RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021992
(304 letters)
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex;
HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB:
3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A*
1y1n_A 1yj3_A
Length = 285
Score = 396 bits (1020), Expect = e-140
Identities = 119/220 (54%), Positives = 144/220 (65%), Gaps = 1/220 (0%)
Query: 72 RKRLRPGKVSPHRPVPDHIPRPPYVNSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLE 131
R L PG +SP RPVP+ I RP YV S P V + IE MRV+GR+AA L
Sbjct: 4 RTALSPGVLSPTRPVPNWIARPEYVGKPAAQ-EGSEPWVQTPEVIEKMRVAGRIAAGALA 62
Query: 132 YAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRAL 191
AG V PG+TTDE+D+ H+ ++DNGAYPS LGY GFPKS CTS+NE ICHGIPDS +
Sbjct: 63 EAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVI 122
Query: 192 EDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKK 251
DGD +NIDVT Y+ G HGDT+ATF GDV DE R LV T++ +AI+ PG
Sbjct: 123 TDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALSV 182
Query: 252 IGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYSN 291
IG+ I+ +A+R+ Y VVR F GHGIG FH VVLHY
Sbjct: 183 IGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQ 222
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold,
structur genomics, structural genomics consortium, SGC,
hydrolase; 1.95A {Plasmodium falciparum}
Length = 368
Score = 389 bits (1001), Expect = e-136
Identities = 104/226 (46%), Positives = 139/226 (61%), Gaps = 8/226 (3%)
Query: 74 RLRPGKVSPHRPVPDHIPRPPYVNSQKPIG-----IVSGPEVHDEKGIECMRVSGRLAAQ 128
+RP +S VP HI RP Y S P S V++E+ I+ +R + L +
Sbjct: 62 DVRPWPLSKINHVPSHIERPDYAISSIPESELIYKRKSDIYVNNEEEIQRIREACILGRK 121
Query: 129 VLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDS 188
L+YA TLV PG+TTDEID+ VH+ II N AYPS L Y FPKS CTSVNE +CHGIPD
Sbjct: 122 TLDYAHTLVSPGVTTDEIDRKVHEFIIKNNAYPSTLNYYKFPKSCCTSVNEIVCHGIPDY 181
Query: 189 RALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDD---EARNLVKVTKDCLHKAISVCAP 245
R L+ GD INID++V+ G H D + T+F GD++D E + LV+ L +AI C P
Sbjct: 182 RPLKSGDIINIDISVFYKGVHSDLNETYFVGDINDVPKEGKELVETCYFSLMEAIKKCKP 241
Query: 246 GMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYSN 291
GM YK IG I + + N+ VVR + GHG+G++FH++P V H+
Sbjct: 242 GMFYKNIGTLIDAYVSKKNFSVVRSYSGHGVGKLFHSNPTVPHFKK 287
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab;
HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A
2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*
Length = 329
Score = 381 bits (981), Expect = e-133
Identities = 109/224 (48%), Positives = 143/224 (63%), Gaps = 8/224 (3%)
Query: 74 RLRPG-KVSPHRPVPDHIPRPPYVNSQKPIGI-------VSGPEVHDEKGIECMRVSGRL 125
+LRP + P RPVP +I RP Y + + S ++ + IE MR+ RL
Sbjct: 31 KLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRLVCRL 90
Query: 126 AAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGI 185
A +VL+ A ++KPG+TT+EID AVH I YPSPL Y FPKS CTSVNE ICHGI
Sbjct: 91 AREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGI 150
Query: 186 PDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAP 245
PD R L++GD +N+D+T+Y NGYHGD + TFF G+VDD AR LV+ T +CL +AI P
Sbjct: 151 PDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAIDAVKP 210
Query: 246 GMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY 289
G+ Y+++G IQ HA + VVR + GHGI ++FH P V HY
Sbjct: 211 GVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHY 254
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for
infectious disease, S aminopeptidase, protease,
epidermic typhus; 1.70A {Rickettsia prowazekii} PDB:
3mr1_A
Length = 262
Score = 322 bits (827), Expect = e-111
Identities = 87/187 (46%), Positives = 126/187 (67%)
Query: 103 GIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPS 162
G S ++H EK MR +G+LAA+ L++ VKP +TT+ ++ H I + A P+
Sbjct: 1 GPGSMIKIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPA 60
Query: 163 PLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVD 222
PL Y GFPKS+CTS+N +CHGIP+ + L++GD +NIDVTV L+G++GDTS ++ GDV
Sbjct: 61 PLNYKGFPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVA 120
Query: 223 DEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHA 282
+ + L++VT D + K I V PG + IG IQ +A+++NY VVR + GHGIGRVFH
Sbjct: 121 IKPKRLIQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHD 180
Query: 283 DPVVLHY 289
P +L+Y
Sbjct: 181 KPSILNY 187
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor,
antibacterial, hydrolase; HET: U12; 1.00A {Escherichia
coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A*
2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A*
2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A*
3mat_A* 1yvm_A* 2mat_A ...
