Query 021994
Match_columns 304
No_of_seqs 258 out of 1061
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 07:12:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021994.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021994hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4683 Uncharacterized conser 100.0 2.5E-60 5.5E-65 452.0 7.4 283 1-298 108-397 (549)
2 COG4299 Uncharacterized protei 100.0 9.6E-43 2.1E-47 321.7 14.0 195 33-299 6-204 (371)
3 PF07786 DUF1624: Protein of u 99.8 1.3E-18 2.7E-23 157.1 14.1 136 34-199 1-141 (223)
4 COG2311 Predicted membrane pro 99.6 5.6E-15 1.2E-19 144.6 12.8 122 26-169 4-143 (394)
5 COG3503 Predicted membrane pro 99.6 1E-14 2.2E-19 137.5 12.9 136 33-197 14-154 (323)
6 PRK10835 hypothetical protein; 99.3 3.9E-11 8.4E-16 117.3 12.2 103 38-166 1-119 (373)
7 PF10129 OpgC_C: OpgC protein; 98.4 5.4E-06 1.2E-10 81.1 13.2 83 34-120 1-86 (358)
8 COG4645 Uncharacterized protei 97.9 8.1E-05 1.7E-09 72.1 11.0 86 31-120 20-111 (410)
9 PF01757 Acyl_transf_3: Acyltr 97.4 0.0025 5.4E-08 57.1 12.3 84 36-119 2-91 (340)
10 PRK03854 opgC glucans biosynth 97.4 0.00072 1.6E-08 65.6 8.8 90 29-119 3-101 (375)
11 COG3274 Predicted O-acyltransf 95.9 0.097 2.1E-06 50.8 11.2 57 32-88 2-65 (332)
12 COG1835 Predicted acyltransfer 93.2 0.06 1.3E-06 52.5 2.6 66 29-100 9-76 (386)
13 PF05857 TraX: TraX protein; 86.7 14 0.00029 33.4 11.9 66 37-114 2-67 (219)
14 COG3594 NolL Fucose 4-O-acetyl 86.4 0.98 2.1E-05 44.4 4.6 50 32-87 2-54 (343)
15 PHA02980 hypothetical protein; 61.7 75 0.0016 28.1 9.1 55 58-123 32-90 (160)
16 PRK13706 conjugal transfer pil 56.2 1.2E+02 0.0027 28.6 10.0 66 36-112 31-96 (248)
17 COG3619 Predicted membrane pro 52.9 88 0.0019 29.1 8.5 57 64-122 50-106 (226)
18 TIGR02755 TraX_Ftype type-F co 51.8 1.7E+02 0.0038 27.2 10.2 66 37-113 8-73 (224)
19 PF12794 MscS_TM: Mechanosensi 41.6 3.4E+02 0.0074 26.4 11.7 76 78-163 92-176 (340)
20 PF07760 DUF1616: Protein of u 40.5 3.2E+02 0.007 25.8 12.7 77 75-164 29-109 (287)
21 KOG4683 Uncharacterized conser 39.4 22 0.00048 35.7 2.4 28 182-209 280-307 (549)
22 PF03073 TspO_MBR: TspO/MBR fa 39.2 2.1E+02 0.0045 24.2 8.1 56 59-122 26-85 (148)
23 PF11654 DUF2665: Protein of u 32.9 59 0.0013 23.1 3.1 20 78-97 9-28 (47)
24 COG5062 Uncharacterized membra 31.6 92 0.002 31.2 5.2 115 32-164 108-227 (429)
25 PF07331 TctB: Tripartite tric 31.3 2.9E+02 0.0063 22.5 10.8 17 189-205 123-139 (141)
26 PF07457 DUF1516: Protein of u 29.2 3.3E+02 0.007 22.4 9.9 19 150-168 71-89 (110)
