Query 021993
Match_columns 304
No_of_seqs 180 out of 583
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 12:24:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021993.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021993hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kx6_A Fructose-bisphosphate a 100.0 2E-122 6E-127 885.7 25.0 262 43-304 25-289 (379)
2 3mbd_A Fructose-bisphosphate a 100.0 6E-122 2E-126 873.9 22.1 260 43-304 5-265 (342)
3 3bv4_A Fructose-bisphosphate a 100.0 1E-119 5E-124 859.1 25.8 259 46-304 6-266 (341)
4 3mmt_A Fructose-bisphosphate a 100.0 7E-120 2E-124 861.0 21.9 257 47-304 4-266 (347)
5 2pc4_A 41 kDa antigen, fructos 100.0 2E-118 6E-123 857.7 24.2 261 44-304 14-277 (369)
6 2qap_A Fructose-1,6-bisphospha 100.0 4E-118 1E-122 860.1 25.6 264 41-304 34-299 (391)
7 2iqt_A Fructose-bisphosphate a 100.0 1.4E-90 4.8E-95 649.8 15.6 220 55-304 7-238 (296)
8 3iv3_A Tagatose 1,6-diphosphat 80.4 12 0.00042 35.5 10.7 174 66-267 26-211 (332)
9 3bil_A Probable LACI-family tr 71.8 54 0.0018 29.1 14.1 164 107-295 121-311 (348)
10 2xw6_A MGS, methylglyoxal synt 40.8 49 0.0017 27.5 5.7 82 46-137 12-105 (134)
11 1r88_A MPT51/MPB51 antigen; AL 40.3 70 0.0024 27.4 6.9 54 198-255 224-277 (280)
12 3k0z_A Putative polyketide cyc 34.5 78 0.0027 25.3 5.9 77 219-297 15-92 (159)
13 3h5o_A Transcriptional regulat 33.4 2.4E+02 0.0082 24.5 14.9 164 106-293 116-307 (339)
14 3qk7_A Transcriptional regulat 27.4 2.8E+02 0.0096 23.4 11.4 163 107-293 64-256 (294)
15 2yvq_A Carbamoyl-phosphate syn 26.2 71 0.0024 26.0 4.3 65 46-119 33-107 (143)
16 3sy1_A UPF0001 protein YGGS; e 25.8 3.2E+02 0.011 24.1 8.8 102 124-236 104-212 (245)
17 1dp7_P MHC class II transcript 24.7 42 0.0014 25.5 2.4 19 202-220 20-38 (76)
18 1b93_A Protein (methylglyoxal 24.5 63 0.0022 27.4 3.8 83 46-137 20-113 (152)
19 3k9c_A Transcriptional regulat 24.3 3.2E+02 0.011 23.0 13.1 162 106-293 64-253 (289)
20 3l49_A ABC sugar (ribose) tran 24.3 1.9E+02 0.0067 24.0 6.8 167 107-293 60-261 (291)
21 1ydo_A HMG-COA lyase; TIM-barr 24.3 2.1E+02 0.0072 26.1 7.6 81 193-297 115-201 (307)
22 4do4_A Alpha-N-acetylgalactosa 23.5 83 0.0028 28.9 4.7 55 127-185 86-140 (400)
23 1vmd_A MGS, methylglyoxal synt 23.0 93 0.0032 27.2 4.6 82 46-137 36-129 (178)
24 2hsg_A Glucose-resistance amyl 22.7 3.7E+02 0.013 23.1 11.0 164 106-293 114-307 (332)
25 3egc_A Putative ribose operon 21.9 3.5E+02 0.012 22.6 10.0 164 106-293 62-254 (291)
No 1
>3kx6_A Fructose-bisphosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, glycolysis, lyase, STRU genomics; HET: CIT; 2.10A {Babesia bovis}
Probab=100.00 E-value=1.8e-122 Score=885.73 Aligned_cols=262 Identities=56% Similarity=0.895 Sum_probs=257.8
Q ss_pred ccccchHHHHHHHHHHhcCCCCceEeecCCCcchHHHhhhcCCCCchhhhhhhhhhhccCCCCCCceeEEeecccccccc
Q 021993 43 IRAGAYTEELVKTAKTIASPGRGILAIDESNATCGKRLASIGLDNTETNRQAYRQLLLTTPGLGDYISGAILFEETLYQS 122 (304)
Q Consensus 43 ~~~~~~~~eL~~tA~~i~a~GKGIlA~DES~gt~~Krl~~iGvente~nrr~yR~ll~ttp~~~~~IsGvILfeETl~q~ 122 (304)
.+.+++++||++||++|++|||||||+|||+|||+|||++|||||||+|||+||++|||||+|++||||||||||||||+
T Consensus 25 ~~~~~~~~eL~~~A~~ivapGKGiLAADES~gT~~Krl~~iGventeenrr~yR~lLftsp~~~~~IsGvILFeETl~Qk 104 (379)
T 3kx6_A 25 KLSQERAKELAENASFIASPGKGILAADESTGTIQKRFDNVGVENTEKNRAEYRSILFTTKGLGKYISGCILFEETLFQQ 104 (379)
T ss_dssp SCCHHHHHHHHHHHHHHTCTTCEEEEECCCHHHHHHHHHTTTCCCCHHHHHHHHHHHHTCTTGGGTEEEEEECHHHHTCB
T ss_pred hcChHHHHHHHHHHHHHhCCCCceEEecCCCCcHHHHHHHcCCCCcHHHHHHHHHHhhcCcccccceeEEEcchhhcccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcchHHHHHhCCccceeecCCCcccCCCCCCCCccCChhHHHHHHHHHhhcCCccccceeeeecC-C--CCCHHHHH
Q 021993 123 TTDGKKFVDCLREEKIVPGIKVDKGLVPLPGSNNESWCQGLDGLASRSTEYYKQGARFAKWRTVVSIP-C--GPSALAVK 199 (304)
Q Consensus 123 ~~dG~~~~~~L~~kGIvPGIKVDkGl~~l~g~~ge~~t~GLD~L~~R~~~y~~~Ga~FaKWRsVi~i~-~--~Ps~~aI~ 199 (304)
++||+||+|+|+++|||||||||||++||+|++||++|||||||++||++||++|||||||||||+|. + .||..+|.
T Consensus 105 ~~dG~pf~~~L~~kGIvPGIKVDkG~~pl~g~~ge~~tqGLDgL~eRca~y~~~Ga~FAKWR~Vlki~~~~g~PS~~aI~ 184 (379)
T 3kx6_A 105 APNGQNMVDLLRAEGILPGIKVDKGLVTIPNTDEEVSTTGLDGLAERCQKYYNAGARFAKWRAVLSIDVKKNKPSNLSIL 184 (379)
T ss_dssp CTTSCBHHHHHHHHTCEEEEECCCCEEECTTSSSCEEECCCTTHHHHHHHHHHTTCCEEEEEEEECCBTTTTBSCHHHHH
T ss_pred ccCCCCHHHHHHHCCCccEEEcCCCccccCCCCCCccCCChHHHHHHHHHHhhcCCCceeeeeeEeecCCCCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999994 4 69999999
Q ss_pred HHHHHHHHHHHHHHhCCceeeecceecCCCCCCHHHHHHHHHHHHHHHHHHHHhCCcccccccccccccCCCCCCCCCCC
Q 021993 200 EAAWGLARYAAISQDNGLVPIVEPEILLDGDHPIERTLEVAEKVWSEVFFYLAENNVVLEGILLKPSMVTPGAEHKEKAS 279 (304)
Q Consensus 200 ~na~~LAryAaicQ~~GLVPIVEPEVl~dg~h~ie~c~~Vte~vL~~vf~aL~~~~V~LEG~lLKpnMV~pG~~~~~~~~ 279 (304)
+|++.|||||+|||++||||||||||||||||||++|++|||+||++||++|++|||||||||||||||+||++|+.|++
T Consensus 185 ena~~LArYA~icQ~~GLVPIVEPEVl~dGdHdi~~c~~Vte~VLa~vykaL~dh~V~LEG~lLKPnMV~pG~~~~~k~s 264 (379)
T 3kx6_A 185 ETAHTLARYAAICQENGLVPIVEPEILADGDHSIEVCAEVTERVLAAVFKALNDHKVLLEGALLKPNMVTQGVDCKDKPA 264 (379)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEECCCCCCCCTTCSCCCC
T ss_pred HHHHHHHHHHHHHHHcCcceeeeeeeCCCCCcCHHHHHHHHHHHHHHHHHHHHhCCccccCcccccCcccCCCcCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCCCCCCCccC
Q 021993 280 PETIAKYTLTMLKRRVPPAVPGIMV 304 (304)
Q Consensus 280 ~eeVA~~Tv~~L~rtvP~avpGI~F 304 (304)
|||||++||++|+||||++||||+|
T Consensus 265 ~eeVA~aTv~~L~rtVP~avpGI~F 289 (379)
T 3kx6_A 265 PQTVGFLTSRALRRTVPPALPGVMF 289 (379)
T ss_dssp HHHHHHHHHHHHHTTCCTTSCEEEE
T ss_pred HHHHHHHHHHHHHhcCCcccCccee
Confidence 9999999999999999999999998
No 2
>3mbd_A Fructose-bisphosphate aldolase; glycolysis, lyase, schiff base; 2.00A {Encephalitozoon cuniculi} PDB: 3mbf_A* 3qrh_A
Probab=100.00 E-value=5.8e-122 Score=873.91 Aligned_cols=260 Identities=39% Similarity=0.616 Sum_probs=255.0
Q ss_pred ccccchHHHHHHHHHHhcCCCCceEeecCCCcchHHHhhhcCCCCchhhhhhhhhhhccCCCCCCceeEEeecccccccc
Q 021993 43 IRAGAYTEELVKTAKTIASPGRGILAIDESNATCGKRLASIGLDNTETNRQAYRQLLLTTPGLGDYISGAILFEETLYQS 122 (304)
Q Consensus 43 ~~~~~~~~eL~~tA~~i~a~GKGIlA~DES~gt~~Krl~~iGvente~nrr~yR~ll~ttp~~~~~IsGvILfeETl~q~ 122 (304)
++..++++||.+||++|++|||||||+|||+|||+|||++|||||||||||+||++|||||+|++||||||||||||||+
T Consensus 5 ~~~~~~~~eL~~~A~~iva~GKGiLAADES~gt~~Krl~~iGventeenrr~yR~lL~tsp~~~~~IsGvILfeETl~qk 84 (342)
T 3mbd_A 5 MMDCDHLLRLGMTAKKILENGKGILAADETPKTLGRRFEKLGITNTEENRRKFREILFSTKGIERYIGGVILNQETFEQT 84 (342)
T ss_dssp -CCHHHHHHHHHHHHHHHGGGCEEEEECCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHTCTTGGGTEEEEEECGGGGGCB
T ss_pred cCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCchHHHHHHcCCCCcHHHHHHHHHHHhcCcccccceeEEEcchhhcccc
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcchHHHHHhCCccceeecCCCcccCCCCCCCCccCChhHHHHHHHHHhhcCCccccceeeeecC-CCCCHHHHHHH
Q 021993 123 TTDGKKFVDCLREEKIVPGIKVDKGLVPLPGSNNESWCQGLDGLASRSTEYYKQGARFAKWRTVVSIP-CGPSALAVKEA 201 (304)
Q Consensus 123 ~~dG~~~~~~L~~kGIvPGIKVDkGl~~l~g~~ge~~t~GLD~L~~R~~~y~~~Ga~FaKWRsVi~i~-~~Ps~~aI~~n 201 (304)
++||+||+++|+++|||||||||||++|+ ++||++|||||||++||++||++|||||||||||+|. +.||..+|.+|
T Consensus 85 ~~dG~pf~~~L~~kGIvpGIKVDkG~~pl--~~ge~~tqGLDgL~eR~a~y~~~Ga~FAKWR~Vlki~~~~PS~~aI~en 162 (342)
T 3mbd_A 85 SGSGVPLTELLKKKGIEIGIKLDKGLIDY--KEKEKISVGLEDLDLRCKSSAFKDATFAKWRSLFYFYDGIPSEDCINEN 162 (342)
T ss_dssp CTTSCBHHHHHHHTTCEEEEECCCCEEEE--TTTEEEECCGGGHHHHHTCGGGTTCCEEEEEEEECCBTTBSCHHHHHHH
T ss_pred ccCCCCHHHHHHHCCCeeEEecCCCCcCC--CCCCccccchHHHHHHHHHHHhcCCceeeeeeEEecCCCCCCHHHHHHH
Confidence 99999999999999999999999999999 7899999999999999999999999999999999994 67999999999
Q ss_pred HHHHHHHHHHHHhCCceeeecceecCCCCCCHHHHHHHHHHHHHHHHHHHHhCCcccccccccccccCCCCCCCCCCChH
Q 021993 202 AWGLARYAAISQDNGLVPIVEPEILLDGDHPIERTLEVAEKVWSEVFFYLAENNVVLEGILLKPSMVTPGAEHKEKASPE 281 (304)
Q Consensus 202 a~~LAryAaicQ~~GLVPIVEPEVl~dg~h~ie~c~~Vte~vL~~vf~aL~~~~V~LEG~lLKpnMV~pG~~~~~~~~~e 281 (304)
++.|||||+|||++||||||||||||||||||++|++|||+||++||++|++|||||||||||||||+||++|+.++|||
T Consensus 163 a~~LarYA~icQ~~GLVPIVEPEVl~dGdHdi~~c~~vte~vla~v~kaL~~h~V~lEG~lLKPnMV~pG~~~~~k~s~e 242 (342)
T 3mbd_A 163 CSILAKYAIICQKNGLVPIVEPEVFLEGDYSMKRSYEVTRQILSTLMKYLNYELVYIPGVLIKASYVTSGQLSNEKYTPK 242 (342)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEECCCCCCTTSCCCCCHH
T ss_pred HHHHHHHHHHHHHcCCceeeeeeECCCCCcCHHHHHHHHHHHHHHHHHHHHhCCccccCcccccccccCCCcCCCcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCccC
Q 021993 282 TIAKYTLTMLKRRVPPAVPGIMV 304 (304)
Q Consensus 282 eVA~~Tv~~L~rtvP~avpGI~F 304 (304)
|||++||++|+||||+|||||+|
T Consensus 243 eVA~~Tv~~L~rtVP~avpGI~F 265 (342)
T 3mbd_A 243 KVATFTLRALLSTIPCGIPGIVF 265 (342)
T ss_dssp HHHHHHHHHHHHHCCTTCCEEEE
T ss_pred HHHHHHHHHHHhcCCcccCccee
Confidence 99999999999999999999998
No 3
>3bv4_A Fructose-bisphosphate aldolase A; lyase, acetylation, glycolysis, phosphoprotein, schiff base; HET: 13P; 1.70A {Oryctolagus cuniculus} PDB: 1ado_A* 1ewd_A 1zai_A* 1zah_A* 1zaj_A* 1zal_A 2ot0_A 2ot1_A* 2qut_A 2quv_A 3lge_A 3tu9_A* 3b8d_A 6ald_A* 1ex5_A 1ewe_A 2quu_A 3dfn_A 3dfo_A 3dfp_A ...
