.747  Sum_probs=41.8

Q ss_pred             ccccCCCCeeeeccccccccc----cc-ccccccCeecccCcccc------cCCCCCCccCCCC
Q 021991           45 YSNNGVHELLECPVCTNLMYP----PI-HQCPNGHTLCSNCKNRV------HNCCPTCRFDLGN   97 (304)
Q Consensus        45 ~~~~~l~~~l~CpIC~~~l~~----Pi-~qC~~GH~fC~~C~~~~------~~~CP~Cr~~~~~   97 (304)
                      ...+.+.+.+.|+||++.+.+    |+ +.|  ||.||..|+.++      ...||.||..+..
T Consensus         7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A            7 GNLDALREVLECPICMESFTEEQLRPKLLHC--GHTICRQCLEKLLASSINGVRCPFCSKITRI   68 (88)
T ss_dssp             CSCCCCCSCCBCTTTCCBCCTTSSCEEECSS--SCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred             cChhhccCCCCCccCCccccccCCCeEECCC--CChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence            344677888999999999998    85 566  999999999876      1589999998653

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.56  E-value=1.6e-09  Score=85.42  Aligned_cols=48  Identities=33%  Similarity=0.969  Sum_probs=39.5

Q ss_pred             cCCCCeeeeccccccccccc-ccccccCeecccCccccc------CCCCCCccCCCC
Q 021991           48 NGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRVH------NCCPTCRFDLGN   97 (304)
Q Consensus        48 ~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~------~~CP~Cr~~~~~   97 (304)
                      +.+.+.+.|+||++.+.+|+ +.|  ||.||..|+.++.      ..||.||.++..
T Consensus        16 ~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A           16 NAMQKILECPICLELIKEPVSTKC--DHIFCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (112)
T ss_dssp             HHHHHHTSCSSSCCCCSSCCBCTT--SCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             HhccCCCCCcccChhhcCeEECCC--CCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence            45567789999999999996 455  9999999998652      379999998763

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=2e-08  Score=77.48  Aligned_cols=64  Identities=23%  Similarity=0.409  Sum_probs=50.0

Q ss_pred             CCCCeeeecccccccccccccccccCeecccCccccc---------CCCCC--CccC-CCC---ccchHHHHHhhhccc
Q 021991           49 GVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVH---------NCCPT--CRFD-LGN---IRCLALEKVAESLEL  112 (304)
Q Consensus        49 ~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~~---------~~CP~--Cr~~-~~~---~r~~~le~~l~~l~v  112 (304)
                      ...+.|.||||+++|.+||..-.+||+||+.|+.++.         ..||.  |+.. +..   .+|.+|+++++.++-
T Consensus         3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~   81 (94)
T 2yu4_A            3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNK   81 (94)
T ss_dssp             SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHT
T ss_pred             CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHH
Confidence            4567899999999999998421239999999998752         38999  9866 543   579999999888753

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=3.1e-08  Score=68.69  Aligned_cols=45  Identities=29%  Similarity=0.772  Sum_probs=37.2

Q ss_pred             ccccCCCCeeeeccccccccccc-ccccccCeecccCcccc------cCCCCCC
Q 021991           45 YSNNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV------HNCCPTC   91 (304)
Q Consensus        45 ~~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~------~~~CP~C   91 (304)
                      ...+.+.+.+.|+||++.+.+|+ +.|  ||+||..|+.++      ...||.|
T Consensus         7 ~~~~~~~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A            7 GALENLQVEASCSVCLEYLKEPVIIEC--GHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SCSSCSCCCCBCSSSCCBCSSCCCCSS--CCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             hHhhccccCCCCccCCcccCccEeCCC--CCccCHHHHHHHHHhcCCCCCCCCC
Confidence            44567888899999999999996 455  999999999865      2578887

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.51  E-value=2.6e-08  Score=85.80  Aligned_cols=63  Identities=22%  Similarity=0.255  Sum_probs=52.4

Q ss_pred             cCCCCeeeecccccccccccccccccCeecccCcccc----cCCCCCCccCCCC---ccchHHHHHhhhcc
Q 021991           48 NGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN---IRCLALEKVAESLE  111 (304)
Q Consensus        48 ~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~---~r~~~le~~l~~l~  111 (304)
                      ..+++.|.||||.++|.+||.. ++||+||..|+.++    ...||.|+.++..   .+|.++.+++..+.
T Consensus       101 ~~ip~~f~CPI~~elm~DPV~~-~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~  170 (179)
T 2f42_A          101 REIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFI  170 (179)
T ss_dssp             CCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred             cCCcHhhcccCccccCCCCeEC-CCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHH
Confidence            5678999999999999999732 34999999999875    2359999999864   68899999888764

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=98.45  E-value=2.8e-08  Score=71.80  Aligned_cols=47  Identities=32%  Similarity=0.836  Sum_probs=38.7

Q ss_pred             CCCCeeeecccccccccc-------c-ccccccCeecccCcccc---cCCCCCCccCCCC
Q 021991           49 GVHELLECPVCTNLMYPP-------I-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN   97 (304)
Q Consensus        49 ~l~~~l~CpIC~~~l~~P-------i-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~   97 (304)
                      ...+.+.|+||++.+.+|       + ..|  ||.||..|+.++   ...||.||.++..
T Consensus         6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (71)
T 3ng2_A            6 RPSGTVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKINH   63 (71)
T ss_dssp             CCTTCCBCTTTCCBHHHHHTTTCCEEECTT--SCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred             CCCCCCCCcccChhhhccccccCCeEeCCC--CChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence            445678999999999887       3 356  999999999876   4789999998764

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.41  E-value=3.6e-08  Score=70.32  Aligned_cols=44  Identities=34%  Similarity=0.825  Sum_probs=36.3

Q ss_pred             Ceeeeccccc-cccccc-----ccccccCeecccCcccc----cCCCCCCccCCCC
Q 021991           52 ELLECPVCTN-LMYPPI-----HQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN   97 (304)
Q Consensus        52 ~~l~CpIC~~-~l~~Pi-----~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~   97 (304)
                      +.+.||||++ .+..|+     ..|  ||.||..|+.++    ...||.||.++..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   55 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVC--GHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTT--CCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCcCCcCCCCccCCCccCeecCCC--CCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence            4578999999 899883     356  999999999876    2579999998753

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.39  E-value=2.2e-08  Score=73.71  Aligned_cols=47  Identities=26%  Similarity=0.628  Sum_probs=40.7

Q ss_pred             cCCCCeeeeccccccccccc-ccccccCe-ecccCcccccCCCCCCccCCCC
Q 021991           48 NGVHELLECPVCTNLMYPPI-HQCPNGHT-LCSNCKNRVHNCCPTCRFDLGN   97 (304)
Q Consensus        48 ~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~-fC~~C~~~~~~~CP~Cr~~~~~   97 (304)
                      +.+.+.+.|+||++.+.+|+ +.|  ||. ||..|+.++ ..||.||.++..
T Consensus        19 ~~~~~~~~C~iC~~~~~~~~~~pC--gH~~~C~~C~~~~-~~CP~Cr~~i~~   67 (74)
T 4ic3_A           19 RRLQEEKLCKICMDRNIAIVFVPC--GHLVTCKQCAEAV-DKCPMCYTVITF   67 (74)
T ss_dssp             HHHHHHTBCTTTSSSBCCEEEETT--CCBCCCHHHHTTC-SBCTTTCCBCSE
T ss_pred             hcCccCCCCCCCCCCCCCEEEcCC--CChhHHHHhhhcC-ccCCCcCcCccC
Confidence            45567789999999999997 466  999 999999987 899999998764

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.37  E-value=1.3e-07  Score=68.96  Aligned_cols=51  Identities=22%  Similarity=0.476  Sum_probs=40.0

Q ss_pred             ccCCCCeeeeccccccccccc--ccccccCeecccCcccc---cCCCCCCccCCCC
Q 021991           47 NNGVHELLECPVCTNLMYPPI--HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN   97 (304)
Q Consensus        47 ~~~l~~~l~CpIC~~~l~~Pi--~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~   97 (304)
                      ..++.+...|+||++.+..+.  ...+|||.||..|+.++   ...||.||.++..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2ep4_A            9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ   64 (74)
T ss_dssp             CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred             cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence            356677789999999998774  22234999999999876   4689999998754

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.37  E-value=2.3e-08  Score=73.76  Aligned_cols=47  Identities=26%  Similarity=0.628  Sum_probs=40.3

Q ss_pred             cCCCCeeeeccccccccccc-ccccccCe-ecccCcccccCCCCCCccCCCC
Q 021991           48 NGVHELLECPVCTNLMYPPI-HQCPNGHT-LCSNCKNRVHNCCPTCRFDLGN   97 (304)
Q Consensus        48 ~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~-fC~~C~~~~~~~CP~Cr~~~~~   97 (304)
                      +++.+.+.|+||++.+.+|+ +.|  ||. ||..|+.+. ..||.||.++..
T Consensus        20 ~~~~~~~~C~IC~~~~~~~~~~pC--gH~~~C~~C~~~~-~~CP~Cr~~i~~   68 (75)
T 2ecg_A           20 RRLQEEKLCKICMDRNIAIVFVPC--GHLVTCKQCAEAV-DKCPMCYTVITF   68 (75)
T ss_dssp             HHHHHHHSCSSSCSSCCCBCCSSS--CCCCBCHHHHHHC-SBCTTTCCBCCC
T ss_pred             HcCCCCCCCCcCCCCCCCEEEecC--CCHHHHHHHhhCC-CCCccCCceecC
Confidence            45567789999999999997 477  999 999999875 799999998764

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.35  E-value=2.9e-07  Score=67.80  Aligned_cols=51  Identities=33%  Similarity=0.591  Sum_probs=39.3

Q ss_pred             ccCCCCeeeeccccccccccc--ccccccCeecccCcccc---cCCCCCCccCCCC
Q 021991           47 NNGVHELLECPVCTNLMYPPI--HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN   97 (304)
Q Consensus        47 ~~~l~~~l~CpIC~~~l~~Pi--~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~   97 (304)
                      .+.+.+.+.|+||++.+..+.  ..-+|||.||..|+.++   ...||.||..+..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   64 (78)
T 2ect_A            9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG   64 (78)
T ss_dssp             CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred             cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence            345667789999999998663  22234999999999875   4689999998754

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=98.34  E-value=6.1e-08  Score=68.35  Aligned_cols=44  Identities=34%  Similarity=0.952  Sum_probs=36.4

Q ss_pred             Ceeeecccccccccc-------c-ccccccCeecccCcccc---cCCCCCCccCCCC
Q 021991           52 ELLECPVCTNLMYPP-------I-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN   97 (304)
Q Consensus        52 ~~l~CpIC~~~l~~P-------i-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~   97 (304)
                      +.+.|+||++.+.+|       + ..|  ||.||..|+.++   ...||.||.++..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   56 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKINH   56 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETT--SCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCC--CCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence            457899999999876       3 356  999999999876   4689999998764

