BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021992
(304 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn
Inhibitor A02
pdb|3IU8|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T03
pdb|3IU9|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T07
Length = 288
Score = 239 bits (609), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/219 (55%), Positives = 146/219 (66%), Gaps = 3/219 (1%)
Query: 72 RKRLRPGKVSPHRPVPDHIPRPPYVNSQKPIGIV-SGPEVHDEKGIECMRVSGRLAAQVL 130
R L PG +SP RPVP+ I RP YV KP S P V + IE MRV+GR+AA L
Sbjct: 7 RTALSPGVLSPTRPVPNWIARPEYVG--KPAAQEGSEPWVQTPEVIEKMRVAGRIAAGAL 64
Query: 131 EYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRA 190
AG V PG+TTDE+D+ H+ ++DNGAYPS LGY GFPKS CTS+NE ICHGIPDS
Sbjct: 65 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTV 124
Query: 191 LEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYK 250
+ DGD +NIDVT Y+ G HGDT+ATF GDV DE R LV T++ +AI+ PG
Sbjct: 125 ITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALS 184
Query: 251 KIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY 289
IG+ I+ +A+R+ Y VVR F GHGIG FH VVLHY
Sbjct: 185 VIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHY 223
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine
Aminopeptidase Suggests A Mode Of Interaction With The
Ribosome
pdb|1YJ3|A Chain A, Crystal Structure Analysis Of Product Bound Methionine
Aminopeptidase Type 1c From Mycobacterium Tuberculosis
Length = 291
Score = 238 bits (608), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/219 (55%), Positives = 146/219 (66%), Gaps = 3/219 (1%)
Query: 72 RKRLRPGKVSPHRPVPDHIPRPPYVNSQKPIGIV-SGPEVHDEKGIECMRVSGRLAAQVL 130
R L PG +SP RPVP+ I RP YV KP S P V + IE MRV+GR+AA L
Sbjct: 10 RTALSPGVLSPTRPVPNWIARPEYVG--KPAAQEGSEPWVQTPEVIEKMRVAGRIAAGAL 67
Query: 131 EYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRA 190
AG V PG+TTDE+D+ H+ ++DNGAYPS LGY GFPKS CTS+NE ICHGIPDS
Sbjct: 68 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTV 127
Query: 191 LEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYK 250
+ DGD +NIDVT Y+ G HGDT+ATF GDV DE R LV T++ +AI+ PG
Sbjct: 128 ITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALS 187
Query: 251 KIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY 289
IG+ I+ +A+R+ Y VVR F GHGIG FH VVLHY
Sbjct: 188 VIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHY 226
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn
Form
pdb|3PKB|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y16, In Mn
Form
pdb|3PKC|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y08, In Mn
Form
pdb|3PKD|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Mn
Form
pdb|3PKE|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Ni
Form
Length = 285
Score = 238 bits (608), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/219 (55%), Positives = 146/219 (66%), Gaps = 3/219 (1%)
Query: 72 RKRLRPGKVSPHRPVPDHIPRPPYVNSQKPIGIV-SGPEVHDEKGIECMRVSGRLAAQVL 130
R L PG +SP RPVP+ I RP YV KP S P V + IE MRV+GR+AA L
Sbjct: 4 RTALSPGVLSPTRPVPNWIARPEYVG--KPAAQEGSEPWVQTPEVIEKMRVAGRIAAGAL 61
Query: 131 EYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRA 190
AG V PG+TTDE+D+ H+ ++DNGAYPS LGY GFPKS CTS+NE ICHGIPDS
Sbjct: 62 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTV 121
Query: 191 LEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYK 250
+ DGD +NIDVT Y+ G HGDT+ATF GDV DE R LV T++ +AI+ PG
Sbjct: 122 ITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALS 181
Query: 251 KIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY 289
IG+ I+ +A+R+ Y VVR F GHGIG FH VVLHY
Sbjct: 182 VIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHY 220
>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium
Tuberculosis Methionine Aminopeptidase
Length = 291
Score = 235 bits (599), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/219 (54%), Positives = 145/219 (66%), Gaps = 3/219 (1%)
Query: 72 RKRLRPGKVSPHRPVPDHIPRPPYVNSQKPIGIV-SGPEVHDEKGIECMRVSGRLAAQVL 130
R L PG +SP RPVP+ I RP YV KP S P V + IE MRV+GR+AA L
Sbjct: 10 RTALSPGVLSPTRPVPNWIARPEYVG--KPAAQEGSEPWVQTPEVIEKMRVAGRIAAGAL 67
Query: 131 EYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRA 190
AG V PG+TTDE+D+ H+ ++DNGAYPS LGY GFPKS TS+NE ICHGIPDS
Sbjct: 68 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCSTSLNEVICHGIPDSTV 127
Query: 191 LEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYK 250
+ DGD +NIDVT Y+ G HGDT+ATF GDV DE R LV T++ +AI+ PG
Sbjct: 128 ITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALS 187
Query: 251 KIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY 289
IG+ I+ +A+R+ Y VVR F GHGIG FH VVLHY
Sbjct: 188 VIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHY 226
>pdb|2B3H|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I With A Third Cobalt In The Active Site
pdb|2B3K|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I In The Holo Form
pdb|2B3L|A Chain A, Crystal Structure Of Type I Human Methionine
Aminopeptidase In The Apo Form
pdb|2GZ5|A Chain A, Human Type 1 Methionine Aminopeptidase In Complex With
Ovalicin At 1.1 Ang
pdb|2NQ6|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
1 In Complex With
3-Tert-Butoxycarbonylaminopyridine-2-Carboxylic Acid
Thiazole-2- Ylamide
pdb|2NQ7|A Chain A, Crystal Structure Of Type 1 Human Methionine
Aminopeptidase In Complex With
3-(2,2-Dimethylpropionylamino)pyridine-2-Carboxylic Acid
Thiazole-2-Ylamide
Length = 329
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 112/233 (48%), Positives = 150/233 (64%), Gaps = 8/233 (3%)
Query: 67 EPNRRRKRLRPG-KVSPHRPVPDHIPRPPYVN-------SQKPIGIVSGPEVHDEKGIEC 118
+P R +LRP + P RPVP +I RP Y + S++ + S ++ + IE
Sbjct: 24 DPYRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEG 83
Query: 119 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 178
MR+ RLA +VL+ A ++KPG+TT+EID AVH I YPSPL Y FPKS CTSVN
Sbjct: 84 MRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVN 143
Query: 179 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHK 238
E ICHGIPD R L++GD +N+D+T+Y NGYHGD + TFF G+VDD AR LV+ T +CL +
Sbjct: 144 EVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQ 203