Probab=100.00 E-value=1.4e-119 Score=859.14 Aligned_cols=259 Identities=53% Similarity=0.800 Sum_probs=255.8
Q ss_pred cchHHHHHHHHHHhcCCCCceEeecCCCcchHHHhhhcCCCCchhhhhhhhhhhccCCC-CCCceeEEeecccccccccc
Q 021993 46 GAYTEELVKTAKTIASPGRGILAIDESNATCGKRLASIGLDNTETNRQAYRQLLLTTPG-LGDYISGAILFEETLYQSTT 124 (304)
Q Consensus 46 ~~~~~eL~~tA~~i~a~GKGIlA~DES~gt~~Krl~~iGvente~nrr~yR~ll~ttp~-~~~~IsGvILfeETl~q~~~ 124 (304)
.+|++||.+||++|++|||||||+|||+|||+|||++|||||||+|||+||++|||||+ +++||||||||||||||+++
T Consensus 6 ~~~~~eL~~~a~~i~a~GKGiLAADES~gT~~Krl~~iGvente~nrr~yR~ll~tsp~~~~~~IsGvILfeETl~qk~~ 85 (341)
T 3bv4_A 6 PEQKKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIGGVILFHETLYQKAD 85 (341)
T ss_dssp HHHHHHHHHHHHHHTCTTCEEEEECCCHHHHHHHHHTTTCCCCHHHHHHHHHHHHTCCGGGTTTEEEEEECHHHHTCBCT
T ss_pred HHHHHHHHHHHHHHhCCCCceEEecCCCCchhHHHHhcCCCCCchhHHHHHhhhhcCCcccccceEEEEcchhhccccCc
Confidence 57999999999999999999999999999999999999999999999999999999999 59999999999999999999
Q ss_pred CCcchHHHHHhCCccceeecCCCcccCCCCCCCCccCChhHHHHHHHHHhhcCCccccceeeeecC-CCCCHHHHHHHHH
Q 021993 125 DGKKFVDCLREEKIVPGIKVDKGLVPLPGSNNESWCQGLDGLASRSTEYYKQGARFAKWRTVVSIP-CGPSALAVKEAAW 203 (304)
Q Consensus 125 dG~~~~~~L~~kGIvPGIKVDkGl~~l~g~~ge~~t~GLD~L~~R~~~y~~~Ga~FaKWRsVi~i~-~~Ps~~aI~~na~ 203 (304)
||+||+|+|+++|||||||||||++|++|+++|++|||||||++||++||++|||||||||||+|+ +.||..+|.+|++
T Consensus 86 dG~p~~~~L~~~GIvPgIKVDkGl~pl~G~~~e~~t~GLDgL~eR~~~y~~~Ga~FAKWR~Viki~~~~PS~~aI~~na~ 165 (341)
T 3bv4_A 86 DGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLVGLSERCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENAN 165 (341)
T ss_dssp TSCBHHHHHHTTTCEEEEECCCCEEECTTSSSCEEECCCTTHHHHHHHHHHTTCCEEEEEEEECCBTTBSCHHHHHHHHH
T ss_pred CCcCHHHHHHHCCCceEEEcCCCcCcCCCCCCCcCCCChhHHHHHHHHHHhcCCcceeeeeEEecCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999995 7799999999999
Q ss_pred HHHHHHHHHHhCCceeeecceecCCCCCCHHHHHHHHHHHHHHHHHHHHhCCcccccccccccccCCCCCCCCCCChHHH
Q 021993 204 GLARYAAISQDNGLVPIVEPEILLDGDHPIERTLEVAEKVWSEVFFYLAENNVVLEGILLKPSMVTPGAEHKEKASPETI 283 (304)
Q Consensus 204 ~LAryAaicQ~~GLVPIVEPEVl~dg~h~ie~c~~Vte~vL~~vf~aL~~~~V~LEG~lLKpnMV~pG~~~~~~~~~eeV 283 (304)
.|||||+|||++||||||||||||||||||++|++||++||+++|++|++|||+|||||||||||+||++|+.+++||||
T Consensus 166 ~LaryA~icQ~~GLVPIVEPEVl~dg~h~l~~~~~vte~vL~~~~~aL~d~~V~LegtLLKPnMV~pg~~~~~~~~~e~v 245 (341)
T 3bv4_A 166 VLARYASICQQNGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACTQKYSHEEI 245 (341)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEECCCCCCCCTTCSSCCCHHHH
T ss_pred HHHHHHHHHHHcCcceeecceECCCCCCCHHHHHHHHHHHHHHHHHHhcCCeEEecCccCcCccccCCCcccccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCCccC
Q 021993 284 AKYTLTMLKRRVPPAVPGIMV 304 (304)
Q Consensus 284 A~~Tv~~L~rtvP~avpGI~F 304 (304)
|++||++|+|||||+||||+|
T Consensus 246 a~~Tv~~l~rtvP~aVpgI~f 266 (341)
T 3bv4_A 246 AMATVTALRRTVPPAVTGVTF 266 (341)
T ss_dssp HHHHHHHHHTTSCTTSCEEEE
T ss_pred HHHHHHHHhhcCCcccCeeee
Confidence 999999999999999999998
No 4
>3mmt_A Fructose-bisphosphate aldolase; ssgcid, structural genomics, seattle structural GE center for infectious disease, hydrolase; HET: 2FP; 2.35A {Bartonella henselae} SCOP: c.1.10.0
Probab=100.00 E-value=6.8e-120 Score=861.01 Aligned_cols=257 Identities=49% Similarity=0.776 Sum_probs=253.0
Q ss_pred chHHHHHHHHHHhcCCCCceEeecCCCcchHHHhhhcCCCCchhhhhhhhhhhccC-CCCCCceeEEeeccccccccccC
Q 021993 47 AYTEELVKTAKTIASPGRGILAIDESNATCGKRLASIGLDNTETNRQAYRQLLLTT-PGLGDYISGAILFEETLYQSTTD 125 (304)
Q Consensus 47 ~~~~eL~~tA~~i~a~GKGIlA~DES~gt~~Krl~~iGvente~nrr~yR~ll~tt-p~~~~~IsGvILfeETl~q~~~d 125 (304)
.+.+||++||++|++|||||||+|||+|||+|||++|||||||||||+||++|||| |+|++||||||||||||||+++|
T Consensus 4 ~~~~eL~~~A~~iva~GKGiLAaDES~gT~~Krl~~iGventeenrr~yR~lL~ts~p~~~~~IsGvILfeETl~Qk~~d 83 (347)
T 3mmt_A 4 SMNERLEDIALTLVGAGKGILAADESTATIGKRFESIGVECTEDNRRAYREMLFTAKEAMESAISGVILFDETLRQKAST 83 (347)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHTCHHHHHHTEEEEEECHHHHTCBCTT
T ss_pred hHHHHHHHHHHHHhCCCCceEEecCCCCcHHHHHHHcCCCCcHHHHHHHHHHHhcCCcccccceeEEEecHHhccccCcC
Confidence 35589999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CcchHHHHHhCCccceeecCCCcccCCCCCCCCccCChhHHHHHHHHHhhcCCccccceeeeecC--CCCCHHHHHHHHH
Q 021993 126 GKKFVDCLREEKIVPGIKVDKGLVPLPGSNNESWCQGLDGLASRSTEYYKQGARFAKWRTVVSIP--CGPSALAVKEAAW 203 (304)
Q Consensus 126 G~~~~~~L~~kGIvPGIKVDkGl~~l~g~~ge~~t~GLD~L~~R~~~y~~~Ga~FaKWRsVi~i~--~~Ps~~aI~~na~ 203 (304)
|+||+++|+++|||||||||||++||+|++||++|||||||.+||++||++|||||||||||+|. +.||..+|.+|++
T Consensus 84 G~pf~~~L~~kGIvpGIKVDkG~~pl~G~~ge~~tqGLDgL~eR~a~y~~~Ga~FAKWR~Viki~~~~~PS~~aI~~na~ 163 (347)
T 3mmt_A 84 GQMLTDLIRDAGAVPGIKVDTGAKPLAAFPQETITEGLDGLRERLKDYYTLGARFAKWRAVIAIDAQTLPTRGAISQNAQ 163 (347)
T ss_dssp SSBHHHHHHHTTCEEEEECCCCEEECTTSTTCEEECCCTTHHHHHHHHHHTTCCEEEEEEEECCCSSSCSCHHHHHHHHH
T ss_pred CCCHHHHHHhCCCccEEEcCCCcccCCCCCCCccCCCchHHHHHHHHHHhcCCcceeeeeEEecCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999995 5799999999999
Q ss_pred HHHHHHHHHHhCCceeeecceecCCC---CCCHHHHHHHHHHHHHHHHHHHHhCCcccccccccccccCCCCCCCCCCCh
Q 021993 204 GLARYAAISQDNGLVPIVEPEILLDG---DHPIERTLEVAEKVWSEVFFYLAENNVVLEGILLKPSMVTPGAEHKEKASP 280 (304)
Q Consensus 204 ~LAryAaicQ~~GLVPIVEPEVl~dg---~h~ie~c~~Vte~vL~~vf~aL~~~~V~LEG~lLKpnMV~pG~~~~~~~~~ 280 (304)
.|||||+|||++|||||||||||||| ||||++|++||++||++||++|++|||||||||||||||+||++ +.|+||
T Consensus 164 ~LarYA~icQ~~GLVPIVEPEVl~dG~~~dHdi~~c~~Vte~VL~~v~kaL~dh~V~LEG~lLKPnMV~pG~~-~~k~s~ 242 (347)
T 3mmt_A 164 ALARYAALCQEAGLVPIVEPEVLMDGPSRQHSITRCFEVTKVVLHTVFKELFEARVLFEGMILKPNMVIDGKD-ARIASV 242 (347)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEECSSSSCCCCCHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEECCCCSCCCTT-SCCCCH
T ss_pred HHHHHHHHHHHcCccceeCceEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCccccCcccccccccCCCC-CCcCCH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999 889999
Q ss_pred HHHHHHHHHHhccCCCCCCCCccC
Q 021993 281 ETIAKYTLTMLKRRVPPAVPGIMV 304 (304)
Q Consensus 281 eeVA~~Tv~~L~rtvP~avpGI~F 304 (304)
||||++||++|+||||+|||||+|
T Consensus 243 eevA~~Tv~~L~rtVP~avpGI~F 266 (347)
T 3mmt_A 243 EEVAEKTVHVLKQTVPAAVPGIAF 266 (347)
T ss_dssp HHHHHHHHHHHHHHSCTTSCEEEE
T ss_pred HHHHHHHHHHHHhhCCcccCccee
Confidence 999999999999999999999998
No 5