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.33  E-value=8.1e-08  Score=69.35  Aligned_cols=49  Identities=27%  Similarity=0.714  Sum_probs=40.2

Q ss_pred             ccCCCCeeeecccccccccccccccccCeecccCcccc---cCCCCCCccCCCC
Q 021991           47 NNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN   97 (304)
Q Consensus        47 ~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~   97 (304)
                      .+++.+.+.|+||++.+.+-++.|  ||.||..|+.++   ...||.||.++..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   60 (70)
T 2ecn_A            9 VKQLTDEEECCICMDGRADLILPC--AHSFCQKCIDKWSDRHRNCPICRLQMTG   60 (70)
T ss_dssp             CCCCCCCCCCSSSCCSCCSEEETT--TEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred             hhcCCCCCCCeeCCcCccCcccCC--CCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence            456777889999999999832566  999999999876   3689999998764

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.32  E-value=2.3e-07  Score=63.59  Aligned_cols=45  Identities=29%  Similarity=0.722  Sum_probs=35.8

Q ss_pred             CCCeeeeccccccccc---cc-cc-ccccCeecccCcccc---cCCCCCCccCCC
Q 021991           50 VHELLECPVCTNLMYP---PI-HQ-CPNGHTLCSNCKNRV---HNCCPTCRFDLG   96 (304)
Q Consensus        50 l~~~l~CpIC~~~l~~---Pi-~q-C~~GH~fC~~C~~~~---~~~CP~Cr~~~~   96 (304)
                      +.+...|+||++.+..   ++ +. |  ||.||..|+.++   ...||.||.++.
T Consensus         2 ~~~~~~C~IC~~~~~~~~~~~~~~~C--~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            2 MDDGVECAVCLAELEDGEEARFLPRC--GHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSS--CCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCcCccCCccccCCCceEECCCC--CCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            4566789999999986   43 33 5  999999999876   478999998763

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.29  E-value=3.9e-07  Score=66.11  Aligned_cols=47  Identities=30%  Similarity=0.615  Sum_probs=39.4

Q ss_pred             cCCCCeeeeccccccccccc-ccccccCe-ecccCcccccCCCCCCccCCCC
Q 021991           48 NGVHELLECPVCTNLMYPPI-HQCPNGHT-LCSNCKNRVHNCCPTCRFDLGN   97 (304)
Q Consensus        48 ~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~-fC~~C~~~~~~~CP~Cr~~~~~   97 (304)
                      ....+...|+||++...+++ +.|  ||. +|..|.... ..||.||.++..
T Consensus        10 ~~~~~~~~C~IC~~~~~~~v~~pC--gH~~~C~~C~~~~-~~CP~CR~~i~~   58 (68)
T 2ea5_A           10 PSEENSKDCVVCQNGTVNWVLLPC--RHTCLCDGCVKYF-QQCPMCRQFVQE   58 (68)
T ss_dssp             CSCCCSSCCSSSSSSCCCCEETTT--TBCCSCTTHHHHC-SSCTTTCCCCCC
T ss_pred             ccCCCCCCCCCcCcCCCCEEEECC--CChhhhHHHHhcC-CCCCCCCcchhc
Confidence            34455678999999999987 578  999 999999875 799999998864

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.26  E-value=4.9e-07  Score=66.17  Aligned_cols=47  Identities=28%  Similarity=0.613  Sum_probs=37.9

Q ss_pred             CCCCeeeecccccccccc--c--ccccccCeecccCcccc---cCCCCCCccCCCC
Q 021991           49 GVHELLECPVCTNLMYPP--I--HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN   97 (304)
Q Consensus        49 ~l~~~l~CpIC~~~l~~P--i--~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~   97 (304)
                      ...+...|+||++.+..+  +  +.|  ||.||..|+.++   ...||.||.++..
T Consensus        19 ~~~~~~~C~IC~~~~~~~~~~~~l~C--~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           19 HQSEQTLCVVCMCDFESRQLLRVLPC--NHEFHAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             CSSSCCEETTTTEECCBTCEEEEETT--TEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             ccCCCCCCeECCcccCCCCeEEEECC--CCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence            345667899999999876  2  355  999999999876   4789999998753

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.24  E-value=3e-07  Score=62.93  Aligned_cols=43  Identities=26%  Similarity=0.578  Sum_probs=34.7

Q ss_pred             Ceeeeccccccccc----cc-ccccccCeecccCcccc---cCCCCCCccCCC
Q 021991           52 ELLECPVCTNLMYP----PI-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLG   96 (304)
Q Consensus        52 ~~l~CpIC~~~l~~----Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~   96 (304)
                      +...|+||++.+.+    ++ +.|  ||.||..|+.++   ...||.||.++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPC--GHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTT--SCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCC--CCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            44679999999865    43 466  999999999876   478999998764

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.24  E-value=3.7e-07  Score=65.37  Aligned_cols=44  Identities=25%  Similarity=0.605  Sum_probs=36.5

Q ss_pred             Ceeeeccccccccccc--ccccccCeecccCcccc---cCCCCCCccCCCC
Q 021991           52 ELLECPVCTNLMYPPI--HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN   97 (304)
Q Consensus        52 ~~l~CpIC~~~l~~Pi--~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~   97 (304)
                      +...|+||++.+.+|+  ..|  ||.||..|+.++   ...||.||.++..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C--~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPC--LHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTT--TEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccccCCcEecCC--CCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            3457999999999874  456  999999999865   4789999998764

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.15  E-value=8.4e-07  Score=63.71  Aligned_cols=50  Identities=20%  Similarity=0.547  Sum_probs=37.2

Q ss_pred             cCCCCeeeeccccccccc--ccccccccCeecccCcccc---cCCCCCCccCCCC
Q 021991           48 NGVHELLECPVCTNLMYP--PIHQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN   97 (304)
Q Consensus        48 ~~l~~~l~CpIC~~~l~~--Pi~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~   97 (304)
                      ++..+...|+||++.+..  ++..-+|||.||..|+.++   ...||.||..+..
T Consensus         9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (69)
T 2kiz_A            9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA   63 (69)
T ss_dssp             CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred             CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence            345566789999998863  2222234999999999876   4789999998754

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.10  E-value=3.9e-07  Score=73.23  Aligned_cols=45  Identities=33%  Similarity=0.893  Sum_probs=37.9

Q ss_pred             CCeeeecccccccccc-------c-ccccccCeecccCcccc---cCCCCCCccCCCC
Q 021991           51 HELLECPVCTNLMYPP-------I-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN   97 (304)
Q Consensus        51 ~~~l~CpIC~~~l~~P-------i-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~   97 (304)
                      .+.+.|+||++.+.+|       + ..|  ||.||..|+.++   ...||.||..+..
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   60 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKINH   60 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETT--CCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred             CCCCCCcccChhhhCccccccCeEecCC--CChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence            4568899999999988       4 456  999999999876   4689999998864

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.09  E-value=5.5e-07  Score=81.62  Aligned_cols=64  Identities=19%  Similarity=0.344  Sum_probs=51.0

Q ss_pred             cccCCCCeeeecccccccccccc--cccccCeecccCccccc-----CCCCC--CccCCCC---ccchHHHHHhhhcc
Q 021991           46 SNNGVHELLECPVCTNLMYPPIH--QCPNGHTLCSNCKNRVH-----NCCPT--CRFDLGN---IRCLALEKVAESLE  111 (304)
Q Consensus        46 ~~~~l~~~l~CpIC~~~l~~Pi~--qC~~GH~fC~~C~~~~~-----~~CP~--Cr~~~~~---~r~~~le~~l~~l~  111 (304)
                      .+......+.||||+++|++||.  .|  ||+||+.|+.++.     ..||+  |+..+..   .+|..|.++++..+
T Consensus       174 ~v~~~~~el~CPIcl~~f~DPVts~~C--GHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k  249 (267)
T 3htk_C          174 QIEGGKIELTCPITCKPYEAPLISRKC--NHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAK  249 (267)
T ss_dssp             CCCSSBCCSBCTTTSSBCSSEEEESSS--CCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHH
T ss_pred             eecCCceeeECcCccCcccCCeeeCCC--CCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHH
Confidence            34556788999999999999984  56  9999999998652     36999  9998754   57888888776643

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.08  E-value=2.7e-07  Score=68.88  Aligned_cols=46  Identities=30%  Similarity=0.775  Sum_probs=39.2

Q ss_pred             CCCCeeeeccccccccccc-ccccccCe-ecccCcccccCCCCCCccCCCC
Q 021991           49 GVHELLECPVCTNLMYPPI-HQCPNGHT-LCSNCKNRVHNCCPTCRFDLGN   97 (304)
Q Consensus        49 ~l~~~l~CpIC~~~l~~Pi-~qC~~GH~-fC~~C~~~~~~~CP~Cr~~~~~   97 (304)
                      .+.+...|+||++.+.+|+ +.|  ||. ||..|..++ ..||.||.++..
T Consensus        14 ~l~~~~~C~IC~~~~~~~v~~pC--gH~~~C~~C~~~~-~~CP~Cr~~i~~   61 (79)
T 2yho_A           14 KLKEAMLCMVCCEEEINSTFCPC--GHTVCCESCAAQL-QSCPVCRSRVEH   61 (79)
T ss_dssp             HHHHHTBCTTTSSSBCCEEEETT--CBCCBCHHHHTTC-SBCTTTCCBCCE
T ss_pred             cCCCCCEeEEeCcccCcEEEECC--CCHHHHHHHHHhc-CcCCCCCchhhC
Confidence            4456678999999999997 467  999 999999987 699999998764

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.08  E-value=8.5e-07  Score=67.64  Aligned_cols=45  Identities=24%  Similarity=0.586  Sum_probs=36.3

Q ss_pred             CCCeeeeccccccccc---cc-ccccccCeecccCcccc---cCCCCCCccCCC
Q 021991           50 VHELLECPVCTNLMYP---PI-HQCPNGHTLCSNCKNRV---HNCCPTCRFDLG   96 (304)
Q Consensus        50 l~~~l~CpIC~~~l~~---Pi-~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~   96 (304)
                      ..+...|+||++.+..   ++ +.|  ||.||..|+.++   ...||.||..+.
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~l~C--~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~   88 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATELPC--HHYFHKPCVSIWLQKSGTCPVCRCMFP   88 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEEETT--TEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred             cCCCCCCcccChhhcCCCcEEecCC--CChHHHHHHHHHHHcCCcCcCcCccCC
Confidence            4567789999998876   43 455  999999999876   468999999864

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=97.98  E-value=1.8e-06  Score=68.07  Aligned_cols=43  Identities=21%  Similarity=0.524  Sum_probs=34.2