Query: 239 AISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYSN 291
AI PG+ Y+++G IQ HA + VVR + GHGI ++FH P V HY+
Sbjct: 204 AIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAK 256
>pdb|4FLI|A Chain A, Human Metap1 With Bengamide Analog Y16, In Mn Form
pdb|4FLJ|A Chain A, Human Metap1 With Bengamide Analog Y08, In Mn Form
pdb|4FLK|A Chain A, Human Metap1 With Bengamide Analog Y10, In Mn Form
pdb|4FLL|A Chain A, Human Metap1 With Bengamide Analog Yz6, In Mn Form
Length = 326
Score = 222 bits (565), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/230 (48%), Positives = 148/230 (64%), Gaps = 8/230 (3%)
Query: 70 RRRKRLRPG-KVSPHRPVPDHIPRPPYVN-------SQKPIGIVSGPEVHDEKGIECMRV 121
R +LRP + P RPVP +I RP Y + S++ + S ++ + IE MR+
Sbjct: 3 RYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRL 62
Query: 122 SGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECI 181
RLA +VL+ A ++KPG+TT+EID AVH I YPSPL Y FPKS CTSVNE I
Sbjct: 63 VCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVI 122
Query: 182 CHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAIS 241
CHGIPD R L++GD +N+D+T+Y NGYHGD + TFF G+VDD AR LV+ T +CL +AI
Sbjct: 123 CHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAID 182
Query: 242 VCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYSN 291
PG+ Y+++G IQ HA + VVR + GHGI ++FH P V HY+
Sbjct: 183 AVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAK 232
>pdb|2G6P|A Chain A, Crystal Structure Of Truncated (Delta 1-89) Human
Methionine Aminopeptidase Type 1 In Complex With Pyridyl
Pyrimidine Derivative
Length = 304
Score = 221 bits (562), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 111/230 (48%), Positives = 148/230 (64%), Gaps = 8/230 (3%)
Query: 70 RRRKRLRPG-KVSPHRPVPDHIPRPPYVN-------SQKPIGIVSGPEVHDEKGIECMRV 121
R +LRP + P RPVP +I RP Y + S++ + S ++ + IE MR+
Sbjct: 2 RYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRL 61
Query: 122 SGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECI 181
RLA +VL+ A ++KPG+TT+EID AVH I YPSPL Y FPKS CTSVNE I
Sbjct: 62 VCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVI 121
Query: 182 CHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAIS 241
CHGIPD R L++GD +N+D+T+Y NGYHGD + TFF G+VDD AR LV+ T +CL +AI
Sbjct: 122 CHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAID 181
Query: 242 VCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYSN 291
PG+ Y+++G IQ HA + VVR + GHGI ++FH P V HY+
Sbjct: 182 AVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAK 231
>pdb|4FUK|A Chain A, Aminopeptidase From Trypanosoma Brucei
pdb|4FUK|B Chain B, Aminopeptidase From Trypanosoma Brucei
Length = 337
Score = 214 bits (544), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 113/240 (47%), Positives = 144/240 (60%), Gaps = 22/240 (9%)
Query: 75 LRPGKVSPHRPVPDHIPRPPYVNSQKPIGIVSGPE---------------VHDE--KGIE 117
LRPGK++P R VP HI RP Y + G VS E +HD+ K E
Sbjct: 12 LRPGKITPRRAVPSHILRPDYADRA---GGVSASEEKDRGSKVKVYNIQFLHDDSKKTAE 68
Query: 118 CMRVSG--RLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
R+ +L+ +VL+ A KPGITTDE+D+ VH+ ++ YPSPL Y GFPKSVCT
Sbjct: 69 IQRIKTVCQLSREVLDIATAAAKPGITTDELDRIVHEATVERNMYPSPLNYYGFPKSVCT 128
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDC 235
SVNE ICHGIPDSR LE+GD +NIDV+ YLNG+HGD + T F G DD++ LV +C
Sbjct: 129 SVNEVICHGIPDSRELEEGDILNIDVSSYLNGFHGDLNETVFIGRPDDDSVRLVHAAYEC 188
Query: 236 LHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYSNYPEL 295
L I V P YK++G I+ A +Y VVR + GHG+G +FH P V HY+N L
Sbjct: 189 LCAGIGVVKPEALYKQVGDAIEACASQYQCSVVRTYTGHGVGHLFHTSPTVCHYANNKSL 248
>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From
Plasmodium Falciparum, Pf10_0150
Length = 368
Score = 204 bits (519), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 104/223 (46%), Positives = 140/223 (62%), Gaps = 8/223 (3%)
Query: 75 LRPGKVSPHRPVPDHIPRPPYVNSQKPIGIV-----SGPEVHDEKGIECMRVSGRLAAQV 129
+RP +S VP HI RP Y S P + S V++E+ I+ +R + L +
Sbjct: 63 VRPWPLSKINHVPSHIERPDYAISSIPESELIYKRKSDIYVNNEEEIQRIREACILGRKT 122
Query: 130 LEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSR 189
L+YA TLV PG+TTDEID+ VH+ II N AYPS L Y FPKS CTSVNE +CHGIPD R
Sbjct: 123 LDYAHTLVSPGVTTDEIDRKVHEFIIKNNAYPSTLNYYKFPKSCCTSVNEIVCHGIPDYR 182
Query: 190 ALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDD---EARNLVKVTKDCLHKAISVCAPG 246
L+ GD INID++V+ G H D + T+F GD++D E + LV+ L +AI C PG
Sbjct: 183 PLKSGDIINIDISVFYKGVHSDLNETYFVGDINDVPKEGKELVETCYFSLMEAIKKCKPG 242
Query: 247 MEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY 289
M YK IG I + + N+ VVR + GHG+G++FH++P V H+
Sbjct: 243 MFYKNIGTLIDAYVSKKNFSVVRSYSGHGVGKLFHSNPTVPHF 285
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 190 bits (483), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 124/181 (68%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG 168
++H EK MR +G+LAA+ L++ VKP +TT+ ++ H I + A P+PL Y G
Sbjct: 7 KIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKG 66
Query: 169 FPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNL 228
FPKS+CTS+N +CHGIP+ + L++GD +NIDVTV L+G++GDTS ++ GDV + + L
Sbjct: 67 FPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRL 126
Query: 229 VKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLH 288
++VT D + K I V PG + IG IQ +A+++NY VVR + GHGIGRVFH P +L+
Sbjct: 127 IQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSILN 186
Query: 289 Y 289
Y
Sbjct: 187 Y 187
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 124/181 (68%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG 168
++H EK MR +G+LAA+ L++ VKP +TT+ ++ H I + A P+PL Y G
Sbjct: 7 KIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKG 66
Query: 169 FPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNL 228
FPKS+CTS+N +CHGIP+ + L++GD +NIDVTV L+G++GDTS ++ GDV + + L
Sbjct: 67 FPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRL 126
Query: 229 VKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLH 288
++VT D + K I V PG + IG IQ +A+++NY VVR + GHGIGRVFH P +L+
Sbjct: 127 IQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSILN 186
Query: 289 Y 289
Y
Sbjct: 187 Y 187
>pdb|1XNZ|A Chain A, Crystal Structure Of Mn(Ii) Form Of E. Coli. Methionine