27 COG4763 Predicted membrane pro 28.8 17 0.00036 35.7 -0.3 61 28-91 15-79 (388)
28 PRK13882 conjugal transfer pro 26.6 5.2E+02 0.011 23.9 10.1 72 37-115 10-82 (232)
29 PRK12567 putative monovalent c 25.4 3.6E+02 0.0079 24.9 7.8 27 138-164 51-77 (218)
30 PRK10263 DNA translocase FtsK; 23.6 1.3E+03 0.027 27.4 14.3 8 141-148 142-149 (1355)
31 PF06645 SPC12: Microsomal sig 22.6 3.1E+02 0.0067 21.0 5.8 12 198-209 47-58 (76)
No 1
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.5e-60 Score=451.96 Aligned_cols=283 Identities=43% Similarity=0.754 Sum_probs=233.9
Q ss_pred CcccccccccCCCccccCCCcc----hhhcccccccchhHHHHHHHHHHHHHHHHHhccCCCccccccCCCCchhhHHHH
Q 021994 1 MSEIKAETTHHHPLIISEPDVS----DQQEKSHLKTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFV 76 (304)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Ri~sLD~lRGlAI~~MIlVN~~g~~~~~l~ha~W~G~t~~Dlv 76 (304)
|.|||.|..|.+..- |+.+. +..++.+.+++|+.|||++||+++++||+||..|+.||+.+|++|||++++|.|
T Consensus 108 ~~~ik~~~~~d~~~~--E~k~~~ss~~~~rsla~~r~RL~SLD~FRGltValMIlVdd~GG~~p~I~HapWnG~~LADfV 185 (549)
T KOG4683|consen 108 ALKIKSCAWRDYRYD--EAKAAASSIGEARSLATQRKRLRSLDTFRGLTVALMILVDDGGGGYPWIEHAPWNGLHLADFV 185 (549)
T ss_pred HHHHhhccchhhhhc--cchhhhhhhhhhhhcCCCchhhhhhhhhcCceEEEEEEEecCCCCchhhhcCCcCCccHHHHH
Confidence 347787776655443 33222 123445566789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccccccceeecchHHHHHHHHHHHH
Q 021994 77 MPFFLFIVGVAIALALKRIPDRADAVKKVIFRTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVS 156 (304)
Q Consensus 77 fPlFlFl~Gvsi~ls~~r~~~~~~~~~ki~rR~l~Lf~lGlll~~~~~~~~~~~t~~~~~~~~r~~GVLqrIgl~Y~v~a 156 (304)
+|+|+||+|+|+++|+++...|....||..-|..+|++.|++++..+.++.+++|+..|.+++|++|||||+|++|+++|
T Consensus 186 mPfFLfIvGVsials~K~~s~rf~a~rKa~~R~cklllwgLflqGgf~h~~~nLTygidve~lR~mGILQr~~~ayLVvA 265 (549)
T KOG4683|consen 186 MPFFLFIVGVSIALSVKSQSSRFSATRKAKARICKLLLWGLFLQGGFLHSMSNLTYGIDVEQLRIMGILQRFGVAYLVVA 265 (549)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhcccCcccccCCccHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999988888899999999999999999999999998889999999999999999999999999999
Q ss_pred HHHHHhccccccccccc--chhhhhhhHHHHHHHHHHHHHHHHHHHhcccCCCcccccCCCCCCcCccccccccccccC-
Q 021994 157 LVEIFTKDVQDKDQSVG--RFSIFRLYCWHWLMAACVLVVYLALLYGTYVPDWQFTIINKDSADYGKVFNVTCGVRAKL- 233 (304)
Q Consensus 157 ll~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~lL~~Y~~ll~~l~vPg~~~~~~~~g~~~~~~~~~~~~g~~g~~- 233 (304)
++..+..+. ..++++. .+....-......+-..++.-|..++|++-+|+||.+|++|+| .++-.