Length = 263
Score = 300 bits (771), Expect = e-103
Identities = 84/183 (45%), Positives = 120/183 (65%), Gaps = 2/183 (1%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYG 167
+ + IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY
Sbjct: 3 SIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYH 62
Query: 168 GFPKSVCTSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEAR 226
G+PKSVC S+NE +CHGIP D++ L+DGD +NIDVTV +G+HGDTS F G
Sbjct: 63 GYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGE 122
Query: 227 NLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVV 286
L ++T++ L+ A+ + PG+ ++IG IQ + + VVR++ GHGIGR FH +P V
Sbjct: 123 RLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQV 182
Query: 287 LHY 289
LHY
Sbjct: 183 LHY 185
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C;
1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB:
1qxw_A* 1qxz_A*
Length = 252
Score = 291 bits (747), Expect = 2e-99
Identities = 62/182 (34%), Positives = 95/182 (52%), Gaps = 2/182 (1%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
V E+ ++ ++ G + A+V KPGITT E+D ++ + GA +P+ F
Sbjct: 3 VKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENF 62
Query: 170 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDE-ARNL 228
P C SVNE + HGIP R + +GD +NIDV+ NGY+ DT +F G+ DD + +
Sbjct: 63 PGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKV 122
Query: 229 VKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPV-VL 287
V AI+ PG + IGK + + A + + V++ GHG+G H P VL
Sbjct: 123 CDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVL 182
Query: 288 HY 289
+Y
Sbjct: 183 NY 184
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter
feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Length = 264
Score = 281 bits (721), Expect = 3e-95
Identities = 68/180 (37%), Positives = 97/180 (53%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
+ + IE M SG L A V + T +KPGIT+ +I+ V I +G + +GY G+
Sbjct: 4 LKSPREIEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGYEGY 63
Query: 170 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV 229
+ C S+N+ ICHG P + L+DGD I +D+ V L G D+ ++ G+ E L+
Sbjct: 64 KYATCCSINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEIDRLM 123
Query: 230 KVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY 289
+VTK L+ I G IG IQ + + YGVVR FVGHGIG H P++ HY
Sbjct: 124 EVTKKALYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGVVRDFVGHGIGPTIHESPMIPHY 183
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
d.127.1.1
Length = 262
Score = 273 bits (701), Expect = 3e-92
Identities = 57/182 (31%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG 168
+ IE M+ +G+ A L ++ PG T +++ V ++ P+ GYGG
Sbjct: 15 RIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGG 74
Query: 169 FPKSVCTSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARN 227
+ + C SVNE + HG+P + ++GD +++DV G +GD + T+ G+ D+ +
Sbjct: 75 YKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKE 134
Query: 228 LVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVL 287
LV+VT++ L KAI + PG+ + IQ+ + + V+R +VGHG+GR H DP +
Sbjct: 135 LVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHEDPQIP 194
Query: 288 HY 289
+Y
Sbjct: 195 NY 196
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
center for infectious DI protease, hydrolase; 2.15A
{Mycobacterium abscessus}
Length = 286
Score = 259 bits (665), Expect = 2e-86
Identities = 60/181 (33%), Positives = 92/181 (50%), Gaps = 7/181 (3%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
++ M +G + L K G++T E+D+ +I + GA PS LGY GFP S+C+
Sbjct: 40 LDAMAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFLGYHGFPASICS 99
Query: 176 SVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKD 234
SVN+ + HGIP + L DGD ++ID L+G+HGD++ TF G V L + T+
Sbjct: 100 SVNDQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGTVIPSDEALSEATRL 159
Query: 235 CLHKAISVCAPGMEYKKIGKTIQDHA------DRYNYGVVRQFVGHGIGRVFHADPVVLH 288
+ I+ PG + I+ +G+V + GHGIGR H DP + +
Sbjct: 160 SMEAGIAAMIPGNRLTDVSHAIELGTRAAEKQFDRAFGIVDGYGGHGIGRSMHLDPFLPN 219
Query: 289 Y 289
Sbjct: 220 E 220
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 198 bits (506), Expect = 2e-62
Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 15/180 (8%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
E + +G +A +V E A L +PG+ E+ +++ +MI++ G P FP V
Sbjct: 3 TEKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKP------AFP--VNL 54
Query: 176 SVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVT 232
S+NE H P D+ L++GD + IDV V+++G+ DT+ T V E L++
Sbjct: 55 SINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTV---RVGMEEDELMEAA 111
Query: 233 KDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGR-VFHADPVVLHYSN 291
K+ L+ AISV G+E K++GK I++ + + + GH I R HA + +
Sbjct: 112 KEALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNIYR 171
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 187 bits (476), Expect = 9e-57
Identities = 34/200 (17%), Positives = 77/200 (38%), Gaps = 13/200 (6%)
Query: 108 PEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA---YPSPL 164
+ ++ + ++ G +A +VL G++ + + MI++
Sbjct: 17 QTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKIFKKEKE 76
Query: 165 GYGGFPKSVCTSVNECICHGIP----DSRALEDGDTINIDVTVYLNGYHGDTSATFFCG- 219
G SVN C+CH P L++GD + ID+ V+++G+ + + TF
Sbjct: 77 MKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDV 136
Query: 220 ----DVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHG 275
V +++K C A+ + PG + ++ + A +N + + H
Sbjct: 137 AQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQ 196
Query: 276 IGR-VFHADPVVLHYSNYPE 294
+ + V + ++ +
Sbjct: 197 LKQHVIDGEKTIIQNPTDQQ 216
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 173 bits (441), Expect = 5e-51
Identities = 43/193 (22%), Positives = 68/193 (35%), Gaps = 18/193 (9%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPK 171
E+ R + QV +Y + +KPG+T EI + + FP
Sbjct: 162 SEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFP- 220
Query: 172 SVCTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNL 228
S+N C H P D+ L+ D ID +++G D + T + + L
Sbjct: 221 -TGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTV---TFNPKYDTL 276
Query: 229 VKVTKDCLHKAISVCAPGMEYKKIGKTIQDH---------ADRYNYGVVRQFVGHGIGR- 278
+K KD + I + +G+ IQ+ Y +R GH IG+
Sbjct: 277 LKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQY 336
Query: 279 VFHADPVVLHYSN 291
HA V
Sbjct: 337 RIHAGKTVPIVKG 349
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 163 bits (413), Expect = 6e-48
Identities = 34/194 (17%), Positives = 65/194 (33%), Gaps = 20/194 (10%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPK 171
+ ++ R + + ++V+PGIT EI +++ G GFP
Sbjct: 43 ESDILQDARRAAEAHRRARYRVQSIVRPGITLLEIVRSIEDSTRTLLKGERNNGI-GFP- 100
Query: 172 SVCTSVNECICHGIP----DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARN 227
S+N C H L++ D + ID + +G D++ T +
Sbjct: 101 -AGMSMNSCAAHYTVNPGEQDIVLKEDDVLKIDFGTHSDGRIMDSAFTV---AFKENLEP 156
Query: 228 LVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGV---------VRQFVGHGIGR 278
L+ ++ I + IG+ I + Y + + GH I +
Sbjct: 157 LLVAAREGTETGIKSLGVDVRVCDIGRDINEVISSYEVEIGGRMWPIRPISDLHGHSISQ 216
Query: 279 -VFHADPVVLHYSN 291
H + +N
Sbjct: 217 FRIHGGISIPAVNN 230
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 100 bits (251), Expect = 2e-24
Identities = 36/179 (20%), Positives = 76/179 (42%), Gaps = 12/179 (6%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAY-PSPLGYGGFP 170
+ I+ ++ + ++A E+ + ++PG++ E+ + + GA S F
Sbjct: 132 TDSEIKILKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGATSSS------FD 185
Query: 171 KSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
V + + + HG+ + +E GD + +D Y GY D + T G+ D+ + +