Aminopeptidase In Complex With
5-(2-Chlorophenyl)furan-2- Carboxylic Acid
pdb|2BB7|A Chain A, Mn Form Of E. Coli Methionine Aminopeptidase In Complex
With A Quinolinyl Sulfonamide Inhibitor
pdb|2EVC|A Chain A, Crystal Structure Of E. Coli. Methionine Amino Peptidase
In Complex With 5-(2-(trifluoromethyl)phenyl)furan-2-
Carboxylic Acid
pdb|2EVM|A Chain A, Crystal Structure Of Methionine Aminopeptidase In Complex
With 5-(2,5-Dichlorophenyl)furan-2-Carboxylic Acid
pdb|2EVO|A Chain A, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|2EVO|B Chain B, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|1MAT|A Chain A, Structure Of The Cobalt-Dependent Methionine
Aminopeptidase From Escherichia Coli: A New Type Of
Proteolytic Enzyme
Length = 264
Score = 170 bits (431), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 119/178 (66%), Gaps = 2/178 (1%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 11 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 70
Query: 175 TSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 233
S+NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T+
Sbjct: 71 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQ 130
Query: 234 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYSN 291
+ L+ A+ + PG+ ++IG IQ + + VVR++ GHGIGR FH +P VLHY +
Sbjct: 131 ESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDS 188
>pdb|4A6V|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
pdb|4A6V|B Chain B, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 265
Score = 170 bits (431), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 119/178 (66%), Gaps = 2/178 (1%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 11 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 70
Query: 175 TSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 233
S+NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T+
Sbjct: 71 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQ 130
Query: 234 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYSN 291
+ L+ A+ + PG+ ++IG IQ + + VVR++ GHGIGR FH +P VLHY +
Sbjct: 131 ESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDS 188
>pdb|2GU4|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU4|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU5|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU5|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU6|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU6|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU7|A Chain A, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
pdb|2GU7|B Chain B, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
Length = 263
Score = 170 bits (431), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 119/178 (66%), Gaps = 2/178 (1%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 10 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 69
Query: 175 TSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 233
S+NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T+
Sbjct: 70 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQ 129
Query: 234 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYSN 291
+ L+ A+ + PG+ ++IG IQ + + VVR++ GHGIGR FH +P VLHY +
Sbjct: 130 ESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDS 187
>pdb|2GG0|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG2|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG3|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG5|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG7|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG8|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG9|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGB|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGC|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2Q93|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B21
pdb|2Q95|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A05
pdb|2Q96|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A18
Length = 263
Score = 170 bits (430), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 119/178 (66%), Gaps = 2/178 (1%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNG-AYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I++ A + LGY G+PKSVC
Sbjct: 10 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 69
Query: 175 TSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 233
S+NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T+
Sbjct: 70 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQ 129
Query: 234 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYSN 291
+ L+ A+ + PG+ ++IG IQ + + VVR++ GHGIGR FH +P VLHY +
Sbjct: 130 ESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDS 187
>pdb|2P99|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye6
Length = 261
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 119/178 (66%), Gaps = 2/178 (1%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNG-AYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I++ A + LGY G+PKSVC
Sbjct: 10 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 69
Query: 175 TSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 233
S+NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T+
Sbjct: 70 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQ 129
Query: 234 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYSN 291
+ L+ A+ + PG+ ++IG IQ + + VVR++ GHGIGR FH +P VLHY +
Sbjct: 130 ESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDS 187
>pdb|2P98|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye7
pdb|2P9A|A Chain A, E. Coli Methionine Aminopeptidase Dimetalated With
Inhibitor Ye6
pdb|2Q92|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B23
pdb|2Q94|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A04
Length = 262
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 119/178 (66%), Gaps = 2/178 (1%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNG-AYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I++ A + LGY G+PKSVC
Sbjct: 10 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 69
Query: 175 TSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 233