>2pc4_A 41 kDa antigen, fructose-bisphosphate aldolase; invasion machinery, structu genomics, PSI, protein structure initiative; 2.40A {Plasmodium falciparum} PDB: 2eph_A 1a5c_A
Probab=100.00 E-value=1.9e-118 Score=857.74 Aligned_cols=261 Identities=55% Similarity=0.857 Sum_probs=257.0
Q ss_pred cccchHHHHHHHHHHhcCCCCceEeecCCCcchHHHhhhcCCCCchhhhhhhhhhhccCCCCCCceeEEeeccccccccc
Q 021993 44 RAGAYTEELVKTAKTIASPGRGILAIDESNATCGKRLASIGLDNTETNRQAYRQLLLTTPGLGDYISGAILFEETLYQST 123 (304)
Q Consensus 44 ~~~~~~~eL~~tA~~i~a~GKGIlA~DES~gt~~Krl~~iGvente~nrr~yR~ll~ttp~~~~~IsGvILfeETl~q~~ 123 (304)
...++++||.+||++|++|||||||+|||+|||+|||++|||||||+|||+||+||||||++++||||||||||||||++
T Consensus 14 ~~~~~~~eL~~~a~~iva~GKGiLAADES~gT~~Krl~~iGventeenrr~yR~ll~tsp~~~~~IsGvILfeETl~qk~ 93 (369)
T 2pc4_A 14 LPADVAEELATTAQKLVQAGKGILAADESTQTIKKRFDNIKLENTIENRASYRDLLFGTKGLGKFISGAILFEETLFQKN 93 (369)
T ss_dssp CCHHHHHHHHHHHHHHTCTTCEEEEECCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHTCTTCTTTEEEEEECHHHHTCBC
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEecCCCCchHHHHHHcCCCCchHHHHHHHHHhccCCCcccceEEEEcchHhccCcC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHhCCccceeecCCCcccCCCCCCCCccCChhHHHHHHHHHhhcCCccccceeeeecC---CCCCHHHHHH
Q 021993 124 TDGKKFVDCLREEKIVPGIKVDKGLVPLPGSNNESWCQGLDGLASRSTEYYKQGARFAKWRTVVSIP---CGPSALAVKE 200 (304)
Q Consensus 124 ~dG~~~~~~L~~kGIvPGIKVDkGl~~l~g~~ge~~t~GLD~L~~R~~~y~~~Ga~FaKWRsVi~i~---~~Ps~~aI~~ 200 (304)
+||+||+|+|+++|||||||||||++||+|+++|++|||||||++||++||++|||||||||||+|. +.||..+|.+
T Consensus 94 ~dG~pf~~~L~~kGIvPGIKVDkGl~pl~g~~~e~~tqGLDgL~eR~a~y~~~Ga~FAKWR~Viki~~~~~~PS~~aI~~ 173 (369)
T 2pc4_A 94 EAGVPMVNLLHNENIIPGIKVDKGLVNIPCTDEEKSTQGLDGLAERCKEYYKAGARFAKWRTVLVIDTAKGKPTDLSIHE 173 (369)
T ss_dssp TTSCBHHHHHHHHTCEEEEECCCCEEECTTSSSCEEECCCTTHHHHHHHHHHHTCCEEEEEEEECCBGGGTBSCHHHHHH
T ss_pred cCCcCHHHHHHHCCCceEEEcCCCcccCCCCCCCcCCCChhhHHHHHHHHHhCCCCeeeeeEEEEecCCCCCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999994 6799999999
Q ss_pred HHHHHHHHHHHHHhCCceeeecceecCCCCCCHHHHHHHHHHHHHHHHHHHHhCCcccccccccccccCCCCCCCCCCCh
Q 021993 201 AAWGLARYAAISQDNGLVPIVEPEILLDGDHPIERTLEVAEKVWSEVFFYLAENNVVLEGILLKPSMVTPGAEHKEKASP 280 (304)
Q Consensus 201 na~~LAryAaicQ~~GLVPIVEPEVl~dg~h~ie~c~~Vte~vL~~vf~aL~~~~V~LEG~lLKpnMV~pG~~~~~~~~~ 280 (304)
|++.|||||+|||++||||||||||||||||||++|++||++||+++|++|++|||+|||||||||||+||++|+.++||
T Consensus 174 na~~LArYA~icQ~~GLVPIVEPEVl~dG~h~l~~~~~vte~vL~~~~~aL~d~~V~LegtLLKpnmv~~G~~~~~k~s~ 253 (369)
T 2pc4_A 174 TAWGLARYASICQQNRLVPIVEPEILADGPHSIEVCAVVTQKVLSCVFKALQENGVLLEGALLKPNMVTAGYECTAKTTT 253 (369)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEECCCCCCCCTTCSSCCCH
T ss_pred HHHHHHHHHHHHHHcCccceecceECCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEecCccCCCccccccccccccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCccC
Q 021993 281 ETIAKYTLTMLKRRVPPAVPGIMV 304 (304)
Q Consensus 281 eeVA~~Tv~~L~rtvP~avpGI~F 304 (304)
||||++||++|+|||||+||||+|
T Consensus 254 e~vA~~Tv~~L~rtvPpaVpgI~f 277 (369)
T 2pc4_A 254 QDVGFLTVRTLRRTVPPALPGVVF 277 (369)
T ss_dssp HHHHHHHHHHHHHHCCTTSCEEEE
T ss_pred HHHHHHHHHHHHhcCCccCCeeee
Confidence 999999999999999999999998
No 6
>2qap_A Fructose-1,6-bisphosphate aldolase; beta barrel, fructose-1,6-bisphosphate teminal tail, lyase; 1.59A {Leishmania mexicana} SCOP: c.1.10.1 PDB: 2qdg_A* 2qdh_A* 1epx_A 1f2j_A
Probab=100.00 E-value=3.6e-118 Score=860.11 Aligned_cols=264 Identities=47% Similarity=0.803 Sum_probs=258.8
Q ss_pred ccccccchHHHHHHHHHHhcCCCCceEeecCCCcchHHHhhhcCCCCchhhhhhhhhhhccCCCCCCceeEEeecccccc
Q 021993 41 VPIRAGAYTEELVKTAKTIASPGRGILAIDESNATCGKRLASIGLDNTETNRQAYRQLLLTTPGLGDYISGAILFEETLY 120 (304)
Q Consensus 41 ~~~~~~~~~~eL~~tA~~i~a~GKGIlA~DES~gt~~Krl~~iGvente~nrr~yR~ll~ttp~~~~~IsGvILfeETl~ 120 (304)
++....++++||.+||++|++|||||||+|||+|||+|||++|||||||+|||+||+||||||++++|||||||||||||
T Consensus 34 ~~~~~~~~~~eL~~~a~~iva~GKGiLAADES~gT~~Krl~~iGventeenrr~yR~lL~tsp~~~~~IsGvILFeETl~ 113 (391)
T 2qap_A 34 YNRLKTPYESELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRALMLEAEGFEQYISGVILHDETVG 113 (391)
T ss_dssp GCSCCCTTHHHHHHHHHHHTCTTCEEEEECCCTTTHHHHHGGGTCCCCHHHHHHHHHHHHTCTTGGGTEEEEEECHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCceEEecCCCCchHHHHHhcCCCCCchhhHHHHHheecCCCccCceEEEEcchHhcc
Confidence 34445789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcchHHHHHhCCccceeecCCCcccCC-CCCCCCccCChhHHHHHHHHHhhcCCccccceeeeecC-CCCCHHHH
Q 021993 121 QSTTDGKKFVDCLREEKIVPGIKVDKGLVPLP-GSNNESWCQGLDGLASRSTEYYKQGARFAKWRTVVSIP-CGPSALAV 198 (304)
Q Consensus 121 q~~~dG~~~~~~L~~kGIvPGIKVDkGl~~l~-g~~ge~~t~GLD~L~~R~~~y~~~Ga~FaKWRsVi~i~-~~Ps~~aI 198 (304)
|+++||+||+|+|+++|||||||||||++||+ |+++|++|||||||++||++||++|||||||||||+|+ +.||..+|
T Consensus 114 Qk~~dG~pf~~~L~~kGIvPGIKVDkGl~pl~~G~~~e~~tqGLDgL~eR~a~y~~~Ga~FAKWRsViki~~~~PS~~aI 193 (391)
T 2qap_A 114 QKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQMTEGLDGYVKRASAYYKKGCRFCKWRNVYKIQNGTVSESAV 193 (391)
T ss_dssp CBCTTSSBHHHHHHHTTCEEEEECCCCEEECSSSSTTCEEECCCTTHHHHHHHHHHTTCCEEEEEEEECCBTTBCCHHHH
T ss_pred CcCcCCcCHHHHHHHCCCeeEEEecCCcccccCCCCCCccCCChhHHHHHHHHHHhcCCcceeeeeEEeccCCCCCHHHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999995 77999999
Q ss_pred HHHHHHHHHHHHHHHhCCceeeecceecCCCCCCHHHHHHHHHHHHHHHHHHHHhCCcccccccccccccCCCCCCCCCC
Q 021993 199 KEAAWGLARYAAISQDNGLVPIVEPEILLDGDHPIERTLEVAEKVWSEVFFYLAENNVVLEGILLKPSMVTPGAEHKEKA 278 (304)
Q Consensus 199 ~~na~~LAryAaicQ~~GLVPIVEPEVl~dg~h~ie~c~~Vte~vL~~vf~aL~~~~V~LEG~lLKpnMV~pG~~~~~~~ 278 (304)
.+|++.|||||+|||++||||||||||||||||||++|++|||+||++||++|++|+|+|||||||||||+||++|+.++
T Consensus 194 ~~na~~LArYA~icQ~~GLVPIVEPEVl~dG~H~l~~c~~Vte~vla~v~kaL~d~~V~LegtLLKPnMv~pG~~~~~k~ 273 (391)
T 2qap_A 194 RFNAETLARYAILSQMSGLVPIVEPEVMIDGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKPNMVVPGAESGKTA 273 (391)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEECCCCCCCCTTSSCCC
T ss_pred HHHHHHHHHHHHHHHHcCceeeecceECCCCCCCHHHHHHHHHHHHHHHHHHhcCCeEEecCccccCcccccCccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhccCCCCCCCCccC
Q 021993 279 SPETIAKYTLTMLKRRVPPAVPGIMV 304 (304)
Q Consensus 279 ~~eeVA~~Tv~~L~rtvP~avpGI~F 304 (304)
+|||||++||++|+|||||+||||+|
T Consensus 274 s~eevA~~Tv~~L~rtVPpaVpgIvF 299 (391)
T 2qap_A 274 APEQVAHYTVMTLARTMPAMLPGVMF 299 (391)
T ss_dssp CHHHHHHHHHHHHHHHSBTTCCEEEE