Sbjct: 186 IIVASGLRSALPHGVASEKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKLKEIYN 245
Query: 231 VTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFV---GHGIGRVFHADPVV 286
+ + + ++ G+ ++ +D+ YG F GHGIG H P +
Sbjct: 246 IVLEAQLRGVNGIKAGLTGREADALTRDYITEKGYG--EYFGHSTGHGIGLEIHEAPGL 302
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 100 bits (251), Expect = 2e-24
Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 12/179 (6%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFP 170
EK I+ + + +A + + A + G E+ V ++ NGA P+ F
Sbjct: 129 SEKEIKIIEKACEIADKAVMAAIEEITEGKKEREVAAKVEYLMKMNGAEKPA------FD 182
Query: 171 KSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
+ + + HG+ + +E GD + ID+ Y+ D + T G +++ + + +
Sbjct: 183 TIIASGYRSALPHGVASDKRIERGDLVVIDLGALYQHYNSDITRTIVVGSPNEKQKEIYE 242
Query: 231 VTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFV---GHGIGRVFHADPVV 286
+ + KA+ PG+ K++ ++ Y YG F GHG+G H P V
Sbjct: 243 IVLEAQKKAVESAKPGITAKELDSIARNIIAEYGYG--EYFNHSLGHGVGLEVHEWPRV 299
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 99.6 bits (249), Expect = 3e-24
Identities = 38/179 (21%), Positives = 68/179 (37%), Gaps = 12/179 (6%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAY-PSPLGYGGFP 170
DE IE ++ + ++ + ++ G+T EI + + GA + F
Sbjct: 135 DEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAALLEYTMRKEGAEGVA------FD 188
Query: 171 KSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
V + + HG + +E GD I ID Y D + G+ DE + +
Sbjct: 189 TIVASGCRSALPHGKASDKVVERGDVIVIDFGATYENYCADITRVVSIGEPSDEVKEVHS 248
Query: 231 VTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFV---GHGIGRVFHADPVV 286
+ + +A+ + G+ K + ++ YG F GHGIG H P +
Sbjct: 249 IVLEAQERALKIAKAGVTGKLLDSVAREFIREKGYG--EFFGHSLGHGIGLEVHEGPAI 305
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 97.8 bits (244), Expect = 2e-23
Identities = 26/177 (14%), Positives = 60/177 (33%), Gaps = 6/177 (3%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAV-HQMIIDNGAYPSPLGYGGFP 170
+ + +R R++ + G+ E+ A M+ + +
Sbjct: 159 SSEEZBLIRZGARISDIGGAATAAAISAGVPEYEVAIATTBAMVRZIARBFPYVELMDTW 218
Query: 171 KSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
+ +N H R +Z GD ++++ + GY+ T F +VBD + + +
Sbjct: 219 IWFQSGINTDGAHNPVTBRVVZRGDILSLNCFPMIFGYYTALERTLFLZZVBDASLZIWZ 278
Query: 231 VTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFV---GHGIGRVFHADP 284
+ + + PG K I + B ++ R GH G + H
Sbjct: 279 KNTAVHRRGLZLIKPGARCKDIASELNBMYRZWDLL--RYRTFGYGHSFGVLBHYYG 333
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 97.3 bits (243), Expect = 2e-23
Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 11/178 (6%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPK 171
D++ ++ M + R+A +V E T G+ E+ + +I + + F
Sbjct: 133 DKEEVKMMEHASRIADKVFEEILTWDLIGMKERELALKIELLIRELSDGIA------FEP 186
Query: 172 SVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKV 231
V + N H P R + GD I +D GY D + T G++D+ + +V
Sbjct: 187 IVASGENAANPHHEPGERKIRKGDIIILDYGARWKGYCSDITRTIGLGELDERLVKIYEV 246
Query: 232 TKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFV---GHGIGRVFHADPVV 286
KD A G++ K + ++ + YG F+ GHG+G H +P +
Sbjct: 247 VKDAQESAFKAVREGIKAKDVDSRAREVISKAGYG--EYFIHRTGHGLGLDVHEEPYI 302
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 97.4 bits (243), Expect = 3e-23
Identities = 25/183 (13%), Positives = 56/183 (30%), Gaps = 6/183 (3%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYG-GFP 170
+ +R R+A + + E+ Q ++ A
Sbjct: 159 SAEEHVMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELMDTW 218
Query: 171 KSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
+ +N H +R + GD ++++ + GY+ T F D+ L +
Sbjct: 219 TWFQSGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQ 278
Query: 231 VTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFV---GHGIGRVFHADPVVL 287
V + + + PG I + + + +++ + GH G + H