Q ss_pred             eeeeccccccccccc-------------------ccccccCeecccCccccc--------CCCCCCccCCCC
Q 021991           53 LLECPVCTNLMYPPI-------------------HQCPNGHTLCSNCKNRVH--------NCCPTCRFDLGN   97 (304)
Q Consensus        53 ~l~CpIC~~~l~~Pi-------------------~qC~~GH~fC~~C~~~~~--------~~CP~Cr~~~~~   97 (304)
                      ...|+||++.|..|.                   ..|  ||.||..|+.++.        ..||.||..+..
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C--~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKC--SHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSS--CCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCCC--CCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            358999999997652                   345  9999999998652        479999998754

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=97.90  E-value=2.2e-06  Score=81.01  Aligned_cols=47  Identities=28%  Similarity=0.685  Sum_probs=40.6

Q ss_pred             cCCCCeeeeccccccccccc-ccccccCe-ecccCcccccCCCCCCccCCCC
Q 021991           48 NGVHELLECPVCTNLMYPPI-HQCPNGHT-LCSNCKNRVHNCCPTCRFDLGN   97 (304)
Q Consensus        48 ~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~-fC~~C~~~~~~~CP~Cr~~~~~   97 (304)
                      +.+.+.+.|+||.+.+.+|+ +.|  ||. ||..|+.++ ..||.||.++..
T Consensus       290 ~~l~~~~~C~IC~~~~~~~v~lpC--gH~~fC~~C~~~~-~~CP~CR~~i~~  338 (345)
T 3t6p_A          290 RRLQEERTCKVCMDKEVSVVFIPC--GHLVVCQECAPSL-RKCPICRGIIKG  338 (345)
T ss_dssp             HHHHTTCBCTTTSSSBCCEEEETT--CCEEECTTTGGGC-SBCTTTCCBCCE
T ss_pred             HhCcCCCCCCccCCcCCceEEcCC--CChhHhHHHHhcC-CcCCCCCCCccC
Confidence            34567789999999999997 466  999 999999987 899999998764

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=97.80  E-value=3.5e-06  Score=60.11  Aligned_cols=44  Identities=23%  Similarity=0.598  Sum_probs=36.3

Q ss_pred             Ceeeecccccccccccc---cccccCe-ecccCcccc---cCCCCCCccCCCC
Q 021991           52 ELLECPVCTNLMYPPIH---QCPNGHT-LCSNCKNRV---HNCCPTCRFDLGN   97 (304)
Q Consensus        52 ~~l~CpIC~~~l~~Pi~---qC~~GH~-fC~~C~~~~---~~~CP~Cr~~~~~   97 (304)
                      +...|+||++...++++   .|  ||. +|..|..++   ...||.||.++..
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pC--gH~~~C~~C~~~~~~~~~~CPiCR~~i~~   57 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKT--GHLMACFTCAKKLKKRNKPCPVCRQPIQM   57 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTE--EEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred             CcCCCCcCCCCCCCEEEECCCC--CChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence            44579999999999974   56  999 899999876   3579999998753

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=97.75  E-value=6.1e-06  Score=78.90  Aligned_cols=46  Identities=24%  Similarity=0.649  Sum_probs=38.4

Q ss_pred             CCCeeeeccccccccccc-ccccccCeecccCcccc----cCCCCCCccCCCC
Q 021991           50 VHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN   97 (304)
Q Consensus        50 l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~   97 (304)
                      ......|+||.+.+.+|+ ..|  ||.||..|+..+    ...||.||.++..
T Consensus       329 ~~~~~~C~ICle~~~~pv~lpC--GH~FC~~Ci~~wl~~~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          329 GSTFQLCKICAENDKDVKIEPC--GHLMCTSCLTSWQESEGQGCPFCRCEIKG  379 (389)
T ss_dssp             TTSSSBCTTTSSSBCCEEEETT--CCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred             cCCCCCCCccCcCCCCeEEeCC--CChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence            444579999999999996 567  999999999764    3789999998764

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=97.73  E-value=4.6e-06  Score=59.32  Aligned_cols=43  Identities=26%  Similarity=0.649  Sum_probs=35.5

Q ss_pred             eeeeccccccccccc-c--cccccCe-ecccCccccc---CCCCCCccCCCC
Q 021991           53 LLECPVCTNLMYPPI-H--QCPNGHT-LCSNCKNRVH---NCCPTCRFDLGN   97 (304)
Q Consensus        53 ~l~CpIC~~~l~~Pi-~--qC~~GH~-fC~~C~~~~~---~~CP~Cr~~~~~   97 (304)
                      ...|+||++...+++ +  .|  ||. +|..|..++.   ..||.||.++..
T Consensus         7 ~~~C~IC~~~~~~~~~~~~pC--gH~~~C~~C~~~~~~~~~~CPiCR~~i~~   56 (63)
T 2vje_B            7 LKPCSLCEKRPRDGNIIHGRT--GHLVTCFHCARRLKKAGASCPICKKEIQL   56 (63)
T ss_dssp             GSBCTTTSSSBSCEEEEETTE--EEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred             CCCCcccCCcCCCeEEEecCC--CCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence            347999999999885 4  56  998 9999998762   489999998753

>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.72  E-value=6.5e-06  Score=63.86  Aligned_cols=54  Identities=20%  Similarity=0.341  Sum_probs=48.1

Q ss_pred             ccccCCCCCCCCccccCccchhccccccCcccccCCCCCCCCccccChhhHHHHhhh
Q 021991          110 LELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKD  166 (304)
Q Consensus       110 l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~p~~CP~~g~~C~~~g~~~~L~~Hl~~  166 (304)
                      ..+.|||   .|...+...++++|...|+...+.|++...||.+++.+.+|..|++.
T Consensus        36 ~~i~CP~---~Cga~i~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~   89 (100)
T 2yre_A           36 DLIGCPL---VCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEM   89 (100)
T ss_dssp             CEEECTT---CCSCEEEHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHT
T ss_pred             eeeeCCc---ccCCeeehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhh
Confidence            4788987   69889999999999999999999999988889999999999999874

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=97.71  E-value=2.4e-05  Score=57.31  Aligned_cols=49  Identities=20%  Similarity=0.354  Sum_probs=45.0

Q ss_pred             ccccCCCCCCCCccccCccchhcccc-ccCcccccCCCCCCCCccccChhhHHHHhh
Q 021991          110 LELPCKYQSLGCHDIFPYYGKLKHEQ-HCRFRPYNCPYAGSECSVTGDIPTLVAHLK  165 (304)
Q Consensus       110 l~v~C~~~~~GC~~~~~~~~~~~He~-~C~~~p~~CP~~g~~C~~~g~~~~L~~Hl~  165 (304)
                      ..+.|++   ||+..+...++++|++ +|+++++.|++    |+....+.+|..|..
T Consensus        15 ~~v~C~~---~C~~~v~r~~l~~H~~~~C~~r~v~C~~----C~~~~~~~~l~~H~~   64 (76)
T 2yuc_A           15 NVIPCPN---RCPMKLSRRDLPAHLQHDCPKRRLKCEF----CGCDFSGEAYESHEG   64 (76)
T ss_dssp             SCCBCTT---CCSCBCCSSSSTTTTTTSCTTSCCCCSS----SCCCCCHHHHHHTTT
T ss_pred             cccCCCc---cccHHhhHhHHHhhCHhhCCCcceECCC----CCCccCHHHHHHHHh
Confidence            5788886   8999999999999998 99999999997    999999999999984

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=97.68  E-value=5.7e-06  Score=66.25  Aligned_cols=48  Identities=29%  Similarity=0.694  Sum_probs=38.3

Q ss_pred             CCCeeeeccccccccccc------ccccccCeecccCcccc---cCCCCCCccCCCC
Q 021991           50 VHELLECPVCTNLMYPPI------HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN   97 (304)
Q Consensus        50 l~~~l~CpIC~~~l~~Pi------~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~   97 (304)
                      ..+.+.|+||.+.+..|.      ...++||.||..|+.++   ...||.||.++..
T Consensus        69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~  125 (133)
T 4ap4_A           69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH  125 (133)
T ss_dssp             SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence            356788999999998761      23445999999999876   4789999998764

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.67  E-value=1.5e-05  Score=59.44  Aligned_cols=45  Identities=22%  Similarity=0.454  Sum_probs=34.0

Q ss_pred             Ceeeecccccccccc--------------cccccccCeecccCcccc---cCCCCCCccCCC
Q 021991           52 ELLECPVCTNLMYPP--------------IHQCPNGHTLCSNCKNRV---HNCCPTCRFDLG   96 (304)
Q Consensus        52 ~~l~CpIC~~~l~~P--------------i~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~   96 (304)
                      +.-.|+||++.+.++              +....+||.|+..|+.++   ...||.||.++.
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   75 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV   75 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence            445699999998763              222224999999999876   468999999875

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.55  E-value=7.7e-06  Score=62.51  Aligned_cols=41  Identities=22%  Similarity=0.526  Sum_probs=32.7

Q ss_pred             Ceeeeccccccccccc-c---cccccCeecccCcccc-----------cCCCCC--CccC
Q 021991           52 ELLECPVCTNLMYPPI-H---QCPNGHTLCSNCKNRV-----------HNCCPT--CRFD   94 (304)
Q Consensus        52 ~~l~CpIC~~~l~~Pi-~---qC~~GH~fC~~C~~~~-----------~~~CP~--Cr~~   94 (304)
                      +.+.|+||++.+..|. +   .|  ||.||..|+...           ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~C--gH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQC--QCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTT--TEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCC--CCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            4678999999999885 3   36  999999998753           136998  9887

>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.49  E-value=2.9e-05  Score=60.22  Aligned_cols=57  Identities=21%  Similarity=0.366  Sum_probs=43.1

Q ss_pred             CCC-CCccCCCCccchHHH--HHhhhccccCCCCCCCCccccCccchhccccccCcccccCC
Q 021991           87 CCP-TCRFDLGNIRCLALE--KVAESLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCP  145 (304)
Q Consensus        87 ~CP-~Cr~~~~~~r~~~le--~~l~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~p~~CP  145 (304)
                      .|| .|...+.  |...-+  .+.-...++|+|+.+||+..+...++.+||+.|+-..+.|.
T Consensus        39 ~CP~~Cga~i~--rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~CPas~v~~~   98 (100)
T 2yre_A           39 GCPLVCGAVFH--SCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEMCPASVSGPS   98 (100)
T ss_dssp             ECTTCCSCEEE--HHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHTCGGGCCCCC
T ss_pred             eCCcccCCeee--hhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhhCCceeEecC
Confidence            477 6755322  222211  33556789999999999999999999999999999888775

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=97.19  E-value=6.5e-05  Score=53.11  Aligned_cols=45  Identities=9%  Similarity=0.079  Sum_probs=36.6