T ss_pred CHHHHHHHHHHHHhhcCCCccCeeee
Confidence 99999999999999999999999998
No 7
>2iqt_A Fructose-bisphosphate aldolase class 1; TIM berrel, structural genomics, PSI-2; 2.46A {Porphyromonas gingivalis}
Probab=100.00 E-value=1.4e-90 Score=649.76 Aligned_cols=220 Identities=23% Similarity=0.335 Sum_probs=207.9
Q ss_pred HHHHhcCCCCceEe-ecCCCcchHHHhhhcCCCCchhh--------hhhhhhhhccCCCC-CCceeEEeecccccccccc
Q 021993 55 TAKTIASPGRGILA-IDESNATCGKRLASIGLDNTETN--------RQAYRQLLLTTPGL-GDYISGAILFEETLYQSTT 124 (304)
Q Consensus 55 tA~~i~a~GKGIlA-~DES~gt~~Krl~~iGvente~n--------rr~yR~ll~ttp~~-~~~IsGvILfeETl~q~~~ 124 (304)
...+.++||||||| +|||+|||+|||++|||||||+| ||+||++|||||+| ++||||||||||||||++
T Consensus 7 ~~~~~va~GKGiLAAlDES~gt~~Krl~~iGvente~n~~~e~~~~rr~yR~ll~tsp~~~~~~IsGvILfeeTl~q~~- 85 (296)
T 2iqt_A 7 EQLQQMRQAPGFVGALDQSGGSTPKALKAYGIQPDAYQSEEEMFDLIHQMRTRMITSPAFATGKIIGVILFERTMRGKI- 85 (296)
T ss_dssp HHHHHHHHCCSEEEEECCCGGGHHHHHHHTTCCGGGCCSHHHHHHHHHHHHHHHHHSGGGGSSSEEEEEECHHHHTSEE-
T ss_pred HHHHhcCCCCceEEeecCCCCchHHHHHHcCCCCccccchhhhHHHHHHHhhheecCCCcccCeeeeeeCchhhcCcCC-
Confidence 34456778999885 59999999999999999999999 69999999999999 999999999999999985
Q ss_pred CCcchHHHH-HhCCccceeecCCCcccCC-CCCCCCccCChhHHHHHHHHHhhcCCccccceeeeecCCCCCHHHHHHHH
Q 021993 125 DGKKFVDCL-REEKIVPGIKVDKGLVPLP-GSNNESWCQGLDGLASRSTEYYKQGARFAKWRTVVSIPCGPSALAVKEAA 202 (304)
Q Consensus 125 dG~~~~~~L-~~kGIvPGIKVDkGl~~l~-g~~ge~~t~GLD~L~~R~~~y~~~Ga~FaKWRsVi~i~~~Ps~~aI~~na 202 (304)
||+||+++| +++|||||||||||++|++ |.++|++|||||||++||++||++| |||||||+|++ ..+|.+|+
T Consensus 86 dG~p~~~~Lw~~kGIvpgIKVDkGl~pl~~G~~~e~~tqGLDgL~eR~~~y~~~G---AKWR~Vlki~~---~~aI~~na 159 (296)
T 2iqt_A 86 EGMPTADFLWEKRHIVPFLKVDKGLQDEANGVQLMKPFPELGKLCEEAVGYHVFG---TKMRSVIKQAN---EQGIRDIV 159 (296)
T ss_dssp TTEEHHHHHHHHHCCEEEEECCCCBCCCBTTEECBCCCTTHHHHHHHHHHTTCCE---EEEEEEECSCC---HHHHHHHH
T ss_pred CCeEhHHHHHHhCCCceEEEcCCCccccCCCCCCCccCCChhHHHHHHHHhccCC---CeeeeeeecCc---hhHHHHHH
Confidence 999999999 6899999999999999999 8889999999999999999997665 99999999975 89999999
Q ss_pred HHHHHHHHHHHhCCceeeecceecCCCCCCHHHHHHHHHHHHHHHHHHHHhCCcccccccccccccCCCCCCCCCCChHH
Q 021993 203 WGLARYAAISQDNGLVPIVEPEILLDGDHPIERTLEVAEKVWSEVFFYLAENNVVLEGILLKPSMVTPGAEHKEKASPET 282 (304)
Q Consensus 203 ~~LAryAaicQ~~GLVPIVEPEVl~dg~h~ie~c~~Vte~vL~~vf~aL~~~~V~LEG~lLKpnMV~pG~~~~~~~~~ee 282 (304)
+.|||||+|||++|||||||||||+||+ |+++|++||++||+++|++|++ ||+|||+| ||++| ++++
T Consensus 160 ~~laryA~icq~~GLVPIVEPEVl~dg~-d~~~c~~vte~vL~~v~~aL~~-~V~Legtl-------pg~~~----~~~~ 226 (296)
T 2iqt_A 160 EQQFQWGKEILSHGLVPILEPEVDIHCP-EKAKAEEILKRELLAQLDKMTE-PVMLKITI-------PTVDN----FYKE 226 (296)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEEECTTCT-THHHHHHHHHHHHHHHHHHCSS-CEEEEEEC-------CSSTT----TTHH
T ss_pred HHHHHHHHHHHHcCccceecceECCCCC-CHHHHHHHHHHHHHHHHHHHhh-CcEEeccc-------CCCCC----CHHh
Confidence 9999999999999999999999999999 9999999999999999999999 99999999 99998 6788
Q ss_pred HHHHHHHHhccCCCCCCCCccC
Q 021993 283 IAKYTLTMLKRRVPPAVPGIMV 304 (304)
Q Consensus 283 VA~~Tv~~L~rtvP~avpGI~F 304 (304)
||+ ||+||||+|
T Consensus 227 va~----------ppaVpgVvf 238 (296)
T 2iqt_A 227 IIE----------HPMMLRVVA 238 (296)
T ss_dssp HHT----------STTEEEEEE
T ss_pred hcC----------CCCCCeeee
Confidence 886 999999998
No 8
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=80.39 E-value=12 Score=35.51 Aligned_cols=174 Identities=17% Similarity=0.145 Sum_probs=99.1
Q ss_pred eEeecCCCcchHHHhhhcCCCC-chhhhhhhhhhhccCCCCCCceeEEeeccccccccccCCcchHHHH-HhCCccceee
Q 021993 66 ILAIDESNATCGKRLASIGLDN-TETNRQAYRQLLLTTPGLGDYISGAILFEETLYQSTTDGKKFVDCL-REEKIVPGIK 143 (304)
Q Consensus 66 IlA~DES~gt~~Krl~~iGven-te~nrr~yR~ll~ttp~~~~~IsGvILfeETl~q~~~dG~~~~~~L-~~kGIvPGIK 143 (304)
|+|+|+. +++.+-++..|-.. +.+.-..+++++.. .+..+.+|++|..+ +.+. -.... .+.|++.++
T Consensus 26 ilA~DHR-~sl~~m~~~~~~~~~~~~~l~~~K~lv~~--~~~~~asaILlD~~-~G~~------a~~~~~~~~GLii~~- 94 (332)
T 3iv3_A 26 ALAFDQR-GALKCLMAQYQMKEPTVAQMEELKVLVSE--ELTPYASSILLDPE-YGLP------AAQARDREAGLLLAY- 94 (332)
T ss_dssp EEEECCS-HHHHHHHHTTTTSCCCHHHHHHHHHHHHH--HHGGGSSEEEECTT-TCHH------HHHTSCTTCEEEEEC-
T ss_pred EEEcCCh-hHHHHHHHhcCCCCCChHHHHHHHHHHHH--HHhcCCcEEEEchh-hCHH------HhccccCCCcEEEEe-
Confidence 9999997 46778788777442 33445677777643 24555777665544 3221 11111 456666554
Q ss_pred cCCCcccCCCCC----CCCccCChhHHHHHHHHHhhcCCccccceeeeecCCCCCHHHH-HHHHHHHHHHHHHHHhCCce
Q 021993 144 VDKGLVPLPGSN----NESWCQGLDGLASRSTEYYKQGARFAKWRTVVSIPCGPSALAV-KEAAWGLARYAAISQDNGLV 218 (304)
Q Consensus 144 VDkGl~~l~g~~----ge~~t~GLD~L~~R~~~y~~~Ga~FaKWRsVi~i~~~Ps~~aI-~~na~~LAryAaicQ~~GLV 218 (304)
++ +|.+ |..+..=++.=.++++ ++||..-|--.-+..++.+ .+ .+|...|.|.+.-|++.|+=
T Consensus 95 -E~-----~G~~~~~~gr~p~~l~~~sve~a~---~~GADAVk~lv~~g~d~~~---e~~~~q~~~l~rv~~ec~~~GiP 162 (332)
T 3iv3_A 95 -EK-----TGYDANTTSRLPDCLVDWSIKRLK---EAGADAVKFLLYYDVDGDP---QVNVQKQAYIERIGSECQAEDIP 162 (332)
T ss_dssp -BC-----CCCCTTSSCCCCCBCTTCCHHHHH---HTTCSEEEEEEEECTTSCH---HHHHHHHHHHHHHHHHHHHHTCC
T ss_pred -cc-----CCCCcCCCCCCCccccccCHHHHH---HcCCCEEEEEEEcCCCchH---HHHHHHHHHHHHHHHHHHHcCCc
Confidence 21 2211 1111111222245554 4798877765444333222 33 36677899999999999997
Q ss_pred eeecceec---CCCCCCHHHHHHHHHHHHHHHHHHH--HhCCcccccccccccc
Q 021993 219 PIVEPEIL---LDGDHPIERTLEVAEKVWSEVFFYL--AENNVVLEGILLKPSM 267 (304)
Q Consensus 219 PIVEPEVl---~dg~h~ie~c~~Vte~vL~~vf~aL--~~~~V~LEG~lLKpnM 267 (304)
=++||=.- +.++||.+.. ++--.++....+.+ .+.|+++ +|-.+
T Consensus 163 lllEil~y~~~~~~~~~~~~a-~~~p~~V~~a~R~~~~~elGaDv----~Kve~ 211 (332)
T 3iv3_A 163 FFLEILTYDETISNNSSVEFA-KVKVHKVNDAMKVFSAERFGIDV----LKVEV 211 (332)
T ss_dssp EEEEEEECBTTBSCTTSHHHH-TTHHHHHHHHHHHHTSGGGCCSE----EEECC
T ss_pred eEEEEeccCCCCCCCcchhhh-ccCHHHHHHHHHHHhhcCcCCcE----EEEec
Confidence 78877442 3457777764 44455556667777 3456665 55543
No 9
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=71.76 E-value=54 Score=29.06 Aligned_cols=164 Identities=12% Similarity=0.082 Sum_probs=95.8
Q ss_pred CceeEEeeccccccccccCCcchHHHHHhCCccceeecCCCcccCCCCCCCCccCChhHH--HHHHH-HHhhcCCccccc
Q 021993 107 DYISGAILFEETLYQSTTDGKKFVDCLREEKIVPGIKVDKGLVPLPGSNNESWCQGLDGL--ASRST-EYYKQGARFAKW 183 (304)
Q Consensus 107 ~~IsGvILfeETl~q~~~dG~~~~~~L~~kGIvPGIKVDkGl~~l~g~~ge~~t~GLD~L--~~R~~-~y~~~Ga~FaKW 183 (304)
..+-|+|++.-... .+..+.|.+.| +|.|=+|....... ....-+.|+- ...+. ...+.|.