S+NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T+
Sbjct: 70 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQ 129
Query: 234 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYSN 291
+ L+ A+ + PG+ ++IG IQ + + VVR++ GHGIGR FH +P VLHY +
Sbjct: 130 ESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDS 187
>pdb|2GTX|A Chain A, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|2GTX|B Chain B, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|3D27|A Chain A, E. Coli Methionine Aminopeptidase With Fe Inhibitor W29
Length = 261
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 119/178 (66%), Gaps = 2/178 (1%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 8 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 67
Query: 175 TSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 233
S+NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T+
Sbjct: 68 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQ 127
Query: 234 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYSN 291
+ L+ A+ + PG+ ++IG IQ + + VVR++ GHGIGR FH +P VLHY +
Sbjct: 128 ESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDS 185
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant
Length = 278
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 119/178 (66%), Gaps = 2/178 (1%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNG-AYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I++ A + LGY G+PKSVC
Sbjct: 11 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 70
Query: 175 TSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 233
S+NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T+
Sbjct: 71 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQ 130
Query: 234 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYSN 291
+ L+ A+ + PG+ ++IG IQ + + VVR++ GHGIG+ FH +P VLHY +
Sbjct: 131 ESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHYDS 188
>pdb|3MAT|A Chain A, E.coli Methionine Aminopeptidase Transition-state
Inhibitor Complex
Length = 265
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 119/178 (66%), Gaps = 2/178 (1%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 11 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 70
Query: 175 TSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 233
S+NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T+
Sbjct: 71 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQ 130
Query: 234 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYSN 291
+ L+ A+ + PG+ ++IG IQ + + VVR++ GHGIG+ FH +P VLHY +
Sbjct: 131 ESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHYDS 188
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom
Resolution
pdb|1YVM|A Chain A, E. Coli Methionine Aminopeptidase In Complex With
Thiabendazole
pdb|4A6W|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 264
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 119/178 (66%), Gaps = 2/178 (1%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 11 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 70
Query: 175 TSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 233
S+NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T+
Sbjct: 71 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQ 130
Query: 234 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYSN 291
+ L+ A+ + PG+ ++IG IQ + + VVR++ GHGIG+ FH +P VLHY +
Sbjct: 131 ESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHYDS 188
>pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate
Complex
pdb|1C21|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Complex
pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trifluoromethionine
Complex
pdb|1C23|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphonate
Complex
pdb|1C24|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphinate
Complex
Length = 263
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 119/178 (66%), Gaps = 2/178 (1%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNG-AYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I++ A + LGY G+PKSVC
Sbjct: 10 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 69
Query: 175 TSVNECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 233
S+NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T+
Sbjct: 70 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQ 129
Query: 234 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYSN 291
+ L+ A+ + PG+ ++IG IQ + + VVR++ GHGIG+ FH +P VLHY +
Sbjct: 130 ESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHYDS 187
>pdb|3TB5|A Chain A, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|B Chain B, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|C Chain C, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
Length = 264
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 95/176 (53%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
IE M SG L A V + T +KPGIT+ +I+ V I +G + +GY G+ + C
Sbjct: 10 IEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGYEGYKYATCC 69
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDC 235
S+N+ ICHG P + L+DGD I +D+ V L G D+ ++ G+ E L++VTK
Sbjct: 70 SINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEIDRLMEVTKKA 129
Query: 236 LHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYSN 291
L+ I G IG IQ + + YGVVR FVGHGIG H P++ HY
Sbjct: 130 LYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGVVRDFVGHGIGPTIHESPMIPHYGE 185
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 98/177 (55%), Gaps = 1/177 (0%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
IE M+ +G+ A L ++ PG T +++ V ++ P+ GYGG+ + C
Sbjct: 22 IEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGGYKYATCV 81
Query: 176 SVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKD 234
SVNE + HG+P + ++GD +++DV G +GD + T+ G+ D+ + LV+VT++
Sbjct: 82 SVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKELVRVTRE 141
Query: 235 CLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYSN 291
L KAI + PG+ + IQ+ + + V+R +VGHG+GR H DP + +Y
Sbjct: 142 VLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHEDPQIPNYGT 198
>pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With
An Aminoketone Inhibitor 54135.