T Consensus 266 i~~~~~~~~-~~~~~S~~R~V~~~~L~~~~~~~~~~~V~~~~~~~~~~~~~~~~r~~~~~~G------------~~~~~~ 332 (549)
T KOG4683|consen 266 ILHTLCCRP-ISPQRSWQRAVHDVCLFSGELAVLLALVATYLGLTFGLRVPGCPRGYLGPGG------------KHDYNA 332 (549)
T ss_pred HHhhhccCC-CccccchhhhhhHHHHHHHHHHHHHHhhhhhhceecccccCCCCcccccCCc------------ccccCC
Confidence 998776552 1222221 1222111222344445556666677888889999999888765 22333
Q ss_pred CCCCChhhhhhhhhcCCCCcccCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 021994 234 NPPCNAVGYIDRKVLGINHMYHHPAWRRSKACTQDSPFEGPLRKDAPSWCHAPFEPEGLLRFVGH 298 (304)
Q Consensus 234 ~~~~N~a~~IDr~iLG~~HlY~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~fDPEGlLstl~~ 298 (304)
.|.||++||.||++||.+|||++|+++|+|+|+.|+|++|++|+|+||||..|||||||||+|-|
T Consensus 333 ~P~CnAvGy~DrqvLGi~HiY~hP~~~r~k~cs~n~P~nG~l~~DAPSWCqapFdPEGilssi~a 397 (549)
T KOG4683|consen 333 HPKCNAVGYADRQVLGIAHIYQHPTAKRVKDCSINYPNNGPLPPDAPSWCQAPFDPEGILSSILA 397 (549)
T ss_pred CCCccchhhhHHhhhhhHHHhcCchHHHhhhcccCCCCCCCCCCCCchhhcCCCChHHHHHHHHH
Confidence 36699999999999999999999999999999999999999999999999999999999999864
No 2
>COG4299 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=9.6e-43 Score=321.72 Aligned_cols=195 Identities=36% Similarity=0.537 Sum_probs=168.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhccC---CCccccccCCCCchhhHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHH
Q 021994 33 QRLASLDIFRGLAVALMILVDHAG---GDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFRT 109 (304)
Q Consensus 33 ~Ri~sLD~lRGlAI~~MIlVN~~g---~~~~~l~ha~W~G~t~~DlvfPlFlFl~Gvsi~ls~~r~~~~~~~~~ki~rR~ 109 (304)
-|+.|+|++||+++++||+||+.+ +.|+++.|++|.|+|++|+|||+|+|++|.+|+||.+|..+.+....++.||+
T Consensus 6 ~RltsLDvfRGlTv~lMilVN~ag~gd~~y~qL~HA~w~G~T~tDlVFP~FLF~vG~am~Fs~sk~~~~n~~tw~~~RRa 85 (371)
T COG4299 6 FRLTSLDVFRGLTVLLMILVNNAGLGDSTYRQLSHAHWGGLTLTDLVFPWFLFCVGAAMPFSASKMNKANVTTWPLYRRA 85 (371)
T ss_pred hhhhhHHHHhhhHHHHHHhhcccccccccccccccccccCCCHHHHHHHHHHHHHhhhccccccccCccCCcchHHHHHH
Confidence 699999999999999999999975 37899999999999999999999999999999999998777677779999999
Q ss_pred HHHHHHHHHHhhccCCCCCccccccc-ccceeecchHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhHHHHHHH
Q 021994 110 LKLLFWGILLQGGFSHAPDELTYGVD-VRMIRLCGVLQRIALSYLLVSLVEIFTKDVQDKDQSVGRFSIFRLYCWHWLMA 188 (304)
Q Consensus 110 l~Lf~lGlll~~~~~~~~~~~t~~~~-~~~~r~~GVLqrIgl~Y~v~all~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (304)
..+|++|++++.+ +..++ +.++ .+..|.+||||||++||+++++....+++ |+||+.+
T Consensus 86 a~~f~Lg~Lm~~F-~~~~~---ws~~~~s~tr~mGVLQrIaL~ylfAal~v~~L~~-----------------r~q~~la 144 (371)
T COG4299 86 AERFALGYLMGAF-VTVRD---WSVTSHSLTRGMGVLQRIALAYLFAALLVRQLRG-----------------RWQALLA 144 (371)
T ss_pred HHHHHHHHHhhhc-cccce---eeeeechhhHHHHHHHHHHHHHHHHHHHHHhcCh-----------------HHHHHHH
Confidence 9999999999853 33211 2233 57899999999999999999998877654 4899999
Q ss_pred HHHHHHHHHHHHhcccCCCcccccCCCCCCcCccccccccccccCCCCCChhhhhhhhhcCCCCcccCcccccccccCCC