Sbjct: 279 VNVEVHEAGLKLIKPGARCSDIARELNEIFLKHDVL--QYRTFGYGHSFGTLSHYYGREA 336
Query: 288 HYS 290
Sbjct: 337 GLE 339
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 92.0 bits (229), Expect = 2e-21
Identities = 35/179 (19%), Positives = 66/179 (36%), Gaps = 12/179 (6%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPK 171
+ ++ + +G +V + PG T ++ + + I+ G F
Sbjct: 152 EAAEVDALAKAGAAIDRVHARVPAFLVPGRTEAQVAADIAEAIVAEGHSAV-----AFV- 205
Query: 172 SVCTSVNECICHGIPDSRALEDGDTINIDV-TVYLNGYHGDTSATFFCGDVDDEARNLVK 230
V + + H R L+ GD + +D+ Y GY+ D++ T+ GD +
Sbjct: 206 IVGSGPHGADPHHGYSDRKLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQQYS 265
Query: 231 VTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFV---GHGIGRVFHADPVV 286
+ A+ PG+ ++ +D FV GHGIG H +P +
Sbjct: 266 ALQRAQRAAVDAVRPGVTAAQVDAAARDVLADAGLA--EYFVHRTGHGIGLCVHEEPYI 322
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 83.1 bits (205), Expect = 5e-18
Identities = 31/203 (15%), Positives = 57/203 (28%), Gaps = 21/203 (10%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAG-----TLVKPG--ITTDEIDKAVHQMIIDNGAYP 161
+ DE+ + ++ + R++ V+ T + G IT + + +I + +
Sbjct: 176 AIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEAFFQ 235
Query: 162 S-PLGYGGFPKSVCTSVNECIC---------HGIPDSRALEDGDTINIDVTVYLNGYHGD 211
+ L G I GD + + Y +
Sbjct: 236 TKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSN 295
Query: 212 TSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQF 271
T+ D E + K C G I I + F
Sbjct: 296 VGRTYLFDP-DSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKRPDLEPNF 354
Query: 272 V---GHGIGRVFHADPVVLHYSN 291
V G GIG F ++++ N
Sbjct: 355 VRNLGAGIGIEFRESSLLVNAKN 377
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 73.1 bits (179), Expect = 1e-14
Identities = 33/216 (15%), Positives = 68/216 (31%), Gaps = 33/216 (15%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMI-------IDNGAYP 161
EV D + VS + + + ++ + + DE K + + ID+ +
Sbjct: 176 EVKDVNEQAFLSVSSKGSDKFMDLLSNEMVRAV--DEELKITNAKLSDKIENKIDDVKFL 233
Query: 162 SPLG---------YGGFPKSVCTSVNECIC----------HGIPDSRALEDGDTINIDVT 202
L F + I + L I
Sbjct: 234 KQLSPDLSALCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARSTNDQLYGNGCILASCG 293
Query: 203 VYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAI-SVCAPGMEYKKIGKTIQDHAD 261
+ N Y + + TF D +E N + + ++ PG K++ +++ ++ +
Sbjct: 294 IRYNNYCSNITRTFL-IDPSEEMANNYDFLLTLQKEIVTNILKPGRTPKEVYESVIEYIE 352
Query: 262 RYNYGVVRQF---VGHGIGRVFHADPVVLHYSNYPE 294
+ +V F +G IG F +L+ N
Sbjct: 353 KTKPELVPNFTKNIGSLIGLEFRDSNFILNVKNDYR 388
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 70.4 bits (172), Expect = 8e-14
Identities = 29/204 (14%), Positives = 64/204 (31%), Gaps = 28/204 (13%)
Query: 112 DEKGIECMRVSGRLA----AQVLEYAGTLVKPGITT-DEIDKAVHQMIIDNGAYPSPLGY 166
I MR + ++ ++A + V G+T ++I +H + G
Sbjct: 231 GPDEIRAMRCASHACEVAVRKMEDFARSKVGDGVTCENDIWAILHSENVRRGGEWI---- 286
Query: 167 GGFPKSVCTSVNECICHGIPDSRALEDGDTINIDV-TVYLNGYHGDTSATFFCGDVDDEA 225
+ + + R + + I+ D V G D S +++ GD A
Sbjct: 287 --ETRLLASGPRSNPWFQECGPRVCQRNEIISFDTDLVGAYGICTDISRSWWIGDQKPRA 344
Query: 226 RN--LVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADR---YNYGVVRQFV---GHGIG 277
++ + + + + PG+ ++ + +Q HG+G
Sbjct: 345 DMIYAMQHGVEHIRTNMEMLKPGVMIPEL-----SANTHVLDAKFQ--KQKYGCLMHGVG 397
Query: 278 RVFHADPVVLHYSNYPELYRSSIL 301
P+V + + L
Sbjct: 398 LC-DEWPLVAYPDHAVAGAYDYPL 420
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 47.8 bits (114), Expect = 2e-06
Identities = 36/184 (19%), Positives = 56/184 (30%), Gaps = 23/184 (12%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
+ + CMR + ++A Q + A G + EI +A + +
Sbjct: 159 YKTQYELACMREANKIAVQGHKAARDAFFQGKSEFEIQQAYLLATQHSENDNP------Y 212
Query: 170 PKSVCTSVNECICHGI-PDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNL 228
V + N I H D A + ID NGY D + T + + E L