Q ss_pred             eeeecccccccccccccccccCeecccCcccc---cCCCCCCccCCCC
Q 021991           53 LLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN   97 (304)
Q Consensus        53 ~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~   97 (304)
                      .|.|||++++|.+|+..-.+||+|++.|+.++   ...||..+.++..
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~   50 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI   50 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence            47899999999999743145999999999987   3679999998753

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=97.09  E-value=0.00012  Score=57.49  Aligned_cols=45  Identities=18%  Similarity=0.369  Sum_probs=34.4

Q ss_pred             eeeecccccccccc-----------------cccccccCeecccCcccc---cCCCCCCccCCCC
Q 021991           53 LLECPVCTNLMYPP-----------------IHQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN   97 (304)
Q Consensus        53 ~l~CpIC~~~l~~P-----------------i~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~   97 (304)
                      .-.|+||++.+..+                 +..-+|||.|+..|+.++   ...||.||..+..
T Consensus        37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~  101 (106)
T 3dpl_R           37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF  101 (106)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence            34699999998865                 211234999999999976   4789999998653

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=96.99  E-value=0.00011  Score=58.82  Aligned_cols=43  Identities=19%  Similarity=0.364  Sum_probs=0.0

Q ss_pred             eeeccccccccccc-----------------ccccccCeecccCcccc---cCCCCCCccCCC
Q 021991           54 LECPVCTNLMYPPI-----------------HQCPNGHTLCSNCKNRV---HNCCPTCRFDLG   96 (304)
Q Consensus        54 l~CpIC~~~l~~Pi-----------------~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~   96 (304)
                      -.|+||++.+..+-                 ...+|||.|+..|+.++   ...||.||.++.
T Consensus        49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            47999999997642                 11234999999999986   478999999864

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.84  E-value=0.0002  Score=60.29  Aligned_cols=51  Identities=20%  Similarity=0.380  Sum_probs=44.7

Q ss_pred             hhccccCCCCCCCCccccCccchhccc-cccCcccccCCCCCCCCccccChhhHHHHhhh
Q 021991          108 ESLELPCKYQSLGCHDIFPYYGKLKHE-QHCRFRPYNCPYAGSECSVTGDIPTLVAHLKD  166 (304)
Q Consensus       108 ~~l~v~C~~~~~GC~~~~~~~~~~~He-~~C~~~p~~CP~~g~~C~~~g~~~~L~~Hl~~  166 (304)
                      .-..++|+    ||++.+...++..|+ ..|+++++.|++    |+......+|..|...
T Consensus       107 ~~~~v~C~----~C~~~~~r~~l~~H~~~~C~~r~~~C~~----C~~~~~~~~l~~H~~~  158 (170)
T 3hcs_A          107 EFALMDCP----QCQRPFQKFHINIHILKDCPRRQVSCDN----CAASMAFEDKEIHDQN  158 (170)
T ss_dssp             TTSEEECT----TTCCEEEGGGHHHHHHHTCTTCEEECTT----TCCEEEGGGHHHHHTT
T ss_pred             CceeeECC----CCChHHHHHHHHHHhhhhCCCCCeECCC----CCCccCHHHHHhHHHh
Confidence            34567786    899999999999999 599999999996    9999999999999854

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=96.48  E-value=0.0014  Score=50.68  Aligned_cols=79  Identities=22%  Similarity=0.388  Sum_probs=52.9

Q ss_pred             eecccccccccc--cccccccCeecccCcccc----cCCCCCCccCCCCccchHHHHHhhhccccCCCCCCCCccccCcc
Q 021991           55 ECPVCTNLMYPP--IHQCPNGHTLCSNCKNRV----HNCCPTCRFDLGNIRCLALEKVAESLELPCKYQSLGCHDIFPYY  128 (304)
Q Consensus        55 ~CpIC~~~l~~P--i~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~~r~~~le~~l~~l~v~C~~~~~GC~~~~~~~  128 (304)
                      -|++|..++..-  +..|  .|.||.+|...+    .+.||.|+.++.......+     .-.+-|+.            
T Consensus         3 fC~~C~~Pi~iygRmIPC--kHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~-----~~if~C~~------------   63 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPC--KHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTR-----GSLFMCSI------------   63 (101)
T ss_dssp             BCTTTCSBCSEEEEEETT--CCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEG-----GGCCCCCC------------
T ss_pred             ecCccCCCeEEEeeeccc--cccHHHHHHHHHHhccCCCCcCcCCeeeeeEEecc-----CCEEECCC------------
Confidence            489999988754  3577  999999999653    3689999998865332111     12233431            


Q ss_pred             chhccccccCcccccCCCCCCCCcccc-ChhhHHHHhhhhCCCC
Q 021991          129 GKLKHEQHCRFRPYNCPYAGSECSVTG-DIPTLVAHLKDDHQVD  171 (304)
Q Consensus       129 ~~~~He~~C~~~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~~  171 (304)
                                       ..  +|.... +..+|..|....|...
T Consensus        64 -----------------~~--~CkrtyLs~rdlqaHI~~~H~~~   88 (101)
T 3vk6_A           64 -----------------VQ--GCKRTYLSQRDLQAHINHRHMRA   88 (101)
T ss_dssp             -----------------CC--CCCCCCSSHHHHHHHHHHHTTTS
T ss_pred             -----------------CC--CHHHHhcCHHHHHHHHHHHhhhc
Confidence                             21  355443 5689999999999743

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=96.41  E-value=0.00093  Score=48.62  Aligned_cols=42  Identities=29%  Similarity=0.483  Sum_probs=36.4

Q ss_pred             ccchhccccccCcccccCCCCCCCCccccChhhHHHHhhhhCCCC
Q 021991          127 YYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVD  171 (304)
Q Consensus       127 ~~~~~~He~~C~~~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~~  171 (304)
                      ..+++.|++.|+|+++.||.   +|+....+.+|..|+.......
T Consensus         2 ~~~l~~H~~~C~~~~v~C~~---~C~~~v~r~~l~~H~~~~C~~r   43 (76)
T 2yuc_A            2 SSGSSGHLNTCSFNVIPCPN---RCPMKLSRRDLPAHLQHDCPKR   43 (76)
T ss_dssp             CCSCSCCCCCCCCSCCBCTT---CCSCBCCSSSSTTTTTTSCTTS
T ss_pred             chHHHHHHHHCCCcccCCCc---cccHHhhHhHHHhhCHhhCCCc
Confidence            35788999999999999996   4999999999999998766644

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.33  E-value=0.00033  Score=51.03  Aligned_cols=49  Identities=20%  Similarity=0.275  Sum_probs=42.4

Q ss_pred             ccccCCCCCCCCccccCccchhccccccCcccccCCCCCCCCccccChhhHHHHhhh
Q 021991          110 LELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKD  166 (304)
Q Consensus       110 l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~p~~CP~~g~~C~~~g~~~~L~~Hl~~  166 (304)
                      -++.|++    |...+...++..|+..|+.+|+.|+.    |+....+.+|..|+..
T Consensus        16 r~~~C~~----C~~~~~~~~L~~H~~~c~~~~~~C~~----C~~~~~~~~l~~H~~~   64 (75)
T 2d9k_A           16 RLAVCQH----CDLELSILKLKEHEDYCGARTELCGN----CGRNVLVKDLKTHPEV   64 (75)
T ss_dssp             CCEECSS----SCCEECHHHHHHHHHHHHHCEEECSS----SCCEEETTGGGTHHHH
T ss_pred             cccCCcc----cChHhhHHHHHHHHhHcCCCceEccc----CCCcCcHHHHHHHHHH
Confidence            4567775    88899999999999999999999996    8888888999999865

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.17  E-value=0.017  Score=42.21  Aligned_cols=44  Identities=20%  Similarity=0.549  Sum_probs=33.6

Q ss_pred             eeeecccccccccccccc-cccCeecccCcccc---c--CCCCCCccCCCC
Q 021991           53 LLECPVCTNLMYPPIHQC-PNGHTLCSNCKNRV---H--NCCPTCRFDLGN   97 (304)
Q Consensus        53 ~l~CpIC~~~l~~Pi~qC-~~GH~fC~~C~~~~---~--~~CP~Cr~~~~~   97 (304)
                      .-.|.||++++.+- ..| .|+|.|=..|+.++   .  ..||.|+.++..
T Consensus        15 i~~C~IC~~~i~~g-~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           15 VKICNICHSLLIQG-QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             SCBCSSSCCBCSSS-EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             CCcCcchhhHcccC-CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            34699999999843 345 45899888899865   2  689999998753

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.74  E-value=0.014  Score=43.24  Aligned_cols=45  Identities=20%  Similarity=0.537  Sum_probs=34.0

Q ss_pred             Ceeeecccccccc--ccc-ccccc---cCeecccCccccc-----CCCCCCccCCC
Q 021991           52 ELLECPVCTNLMY--PPI-HQCPN---GHTLCSNCKNRVH-----NCCPTCRFDLG   96 (304)
Q Consensus        52 ~~l~CpIC~~~l~--~Pi-~qC~~---GH~fC~~C~~~~~-----~~CP~Cr~~~~   96 (304)
                      +...|.||++-+.  .++ ..|.+   +|.|-..|+.++.     ..||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~   69 (80)
T 2d8s_A           14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI   69 (80)
T ss_dssp             TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred             CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence            3457999997764  454 46754   3999999999872     48999999875

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=94.11  E-value=0.011  Score=55.45  Aligned_cols=46  Identities=24%  Similarity=0.544  Sum_probs=36.3

Q ss_pred             CCeeeeccccccccc----cccccc---ccCeecccCccccc--------------CCCCCCccCCC
Q 021991           51 HELLECPVCTNLMYP----PIHQCP---NGHTLCSNCKNRVH--------------NCCPTCRFDLG   96 (304)
Q Consensus        51 ~~~l~CpIC~~~l~~----Pi~qC~---~GH~fC~~C~~~~~--------------~~CP~Cr~~~~   96 (304)
                      ...-.|+||+..+.+    |...|.   |||.|=..|+.++.              +.||.||.++.
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            456689999999886    555564   69999999998761              46999999865

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=92.02  E-value=0.32  Score=35.94  Aligned_cols=33  Identities=27%  Similarity=0.670  Sum_probs=27.8

Q ss_pred             CCCeeeeccccccccccc-ccccc--cCeecccCcc
Q 021991           50 VHELLECPVCTNLMYPPI-HQCPN--GHTLCSNCKN   82 (304)
Q Consensus        50 l~~~l~CpIC~~~l~~Pi-~qC~~--GH~fC~~C~~   82 (304)
                      ....|.|.+|.+-|.+-- +||+.  +|.||-.|-.
T Consensus        12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr   47 (93)
T 2cs3_A           12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSR   47 (93)
T ss_dssp             SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHH
T ss_pred             CCCeeEeecchhhhccCceeeCCCccCCeeeccccH
Confidence            467789999999999875 69984  8999999964