T Consensus 121 ~~vdgiI~~~~~~~------~~~~~~l~~~~-iPvV~i~~~~~~~~----~~~~V~~D~~~~~~~a~~~L~~~G~----- 184 (348)
T 3bil_A 121 HGVDGIICVPNEEC------ANQLEDLQKQG-MPVVLVDRELPGDS----TIPTATSNPQPGIAAAVELLAHNNA----- 184 (348)
T ss_dssp TTCSCEEECCCGGG------HHHHHHHHHC--CCEEEESSCCSCC-----CCCEEEEECHHHHHHHHHHHHHTTC-----
T ss_pred CCCCEEEEeCCCCC------hHHHHHHHhCC-CCEEEEcccCCCCC----CCCEEEeChHHHHHHHHHHHHHCCC-----
Confidence 56788888753321 14556677777 57777776432101 1112223332 12233 3344563
Q ss_pred eeeeecCCCCCHHHHHHHHHHHHHHHHHHHhCCceeeecceecCCCCCCHHHHHHHHHHHHH---------------HHH
Q 021993 184 RTVVSIPCGPSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDGDHPIERTLEVAEKVWS---------------EVF 248 (304)
Q Consensus 184 RsVi~i~~~Ps~~aI~~na~~LAryAaicQ~~GLVPIVEPEVl~dg~h~ie~c~~Vte~vL~---------------~vf 248 (304)
|.+.-+.+.+.... ...-+.-|-..++++|+ +|++...++.+.+..++.+++.|. .++
T Consensus 185 ~~I~~i~~~~~~~~---~~~R~~Gf~~al~~~g~----~~~~v~~~~~~~~~~~~~~~~ll~~~~~ai~~~nD~~A~g~~ 257 (348)
T 3bil_A 185 LPIGYLSGPMDTST---GRERLEDFKAACANSKI----GEQLVFLGGYEQSVGFEGATKLLDQGAKTLFAGDSMMTIGVI 257 (348)
T ss_dssp CSEEEECCCTTSHH---HHHHHHHHHHHHHHTTC----CCCEEECCCSSHHHHHHHHHHHHHTTCSEEEESSHHHHHHHH
T ss_pred CeEEEEeCCCCCcc---HHHHHHHHHHHHHHcCc----CccEEEcCCCCHHHHHHHHHHHHcCCCCEEEEcChHHHHHHH
Confidence 44545544333221 23345556666899997 567666888898888888887775 368
Q ss_pred HHHHhCCccccc---------ccccccccCCCCCCCCCCChHHHHHHHHHHhccCC
Q 021993 249 FYLAENNVVLEG---------ILLKPSMVTPGAEHKEKASPETIAKYTLTMLKRRV 295 (304)
Q Consensus 249 ~aL~~~~V~LEG---------~lLKpnMV~pG~~~~~~~~~eeVA~~Tv~~L~rtv 295 (304)
++|+++|+...+ +-+ ..++.|... +....+++++...++.|.+.+
T Consensus 258 ~al~~~G~~vP~disvvG~D~~~~-~~~~~p~lt-tv~~~~~~~g~~Av~~l~~~i 311 (348)
T 3bil_A 258 EACHKAGLVIGKDVSVIGFDTHPL-FALQPHPLT-VIDQNVEQLAQRAVSILTELI 311 (348)
T ss_dssp HHHHHTTCCBTTTBEEEEESCCGG-GGGSSSCCC-EEECCHHHHHHHHHHHHHCC-
T ss_pred HHHHHcCCCCCCCeEEEEeCCcHH-HHhcCCCce-EEEcCHHHHHHHHHHHHHHHh
Confidence 899999876432 211 234456543 456678999999999987644
No 10
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=40.84 E-value=49 Score=27.46 Aligned_cols=82 Identities=21% Similarity=0.225 Sum_probs=59.5
Q ss_pred cchHHHHHHHHHHhcCC--CCceEeecCCCcchHHHhhh-cCCCCchhh------hhhhhhhhccCCCCCCceeEEeecc
Q 021993 46 GAYTEELVKTAKTIASP--GRGILAIDESNATCGKRLAS-IGLDNTETN------RQAYRQLLLTTPGLGDYISGAILFE 116 (304)
Q Consensus 46 ~~~~~eL~~tA~~i~a~--GKGIlA~DES~gt~~Krl~~-iGvente~n------rr~yR~ll~ttp~~~~~IsGvILfe 116 (304)
...++++...|+++..- |-.|.| |++|++.|+. -|++-+.-+ |...-++|- +..|.-||-|.
T Consensus 12 D~dK~~~v~~a~~~~~ll~Gf~l~A----T~gTa~~L~e~~Gl~v~~v~k~~~eG~p~I~d~I~-----~geIdlVInt~ 82 (134)
T 2xw6_A 12 DAKKEEMVAFCQRHREVLARFPLVA----TGTTGRRIEEATGLTVEKLLSGPLGGDQQMGARVA-----EGRILAVIFFR 82 (134)
T ss_dssp GGGHHHHHHHHHHTHHHHTTSCEEE----CHHHHHHHHHHHCCCCEECSCGGGTHHHHHHHHHH-----TTCEEEEEEEC
T ss_pred cccHHHHHHHHHHHHHHhCCCEEEE----ccHHHHHHHHhhCceEEEEEecCCCCcchHHHHHH-----CCCccEEEEcc
Confidence 46789999999999997 888998 8999999998 898865432 333334432 57899999999
Q ss_pred c--ccccc-ccCCcchHHHHHhCC
Q 021993 117 E--TLYQS-TTDGKKFVDCLREEK 137 (304)
Q Consensus 117 E--Tl~q~-~~dG~~~~~~L~~kG 137 (304)
+ + .|. ..||..+-..--..+
T Consensus 83 ~pl~-~~~h~~D~~~IrR~A~~~~ 105 (134)
T 2xw6_A 83 DPLT-AQPHEPDVQALLRVCDVHG 105 (134)
T ss_dssp CTTT-CCTTSCCSHHHHHHHHHHT
T ss_pred Cccc-CCCccchHHHHHHHHHHcC
Confidence 8 5 555 577765554443444
No 11
>1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3
Probab=40.33 E-value=70 Score=27.40 Aligned_cols=54 Identities=6% Similarity=-0.101 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHhCCceeeecceecCCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Q 021993 198 VKEAAWGLARYAAISQDNGLVPIVEPEILLDGDHPIERTLEVAEKVWSEVFFYLAENN 255 (304)
Q Consensus 198 I~~na~~LAryAaicQ~~GLVPIVEPEVl~dg~h~ie~c~~Vte~vL~~vf~aL~~~~ 255 (304)
..+++..+++. .++.|.+|+ +=++..+|.|+...-.......|.-+|++|+.|+
T Consensus 224 ~~~~~~~~~~~---L~~~g~~~~-~~~~~~~g~H~~~~w~~~l~~~l~~~~~~~~~~~ 277 (280)
T 1r88_A 224 AMGNSRMFYNQ---YRSVGGHNG-HFDFPASGDNGWGSWAPQLGAMSGDIVGAIRHHH 277 (280)
T ss_dssp HHHHHHHHHHH---HHHTTCCSE-EEECCSSCCSSHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHH---HHHCCCcce-EEEecCCCCcChhHHHHHHHHHHHHHHHHHhhhc
Confidence 45666666655 567884342 3334458999999888888999999999999876
No 12
>3k0z_A Putative polyketide cyclase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS lipoprotein; HET: NHE; 1.91A {Bacillus cereus}
Probab=34.48 E-value=78 Score=25.27 Aligned_cols=77 Identities=9% Similarity=0.099 Sum_probs=53.1
Q ss_pred eeecceecC-CCCCCHHHHHHHHHHHHHHHHHHHHhCCcccccccccccccCCCCCCCCCCChHHHHHHHHHHhccCCCC
Q 021993 219 PIVEPEILL-DGDHPIERTLEVAEKVWSEVFFYLAENNVVLEGILLKPSMVTPGAEHKEKASPETIAKYTLTMLKRRVPP 297 (304)
Q Consensus 219 PIVEPEVl~-dg~h~ie~c~~Vte~vL~~vf~aL~~~~V~LEG~lLKpnMV~pG~~~~~~~~~eeVA~~Tv~~L~rtvP~ 297 (304)
+.++|.-+. ||+.+...... .+.+....|.+++.+++..=..++-|+++.-..........+.+... +..+++.+|-
T Consensus 15 ~~~~p~~~~~d~~~~~~~~~~-n~~~v~~~~~a~~~~d~~~l~~~~a~D~v~~~p~~g~~~G~e~~~~~-~~~~~~~~pd 92 (159)
T 3k0z_A 15 EMPKPKAMTIDPSLSQKEATE-MVHAAQRFYAFWDTGKEELIPQTVTENFFDHTLPKGRPQGTEGLKFA-AQNFRKIVPN 92 (159)
T ss_dssp TSCCCSSEEECTTSCHHHHHH-HHHHHHHHHHHHHHCCGGGHHHHEEEEEEESSCCTTCCSSHHHHHHH-HHHHHTTCCS
T ss_pred cCCCCceeeccCCCChhhhHH-HHHHHHHHHHHHhcCCHHHHHHHcCCCeEEecCCCCCCCCHHHHHHH-HHHHHHhCCC
Confidence 577888765 87777666544 66777889999999988766678889888633211234577887765 5666666653
No 13
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=33.38 E-value=2.4e+02 Score=24.47 Aligned_cols=164 Identities=12% Similarity=0.084 Sum_probs=95.3
Q ss_pred CCceeEEeeccccccccccCCcchHHHHHhCCccceeecCCCcccCCCCCCCCccCChhHH--HHHHH-HHhhcCCcccc
Q 021993 106 GDYISGAILFEETLYQSTTDGKKFVDCLREEKIVPGIKVDKGLVPLPGSNNESWCQGLDGL--ASRST-EYYKQGARFAK 182 (304)
Q Consensus 106 ~~~IsGvILfeETl~q~~~dG~~~~~~L~~kGIvPGIKVDkGl~~l~g~~ge~~t~GLD~L--~~R~~-~y~~~Ga~FaK 182 (304)
...+-|+|++.-. ...+..+.|++.| +|.|=+|.-.. .+ .. .-+.|+- ...+. ...+.|.
T Consensus 116 ~~~vdGiIi~~~~------~~~~~~~~l~~~~-iPvV~~~~~~~-~~---~~--~V~~D~~~~~~~a~~~L~~~G~---- 178 (339)
T 3h5o_A 116 QHRPDGVLITGLS------HAEPFERILSQHA-LPVVYMMDLAD-DG---RC--CVGFSQEDAGAAITRHLLSRGK---- 178 (339)
T ss_dssp TTCCSEEEEECSC------CCTTHHHHHHHTT-CCEEEEESCCS-SS---CC--EEECCHHHHHHHHHHHHHHTTC----
T ss_pred cCCCCEEEEeCCC------CCHHHHHHHhcCC-CCEEEEeecCC-CC---Ce--EEEECHHHHHHHHHHHHHHCCC----
Confidence 4678999987522 1225677787777 46666664211 11 11 2233332 22233 3345564
Q ss_pred ceeeeecCCCCCHHHHHHHHHHHHHHHHHHHhCCceeeecceecCCCCCCHHHHHHHHHHHHHH----------------
Q 021993 183 WRTVVSIPCGPSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDGDHPIERTLEVAEKVWSE---------------- 246 (304)
Q Consensus 183 WRsVi~i~~~Ps~~aI~~na~~LAryAaicQ~~GLVPIVEPEVl~dg~h~ie~c~~Vte~vL~~---------------- 246 (304)
|.+.-+...+... ...-+.-|-..++++|+- ..++++...++.+.+..++.+++.|..