Sbjct: 213 GNIVALNENCAILHYTHFDRVAPATHRSFLIDAGANFNGYAADITRT-YDFTGEGEFAEL 271
Query: 229 VKVTKDCLHKAISVCAPGMEY---------------KKIGKTIQDHADRYNYGVVRQFVG 273
V K ++ APG Y + G+ F
Sbjct: 272 VATMKQHQIALMNQLAPGKLYGELHLDCHQRVAQTLSDFNIVDLSADEIVAKGITSTFFP 331
Query: 274 HGIG 277
HG+G
Sbjct: 332 HGLG 335
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 3e-06
Identities = 43/361 (11%), Positives = 94/361 (26%), Gaps = 94/361 (26%)
Query: 13 RLLSSFVGNRFIHSTQPLNQ---LFGY--NSGKNQVSM----QLSRTFSGLADLLFNRRN 63
+LS + I S ++ LF + + V L + L
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP-IKTEQ 102
Query: 64 LDAEPNRR-----RKRLRPGKVSPHRPVPDHIPRPPYVN-------SQKPIGIVSGPEVH 111
R R RL ++ R +P V +
Sbjct: 103 RQPSMMTRMYIEQRDRLYND---NQVFAKYNVSRLQPYLKLRQALLELRPAKNVL---ID 156
Query: 112 DEKGIECMRVSGR--LAAQVLEYAGTLVKPG-----ITTDEIDKAVHQMIIDNGAY---- 160
G + SG+ +A V K + + + +
Sbjct: 157 ---G---VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 161 PSPLGYGGFPKSVCTSVNE----------------C--ICHGIPDSRALEDGD------- 195
P+ ++ ++ C + + +++A +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 196 -TINIDVTVYLNGYH------GDTSATFFCGDVDDEARNL----VKVTKDCLHKAISVCA 244
T VT +L+ S T DE ++L + L + +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTL----TPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 245 P---GMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYSNYPELYRSSIL 301
P + I ++I+D ++ + + + + VL + Y +++ +
Sbjct: 327 PRRLSI----IAESIRDGLATWDN--WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 302 F 302
F
Sbjct: 381 F 381
Score = 41.8 bits (97), Expect = 2e-04
Identities = 47/333 (14%), Positives = 95/333 (28%), Gaps = 102/333 (30%)
Query: 14 LLSSFVGNRF------IHSTQPLN-QLFG---------YNSGKNQVSMQLSRTFSGLADL 57
LL ++ R + +T P + +++ K+ +L+ ++
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 58 LFNRRNLDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYVNSQKPIGIV-SGPEVHDEKGI 116
L EP RK V P P + + ++ D +
Sbjct: 366 L--------EPAEYRKMFDRLSV-----FPPSAHIPTIL-----LSLIWFDVIKSDVMVV 407
Query: 117 --ECMRVSGRLAA-QVLEYAGTLVKPGITTD-----EIDKAVHQMIIDNGAYPSPLGYGG 168
+ + S L Q E ++ P I + E + A+H+ I+D Y P +
Sbjct: 408 VNKLHKYS--LVEKQPKESTISI--PSIYLELKVKLENEYALHRSIVD--HYNIPKTF-- 459
Query: 169 FPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNL 228
IP D + ++ G+H + R +
Sbjct: 460 -----------DSDDLIPPY---LDQYFYS-----HI-GHHLKNIEH---PERMTLFRMV 496
Query: 229 --------VKVTKDCLHKAISVCAPG------MEYKKIGKTIQDHADRYNYGV--VRQFV 272
K+ D + A G + K I D+ +Y V + F+
Sbjct: 497 FLDFRFLEQKIRHDST----AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 273 ---GHGIGRVFHADPVVLHYSN-----YPELYR 297
+ + D + + + E ++
Sbjct: 553 PKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
Score = 27.1 bits (59), Expect = 8.6
Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 22/96 (22%)
Query: 201 VTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHA 260
++V+ + + + F C DV D ++++ ++ H +S A + T+
Sbjct: 22 LSVFEDAFVDN----FDCKDVQDMPKSILS-KEEIDHIIMSKDAVSGTLRLFW-TLLSKQ 75
Query: 261 DRYNYGVVRQFVGHGIGRVFHADPVVLHYSNYPELY 296
+ +V++FV + NY L
Sbjct: 76 EE----MVQKFVEE------------VLRINYKFLM 95
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 46.1 bits (110), Expect = 7e-06
Identities = 24/175 (13%), Positives = 63/175 (36%), Gaps = 22/175 (12%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
IE ++ + + + K + E++ + +G + F + +
Sbjct: 177 IEIIKEAIAVTKDGIYNVLKHAKADMMEYELEAQFDFTLKSSGIK-----HHAFNTILAS 231
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTKD 234
N + H + +++GD + +D+ + Y+ D S TF G + + + +
Sbjct: 232 GKNATVLHYEDNDAQIQNGDLVLLDLGAQKDYYNADISYTFPANGTFSSRQKQIYNIVLN 291
Query: 235 CLHKAISVCAPGMEYKKIGKTIQDHADRY------------NYGVVRQFVGHGIG 277
L + + PG+++ + +HA + + ++ HG+
Sbjct: 292 ALKETTEIIKPGLKFAA----LNEHAKKVLAEGCKAVGLIQEDEELSKYYYHGVS 342
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation,