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=91.48  E-value=0.085  Score=41.28  Aligned_cols=64  Identities=13%  Similarity=0.114  Sum_probs=41.8

Q ss_pred             HHHHHhhhccccCCCCCCCCccccCccchhcc---ccccCcccccCCCCCCCCccccChhhHHHHhhhhCCCC
Q 021991          102 ALEKVAESLELPCKYQSLGCHDIFPYYGKLKH---EQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVD  171 (304)
Q Consensus       102 ~le~~l~~l~v~C~~~~~GC~~~~~~~~~~~H---e~~C~~~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~~  171 (304)
                      -+.+.+..-...||.    |...+...++..-   ++.=.-..+.||+.  +|+|.+...+|..|++..+...
T Consensus        44 Ci~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n~--gC~~~~~~~~l~~H~~~c~~~~  110 (118)
T 3hct_A           44 CIIKSIRDAGHKCPV----DNEILLENQLFPDNFAKREILSLMVKCPNE--GCLHKMELRHLEDHQAHCEFAL  110 (118)
T ss_dssp             HHHHHHHHHCSBCTT----TCCBCCGGGCEECHHHHHHHHTSEEECSST--TCCCEEEGGGSGGGTSSSCC--
T ss_pred             HHHHHHhhCCCCCCC----CCCCcCHHhcccCHHHHHHHccceeECCCC--CCCCEEeeHHHHHHHHHchhhh
Confidence            355555554558986    8877766543211   11222356889975  5999999999999998877643

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.96  E-value=0.13  Score=36.81  Aligned_cols=33  Identities=30%  Similarity=0.507  Sum_probs=29.9

Q ss_pred             cchhcccc-ccCcccccCCCCCCCCccccChhhHHHHh
Q 021991          128 YGKLKHEQ-HCRFRPYNCPYAGSECSVTGDIPTLVAHL  164 (304)
Q Consensus       128 ~~~~~He~-~C~~~p~~CP~~g~~C~~~g~~~~L~~Hl  164 (304)
                      .++..|+. .|+++|+.|++    |+......+|..|.
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~----C~~~~~~~~L~~H~   36 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQH----CDLELSILKLKEHE   36 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSS----SCCEECHHHHHHHH
T ss_pred             hHHHhhCcccCCCcccCCcc----cChHhhHHHHHHHH
Confidence            46889986 89999999996    99999999999998

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=89.95  E-value=0.29  Score=37.88  Aligned_cols=75  Identities=12%  Similarity=0.195  Sum_probs=48.5

Q ss_pred             CCCCCCccCCCC---cc------chHHHHHhhhccccCCCCCCCCccccCccchhcc----ccccCcccccCCCCCCCCc
Q 021991           86 NCCPTCRFDLGN---IR------CLALEKVAESLELPCKYQSLGCHDIFPYYGKLKH----EQHCRFRPYNCPYAGSECS  152 (304)
Q Consensus        86 ~~CP~Cr~~~~~---~r------~~~le~~l~~l~v~C~~~~~GC~~~~~~~~~~~H----e~~C~~~p~~CP~~g~~C~  152 (304)
                      ..||+|...+..   .+      ..-+.+.+......||.    |...+...++...    .+.=.-..+.||+.  ||+
T Consensus        24 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~--gC~   97 (116)
T 1rmd_A           24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPS----CRYPCFPTDLESPVKSFLNILNSLMVKCPAQ--DCN   97 (116)
T ss_dssp             TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTT----TCCBCCGGGCBCCCHHHHHHHHHCEEECCST--TCC
T ss_pred             CCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCC----CCCCCCHhhccccHHHHHHHHHHhcCCCCCC--CCc
Confidence            457777766543   11      12356666555667886    8887776554321    12223346789986  599


Q ss_pred             cccChhhHHHHhhh
Q 021991          153 VTGDIPTLVAHLKD  166 (304)
Q Consensus       153 ~~g~~~~L~~Hl~~  166 (304)
                      |.+...++..|+..
T Consensus        98 ~~~~~~~~~~H~~~  111 (116)
T 1rmd_A           98 EEVSLEKYNHHVSS  111 (116)
T ss_dssp             CEEEHHHHHHHHHT
T ss_pred             chhhHhHHHHHHHH
Confidence            99999999999975

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=89.02  E-value=0.23  Score=36.05  Aligned_cols=46  Identities=24%  Similarity=0.273  Sum_probs=28.7

Q ss_pred             CccccCc-cchhccccccCc---ccccCCCCCCCCcccc-ChhhHHHHhhhhCCC
Q 021991          121 CHDIFPY-YGKLKHEQHCRF---RPYNCPYAGSECSVTG-DIPTLVAHLKDDHQV  170 (304)
Q Consensus       121 C~~~~~~-~~~~~He~~C~~---~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~  170 (304)
                      |...+.. ..+..|+..-.-   .++.|+.    |+... ....|..|++..|..
T Consensus        41 C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~----C~~~f~~~~~L~~H~~~~H~~   91 (95)
T 2yt9_A           41 CGLRFKRKDRMSYHVRSHDGSVGKPYICQS----CGKGFSRPDHLNGHIKQVHSG   91 (95)
T ss_dssp             SCCEESCHHHHHHHHHHHCCCCCSSBCCSS----SCCCBSSHHHHHHHHHHTSCC
T ss_pred             CCCccCCHHHHHHHHHHhcCCCCCceECCC----ccchhCCHHHHHHHHHHhcCC
Confidence            5444432 234455543222   6788986    77765 457899999988874

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.87  E-value=0.13  Score=35.26  Aligned_cols=50  Identities=34%  Similarity=0.685  Sum_probs=34.4

Q ss_pred             cccCCCCCCCCccccCccchhccccccCcccccCC-CCCCCCcccc-ChhhHHHHhhhhC
Q 021991          111 ELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCP-YAGSECSVTG-DIPTLVAHLKDDH  168 (304)
Q Consensus       111 ~v~C~~~~~GC~~~~~~~~~~~He~~C~~~p~~CP-~~g~~C~~~g-~~~~L~~Hl~~~H  168 (304)
                      ++.|+.    |+..+....+..|+..+.-+|+.|+ .    |+... .+..|..|++...
T Consensus        10 ~~~C~~----C~k~f~~~~L~~H~~~~~~~p~~C~~~----C~k~f~~~~~L~~H~~~hc   61 (66)
T 2eod_A           10 TQPCTY----CTKEFVFDTIQSHQYQCPRLPVACPNQ----CGVGTVAREDLPGHLKDSC   61 (66)
T ss_dssp             EEECSS----SCCEEEHHHHHHHHHHCSSSEEECTTC----CSCCEEETTTHHHHHHTTS
T ss_pred             Ceeccc----cCCccCHHHHHHHHHHcCCcCccCCcc----cCcccccHHHHHHHHHhhc
Confidence            455654    7766666667788877778888888 4    77653 4458888876533

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=88.80  E-value=0.099  Score=39.62  Aligned_cols=32  Identities=19%  Similarity=0.560  Sum_probs=24.7

Q ss_pred             Ceeeeccccc-ccccccccc-cccCeecccCccc
Q 021991           52 ELLECPVCTN-LMYPPIHQC-PNGHTLCSNCKNR   83 (304)
Q Consensus        52 ~~l~CpIC~~-~l~~Pi~qC-~~GH~fC~~C~~~   83 (304)
                      +.+.|++|.+ ++.+|+..| .+||.||..|+..
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~   35 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA   35 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence            4578999996 577887433 2399999999986

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=84.45  E-value=0.72  Score=34.32  Aligned_cols=37  Identities=24%  Similarity=0.437  Sum_probs=24.0

Q ss_pred             hhccccccCcccccCCCCCCCCcccc-ChhhHHHHhhhhCCC
Q 021991          130 KLKHEQHCRFRPYNCPYAGSECSVTG-DIPTLVAHLKDDHQV  170 (304)
Q Consensus       130 ~~~He~~C~~~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~  170 (304)
                      +..|+.--.-+++.|+.    |+... ....|..|++..|..
T Consensus        58 l~~H~~H~~~~~~~C~~----C~~~f~~~~~L~~H~~~~H~~   95 (107)
T 1wjp_A           58 KQEHESKCEYKKLTCLE----CMRTFKSSFSIWRHQVEVHNQ   95 (107)
T ss_dssp             HHHHHHHCSTGGGEEGG----GTEECSSHHHHHHHHHHTSCC
T ss_pred             HHHHHHcCCCCCccCcc----ccchhCCHHHHHHHHHHHcCC
Confidence            34444322335778875    77765 447899999878864

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=81.98  E-value=1  Score=33.99  Aligned_cols=106  Identities=20%  Similarity=0.297  Sum_probs=65.3

Q ss_pred             Ceeeeccccccccccc-ccccccCeecccCcccccCCCCCCccCCCCccchHHHHH-----hhhccccCCCCCCCCcccc
Q 021991           52 ELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRVHNCCPTCRFDLGNIRCLALEKV-----AESLELPCKYQSLGCHDIF  125 (304)
Q Consensus        52 ~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~~~CP~Cr~~~~~~r~~~le~~-----l~~l~v~C~~~~~GC~~~~  125 (304)
                      ..+.|++|...|.... +.   -|.-  .-.......|+.|...+....++..-..     ...-.+.|+.    |+..+
T Consensus         6 ~~~~C~~C~~~f~~~~~l~---~H~~--~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~----C~~~f   76 (124)
T 2dlq_A            6 SGVECPTCHKKFLSKYYLK---VHNR--KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV----CQETF   76 (124)
T ss_dssp             SSCCCTTTCCCCSSHHHHH---HHHH--HHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSS----SCCEE
T ss_pred             CCCCCCCCCCcCCCHHHHH---HHHH--hCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCC----CCCcc
Confidence            3478999999888653 22   2210  0001113579999887765433322111     2234577875    88777


Q ss_pred             Ccc-chhcccccc-CcccccCCCCCCCCcccc-ChhhHHHHhhhhCCC
Q 021991          126 PYY-GKLKHEQHC-RFRPYNCPYAGSECSVTG-DIPTLVAHLKDDHQV  170 (304)
Q Consensus       126 ~~~-~~~~He~~C-~~~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~~  170 (304)
                      ... .+..|+..- .-+|+.|+.    |+... ....|..|++..|..
T Consensus        77 ~~~~~l~~H~~~h~~~~~~~C~~----C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           77 RRRMELRLHMVSHTGEMPYKCSS----CSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             SSHHHHHHHHHHHSSSCSEECSS----SCCEESSHHHHHHHHHHTSSC
T ss_pred             CCHHHHHHHHHHcCCCCCccCCC----ccchhCCHHHHHHHHHHHCCC
Confidence            544 567787542 346889986    87766 447899999988874

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=80.43  E-value=2.7  Score=30.77  Aligned_cols=26  Identities=27%  Similarity=0.455  Sum_probs=18.4