T Consensus 179 -~~I~~i~~~~~~~----~~~R~~Gf~~al~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~ 252 (339)
T 3h5o_A 179 -RRIGFLGAQLDER----VMKRLDGYRAALDAADCR-DAGLEWLDPQPSSMQMGADMLDRALAERPDCDALFCCNDDLAI 252 (339)
T ss_dssp -CSEEEEEESCCHH----HHHHHHHHHHHHHHTTCC-CGGGEEEECSCCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHH
T ss_pred -CeEEEEeCCCCcc----HHHHHHHHHHHHHHCCCC-CCChheEecCCCCHHHHHHHHHHHHcCCCCCcEEEECChHHHH
Confidence 3333343222221 123455577778999982 234455667888999988888887754
Q ss_pred -HHHHHHhCCccccccc--------ccccccCCCCCCCCCCChHHHHHHHHHHhcc
Q 021993 247 -VFFYLAENNVVLEGIL--------LKPSMVTPGAEHKEKASPETIAKYTLTMLKR 293 (304)
Q Consensus 247 -vf~aL~~~~V~LEG~l--------LKpnMV~pG~~~~~~~~~eeVA~~Tv~~L~r 293 (304)
++++|+++|+...+-+ --..+..|... +-...+++++...++.|.+
T Consensus 253 g~~~al~~~G~~vP~disvvgfD~~~~~~~~~p~lt-tv~~~~~~~g~~Av~~L~~ 307 (339)
T 3h5o_A 253 GALARSQQLGIAVPERLAIAGFNDLQPAAWCTPPLT-TVATPRRDIGVHAAKALLQ 307 (339)
T ss_dssp HHHHHHHHTTCCTTTTCEEECSBCCGGGTTSSSCCB-EEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCEEEEEECCHHHHhccCCCce-EEEeCHHHHHHHHHHHHHH
Confidence 6889999987654321 11233445543 3466789999999988864
No 14
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=27.40 E-value=2.8e+02 Score=23.39 Aligned_cols=163 Identities=13% Similarity=0.124 Sum_probs=95.6
Q ss_pred CceeEEeeccccccccccCCcchHHHHHhCCccceeecCCCcccCCCCCCCCccCChhHH--HHHHH-HHhhcCCccccc
Q 021993 107 DYISGAILFEETLYQSTTDGKKFVDCLREEKIVPGIKVDKGLVPLPGSNNESWCQGLDGL--ASRST-EYYKQGARFAKW 183 (304)
Q Consensus 107 ~~IsGvILfeETl~q~~~dG~~~~~~L~~kGIvPGIKVDkGl~~l~g~~ge~~t~GLD~L--~~R~~-~y~~~Ga~FaKW 183 (304)
..+-|+|++.-... .+..+.|.++| +|-|=+|...... ....-+.|+- ...+. ...+.|.+
T Consensus 64 ~~vdGiIi~~~~~~------~~~~~~l~~~~-iPvV~~~~~~~~~-----~~~~V~~D~~~~~~~a~~~L~~~G~~---- 127 (294)
T 3qk7_A 64 RRVDALIVAHTQPE------DFRLQYLQKQN-FPFLALGRSHLPK-----PYAWFDFDNHAGASLAVKRLLELGHQ---- 127 (294)
T ss_dssp TCCSEEEECSCCSS------CHHHHHHHHTT-CCEEEESCCCCSS-----CCEEEEECHHHHHHHHHHHHHHTTCC----
T ss_pred CCCCEEEEeCCCCC------hHHHHHHHhCC-CCEEEECCCCCCC-----CCCEEEcChHHHHHHHHHHHHHCCCc----
Confidence 46889998754331 15667777777 5778787653211 1112223322 22233 33445643
Q ss_pred eeeeecCCCCCHHHHHHHHHHHHHHHHHHHhCCceeeecceecCCCCCCHHHHHHHHHHHHH-----------------H
Q 021993 184 RTVVSIPCGPSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDGDHPIERTLEVAEKVWS-----------------E 246 (304)
Q Consensus 184 RsVi~i~~~Ps~~aI~~na~~LAryAaicQ~~GLVPIVEPEVl~dg~h~ie~c~~Vte~vL~-----------------~ 246 (304)
.+.-+.+.+.... ...-+.-|-..++++|+-+ +++....++.+.+..++.+++.|. .
T Consensus 128 -~I~~i~~~~~~~~---~~~R~~Gf~~al~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g 201 (294)
T 3qk7_A 128 -RIAFVSTDARISY---VDQRLQGYVQTMSEAGLMP--LAGYLQKADPTRPGGYLAASRLLALEVPPTAIITDCNMLGDG 201 (294)
T ss_dssp -CEEEEEESSCCHH---HHHHHHHHHHHHHTTTCCC--CTTCEEEECSSHHHHHHHHHHHHHSSSCCSEEEESSHHHHHH
T ss_pred -eEEEEeCCcccch---HHHHHHHHHHHHHHCCCCC--ChhHeecCCCCHHHHHHHHHHHHcCCCCCcEEEECCHHHHHH
Confidence 3444432222221 2234566667789999732 344445678888888888887775 4
Q ss_pred HHHHHHhCCccccc---------ccccccccCCCCCCCCCCCh-HHHHHHHHHHhcc
Q 021993 247 VFFYLAENNVVLEG---------ILLKPSMVTPGAEHKEKASP-ETIAKYTLTMLKR 293 (304)
Q Consensus 247 vf~aL~~~~V~LEG---------~lLKpnMV~pG~~~~~~~~~-eeVA~~Tv~~L~r 293 (304)
++++|+++|+...+ +-+ ..+..|+.. +-...+ ++++...++.|.+
T Consensus 202 ~~~al~~~G~~vP~di~vig~D~~~~-~~~~~p~lt-tv~~~~~~~~g~~av~~L~~ 256 (294)
T 3qk7_A 202 VASALDKAGLLGGEGISLIAYDGLPD-DSLLDIAVT-PIVQNTRTSVGKQIASMICD 256 (294)
T ss_dssp HHHHHHHTTCSSTTSCEEEEETCSCT-TCSCCSCCE-EEECCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCceEEEeecCccH-HhhcCCCce-eEecCcHHHHHHHHHHHHHH
Confidence 78899999986432 222 445556654 346678 7999999988864
No 15
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=26.18 E-value=71 Score=25.99 Aligned_cols=65 Identities=14% Similarity=0.208 Sum_probs=45.5
Q ss_pred cchHHHHHHHHHHhcCCCCceEeecCCCcchHHHhhhcCCCCchhh------h----hhhhhhhccCCCCCCceeEEeec
Q 021993 46 GAYTEELVKTAKTIASPGRGILAIDESNATCGKRLASIGLDNTETN------R----QAYRQLLLTTPGLGDYISGAILF 115 (304)
Q Consensus 46 ~~~~~eL~~tA~~i~a~GKGIlA~DES~gt~~Krl~~iGvente~n------r----r~yR~ll~ttp~~~~~IsGvILf 115 (304)
...++++...|+++..-|--|.| ++.+.+.|+..||+-+.-+ | ...+++|- +..|.-||-+
T Consensus 33 d~dK~~l~~~a~~l~~lGf~i~A----T~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~-----~g~i~lVInt 103 (143)
T 2yvq_A 33 QSFRPRFLGVAEQLHNEGFKLFA----TEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIR-----DGSIDLVINL 103 (143)
T ss_dssp GGGHHHHHHHHHHHHTTTCEEEE----EHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHH-----TTSCCEEEEC
T ss_pred ccchHHHHHHHHHHHHCCCEEEE----CchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHH-----CCCceEEEEC
Confidence 45788999999999997777887 4567899999999866522 2 33444331 4567777776
Q ss_pred cccc
Q 021993 116 EETL 119 (304)
Q Consensus 116 eETl 119 (304)
.+..
T Consensus 104 ~~~~ 107 (143)
T 2yvq_A 104 PNNN 107 (143)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6554
No 16
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*
Probab=25.82 E-value=3.2e+02 Score=24.10 Aligned_cols=102 Identities=18% Similarity=0.079 Sum_probs=61.6
Q ss_pred cCCcchHHHHHh----CC--ccceeecCCCcccCCCCCCCCccCChhHHHHHHHHHhhcCCccccceeeeecC-CCCCHH
Q 021993 124 TDGKKFVDCLRE----EK--IVPGIKVDKGLVPLPGSNNESWCQGLDGLASRSTEYYKQGARFAKWRTVVSIP-CGPSAL 196 (304)
Q Consensus 124 ~dG~~~~~~L~~----kG--IvPGIKVDkGl~~l~g~~ge~~t~GLD~L~~R~~~y~~~Ga~FaKWRsVi~i~-~~Ps~~ 196 (304)
.|.....+.|.+ .| +=.-||||.|-.+-- -|-.+ +.+.+|.+++.+ +..=+++-+..+. ..+...
T Consensus 104 Vds~~~a~~l~~~a~~~~~~~~V~lqVntG~e~~R--~G~~~-ee~~~l~~~i~~-----~~~l~l~Glmt~~~~~~d~~ 175 (245)
T 3sy1_A 104 IDRLRIATRLNDQRPAELPPLNVLIQINISDENSK--SGIQL-AELDELAAAVAE-----LPRLRLRGLSAIPAPESEYV 175 (245)
T ss_dssp ECCHHHHHHHHHHSCTTSCCEEEEEEBCCSCTTCC--SSBCG-GGHHHHHHHHTT-----CTTEEEEEEECCCCCCSCHH
T ss_pred cCCHHHHHHHHHHHHHcCCCceEEEEEECCCCcCC--cCCCH-HHHHHHHHHHHc-----CCCCeEEEEEEeCCCCCCHH
Confidence 455555555532 23 345789999865432 24332 345666665543 3445778888873 445566
Q ss_pred HHHHHHHHHHHHHHHHHhCCceeeecceecCCCCCCHHHH
Q 021993 197 AVKEAAWGLARYAAISQDNGLVPIVEPEILLDGDHPIERT 236 (304)
Q Consensus 197 aI~~na~~LAryAaicQ~~GLVPIVEPEVl~dg~h~ie~c 236 (304)
.+.+.-..|.....-.++.|. + -+++.|=+.+|.+.+
T Consensus 176 ~~~~~f~~l~~l~~~l~~~~~-~--~~~LSmGmS~d~~~A 212 (245)
T 3sy1_A 176 RQFEVARQMAVAFAGLKTRYP-H--IDTLALGQSDDMEAA 212 (245)
T ss_dssp HHHHHHHHHHHHHHHHHTTST-T--CCEEECCCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCC-C--CCEEeccCcHhHHHH
Confidence 666666666666655666664 3 367888889998774
No 17
>1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} SCOP: a.4.5.20
Probab=24.73 E-value=42 Score=25.46 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhCCceee
Q 021993 202 AWGLARYAAISQDNGLVPI 220 (304)
Q Consensus 202 a~~LAryAaicQ~~GLVPI 220 (304)
+...++|...|+++|+-|+
T Consensus 20 ~~vY~~Y~~~C~~~~~~pl 38 (76)
T 1dp7_P 20 STLYNHYLLHSQEQKLEPV 38 (76)
T ss_dssp HHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhcCCccC
Confidence 5678999999999998773
No 18
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=24.47 E-value=63 Score=27.38 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=57.2
Q ss_pred cchHHHHHHHHHHhcCC--CCceEeecCCCcchHHHhhh-cCCCCchh------hhhhhhhhhccCCCCCCceeEEeecc
Q 021993 46 GAYTEELVKTAKTIASP--GRGILAIDESNATCGKRLAS-IGLDNTET------NRQAYRQLLLTTPGLGDYISGAILFE 116 (304)
Q Consensus 46 ~~~~~eL~~tA~~i~a~--GKGIlA~DES~gt~~Krl~~-iGvente~------nrr~yR~ll~ttp~~~~~IsGvILfe 116 (304)
...++++...|+++..- |-.|.| +++|++.|+. -|++-+.- .|...-++|- +..|.-||-|.