XAA-Pro dipeptida dipeptidase, peptidase D, collagen
degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Length = 494
Score = 45.9 bits (109), Expect = 9e-06
Identities = 25/188 (13%), Positives = 59/188 (31%), Gaps = 24/188 (12%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
+ +E +R + +++++ VK G+ E++ G +
Sbjct: 187 FKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRHS----SY 242
Query: 170 PKSVCTSVNECICH----GIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDE 224
+ N + H G P+ R +++GD D+ + D + +F G +
Sbjct: 243 TCICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKFTAD 302
Query: 225 ARNLVKVTKDCLHKAISVCAPGMEY---------------KKIGKTIQDHADRYNYGVVR 269
+ + + + PG+ + +G +
Sbjct: 303 QKAVYEAVLRSSRAVMGAMKPGVWWPDMHRLADRIHLEELAHMGILSGSVDAMVQAHLGA 362
Query: 270 QFVGHGIG 277
F+ HG+G
Sbjct: 363 VFMPHGLG 370
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 44.1 bits (105), Expect = 3e-05
Identities = 39/179 (21%), Positives = 63/179 (35%), Gaps = 23/179 (12%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
I +R +G + A A +PG+ ++ +H +GA Y ++
Sbjct: 181 IAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGA--RYPSYN----TIVG 234
Query: 176 S-VNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTK 233
S N CI H + + DGD + ID GY GD + TF G R + +
Sbjct: 235 SGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVL 294
Query: 234 DCLHKAISVCAPGMEY---------------KKIGKTIQDHADRYNYGVVRQFVGHGIG 277
+ L ++ + PG K+G D + R F HG+
Sbjct: 295 ESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLS 353
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea
center, BI-functional, prolidase, nerve agents, XAA-Pro
DIP hydrolase; 1.80A {Alteromonas macleodii}
Length = 451
Score = 44.3 bits (105), Expect = 3e-05
Identities = 33/189 (17%), Positives = 60/189 (31%), Gaps = 30/189 (15%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
+ ++CMR + +LA + A + G + +I+ A +
Sbjct: 159 YKTDYELDCMREANKLAVAGHKAAEQAFREGKSEFDINLAYAAASRQGDNDVP------Y 212
Query: 170 PKSVCTSVNECICH-GIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-----FCGDVDD 223
V + + I H D+ A ++ + ID +GY D + T+
Sbjct: 213 TSIVALNEHASILHYMQCDTVAPKESRSFLIDAGANYHGYAADITRTYAQEGVH---NSA 269
Query: 224 EARNLVKVTKDCLHKAISVCAPGMEY---------------KKIGKTIQDHADRYNYGVV 268
R+L++ + PG+ Y G + G+
Sbjct: 270 MFRDLIQAVDKVTLTLVDSLKPGVAYTDIHLLAHDGIAQILHDTGMVNLTPPEIVEMGIT 329
Query: 269 RQFVGHGIG 277
R F HGIG
Sbjct: 330 RTFFPHGIG 338
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 1.00
Identities = 31/191 (16%), Positives = 54/191 (28%), Gaps = 86/191 (45%)
Query: 11 QPRLL-------------------SSFVGNRFIHSTQPLNQLFG-YN-----SGKNQVSM 45
QP L ++F G HS L G Y + M
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATFAG----HS------L-GEYAALASLAD----VM 1777
Query: 46 QLSRTFSGLADLLFNRRNL--DAEPNRRRKR-------LRPGKVSPH------RPVPDHI 90
+ L +++F R A P R + PG+V+ + V + +
Sbjct: 1778 ----SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833
Query: 91 PRPP-----YVN-----SQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPG 140
+ VN Q + +G D + ++ VL +
Sbjct: 1834 GKRTGWLVEIVNYNVENQQ--Y-VAAG----DLRALDT-------VTNVLNFIKL---QK 1876
Query: 141 ITTDEIDKAVH 151
I E+ K++
Sbjct: 1877 IDIIELQKSLS 1887
Score = 28.9 bits (64), Expect = 2.8
Identities = 39/246 (15%), Positives = 70/246 (28%), Gaps = 91/246 (36%)
Query: 75 LRP-----GKVSPHRPVP---------------DHIPRPPYVNSQKPIGIVSGPEVHDEK 114
RP G + VP +P P G DE
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPT-----------EGFAADDEP 54
Query: 115 G--IECMRVSGRLAAQVLEYAGTLVKPGI--TTDEIDKA--------------VH----Q 152
E L + L Y +LV+P D++ +H +
Sbjct: 55 TTPAE-------LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107
Query: 153 MIIDNGAYPSPLGYGGFPKSVCTS-VNECICHGIPDS--------RALEDGDTINIDVTV 203
++ +N + L K + + + I P RA+ +G + +
Sbjct: 108 LLQEN---DTTLVK---TKELIKNYITARIMAKRPFDKKSNSALFRAVGEG-----NAQL 156