Q ss_pred             ccccCCCCCCCCcccc-ChhhHHHHhhhhCC
Q 021991          140 RPYNCPYAGSECSVTG-DIPTLVAHLKDDHQ  169 (304)
Q Consensus       140 ~p~~CP~~g~~C~~~g-~~~~L~~Hl~~~H~  169 (304)
                      +++.|+.    |+... ....|..|++..+.
T Consensus        72 ~~~~C~~----C~~~f~~~~~L~~H~~~H~~   98 (106)
T 2ee8_A           72 KPFKCQE----CGKGFCQSRTLAVHKTLHMQ   98 (106)
T ss_dssp             CTTSCSS----SCCCCSSHHHHHHHHHHTTS
T ss_pred             CCeECCC----cCCcccCHHHHHHHHHHhCC
Confidence            5678886    76655 45789999876554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	304
d1k2fa_	190	b.8.1.2 (A:) SIAH, seven in absentia homolog {Mous	6e-61
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	9e-08
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	1e-05
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	7e-05
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	4e-04
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	0.002
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	0.003

>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]} Length = 190

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: SIAH, seven in absentia homolog
domain: SIAH, seven in absentia homolog
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  190 bits (483), Expect = 6e-61
 Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 5/190 (2%)

Query: 109 SLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDH 168
           S+  PCKY S GC    P+  K +HE+ C FRPY+CP  G+ C   G +  ++ HL   H
Sbjct: 1   SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 60

Query: 169 QVDMHDGCTFNHRYVKSDPNEVENATWMLTVFNCFGRQFCLHFEAFQLG-MALVYMAFLR 227
           +  +      +  ++ +D N      W++ + +CFG  F L  E  +       + A ++
Sbjct: 61  K-SITTLQGEDIVFLATDINLPGAVDWVM-MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQ 118

Query: 228 FMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGG 287
            +G   +A+ F+Y LE+  H RRL W+  PRSI +       + D L+   ++A  F+  
Sbjct: 119 LIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFA-- 176

Query: 288 DRTELKLRIT 297
           +   L + +T
Sbjct: 177 ENGNLGINVT 186

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (109), Expect = 9e-08
 Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 52 ELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFDL 95
          + L C  C      P    P  HTLCS C       CP C+   
Sbjct: 5  QFLRCQQCQAEAKCPK-LLPCLHTLCSGCLEASGMQCPICQAPW 47

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 40.3 bits (94), Expect = 1e-05
 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 3/48 (6%)

Query: 55 ECPVCTNLMYPPIHQCPNGHTLCSNCKN---RVHNCCPTCRFDLGNIR 99
           CP+C           P  H  C  C     R +  CP C+  + ++ 
Sbjct: 7  RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVV 54

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 7e-05
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 48 NGVHELLECPVCTNLMYPPIHQCPNGHTLCSNC------KNRVHNCCPTCR 92
          N + ++LECP+C  L+  P+      H  C  C      + +  + CP C+
Sbjct: 16 NAMQKILECPICLELIKEPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCK 65

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 4e-04
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 50 VHELLECPVCTNLMYPPIHQCPNGHTLCSNC-KNRVHNCCPTCR 92
          + +LL C  CTN++  P+      H  CSNC  + +   CP C 
Sbjct: 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCY 62

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 0.002
 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 5/48 (10%)

Query: 52 ELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV----HNCCPTCRFDL 95
              C +C           P GH +C++C           CP CR ++
Sbjct: 22 TFQLCKICAENDKDVK-IEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 68

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 33.3 bits (76), Expect = 0.003
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 49 GVHELLECPVCTNLMYPP--IHQCPN-GHTLCSNCKN---RVHNCCPTCRFDL 95
           + + +EC VC   +         P  GH   + C +     H+ CP CR  +
Sbjct: 1  AMDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	304
d1k2fa_	190	SIAH, seven in absentia homolog {Mouse (Mus muscul	100.0
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.05
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.02
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.97
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	98.94
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.92
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.84
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.68
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.45
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.44
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.42
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.35
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.32
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.16
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	97.6
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	97.43
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	97.33
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	95.9
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	87.69
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	86.13
d1wfpa_	74	Zinc finger A20 and AN1 domains containing protein	85.22
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	83.56
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	83.01
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	83.01
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	82.99
d1z60a1	59	TFIIH p44 subunit cysteine-rich domain {Human (Hom	81.65
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	81.1

>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: SIAH, seven in absentia homolog
domain: SIAH, seven in absentia homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-43  Score=308.14  Aligned_cols=189  Identities=29%  Similarity=0.589  Sum_probs=171.6

Q ss_pred             hccccCCCCCCCCccccCccchhccccccCcccccCCCCCCCCccccChhhHHHHhhhhCCCCcccceeEEEEEeccCCC
Q 021991          109 SLELPCKYQSLGCHDIFPYYGKLKHEQHCRFRPYNCPYAGSECSVTGDIPTLVAHLKDDHQVDMHDGCTFNHRYVKSDPN  188 (304)
Q Consensus       109 ~l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~p~~CP~~g~~C~~~g~~~~L~~Hl~~~H~~~~~~g~~~~~~f~~s~~~  188 (304)
                      ++.+||+|+.+||++.+++.++..||++|.|+|+.||.++.+|+|+|..++|..|++.+|+.... .+.++..|...+.+
T Consensus         1 Sv~~pC~~~~~GC~~~~~~~~~~~HE~~C~~~p~~C~~~~~~C~~~G~~~~l~~Hl~~~H~~~~~-~~~~~~~~~~~~~~   79 (190)
T d1k2fa_           1 SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITT-LQGEDIVFLATDIN   79 (190)
T ss_dssp             CCCCCCTTGGGTCCCCCCGGGHHHHHHTCTTSCEECCSSSTTCCCEECHHHHHHHHHHSSCCCEE-EESSEEEEEECCTT
T ss_pred             CeeEecCCCCCCCCEeccccchhhHHhcCCCcccCCCCCCCCCccCCCHhHHHHHHHhcCCcccc-cCccceEEeeeccc
Confidence            47899999999999999999999999999999999999888999999999999999999996532 23345567777777


Q ss_pred             cccccceEEEEEeecCceEEEEEeEEee-cceEEEEEEEEEeCCccccCCcEEEEEEeeCCceEEEEeeeeeeecccccc
Q 021991          189 EVENATWMLTVFNCFGRQFCLHFEAFQL-GMALVYMAFLRFMGDDDEAKKFSYSLEVGAHGRRLIWQGIPRSIRDSHRKV  267 (304)
Q Consensus       189 ~~~~~~~~l~v~~~~g~~F~l~~~~~~~-g~~~~~~a~v~~iG~~~~a~~F~Y~l~~~~~~r~L~~~s~~~si~~~~~~~  267 (304)
                      ......|+ +++.|+|++|+|+++++.+ +...+|+++|+++|++++|++|+|+|++.+++|+|+|++.|+|++++...+
T Consensus        80 ~~~~~~~v-~~~~~~g~~F~l~~~~~~~~~~~~~~~~~v~~~G~~~~a~~f~Yel~l~~~~r~l~~~~~~~si~e~~~~~  158 (190)
T d1k2fa_          80 LPGAVDWV-MMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATA  158 (190)
T ss_dssp             CTTCCEEE-EEEEETTEEEEEEEEEEEETTTEEEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETTTCSHHH
T ss_pred             cccceeEE-EEEecCCCEEEEEEEEEeccCCCCeEEEEEEEECCHHHhhCccEEEEecCCCceEEEeccccccccccccc
Confidence            66666776 4889999999999999887 455899999999999999999999999999999999999999999999999


Q ss_pred             ccCCCeEEEeCCcceeeecCCeeeEEEEEEEE
Q 021991          268 RDSQDGLIIQRNMALYFSGGDRTELKLRITGR  299 (304)
Q Consensus       268 ~~~~d~L~ip~~~~~~f~~~~~~~l~l~I~~~  299 (304)
                      ++++|||+||+++|++|+++|+|.|+|+||++
T Consensus       159 ~~~~d~lvi~~~~~~~F~~~g~L~l~v~I~~~  190 (190)
T d1k2fa_         159 IMNSDCLVFDTSIAQLFAENGNLGINVTISMC  190 (190)
T ss_dssp             HHTTCSEEEEHHHHHHHCBTTBEEEEEEEEEC
T ss_pred             cCCCCEEEECHHHHhhcccCCcEEEEEEEEeC
Confidence            99999999999999999999999999999985

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.1e-11  Score=94.61  Aligned_cols=67  Identities=24%  Similarity=0.444  Sum_probs=53.0

Q ss_pred             ccccCCCCeeeecccccccccccccccccCeecccCcccc-cCCCCCCccCCCC---ccchHHHHHhhhcc
Q 021991           45 YSNNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV-HNCCPTCRFDLGN---IRCLALEKVAESLE  111 (304)
Q Consensus        45 ~~~~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~-~~~CP~Cr~~~~~---~r~~~le~~l~~l~  111 (304)
                      ..++++.+.|.|+||.++|.+|+...+|||+||..|+.++ ...||.||.++..   .+|++++++++.++
T Consensus        14 ~~l~~l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~   84 (97)
T d1jm7b_          14 AALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLCS   84 (97)
T ss_dssp             HHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHHH
T ss_pred             HHHHhhhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhccccccCCcCchhhCcccHHHHHHHHHHH
Confidence            3446777889999999999999743345999999999887 4679999998753   47888888877553

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=4.4e-11  Score=88.04  Aligned_cols=63  Identities=22%  Similarity=0.265  Sum_probs=52.4

Q ss_pred             cCCCCeeeecccccccccccccccccCeecccCcccc----cCCCCCCccCCCC---ccchHHHHHhhhcc
Q 021991           48 NGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN---IRCLALEKVAESLE  111 (304)
Q Consensus        48 ~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~---~r~~~le~~l~~l~  111 (304)
                      .++++.|.||||.++|++|+. -++||+||..|+.++    ...||.|+.++..   .+|.+|+++++++.
T Consensus         2 ~eiP~~l~CpIc~~l~~dPv~-~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l   71 (80)
T d2c2la2           2 RDIPDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFI   71 (80)
T ss_dssp             CCCCSTTBCTTTCSBCSSEEE-CSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHH
T ss_pred             CCCCccccCcCcCchhhhhcc-cCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHH
Confidence            367899999999999999972 244999999999875    3579999999864   57899999998864

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.97  E-value=3.9e-11  Score=87.87  Aligned_cols=61  Identities=21%  Similarity=0.395  Sum_probs=50.4