T Consensus 20 D~dK~~~v~~ak~~~~ll~Gf~l~A----T~gTa~~L~e~~Gl~v~~v~k~~eGG~p~I~d~I~-----~geIdlVInt~ 90 (152)
T 1b93_A 20 DHCKQMLMSWVERHQPLLEQHVLYA----TGTTGNLISRATGMNVNAMLSGPMGGDQQVGALIS-----EGKIDVLIFFW 90 (152)
T ss_dssp GGGHHHHHHHHHHTHHHHTTSEEEE----ETTHHHHHHHHHCCCCEEECCGGGTHHHHHHHHHH-----TTCCCEEEEEC
T ss_pred hhhHHHHHHHHHHHHHHhCCCEEEE----ccHHHHHHHHHhCceeEEEEecCCCCCchHHHHHH-----CCCccEEEEcC
Confidence 56789999999999997 888998 8999999999 99986543 2333333332 57799999998
Q ss_pred ccc-ccc-ccCCcchHHHHHhCC
Q 021993 117 ETL-YQS-TTDGKKFVDCLREEK 137 (304)
Q Consensus 117 ETl-~q~-~~dG~~~~~~L~~kG 137 (304)
+-| .|. ..||..+-..--..+
T Consensus 91 ~pl~~~~h~~D~~~IrR~A~~~~ 113 (152)
T 1b93_A 91 DPLNAVPHDPDVKALLRLATVWN 113 (152)
T ss_dssp CTTSCCTTHHHHHHHHHHHHHTT
T ss_pred CcccCCcccccHHHHHHHHHHcC
Confidence 832 344 455544433333344
No 19
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=24.35 E-value=3.2e+02 Score=22.98 Aligned_cols=162 Identities=13% Similarity=0.092 Sum_probs=95.5
Q ss_pred CCceeEEeeccccccccccCCcchHHHHHhCCccceeecCCCcccCCCCCCCCccCChhHH--HHHHH-HHhhcCCcccc
Q 021993 106 GDYISGAILFEETLYQSTTDGKKFVDCLREEKIVPGIKVDKGLVPLPGSNNESWCQGLDGL--ASRST-EYYKQGARFAK 182 (304)
Q Consensus 106 ~~~IsGvILfeETl~q~~~dG~~~~~~L~~kGIvPGIKVDkGl~~l~g~~ge~~t~GLD~L--~~R~~-~y~~~Ga~FaK 182 (304)
...+-|+|++.-... .+..+.+++ | +|.|=+|...... ....-+.|+- ...+. ...+.|.+
T Consensus 64 ~~~vdgiIi~~~~~~------~~~~~~~~~-~-iPvV~i~~~~~~~-----~~~~V~~D~~~~~~~a~~~L~~~G~~--- 127 (289)
T 3k9c_A 64 RERCEAAILLGTRFD------TDELGALAD-R-VPALVVARASGLP-----GVGAVRGDDVAGITLAVDHLTELGHR--- 127 (289)
T ss_dssp TTTEEEEEEETCCCC------HHHHHHHHT-T-SCEEEESSCCSST-----TSEEEEECHHHHHHHHHHHHHHTTCC---
T ss_pred hCCCCEEEEECCCCC------HHHHHHHHc-C-CCEEEEcCCCCCC-----CCCEEEeChHHHHHHHHHHHHHCCCC---
Confidence 467999999754331 145566655 5 6888888654311 1122223332 22333 33455643
Q ss_pred ceeeeecCCCCCHHHHHHHHHHHHHHHHHHHhCCceeeecceecCCCCCCHHHHHHHHHHHHH-----------------
Q 021993 183 WRTVVSIPCGPSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDGDHPIERTLEVAEKVWS----------------- 245 (304)
Q Consensus 183 WRsVi~i~~~Ps~~aI~~na~~LAryAaicQ~~GLVPIVEPEVl~dg~h~ie~c~~Vte~vL~----------------- 245 (304)
.+.-+.+.+.. ....-+.-|-..++++|+-.. +++ ..++.+.+..++.+++.|.
T Consensus 128 --~I~~i~~~~~~----~~~~R~~Gf~~al~~~g~~~~--~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~ 198 (289)
T 3k9c_A 128 --NIAHIDGADAP----GGADRRAGFLAAMDRHGLSAS--ATV-VTGGTTETEGAEGMHTLLEMPTPPTAVVAFNDRCAT 198 (289)
T ss_dssp --SEEEECCTTST----THHHHHHHHHHHHHHTTCGGG--EEE-ECCCSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHH
T ss_pred --cEEEEeCCCCc----cHHHHHHHHHHHHHHCCCCCC--ccE-EECCCCHHHHHHHHHHHHcCCCCCCEEEECChHHHH
Confidence 44444433322 223445556667899997432 233 4688899999988888775
Q ss_pred HHHHHHHhCCccccccc--------ccccccCCCCCCCCCCChHHHHHHHHHHhcc
Q 021993 246 EVFFYLAENNVVLEGIL--------LKPSMVTPGAEHKEKASPETIAKYTLTMLKR 293 (304)
Q Consensus 246 ~vf~aL~~~~V~LEG~l--------LKpnMV~pG~~~~~~~~~eeVA~~Tv~~L~r 293 (304)
.++++|+++|+...+-+ --..+..|+.. +....+++++...++.|.+
T Consensus 199 g~~~al~~~g~~vP~di~vig~D~~~~~~~~~p~lt-tv~~~~~~~g~~a~~~l~~ 253 (289)
T 3k9c_A 199 GVLDLLVRSGRDVPADISVVGYDDSRLARIPHVQMT-TISQDATHMAEAAVDGALA 253 (289)
T ss_dssp HHHHHHHHTTCCTTTTCEEEEEECCTTTTCTTTCCE-EEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCceEEEEECCHHHHhcCCCCcc-eEecCHHHHHHHHHHHHHH
Confidence 57899999987643211 11234455543 4566889999999988864
No 20
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=24.28 E-value=1.9e+02 Score=24.00 Aligned_cols=167 Identities=13% Similarity=0.067 Sum_probs=90.9
Q ss_pred CceeEEeeccccccccccCCcchHHHHHhCCccceeecCCCcccCCCCCCCCccCChhHH--HHHHHHHh-h--cCCccc
Q 021993 107 DYISGAILFEETLYQSTTDGKKFVDCLREEKIVPGIKVDKGLVPLPGSNNESWCQGLDGL--ASRSTEYY-K--QGARFA 181 (304)
Q Consensus 107 ~~IsGvILfeETl~q~~~dG~~~~~~L~~kGIvPGIKVDkGl~~l~g~~ge~~t~GLD~L--~~R~~~y~-~--~Ga~Fa 181 (304)
+.+-|+|++.-.- ....+..+.+.++| +|-|=+|.... +....-+.|+- ...+.+|- + .|.
T Consensus 60 ~~vdgiIi~~~~~----~~~~~~~~~~~~~~-iPvV~~~~~~~------~~~~~V~~D~~~~g~~~~~~l~~~~~g~--- 125 (291)
T 3l49_A 60 QKPDAIIEQLGNL----DVLNPWLQKINDAG-IPLFTVDTATP------HAINNTTSNNYSIGAELALQMVADLGGK--- 125 (291)
T ss_dssp HCCSEEEEESSCH----HHHHHHHHHHHHTT-CCEEEESCCCT------TCSEEEEECHHHHHHHHHHHHHHHHTTC---
T ss_pred cCCCEEEEeCCCh----hhhHHHHHHHHHCC-CcEEEecCCCC------CcCceEecChHHHHHHHHHHHHHHcCCC---
Confidence 4578888763221 01123456666777 56777776431 11222333332 23333333 2 353
Q ss_pred cceeeeecCCCCCHHHHHHHHHHHHHHHHHHHhCCceeeecceecCCCCCCHHHHHHHHHHHHHH---------------
Q 021993 182 KWRTVVSIPCGPSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDGDHPIERTLEVAEKVWSE--------------- 246 (304)
Q Consensus 182 KWRsVi~i~~~Ps~~aI~~na~~LAryAaicQ~~GLVPIVEPEVl~dg~h~ie~c~~Vte~vL~~--------------- 246 (304)
|.+.-+.+.++.... ..-+.-|-..++++|=++|++++....++.+.+.+++.+++.|..
T Consensus 126 --~~i~~i~~~~~~~~~---~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~d 200 (291)
T 3l49_A 126 --GNVLVFNGFYSVPVC---KIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAIWACWD 200 (291)
T ss_dssp --EEEEEECSCTTSHHH---HHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCEEEESSH
T ss_pred --ceEEEEeCCCCCchH---HHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCCcCEEEECCC
Confidence 445555443333222 223444556678886568999998888899999888888877653
Q ss_pred -----HHHHHHhCCcc-c-----cccccc----ccccCCCCCCCCCCChHHHHHHHHHHhcc
Q 021993 247 -----VFFYLAENNVV-L-----EGILLK----PSMVTPGAEHKEKASPETIAKYTLTMLKR 293 (304)
Q Consensus 247 -----vf~aL~~~~V~-L-----EG~lLK----pnMV~pG~~~~~~~~~eeVA~~Tv~~L~r 293 (304)
++++|+++|+. + .+.-.- -+...|... +....+++++...++.|.+
T Consensus 201 ~~a~g~~~al~~~g~~di~vvg~d~~~~~~~~i~~~~~p~lt-tv~~~~~~~g~~av~~l~~ 261 (291)
T 3l49_A 201 VPMIGATQALQAAGRTDIRTYGVDGSPEFVEMVADPESPAGA-VAAQQPSEIGKLAVQNVAR 261 (291)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEEEECCHHHHHHHHCTTSCEEE-EEECCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHcCCCCeEEEEecCCHHHHHHHHCCCCCeEE-EEecCHHHHHHHHHHHHHH
Confidence 46778887763 1 111110 011122211 2345678888888877654
No 21
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=24.27 E-value=2.1e+02 Score=26.08 Aligned_cols=81 Identities=20% Similarity=0.229 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhCCceee------ecceecCCCCCCHHHHHHHHHHHHHHHHHHHHhCCccccccccccc
Q 021993 193 PSALAVKEAAWGLARYAAISQDNGLVPI------VEPEILLDGDHPIERTLEVAEKVWSEVFFYLAENNVVLEGILLKPS 266 (304)
Q Consensus 193 Ps~~aI~~na~~LAryAaicQ~~GLVPI------VEPEVl~dg~h~ie~c~~Vte~vL~~vf~aL~~~~V~LEG~lLKpn 266 (304)
-|...+.+++....+| +.+.|+-.- +-+| .+|.+|++...++.+++ .+.|++- .-|
T Consensus 115 ~s~~e~l~~~~~~v~~---ak~~G~~v~~~i~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~Ga~~--i~l--- 176 (307)
T 1ydo_A 115 KSTSESLHILKQVNND---AQKANLTTRAYLSTVFGCP--YEKDVPIEQVIRLSEAL--------FEFGISE--LSL--- 176 (307)
T ss_dssp SCHHHHHHHHHHHHHH---HHHTTCEEEEEEECTTCBT--TTBCCCHHHHHHHHHHH--------HHHTCSC--EEE---
T ss_pred CCHHHHHHHHHHHHHH---HHHCCCEEEEEEEEEecCC--cCCCCCHHHHHHHHHHH--------HhcCCCE--EEE---
Confidence 4666777777777777 578998532 2233 24667888766665554 3335431 111
Q ss_pred ccCCCCCCCCCCChHHHHHHHHHHhccCCCC
Q 021993 267 MVTPGAEHKEKASPETIAKYTLTMLKRRVPP 297 (304)
Q Consensus 267 MV~pG~~~~~~~~~eeVA~~Tv~~L~rtvP~ 297 (304)
+ |.....+|++|.+ .++.|++.+|.
T Consensus 177 ---~--DT~G~~~P~~v~~-lv~~l~~~~~~ 201 (307)
T 1ydo_A 177 ---G--DTIGAANPAQVET-VLEALLARFPA 201 (307)
T ss_dssp ---E--CSSCCCCHHHHHH-HHHHHHTTSCG
T ss_pred ---c--CCCCCcCHHHHHH-HHHHHHHhCCC
Confidence 1 3334578999887 47888888873
No 22
>4do4_A Alpha-N-acetylgalactosaminidase; pharmacological chaperone, (beta/alpha)8 barrel, glycosidase carbohydrate-binding protein, glycoprotein, lysosome; HET: NAG BMA MAN DJN CIT FUC; 1.40A {Homo sapiens} PDB: 3h54_A* 3h53_A* 3igu_A* 3h55_A* 4do5_A* 4do6_A* 1ktb_A* 1ktc_A*
Probab=23.47 E-value=83 Score=28.89 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=41.5
Q ss_pred cchHHHHHhCCccceeecCCCcccCCCCCCCCccCChhHHHHHHHHHhhcCCcccccee
Q 021993 127 KKFVDCLREEKIVPGIKVDKGLVPLPGSNNESWCQGLDGLASRSTEYYKQGARFAKWRT 185 (304)
Q Consensus 127 ~~~~~~L~~kGIvPGIKVDkGl~~l~g~~ge~~t~GLD~L~~R~~~y~~~Ga~FaKWRs 185 (304)
++++++++++|+-+||=.|-|.....|.++- .++-...-++.|.+-|..|=|+-.