Query: 204 YL--NGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHAD 261
G G+T F +E R+L + + I A + ++ +T D
Sbjct: 157 VAIFGG-QGNTDDYF------EELRDLYQTYHVLVGDLIKFSAETLS--ELIRTTLDAEK 207
Query: 262 RYNYGV 267
+ G+
Sbjct: 208 VFTQGL 213
Score = 27.7 bits (61), Expect = 6.6
Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 29/122 (23%)
Query: 126 AAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGI 185
+V+ Y G ++ + DE+ ++ + MI N P V S ++ +
Sbjct: 1782 LVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN------------PGRVAASFSQEALQYV 1829
Query: 186 PDSRALEDGDTI-----NIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAI 240
+ G + N++ Y+ GD A +D + V + I
Sbjct: 1830 VERVGKRTGWLVEIVNYNVENQQYVAA--GDLRA------LDT----VTNVLNFIKLQKI 1877
Query: 241 SV 242
+
Sbjct: 1878 DI 1879
>1fm0_E Molybdopterin convertin factor, subunit 2; molybdenum cofactor
biosynthesis, transferase; 1.45A {Escherichia coli}
SCOP: d.41.5.1 PDB: 1fma_E 1nvi_E 3bii_E 1nvj_A
Length = 150
Score = 26.9 bits (60), Expect = 5.8
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 245 PGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVL 287
PGM K + + + + +R+ + R V H IG ++ D +V
Sbjct: 56 PGMTEKALAEIVDEARNRW--PLGRVTVIHRIGELWPGDEIVF 96
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure,
asparaginase 1 family, GATD subfamily, lyase; 3.00A
{Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Length = 438
Score = 27.3 bits (61), Expect = 6.0
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 251 KIGKTIQDHADRYNYGVVRQFVGHG 275
KI + + +YGVV V HG
Sbjct: 156 KIAHEVAKALNSGDYGVV---VAHG 177
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 27.3 bits (60), Expect = 8.6
Identities = 15/71 (21%), Positives = 19/71 (26%), Gaps = 6/71 (8%)
Query: 157 NGAYPSPLGYGGFPKSVCTSVNEC-----ICHGIPDSRALEDGDTINIDVTVYLNGYHGD 211
N L K VC N C CH + + + GY GD
Sbjct: 82 NQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAEC-IYLGHFSDPMYKCECQTGYAGD 140
Query: 212 TSATFFCGDVD 222
D+D
Sbjct: 141 GLICGEDSDLD 151
>1ugj_A Riken cDNA 2310057J16 protein; structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.41.1.3
Length = 141
Score = 26.0 bits (57), Expect = 8.9
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 19 VGNRFIHSTQPLNQLFGYNSGKNQVSMQLSRTFSGLAD 56
G R + + ++ YNS + + + ++T S D
Sbjct: 86 YGPRTVTPAM-VEGIYKYNSDRKRFTQIPAKTMSMSVD 122
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes
thetaiotaomicron, protein structure initiative II(PSI
II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Length = 357
Score = 26.8 bits (59), Expect = 9.4
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 139 PGITTDEIDKAVHQMIIDNGAYPSPL---GYGGF 169
IT I +A + GA + G GGF
Sbjct: 270 GAITNPMIQEAF-DVATGAGAMAGKVSGAGGGGF 302
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase,
transferase-transferase inhibitor complex; HET: PL8;
1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A*
3lv2_A*
Length = 457
Score = 26.8 bits (60), Expect = 9.6
Identities = 13/62 (20%), Positives = 17/62 (27%), Gaps = 8/62 (12%)
Query: 206 NGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEY-----KKIGKTIQDHA 260
GYHGDT D +L D L + +Y + HA
Sbjct: 175 GGYHGDTFLAMSICDPHGGMHSLW---TDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHA 231
Query: 261 DR 262
Sbjct: 232 GE 233
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.140 0.428
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,845,413
Number of extensions: 301493
Number of successful extensions: 851
Number of sequences better than 10.0: 1
Number of HSP's gapped: 775
Number of HSP's successfully gapped: 48
Length of query: 304
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 211
Effective length of database: 4,105,140
Effective search space: 866184540
Effective search space used: 866184540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)