pdb|1QXY|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle 618
pdb|1QXZ|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle Inhibitor 119
Length = 252
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 95/182 (52%), Gaps = 2/182 (1%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
V E+ ++ ++ G + A+V KPGITT E+D ++ + GA +P+ F
Sbjct: 3 VKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENF 62
Query: 170 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV 229
P C SVNE + HGIP R + +GD +NIDV+ NGY+ DT +F G+ DD + V
Sbjct: 63 PGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKV 122
Query: 230 -KVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPV-VL 287
V AI+ PG + IGK + + A + + V++ GHG+G H P VL
Sbjct: 123 CDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVL 182
Query: 288 HY 289
+Y
Sbjct: 183 NY 184
>pdb|3TAV|A Chain A, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
pdb|3TAV|B Chain B, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
Length = 286
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 93/177 (52%), Gaps = 9/177 (5%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
++ M +G + L K G++T E+D+ +I + GA PS LGY GFP S+C+
Sbjct: 40 LDAMAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFLGYHGFPASICS 99
Query: 176 SVNECICHGIPDSRA-LEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKD 234
SVN+ + HGIP + A L DGD ++ID L+G+HGD++ TF G V L + T+
Sbjct: 100 SVNDQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGTVIPSDEALSEATRL 159
Query: 235 CLHKAISVCAPGMEYKKIGKTI-------QDHADRYNYGVVRQFVGHGIGRVFHADP 284
+ I+ PG + I + DR +G+V + GHGIGR H DP
Sbjct: 160 SMEAGIAAMIPGNRLTDVSHAIELGTRAAEKQFDRA-FGIVDGYGGHGIGRSMHLDP 215
>pdb|2DFI|A Chain A, Crystal Structure Of Pf-Map(1-292)-C
pdb|2DFI|B Chain B, Crystal Structure Of Pf-Map(1-292)-C
Length = 301
Score = 90.5 bits (223), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 91/165 (55%), Gaps = 14/165 (8%)
Query: 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTS 176
E + +G +A +V E A L +PG+ E+ +++ +MI++ G P+ FP V S
Sbjct: 4 EKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FP--VNLS 55
Query: 177 VNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 233
+NE H P D+ L++GD + IDV V+++G+ DT+ T G +DE L++ K
Sbjct: 56 INEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDE---LMEAAK 112
Query: 234 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGR 278
+ L+ AISV G+E K++GK I++ + + + GH I R
Sbjct: 113 EALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIER 157
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGS|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1WKM|A Chain A, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1WKM|B Chain B, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1XGO|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
Length = 295
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 91/165 (55%), Gaps = 14/165 (8%)
Query: 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTS 176
E + +G +A +V E A L +PG+ E+ +++ +MI++ G P+ FP V S
Sbjct: 4 EKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FP--VNLS 55
Query: 177 VNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTK 233
+NE H P D+ L++GD + IDV V+++G+ DT+ T G +DE L++ K
Sbjct: 56 INEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDE---LMEAAK 112
Query: 234 DCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGR 278
+ L+ AISV G+E K++GK I++ + + + GH I R
Sbjct: 113 EALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIER 157
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 73/170 (42%), Gaps = 6/170 (3%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
I+ ++ + ++A E+ + ++PG++ E+ + + GA S F V +
Sbjct: 136 IKILKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGATSSS-----FDIIVAS 190
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDC 235
+ + HG+ + +E GD + +D Y GY D + T G+ D+ + + + +
Sbjct: 191 GLRSALPHGVASEKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKLKEIYNIVLEA 250
Query: 236 LHKAISVCAPGMEYKKIGKTIQDHADRYNYG-VVRQFVGHGIGRVFHADP 284
+ ++ G+ ++ +D+ YG GHGIG H P
Sbjct: 251 QLRGVNGIKAGLTGREADALTRDYITEKGYGEYFGHSTGHGIGLEIHEAP 300
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 78/183 (42%), Gaps = 6/183 (3%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
+ ++ IE + + +A + + A + G E+ V ++ NGA P F
Sbjct: 124 IKTKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGA-EKP----AF 178
Query: 170 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV 229
+ + + HG+ + +E GD + ID+ N Y+ D + T G +++ R +
Sbjct: 179 DTIIASGHRSALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIY 238
Query: 230 KVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYG-VVRQFVGHGIGRVFHADPVVLH 288