T Consensus 86 k~ladyih~~Glk~Giy~~~~~~~c~g~~~~----~~~~~~~da~~~a~wGvdylK~D~ 140 (400)
T 4do4_A 86 PFLADYVHSLGLKLGIYADMGNFTCMGYPGT----TLDKVVQDAQTFAEWKVDMLKLDG 140 (400)
T ss_dssp HHHHHHHHHTTCEEEEEEEBSSBCTTSCBCB----CGGGHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHCCceEEEecCCCCcccCCCCch----hHhHHHHHHHHHHHhCCceEeecc
Confidence 4789999999999999999998876665431 245455556778888888877653
No 23
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=23.02 E-value=93 Score=27.19 Aligned_cols=82 Identities=17% Similarity=0.172 Sum_probs=58.1
Q ss_pred cchHHHHHHHHHHhcCC--CCceEeecCCCcchHHHhhh-cCCCCchhh------hhhhhhhhccCCCCCCceeEEeecc
Q 021993 46 GAYTEELVKTAKTIASP--GRGILAIDESNATCGKRLAS-IGLDNTETN------RQAYRQLLLTTPGLGDYISGAILFE 116 (304)
Q Consensus 46 ~~~~~eL~~tA~~i~a~--GKGIlA~DES~gt~~Krl~~-iGvente~n------rr~yR~ll~ttp~~~~~IsGvILfe 116 (304)
...++++...|+++..- |-.|.| |++|++.|+. -||+-+.-+ |...-++|- +..|.-||-|.
T Consensus 36 D~dK~~lv~~ak~~~~lL~Gf~L~A----T~gTa~~L~e~~Gl~v~~v~k~~eGG~pqI~d~I~-----~geIdlVInt~ 106 (178)
T 1vmd_A 36 DRRKRDLLEWVSFNLGTLSKHELYA----TGTTGALLQEKLGLKVHRLKSGPLGGDQQIGAMIA-----EGKIDVLIFFW 106 (178)
T ss_dssp GGGHHHHHHHHHHSHHHHTTSEEEE----CHHHHHHHHHHHCCCCEECSCGGGTHHHHHHHHHH-----TTSCCEEEEEC
T ss_pred hhhHHHHHHHHHHHHHHhcCCEEEE----chHHHHHHHHHhCceeEEEeecCCCCCchHHHHHH-----CCCccEEEEcc
Confidence 56789999999999997 888998 8999999999 999865432 333333332 57789999998
Q ss_pred c--ccccc-ccCCcchHHHHHhCC
Q 021993 117 E--TLYQS-TTDGKKFVDCLREEK 137 (304)
Q Consensus 117 E--Tl~q~-~~dG~~~~~~L~~kG 137 (304)
+ + .|. ..||..+-..--..+
T Consensus 107 dPl~-~~~h~~D~~~IRR~A~~~~ 129 (178)
T 1vmd_A 107 DPLE-PQAHDVDVKALIRIATVYN 129 (178)
T ss_dssp CSSS-CCTTSCCHHHHHHHHHHTT
T ss_pred CccC-CCcccccHHHHHHHHHHcC
Confidence 8 5 454 456654444333444
No 24
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=22.74 E-value=3.7e+02 Score=23.11 Aligned_cols=164 Identities=16% Similarity=0.247 Sum_probs=93.3
Q ss_pred CCceeEEeeccccccccccCCcchHHHHHhCCccceeecCCCcccCCCCCCCCccCChhHH--HHHHHHH-hhcCCcccc
Q 021993 106 GDYISGAILFEETLYQSTTDGKKFVDCLREEKIVPGIKVDKGLVPLPGSNNESWCQGLDGL--ASRSTEY-YKQGARFAK 182 (304)
Q Consensus 106 ~~~IsGvILfeETl~q~~~dG~~~~~~L~~kGIvPGIKVDkGl~~l~g~~ge~~t~GLD~L--~~R~~~y-~~~Ga~FaK 182 (304)
.+.+-|+|++.-... .+..+.|.+.| +|.+=+|..... . ....-+.|+- ...+.+| .+.|.
T Consensus 114 ~~~vdgiI~~~~~~~------~~~~~~l~~~~-iPvV~~~~~~~~-~----~~~~V~~D~~~~~~~a~~~L~~~G~---- 177 (332)
T 2hsg_A 114 GKQVDGIIFMSGNVT------EEHVEELKKSP-VPVVLAASIEST-N----QIPSVTIDYEQAAFDAVQSLIDSGH---- 177 (332)
T ss_dssp CCSSCCEEECCSSCC------HHHHHHHTTSS-SCEEEESCCCSC-T----TSCEEEECHHHHHHHHHHHHHTTTC----
T ss_pred hCCCcEEEEecCCCC------HHHHHHHHhCC-CCEEEEccccCC-C----CCCEEEEChHHHHHHHHHHHHHCCC----
Confidence 467889998753321 13455666666 577777764321 1 1122233432 2333333 34553
Q ss_pred ceeeeecCCCC-CHHHHHHHHHHHHHHHHHHHhCCceeeecceecCCCCCCHHHHHHHHHHHHH----------------
Q 021993 183 WRTVVSIPCGP-SALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDGDHPIERTLEVAEKVWS---------------- 245 (304)
Q Consensus 183 WRsVi~i~~~P-s~~aI~~na~~LAryAaicQ~~GLVPIVEPEVl~dg~h~ie~c~~Vte~vL~---------------- 245 (304)
|.+.-+.+.+ ..... ..-+.-|-..++++|+ ++ +++....++.+.+..++.+++.|.
T Consensus 178 -~~I~~i~~~~~~~~~~---~~R~~Gf~~al~~~g~-~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A 251 (332)
T 2hsg_A 178 -KNIAFVSGTLEEPINH---AKKVKGYKRALTESGL-PV-RDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMA 251 (332)
T ss_dssp -SCEEEEESCTTSHHHH---TTHHHHHHHHHHTTTC-CC-CGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEEESSHHHH
T ss_pred -CEEEEEeCCcccCccH---HHHHHHHHHHHHHcCC-CC-ChheEEeCCCCHHHHHHHHHHHHcCCCCCeEEEECChHHH
Confidence 4444454333 32221 2334556666889995 32 344445678888888777777664
Q ss_pred -HHHHHHHhCCcccc---------cccccccccCCCCCCCCCCChHHHHHHHHHHhcc
Q 021993 246 -EVFFYLAENNVVLE---------GILLKPSMVTPGAEHKEKASPETIAKYTLTMLKR 293 (304)
Q Consensus 246 -~vf~aL~~~~V~LE---------G~lLKpnMV~pG~~~~~~~~~eeVA~~Tv~~L~r 293 (304)
.++++|+++|+... +.-+ ..+..|+.. +-...+++++...++.|.+
T Consensus 252 ~g~~~al~~~G~~vP~disvvg~D~~~~-~~~~~p~lt-tv~~~~~~~g~~a~~~l~~ 307 (332)
T 2hsg_A 252 LGVIHGAQDRGLNVPNDLEIIGFDNTRL-STMVRPQLT-SVVQPMYDIGAVAMRLLTK 307 (332)
T ss_dssp HHHHHHHHHTTCCHHHHCEEEEESCCGG-GGSSSSCCE-EEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCeEEEEECChHH-HhccCCcee-EEECCHHHHHHHHHHHHHH
Confidence 36789999987532 2222 345556653 4566789999999888754
No 25
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=21.94 E-value=3.5e+02 Score=22.55 Aligned_cols=164 Identities=15% Similarity=0.115 Sum_probs=87.5
Q ss_pred CCceeEEeeccccccccccCCcchHHHHHhCCccceeecCCCcccCCCCCCCCccCChhH--HHHHHHH-HhhcCCcccc
Q 021993 106 GDYISGAILFEETLYQSTTDGKKFVDCLREEKIVPGIKVDKGLVPLPGSNNESWCQGLDG--LASRSTE-YYKQGARFAK 182 (304)
Q Consensus 106 ~~~IsGvILfeETl~q~~~dG~~~~~~L~~kGIvPGIKVDkGl~~l~g~~ge~~t~GLD~--L~~R~~~-y~~~Ga~FaK 182 (304)
++.+-|+|++.-.. ..+..+.|+++| +|.|=+|...... + ...-+.|. -...+.+ ..+.|.
T Consensus 62 ~~~vdgiIi~~~~~------~~~~~~~~~~~~-iPvV~~~~~~~~~----~-~~~V~~D~~~~g~~a~~~L~~~G~---- 125 (291)
T 3egc_A 62 ERRVDGLILAPSEG------EHDYLRTELPKT-FPIVAVNRELRIP----G-CGAVLSENVRGARTAVEYLIARGH---- 125 (291)
T ss_dssp HTTCSEEEECCCSS------CCHHHHHSSCTT-SCEEEESSCCCCT----T-CEEEEECHHHHHHHHHHHHHHTTC----
T ss_pred HCCCCEEEEeCCCC------ChHHHHHhhccC-CCEEEEecccCCC----C-CCEEEECcHHHHHHHHHHHHHcCC----
Confidence 35688999876433 234556666666 5777777654321 1 11122222 2233333 334563
Q ss_pred ceeeeecCCCCCHHHHHHHHHHHHHHHHHHHhCCceeeecceecCCCCCCHHHHHHHHHHHHH-----------------
Q 021993 183 WRTVVSIPCGPSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDGDHPIERTLEVAEKVWS----------------- 245 (304)
Q Consensus 183 WRsVi~i~~~Ps~~aI~~na~~LAryAaicQ~~GLVPIVEPEVl~dg~h~ie~c~~Vte~vL~----------------- 245 (304)
|.+.-+...+... ....-+.-|-..++++|+-+ +++....++.+.+..++.+++.|.
T Consensus 126 -~~i~~i~~~~~~~---~~~~R~~gf~~~l~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~ 199 (291)
T 3egc_A 126 -TRIGAIVGSAGLM---TSRERLKGFRAAMSAAGLPV--RQEWIAAGGVRADNGRDGAIKVLTGADRPTALLTSSHRITE 199 (291)
T ss_dssp -CSEEEECSCTTSH---HHHHHHHHHHHHHHHTTCCC--CGGGEEC------CCHHHHHHHHTC-CCCSEEEESSHHHHH
T ss_pred -CEEEEEeCCCCCc---CHHHHHHHHHHHHHHcCCCC--CHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEEECCcHHHH
Confidence 3455554333222 22334455666688999743 344444566676666666666552
Q ss_pred HHHHHHHhCCccccc---------ccccccccCCCCCCCCCCChHHHHHHHHHHhcc
Q 021993 246 EVFFYLAENNVVLEG---------ILLKPSMVTPGAEHKEKASPETIAKYTLTMLKR 293 (304)
Q Consensus 246 ~vf~aL~~~~V~LEG---------~lLKpnMV~pG~~~~~~~~~eeVA~~Tv~~L~r 293 (304)
.++++|+++|+...+ +-+ .....|+.. +-...+++++...++.|.+
T Consensus 200 g~~~al~~~g~~vP~di~vvg~d~~~~-~~~~~p~lt-tv~~~~~~~g~~av~~l~~ 254 (291)
T 3egc_A 200 GAMQALNVLGLRYGPDVEIVSFDNLPW-MAFLDPPLP-VVEQPTRRIGQEAMRMLIH 254 (291)
T ss_dssp HHHHHHHHHTCCBTTTBEEEEESCCGG-GGGSSSCCC-EEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCceEEEEecCchh-HhhcCCCce-EEEECHHHHHHHHHHHHHH
Confidence 578889998876432 222 334445543 4566899999999988864
Done!