Q ss_pred             CCCCeeeecccccccccccccccccCeecccCcccc----cCCCCCCccCCCC---ccchHHHHHhhhc
Q 021991           49 GVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN---IRCLALEKVAESL  110 (304)
Q Consensus        49 ~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~---~r~~~le~~l~~l  110 (304)
                      ++++.|.||||.++|.+||. .++||+||+.|+.++    ...||.|+.++..   .+|.+++++++++
T Consensus         4 eiP~~l~CpIc~~~m~dPV~-~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~   71 (78)
T d1t1ha_           4 EFPEYFRCPISLELMKDPVI-VSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALW   71 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEE-ETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHH
T ss_pred             CCCccCCCcCcCchhhCceE-ccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHH
Confidence            57899999999999999972 244999999999865    2569999999864   5788888888765

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=4.1e-11  Score=89.67  Aligned_cols=62  Identities=19%  Similarity=0.542  Sum_probs=47.2

Q ss_pred             ccccCCCCeeeeccccccccccc-ccccccCeecccCcccc----cCCCCCCccCCCC----ccchHHHHHhh
Q 021991           45 YSNNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN----IRCLALEKVAE  108 (304)
Q Consensus        45 ~~~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~----~r~~~le~~l~  108 (304)
                      .+.+++.+.+.||||.+++.+|+ ..|  ||+||..|+.++    ..+||.||.++..    .+.+++.+++.
T Consensus        15 d~~~d~~~~l~C~IC~~~~~~pv~~~C--gH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l~   85 (86)
T d1rmda2          15 DFPAHFVKSISCQICEHILADPVETSC--KHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILN   85 (86)
T ss_dssp             CCCHHHHHHTBCTTTCSBCSSEEECTT--SCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHH
T ss_pred             cchhhhccCcCCccCCcchhcceecCC--CChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHhc
Confidence            34456667789999999999997 455  999999999875    3579999998864    24455555554

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.8e-10  Score=78.23  Aligned_cols=45  Identities=31%  Similarity=0.617  Sum_probs=39.4

Q ss_pred             CCeeeeccccccccccc-ccccccCeecccCcccccCCCCCCccCCCC
Q 021991           51 HELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRVHNCCPTCRFDLGN   97 (304)
Q Consensus        51 ~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~~~~CP~Cr~~~~~   97 (304)
                      .+.|.|+||.+.+.+|+ +.|  ||.||..|+.+....||.||.++..
T Consensus         4 ~~~l~C~IC~~~~~~p~~lpC--gH~fC~~Ci~~~~~~CP~Cr~~~~~   49 (56)
T d1bora_           4 FQFLRCQQCQAEAKCPKLLPC--LHTLCSGCLEASGMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTT--SCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred             cCCCCCcccCcccCCCEEecC--CCHHhHHHHHcCCCcCcCCCCcccC
Confidence            45689999999999996 455  9999999999888899999998864

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=5.4e-11  Score=91.69  Aligned_cols=67  Identities=28%  Similarity=0.797  Sum_probs=49.2

Q ss_pred             ccCCCCeeeeccccccccccc-ccccccCeecccCcccc------cCCCCCCccCCCC---ccchHHHHHhhhc-cccCC
Q 021991           47 NNGVHELLECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV------HNCCPTCRFDLGN---IRCLALEKVAESL-ELPCK  115 (304)
Q Consensus        47 ~~~l~~~l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~------~~~CP~Cr~~~~~---~r~~~le~~l~~l-~v~C~  115 (304)
                      ++.+.+.|.||||.+++.+|+ ..|  ||+||..|+.++      ...||.||.++..   .+|..+.++++++ ++.|+
T Consensus        15 ~~~l~~~l~CpIC~~~~~~pv~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~~~~~   92 (103)
T d1jm7a_          15 INAMQKILECPICLELIKEPVSTKC--DHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKIICA   92 (103)
T ss_dssp             HHHHHHHTSCSSSCCCCSSCCBCTT--SCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHHHHH
T ss_pred             HHhcccCcCCCccCchhCCeEEcCC--CCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHHHHHcc
Confidence            455677789999999999997 455  999999999764      1479999998753   3555555555554 34444

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=4.5e-09  Score=80.10  Aligned_cols=64  Identities=16%  Similarity=0.084  Sum_probs=51.7

Q ss_pred             cCCCCeeeecccccccccccccccccCeecccCcccc---cCCCCCCccCCCC---ccchHHHHHhhhcc
Q 021991           48 NGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN---IRCLALEKVAESLE  111 (304)
Q Consensus        48 ~~l~~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~l~~l~  111 (304)
                      .++++.|.||||.++|.+||....+||.||+.|+.++   ...||.|+.++..   .+|.+|++.++.+.
T Consensus        17 ~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~   86 (98)
T d1wgma_          17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL   86 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHH
T ss_pred             cCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcCCcccccccccchhhcchHHHHHHHHHHH
Confidence            4677899999999999999743223569999999976   4789999999864   57899988887754

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=2.1e-08  Score=67.40  Aligned_cols=43  Identities=30%  Similarity=0.791  Sum_probs=34.2

Q ss_pred             eeecccccccccc--c-ccccccCeecccCcccc----cCCCCCCccCCC
Q 021991           54 LECPVCTNLMYPP--I-HQCPNGHTLCSNCKNRV----HNCCPTCRFDLG   96 (304)
Q Consensus        54 l~CpIC~~~l~~P--i-~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~   96 (304)
                      ++||||++.+.+.  + ..+++||.||..|+.++    ..+||.||.++.
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~   50 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP   50 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCS
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCC
Confidence            5899999988643  2 34566999999999876    246999999875

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.5e-08  Score=72.83  Aligned_cols=42  Identities=26%  Similarity=0.723  Sum_probs=35.7

Q ss_pred             eeeccccccccccc-ccccccCeecccCcccc----cCCCCCCccCCCC
Q 021991           54 LECPVCTNLMYPPI-HQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN   97 (304)
Q Consensus        54 l~CpIC~~~l~~Pi-~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~   97 (304)
                      ..|+||.+.+.+|+ ..|  ||.||..|+.++    .+.||.||..+..
T Consensus        24 ~~C~IC~~~~~~~~~~~C--gH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~   70 (79)
T d1fbva4          24 QLCKICAENDKDVKIEPC--GHLMCTSCLTSWQESEGQGCPFCRCEIKG   70 (79)
T ss_dssp             TBCTTTSSSBCCEECSSS--CCEECHHHHHHHHHTTCCSCTTTCCCCCC
T ss_pred             CCCccCCCcCCCeEEeCC--CCeeeHHHHHHHHHHCcCcCCCCCcCccC
Confidence            46999999999997 456  999999999865    2579999999865

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.42  E-value=1.6e-08  Score=69.04  Aligned_cols=42  Identities=10%  Similarity=0.133  Sum_probs=36.3

Q ss_pred             eeecccccccccccc--cccccCeecccCcccc---cCCCCCCccCCCC
Q 021991           54 LECPVCTNLMYPPIH--QCPNGHTLCSNCKNRV---HNCCPTCRFDLGN   97 (304)
Q Consensus        54 l~CpIC~~~l~~Pi~--qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~   97 (304)
                      |.|+||++++++|+.  .|  ||+||..|+.++   ...||.||.++..
T Consensus         1 l~C~Ic~~~~~~Pv~~~~c--Gh~fc~~cI~~~l~~~~~CP~c~~~l~~   47 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKS--RTIFEKSLLEQYVKDTGNDPITNEPLSI   47 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTT--TEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             CCCccCCchHHhcCccCCC--CCcccHHHHHHHHhhccCCCccCCcCCH
Confidence            579999999999973  46  999999999976   4789999998763

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.35  E-value=6.1e-08  Score=68.60  Aligned_cols=41  Identities=27%  Similarity=0.697  Sum_probs=34.9

Q ss_pred             eeccccccccccc--ccccccCeecccCcccc---cCCCCCCccCCCC
Q 021991           55 ECPVCTNLMYPPI--HQCPNGHTLCSNCKNRV---HNCCPTCRFDLGN   97 (304)
Q Consensus        55 ~CpIC~~~l~~Pi--~qC~~GH~fC~~C~~~~---~~~CP~Cr~~~~~   97 (304)
                      .|+||++.+.+|+  ..|  ||.||..|+.++   ..+||.||.++..
T Consensus         7 ~C~IC~~~~~~~~~~~~C--~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~   52 (68)
T d1chca_           7 RCPICLEDPSNYSMALPC--LHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCSSCCSCCCSCEEETTT--TEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCccCCcCccCCcEEeCC--CCcCcHHHHHHHHHhCCcCCCCCcchHh
Confidence            5999999998775  356  999999999876   5899999998754

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.32  E-value=1.1e-07  Score=64.61  Aligned_cols=46  Identities=26%  Similarity=0.616  Sum_probs=35.9

Q ss_pred             CCCeeeecccccccccc--cccc-cccCeecccCcccc---cCCCCCCccCC
Q 021991           50 VHELLECPVCTNLMYPP--IHQC-PNGHTLCSNCKNRV---HNCCPTCRFDL   95 (304)
Q Consensus        50 l~~~l~CpIC~~~l~~P--i~qC-~~GH~fC~~C~~~~---~~~CP~Cr~~~   95 (304)
                      +++..+|+||++.+.+.  +.+. .+||.||..|+.++   .+.||.||.++
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i   53 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEe
Confidence            45567899999999754  3333 25999999999987   47899999875

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.1e-07  Score=66.69  Aligned_cols=46  Identities=33%  Similarity=0.749  Sum_probs=33.8

Q ss_pred             Ceeeecccccccc-cc---cccccccCeecccCcccc----cCCCCCCccCCCC
Q 021991           52 ELLECPVCTNLMY-PP---IHQCPNGHTLCSNCKNRV----HNCCPTCRFDLGN   97 (304)
Q Consensus        52 ~~l~CpIC~~~l~-~P---i~qC~~GH~fC~~C~~~~----~~~CP~Cr~~~~~   97 (304)
                      +...||||++.+. +|   ++..+|||.||..|+.++    ...||.||.++..
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccc
Confidence            4568999998653 32   222344999999999876    3579999998753

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.60  E-value=5.8e-06  Score=63.61  Aligned_cols=44  Identities=18%  Similarity=0.408  Sum_probs=32.6

Q ss_pred             eeeccccccccccc-----------------ccccccCeecccCccccc--------CCCCCCccCCCC
Q 021991           54 LECPVCTNLMYPPI-----------------HQCPNGHTLCSNCKNRVH--------NCCPTCRFDLGN   97 (304)
Q Consensus        54 l~CpIC~~~l~~Pi-----------------~qC~~GH~fC~~C~~~~~--------~~CP~Cr~~~~~   97 (304)
                      -.|+||++.|..+.                 ...+|||.||..|+.++.        .+||.||..++.
T Consensus        26 ~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             ccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            36999999886531                 123349999999998762        369999988753

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=1.4e-05  Score=58.83  Aligned_cols=42  Identities=21%  Similarity=0.535  Sum_probs=31.8