++ + +A+ PGM K++ ++ Y YG +GHG+G H P +
Sbjct: 239 EIVLEAQKRAVEAAKPGMTAKELDSIAREIIKEYGYGDYFIHSLGHGVGLEIHEWPRISQ 298
Query: 289 YSN 291
Y
Sbjct: 299 YDE 301
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 77/181 (42%), Gaps = 6/181 (3%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
+ EK I+ + + +A + + A + G E+ V ++ NGA P F
Sbjct: 127 IKSEKEIKIIEKACEIADKAVMAAIEEITEGKKEREVAAKVEYLMKMNGA-EKP----AF 181
Query: 170 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV 229
+ + + HG+ + +E GD + ID+ Y+ D + T G +++ + +
Sbjct: 182 DTIIASGYRSALPHGVASDKRIERGDLVVIDLGALYQHYNSDITRTIVVGSPNEKQKEIY 241
Query: 230 KVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYG-VVRQFVGHGIGRVFHADPVVLH 288
++ + KA+ PG+ K++ ++ Y YG +GHG+G H P V
Sbjct: 242 EIVLEAQKKAVESAKPGITAKELDSIARNIIAEYGYGEYFNHSLGHGVGLEVHEWPRVSQ 301
Query: 289 Y 289
Y
Sbjct: 302 Y 302
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 15/182 (8%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMI--IDNGAYPSPLGYG 167
+ D++ ++ M + R+A +V E T G+ E+ + +I + +G P+
Sbjct: 131 IKDKEEVKMMEHASRIADKVFEEILTWDLIGMKERELALKIELLIRELSDGIAFEPI--- 187
Query: 168 GFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARN 227
V + N H P R + GD I +D GY D + T G++D+
Sbjct: 188 -----VASGENAANPHHEPGERKIRKGDIIILDYGARWKGYCSDITRTIGLGELDERLVK 242
Query: 228 LVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFV---GHGIGRVFHADP 284
+ +V KD A G++ K + ++ + YG F+ GHG+G H +P
Sbjct: 243 IYEVVKDAQESAFKAVREGIKAKDVDSRAREVISKAGYG--EYFIHRTGHGLGLDVHEEP 300
Query: 285 VV 286
+
Sbjct: 301 YI 302
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 21/212 (9%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSAT 215
+GA YPS + V + N CI H + + DGD + ID GY GD + T
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRT 275
Query: 216 F-FCGDVDDEARNLVKVTKDCLHKAISVCAPG 246
F G R + + + L ++ + PG
Sbjct: 276 FPVNGKFTQAQREIYDIVLESLETSLRLYRPG 307
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 21/212 (9%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSAT 215
+GA YPS + V + N CI H + + DGD + ID GY GD + T
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRT 275
Query: 216 F-FCGDVDDEARNLVKVTKDCLHKAISVCAPG 246
F G R + + + L ++ + PG
Sbjct: 276 FPVNGKFTQAQREIYDIVLESLETSLRLYRPG 307
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 21/212 (9%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSAT 215
+GA YPS + V + N CI H + + DGD + ID GY GD + T
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRT 275
Query: 216 F-FCGDVDDEARNLVKVTKDCLHKAISVCAPG 246
F G R + + + L ++ + PG
Sbjct: 276 FPVNGKFTQAQREIYDIVLESLETSLRLYRPG 307
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 73/188 (38%), Gaps = 12/188 (6%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
V DE IE ++ + ++ + ++ G+T EI + + GA F
Sbjct: 133 VKDEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAALLEYTMRKEGAEGV-----AF 187
Query: 170 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV 229
V + + HG + +E GD I ID Y D + G+ DE + +
Sbjct: 188 DTIVASGCRSALPHGKASDKVVERGDVIVIDFGATYENYCADITRVVSIGEPSDEVKEVH 247
Query: 230 KVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQF----VGHGIGRVFHADPV 285
+ + +A+ + G+ K + ++ YG +F +GHGIG H P
Sbjct: 248 SIVLEAQERALKIAKAGVTGKLLDSVAREFIREKGYG---EFFGHSLGHGIGLEVHEGPA 304
Query: 286 VLHYSNYP 293
+ ++ P
Sbjct: 305 ISFRNDSP 312
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 21/212 (9%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSAT 215
+GA YPS + V + N CI H + + DGD + ID GY GD + T
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRT 275
Query: 216 F-FCGDVDDEARNLVKVTKDCLHKAISVCAPG 246
F G R + + + L ++ + PG
Sbjct: 276 FPVNGKFTQAQREIYDIVLESLETSLRLYRPG 307
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 21/212 (9%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSAT 215
+GA YPS + V + N CI H + + DGD + ID GY GD + T
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRT 275
Query: 216 F-FCGDVDDEARNLVKVTKDCLHKAISVCAPG 246
F G R + + + L ++ + PG
Sbjct: 276 FPVNGKFTQAQREIYDIVLESLETSLRLYRPG 307
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 21/212 (9%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSAT 215
+GA YPS + V + N CI H + + DGD + ID GY GD + T
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRT 275
Query: 216 F-FCGDVDDEARNLVKVTKDCLHKAISVCAPG 246
F G R + + + L ++ + PG
Sbjct: 276 FPVNGKFTQAQREIYDIVLESLETSLRLYRPG 307
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 21/212 (9%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSAT 215
+GA YPS + V + N CI H + + DGD + ID GY GD + T
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRT 275
Query: 216 F-FCGDVDDEARNLVKVTKDCLHKAISVCAPG 246
F G R + + + L ++ + PG
Sbjct: 276 FPVNGKFTQAQREIYDIVLESLETSLRLYRPG 307
