BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021994
         (304 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q3UDW8|HGNAT_MOUSE Heparan-alpha-glucosaminide N-acetyltransferase OS=Mus musculus
           GN=Hgsnat PE=1 SV=2
          Length = 656

 Score =  108 bits (269), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 126/254 (49%), Gaps = 29/254 (11%)

Query: 17  SEPDVSDQQ-EKSHLKTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADF 75
           ++P  +D Q E       RL  +D FRGLA+ LM+ V++ GG +    H+ WNG  +AD 
Sbjct: 242 ADPLSADYQPETRRSSANRLRCVDTFRGLALVLMVFVNYGGGKYWYFKHSSWNGLTVADL 301

Query: 76  VMPFFLFIVGVAIALALKRIPDRA----DAVKKVIFRTLKLLFWGILLQGGFSHAPDELT 131
           V P+F+FI+G +I L++  I  R       + K+++R+  L+  G+++       P+   
Sbjct: 302 VFPWFVFIMGTSIFLSMTSILQRGCSKLKLLGKIVWRSFLLICIGVIIVN-----PNYCL 356

Query: 132 YGVDVRMIRLCGVLQRIALSYLLVSLVEIFT-KDVQDKDQSVGRFSIFRL----YCW-HW 185
             +    +R+ GVLQR+ ++Y +V+++E F  K V   D      S F L      W  W
Sbjct: 357 GPLSWDKVRIPGVLQRLGVTYFVVAVLEFFFWKPV--PDSCTLESSCFSLRDITSSWPQW 414

Query: 186 LMAACVLVVYLALLYGTYVPDWQFTIINKDS-ADYGKVFNVTCGVRAKLNPPCNAVGYID 244
           L    +  ++LAL +   VP      +      D GK  + T G          A GYID
Sbjct: 415 LTILTLESIWLALTFFLPVPGCPTGYLGPGGIGDLGKYPHCTGG----------AAGYID 464

Query: 245 RKVLGINHMYHHPA 258
           R +LG NH+Y HP+
Sbjct: 465 RLLLGDNHLYQHPS 478


>sp|Q68CP4|HGNAT_HUMAN Heparan-alpha-glucosaminide N-acetyltransferase OS=Homo sapiens
           GN=HGSNAT PE=1 SV=2
          Length = 663

 Score =  105 bits (262), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 121/234 (51%), Gaps = 24/234 (10%)

Query: 34  RLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALK 93
           RL S+D FRG+A+ LM+ V++ GG +    HA WNG  +AD V P+F+FI+G +I L++ 
Sbjct: 267 RLRSVDTFRGIALILMVFVNYGGGKYWYFKHASWNGLTVADLVFPWFVFIMGSSIFLSMT 326

Query: 94  RIPDRADA----VKKVIFRTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIA 149
            I  R  +    + K+ +R+  L+  GI++       P+     +    +R+ GVLQR+ 
Sbjct: 327 SILQRGCSKFRLLGKIAWRSFLLICIGIIIVN-----PNYCLGPLSWDKVRIPGVLQRLG 381

Query: 150 LSYLLVSLVE-IFTKDVQDKDQSVGRFSIFR--LYCW-HWLMAACVLVVYLALLYGTYVP 205
           ++Y +V+++E +F K V +   S       R     W  WL+   +  ++L L +   VP
Sbjct: 382 VTYFVVAVLELLFAKPVPEHCASERSCLSLRDITSSWPQWLLILVLEGLWLGLTFLLPVP 441

Query: 206 DWQFTIINKDS-ADYGKVFNVTCGVRAKLNPPCNAVGYIDRKVLGINHMYHHPA 258
                 +      D+GK  N T G          A GYIDR +LG +H+Y HP+
Sbjct: 442 GCPTGYLGPGGIGDFGKYPNCTGG----------AAGYIDRLLLGDDHLYQHPS 485


>sp|A1B0E4|YIDC_PARDP Membrane protein insertase YidC OS=Paracoccus denitrificans (strain
           Pd 1222) GN=yidC PE=3 SV=1
          Length = 635

 Score = 33.1 bits (74), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 65  APWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFRTLKLLFWGILLQGGFS 124
           AP  G  L  F +P    ++GV++ +  K  P   D  +K+IF  +  +F  + + GGF+
Sbjct: 523 APGQGSFLHSFTLPVLAILLGVSMWMQQKLNPAPTDPAQKMIFAWMPWVF--MFMLGGFA 580

Query: 125 HA 126
             
Sbjct: 581 SG 582


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.327    0.142    0.464 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,100,423
Number of Sequences: 539616
Number of extensions: 4407034
Number of successful extensions: 10022
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 10016
Number of HSP's gapped (non-prelim): 6
length of query: 304
length of database: 191,569,459
effective HSP length: 117
effective length of query: 187
effective length of database: 128,434,387
effective search space: 24017230369
effective search space used: 24017230369
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)