Q ss_pred             eecccccccccccccc-----------------cccCeecccCcccc---cCCCCCCccCCC
Q 021991           55 ECPVCTNLMYPPIHQC-----------------PNGHTLCSNCKNRV---HNCCPTCRFDLG   96 (304)
Q Consensus        55 ~CpIC~~~l~~Pi~qC-----------------~~GH~fC~~C~~~~---~~~CP~Cr~~~~   96 (304)
                      .|+||++.+.++-..|                 +|||.|+..|+.++   .+.||.||.++.
T Consensus        23 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          23 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             cCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            4889988776542111                 35999999999976   478999999875

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=97.33  E-value=3e-05  Score=52.78  Aligned_cols=47  Identities=13%  Similarity=0.355  Sum_probs=36.5

Q ss_pred             CCCeeeeccccccccccc-cccc---ccCeecccCcccc-----cCCCCCCccCCC
Q 021991           50 VHELLECPVCTNLMYPPI-HQCP---NGHTLCSNCKNRV-----HNCCPTCRFDLG   96 (304)
Q Consensus        50 l~~~l~CpIC~~~l~~Pi-~qC~---~GH~fC~~C~~~~-----~~~CP~Cr~~~~   96 (304)
                      ..+...|+||++.+.++. ..|.   ++|.|+..|+.++     ..+||.||.++.
T Consensus         3 ded~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            356678999999888774 4453   3699999999976     257999999864

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.00098  Score=48.74  Aligned_cols=30  Identities=20%  Similarity=0.479  Sum_probs=22.4

Q ss_pred             eeeeccccccccc---cc-ccccccCeecccCcccc
Q 021991           53 LLECPVCTNLMYP---PI-HQCPNGHTLCSNCKNRV   84 (304)
Q Consensus        53 ~l~CpIC~~~l~~---Pi-~qC~~GH~fC~~C~~~~   84 (304)
                      ...|+||++.+..   +. ..|  ||.||..|+...
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C--~H~fC~~Cl~~~   38 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQC--QCIFCTLCLKQY   38 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTT--TEEEEHHHHHHH
T ss_pred             CCcCccCCCcccCCceEEECCC--CCEeCCcCHHHH
Confidence            3479999998753   22 246  999999999753

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.69  E-value=0.21  Score=28.94  Aligned_cols=25  Identities=36%  Similarity=0.665  Sum_probs=20.0

Q ss_pred             ccccCCCCCCCCccccCh-hhHHHHhhh
Q 021991          140 RPYNCPYAGSECSVTGDI-PTLVAHLKD  166 (304)
Q Consensus       140 ~p~~CP~~g~~C~~~g~~-~~L~~Hl~~  166 (304)
                      +|+.|+.+|  |++...+ ..|..|.+.
T Consensus         2 rP~~C~~pg--C~k~F~r~~~L~~H~r~   27 (32)
T d1zfda_           2 RPYSCDHPG--CDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             CSBCCCCTT--CCCCBSSSHHHHHHHGG
T ss_pred             cCeECcCCC--CCCeeCCHHHHHHHhhh
Confidence            689999975  9998855 789999664

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.13  E-value=0.16  Score=28.57  Aligned_cols=25  Identities=36%  Similarity=0.833  Sum_probs=18.4

Q ss_pred             ccccCCCCCCCCccccCh-hhHHHHhhh
Q 021991          140 RPYNCPYAGSECSVTGDI-PTLVAHLKD  166 (304)
Q Consensus       140 ~p~~CP~~g~~C~~~g~~-~~L~~Hl~~  166 (304)
                      +|+.|+.+|  |++...+ .+|..|.+.
T Consensus         1 rPf~C~~~g--C~K~F~~~~~L~~H~r~   26 (28)
T d1ubdc4           1 RPYVCPFDG--CNKKFAQSTNLKSHILT   26 (28)
T ss_dssp             CCCCCCSTT--CCCCCSSTTTTHHHHHH
T ss_pred             CCcCCCCCC--cCCcCCCHHHHHHHHhh
Confidence            578898865  8887754 678888753

>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At1g12440
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.22  E-value=0.79  Score=31.54  Aligned_cols=43  Identities=16%  Similarity=0.283  Sum_probs=32.6

Q ss_pred             CeeeecccccccccccccccccCeecccCcccccCCCCCCccC
Q 021991           52 ELLECPVCTNLMYPPIHQCPNGHTLCSNCKNRVHNCCPTCRFD   94 (304)
Q Consensus        52 ~~l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~~~~CP~Cr~~   94 (304)
                      ..-.|..|..-+.-..++|.||+.||..........|+..-..
T Consensus        24 kk~RC~~C~KKl~l~~~~CrCg~~FC~~HR~pe~H~C~fDyK~   66 (74)
T d1wfpa_          24 TATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKG   66 (74)
T ss_dssp             CCCBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCSCTTS
T ss_pred             CCCcChhcCCccCCCceecCCCChhhhccCCccCcCCCCcchh
Confidence            3457999998777555899999999999987655567665443

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.56  E-value=0.62  Score=32.94  Aligned_cols=58  Identities=19%  Similarity=0.456  Sum_probs=38.2

Q ss_pred             CCCCcccccccCCCCeeeecccccccc-----ccccccc-ccCeecccCccc----ccCCCCCCccCCC
Q 021991           38 LGGKQGIYSNNGVHELLECPVCTNLMY-----PPIHQCP-NGHTLCSNCKNR----VHNCCPTCRFDLG   96 (304)
Q Consensus        38 ~~~~~~~~~~~~l~~~l~CpIC~~~l~-----~Pi~qC~-~GH~fC~~C~~~----~~~~CP~Cr~~~~   96 (304)
                      ++|..+...+..+... .|.||.+-+-     .|.+-|. |+--+|+.|.+-    -...||.|+.++.
T Consensus         2 ~~g~~g~kp~~~~~~q-~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Yk   69 (93)
T d1weoa_           2 SSGSSGPKPLKNLDGQ-FCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK   69 (93)
T ss_dssp             CCSSSSSSCCSCCSSC-BCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred             CCCCCCCCChhhcccc-hhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhh
Confidence            4555555555555554 4999998754     2323442 377899999862    2478999988764

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=83.01  E-value=0.14  Score=35.02  Aligned_cols=38  Identities=34%  Similarity=0.907  Sum_probs=29.2

Q ss_pred             eeecccccccccccccccccCeecccCcccc--cCCCCCCccCCC
Q 021991           54 LECPVCTNLMYPPIHQCPNGHTLCSNCKNRV--HNCCPTCRFDLG   96 (304)
Q Consensus        54 l~CpIC~~~l~~Pi~qC~~GH~fC~~C~~~~--~~~CP~Cr~~~~   96 (304)
                      +.||.|...|..-     .||..|..|-...  ...||.|..++.
T Consensus         3 ~~CP~C~~eL~~~-----~~~~~C~~C~~~~~~~a~CPdC~~~Le   42 (71)
T d2jnea1           3 LHCPQCQHVLDQD-----NGHARCRSCGEFIEMKALCPDCHQPLQ   42 (71)
T ss_dssp             CBCSSSCSBEEEE-----TTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred             CcCCCccCccccc-----CCCEehhhhhhhheeEEeCCccccHHH
Confidence            5799999987652     2788889997754  367999988764

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.01  E-value=0.39  Score=27.46  Aligned_cols=25  Identities=24%  Similarity=0.509  Sum_probs=19.5

Q ss_pred             ccccCCCCCCCCccccCh-hhHHHHhhh
Q 021991          140 RPYNCPYAGSECSVTGDI-PTLVAHLKD  166 (304)
Q Consensus       140 ~p~~CP~~g~~C~~~g~~-~~L~~Hl~~  166 (304)
                      +|+.||+++  |+....+ ..|..|++.
T Consensus         1 kpf~C~~~~--C~k~F~~~~~L~~H~r~   26 (31)
T d1sp2a_           1 RPFMCTWSY--CGKRFTRSDELQRHKRT   26 (31)
T ss_dssp             CCCBCCSTT--CCCBCSSHHHHHHHHTT
T ss_pred             CcCCCcCCC--CCcCcCChhHhhhhcCc
Confidence            588999864  9988754 788888864

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.99  E-value=0.32  Score=27.45  Aligned_cols=24  Identities=33%  Similarity=0.779  Sum_probs=18.7

Q ss_pred             ccccCCCCCCCCccccCh-hhHHHHhh
Q 021991          140 RPYNCPYAGSECSVTGDI-PTLVAHLK  165 (304)
Q Consensus       140 ~p~~CP~~g~~C~~~g~~-~~L~~Hl~  165 (304)
                      +|+.|+.+|  |++...+ ..|..|.+
T Consensus         1 Kp~~C~~~g--C~k~F~~~~~L~~H~r   25 (29)
T d1a1ia1           1 RPYACPVES--CDRRFSRSADLTRHIR   25 (29)
T ss_dssp             CCEECCSTT--CCCEESSHHHHHHHTH
T ss_pred             CCeECCCCC--CCcEECchhHhhhhcC
Confidence            588999865  9998754 78888865

>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: TFIIH p44 subunit cysteine-rich domain
domain: TFIIH p44 subunit cysteine-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.65  E-value=0.33  Score=32.00  Aligned_cols=39  Identities=21%  Similarity=0.571  Sum_probs=29.4

Q ss_pred             eeeecccccccccc-ccccc-ccCeecccCcc---cccCCCCCC
Q 021991           53 LLECPVCTNLMYPP-IHQCP-NGHTLCSNCKN---RVHNCCPTC   91 (304)
Q Consensus        53 ~l~CpIC~~~l~~P-i~qC~-~GH~fC~~C~~---~~~~~CP~C   91 (304)
                      .-.|--|...+.+. +++|+ +++.||..|-.   +....||.|
T Consensus        15 ~~~C~gC~~~l~~~~~y~C~~C~~~FC~dCD~fiHe~lh~CpgC   58 (59)
T d1z60a1          15 ERFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC   58 (59)
T ss_dssp             CCEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred             CCCccCCCCcCCCCceEECcCCCCccccccchhhhhhhcCCCCC
Confidence            34699999988866 48886 47899999953   334789987

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.10  E-value=0.5  Score=26.80  Aligned_cols=24  Identities=29%  Similarity=0.736  Sum_probs=18.7

Q ss_pred             ccccCCCCCCCCccccCh-hhHHHHhh
Q 021991          140 RPYNCPYAGSECSVTGDI-PTLVAHLK  165 (304)
Q Consensus       140 ~p~~CP~~g~~C~~~g~~-~~L~~Hl~  165 (304)
                      +|+.|+.+|  |++...+ ..|..|++
T Consensus         1 kp~~C~~~g--Cgk~F~~~~~L~~H~r   25 (30)
T d2glia3           1 KPHKCTFEG--CRKSYSRLENLKTHLR   25 (30)
T ss_dssp             CCCCCCSTT--CCCCCSSHHHHHHHHH
T ss_pred             CCeeCCCCC--CCceECChhHhhhhcC
Confidence            588999864  9988755 68888875