>pdb|2V6C|A Chain A, Crystal Structure Of Erbb3 Binding Protein 1 (Ebp1)
Length = 353
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 168 GFPKSVCTSVNECICHGIP----DSRALEDGDTINIDVTVYLNGYHGDTSATFFCG---- 219
FP S+ SVN C+CH P L++GD + ID+ V+++G+ + + TF G
Sbjct: 68 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVIGVAQG 125
Query: 220 -DVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGR 278
V +++K C A+ + PG + ++ + A +N + + H + +
Sbjct: 126 TQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQ 185
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 21/212 (9%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSAT 215
+GA YPS + V + N CI + + DGD + ID GY GD + T
Sbjct: 222 HGARYPS------YNTIVGSGENGCILAYTENEXEMRDGDLVLIDAGCEYKGYAGDITRT 275
Query: 216 F-FCGDVDDEARNLVKVTKDCLHKAISVCAPG 246
F G R + + + L ++ + PG
Sbjct: 276 FPVNGKFTQAQREIYDIVLESLETSLRLYRPG 307
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 21/212 (9%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSAT 215
+GA YPS + V + N CI H + + DGD + I GY GD + T
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENECEMRDGDLVLIAAGCEYKGYAGDITRT 275
Query: 216 F-FCGDVDDEARNLVKVTKDCLHKAISVCAPG 246
F G R + + + L ++ + PG
Sbjct: 276 FPVNGKFTQAQREIYDIVLESLETSLRLYRPG 307
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 21/212 (9%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSAT 215
+GA YPS + V + N CI H + + DGD + ID GY G + T
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGAITRT 275
Query: 216 F-FCGDVDDEARNLVKVTKDCLHKAISVCAPG 246
F G R + + + L ++ + PG
Sbjct: 276 FPVNGKFTQAQREIYDIVLESLETSLRLYRPG 307
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 394
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 168 GFPKSVCTSVNECICHGIP----DSRALEDGDTINIDVTVYLNGYHGDTSATFFCG---- 219
FP S+ SVN C+CH P L++GD + ID+ V+++G+ + + TF
Sbjct: 75 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQG 132
Query: 220 -DVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGR 278
V +++K C A+ + PG + ++ + A +N + + H + +
Sbjct: 133 TQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQ 192
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1
Length = 401
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 168 GFPKSVCTSVNECICHGIP----DSRALEDGDTINIDVTVYLNGYHGDTSATFFCG---- 219
FP S+ SVN C+CH P L++GD + ID+ V+++G+ + + TF
Sbjct: 82 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQG 139
Query: 220 -DVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGR 278
V +++K C A+ + PG + ++ + A +N + + H + +
Sbjct: 140 TQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQ 199
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 86/213 (40%), Gaps = 22/213 (10%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDS-RALEDGDTINIDVTVYLNGYHGDTSA 214
+GA YPS + V + N CI H + + DGD + ID GY GD +
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENECXEMRDGDLVLIDAGCEYKGYAGDITR 275
Query: 215 TF-FCGDVDDEARNLVKVTKDCLHKAISVCAPG 246
TF G R + + + L ++ + PG
Sbjct: 276 TFPVNGKFTQAQREIYDIVLESLETSLRLYRPG 308
>pdb|1B59|A Chain A, Complex Of Human Methionine Aminopeptidase-2 Complexed
With Ovalicin
Length = 370
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 28/186 (15%)
Query: 119 MRVSGRLAAQVLEYAGTLVKPGITTDEI----DKAVHQMIIDNGAYPSPLGYG-GFPKSV 173
R + QV +Y + +KPG+T EI + ++I +NG L G FP
Sbjct: 61 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENG-----LNAGLAFPTGC 115
Query: 174 CTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
S+N C H P D+ L+ D ID +++G D + F + + L+K
Sbjct: 116 --SLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCA---FTVTFNPKYDTLLK 170
Query: 231 VTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGV---------VRQFVGHGIGRV-F 280
KD + I + +G+ IQ+ + Y + +R GH IG+
Sbjct: 171 AVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRI 230
Query: 281 HADPVV 286
HA V
Sbjct: 231 HAGKTV 236
>pdb|1R58|A Chain A, Crystal Structure Of Metap2 Complexed With A357300
pdb|1R5G|A Chain A, Crystal Structure Of Metap2 Complexed With A311263
pdb|1R5H|A Chain A, Crystal Structure Of Metap2 Complexed With A320282
pdb|2ADU|A Chain A, Human Methionine Aminopeptidase Complex With 4-Aryl-1,2,3-
Triazole Inhibitor
pdb|1YW7|A Chain A, H-Metap2 Complexed With A444148
pdb|1YW8|A Chain A, H-Metap2 Complexed With A751277
pdb|1YW9|A Chain A, H-Metap2 Complexed With A849519
pdb|2GA2|A Chain A, H-Metap2 Complexed With A193400
pdb|2OAZ|A Chain A, Human Methionine Aminopeptidase-2 Complexed With Sb-587094
pdb|2EA2|A Chain A, H-Metap2 Complexed With A773812
pdb|2EA4|A Chain A, H-Metap2 Complexed With A797859
Length = 369
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 28/186 (15%)
Query: 119 MRVSGRLAAQVLEYAGTLVKPGITTDEI----DKAVHQMIIDNGAYPSPLGYG-GFPKSV 173
R + QV +Y + +KPG+T EI + ++I +NG L G FP
Sbjct: 60 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENG-----LNAGLAFPTGC 114
Query: 174 CTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
S+N C H P D+ L+ D ID +++G D + F + + L+K
Sbjct: 115 --SLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCA---FTVTFNPKYDTLLK 169
Query: 231 VTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGV---------VRQFVGHGIGRV-F 280
KD + I + +G+ IQ+ + Y + +R GH IG+
Sbjct: 170 AVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRI 229
Query: 281 HADPVV 286
HA V
Sbjct: 230 HAGKTV 235
>pdb|1QZY|A Chain A, Human Methionine Aminopeptidase In Complex With Bengamide
Inhibitor Laf153 And Cobalt
pdb|1KQ0|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With D-
Methionine
pdb|1KQ9|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With L-
Methionine
pdb|1BN5|A Chain A, Human Methionine Aminopeptidase 2
pdb|1BOA|A Chain A, Human Methionine Aminopeptidase 2 Complexed With
Angiogenesis Inhibitor Fumagillin
Length = 478
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 28/186 (15%)
Query: 119 MRVSGRLAAQVLEYAGTLVKPGITTDEI----DKAVHQMIIDNGAYPSPLGYG-GFPKSV 173
R + QV +Y + +KPG+T EI + ++I +NG L G FP
Sbjct: 169 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENG-----LNAGLAFPTGC 223
Query: 174 CTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
S+N C H P D+ L+ D ID +++G D + F + + L+K
Sbjct: 224 --SLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCA---FTVTFNPKYDTLLK 278
Query: 231 VTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGV---------VRQFVGHGIGRV-F 280
KD + I + +G+ IQ+ + Y + +R GH IG+
Sbjct: 279 AVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRI 338
Query: 281 HADPVV 286
HA V
Sbjct: 339 HAGKTV 344
>pdb|1B6A|A Chain A, Human Methionine Aminopeptidase 2 Complexed With Tnp-470
Length = 478
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 28/186 (15%)
Query: 119 MRVSGRLAAQVLEYAGTLVKPGITTDEI----DKAVHQMIIDNGAYPSPLGYG-GFPKSV 173
R + QV +Y + +KPG+T EI + ++I +NG L G FP
Sbjct: 169 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENG-----LNAGLAFPTGC 223
Query: 174 CTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
S+N C H P D+ L+ D ID +++G D + F + + L+K
Sbjct: 224 --SLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCA---FTVTFNPKYDTLLK 278
Query: 231 VTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGV---------VRQFVGHGIGRV-F 280
KD + I + +G+ IQ+ + Y + +R GH IG+
Sbjct: 279 AVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRI 338
Query: 281 HADPVV 286
HA V
Sbjct: 339 HAGKTV 344
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 183 HGIPDSRALEDGDTINIDVT-VYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAIS 241
HG D R L+ GD + +D+ Y GY+ D++ T+ GD + + A+
Sbjct: 218 HGYSD-RKLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQQYSALQRAQRAAVD 276
Query: 242 VCAPGMEYKKIGKTIQDHADRYNYGVVRQFV---GHGIGRVFHADPVVLHYSNYP 293
PG+ ++ +D + G+ FV GHGIG H +P ++ + P
Sbjct: 277 AVRPGVTAAQVDAAARDV--LADAGLAEYFVHRTGHGIGLCVHEEPYIVAGNELP 329
>pdb|1CHM|B Chain B, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 1/108 (0%)
Query: 175 TSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKD 234
+ +N H +R + GD ++++ + GY+ T F D+ L +V +
Sbjct: 223 SGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVE 282
Query: 235 CLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQF-VGHGIGRVFH 281
+ + PG I + + + +++ R F GH G + H
Sbjct: 283 VHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSH 330
>pdb|1CHM|A Chain A, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 1/108 (0%)
Query: 175 TSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKD 234
+ +N H +R + GD ++++ + GY+ T F D+ L +V +
Sbjct: 223 SGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVE 282
Query: 235 CLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQF-VGHGIGRVFH 281
+ + PG I + + + +++ R F GH G + H
Sbjct: 283 VHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSH 330
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|B Chain B, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|C Chain C, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|D Chain D, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
Length = 498
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 150 VHQMIIDNGAYPSPLGYGG--FPKSVCTSV 177
V ++ID G+Y + +GY G FP+S+ SV
Sbjct: 23 VSAVVIDPGSYTTNIGYSGSDFPQSILPSV 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,860,403
Number of Sequences: 62578
Number of extensions: 417871
Number of successful extensions: 978
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 857
Number of HSP's gapped (non-prelim): 66
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)