Q 021994 189 ACVLVVYLALLYGTYVPDWQFTIINKDSADYGKVFNVTCGVRAKLNPPCNAVGYIDRKVLGINHMYHHPAWRRSKACTQD 268 (304)
Q Consensus 189 ~~lL~~Y~~ll~~l~vPg~~~~~~~~g~~~~~~~~~~~~g~~g~~~~~~N~a~~IDr~iLG~~HlY~~p~~~~~~~~~~~ 268 (304)
++++++||+++...|+|+.| ++..+|+..++|+.+.+.||+|.+
T Consensus 145 avLL~gYwl~lm~~p~P~~~------------------------l~~~Gn~g~~~d~l~i~~~hLy~~------------ 188 (371)
T COG4299 145 AVLLAGYWLFLMFTPHPAAP------------------------LGGIGNVGESADPLQILNDHLYSA------------ 188 (371)
T ss_pred HHHHHHHHHHHhhcCCCccc------------------------cccccccccccchhhhhhhhhhcc------------
Confidence 99999999988777888643 234579999999999999999985
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 021994 269 SPFEGPLRKDAPSWCHAPFEPEGLLRFVGHH 299 (304)
Q Consensus 269 ~~~~g~~~~~~~~~~~~~fDPEGlLstl~~~ 299 (304)
.+-|||||+|||+|++
T Consensus 189 ---------------dG~~dpeGLlstvPtt 204 (371)
T COG4299 189 ---------------DGGFDPEGLLSTVPTT 204 (371)
T ss_pred ---------------cCCCCchhhhhcchHH
Confidence 1349999999999964
No 3
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=99.79 E-value=1.3e-18 Score=157.10 Aligned_cols=136 Identities=29% Similarity=0.344 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCC-ccc-cc-cC--CCCchhhHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHH
Q 021994 34 RLASLDIFRGLAVALMILVDHAGGD-WPE-IS-HA--PWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFR 108 (304)
Q Consensus 34 Ri~sLD~lRGlAI~~MIlVN~~g~~-~~~-l~-ha--~W~G~t~~DlvfPlFlFl~Gvsi~ls~~r~~~~~~~~~ki~rR 108 (304)
|+.+||++||+||++|+++|..... +.. .+ +. .+......|.++|.|+|++|+|++++.+|+.++ ++.+||
T Consensus 1 Ri~~lD~~RGlaii~Mi~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ap~F~fl~G~s~~l~~~~~~~~----~~~~~R 76 (223)
T PF07786_consen 1 RIPSLDALRGLAIIGMILVHFLFDLNYFGGWPQSWFGSFFWRFFRGLAAPLFLFLAGISLALSTGRRRRR----RKFLKR 76 (223)
T ss_pred CcHHHHHHHHHHHHhhhHhhCcChHhhcCccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccch----hHHHHH
Confidence 8999999999999999999986531 111 11 11 123345789999999999999999998877654 788999
Q ss_pred HHHHHHHHHHHhhccCCCCCcccccccccceeecchHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhHHHHHHH
Q 021994 109 TLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLVEIFTKDVQDKDQSVGRFSIFRLYCWHWLMA 188 (304)
Q Consensus 109 ~l~Lf~lGlll~~~~~~~~~~~t~~~~~~~~r~~GVLqrIgl~Y~v~all~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (304)
++.|+++|++++... +....+.+.++||||+||+++++++++ +.+++ +..++++
T Consensus 77 ~~~l~~~g~~i~~~~--------~~~~~~~~i~~gIL~~ig~~~ll~~~~-~~~~~-----------------~~~~~~~ 130 (223)
T PF07786_consen 77 GLKLFLLGLLINLLT--------FFFFPEGFIYFGILQFIGLSMLLAALF-LRLPR-----------------RALLILA 130 (223)
T ss_pred HHHHHHHHHHHHHHH--------HHhcCCceeehhHHHHHHHHHHHHHHH-Hhcch-----------------hHHHHHH
Confidence 999999999998642 223346677999999999999988776 23322 2345556
Q ss_pred HHHHHHHHHHH
Q 021994 189 ACVLVVYLALL 199 (304)
Q Consensus 189 ~~lL~~Y~~ll 199 (304)
++++++++.+.
T Consensus 131 ~~~~~~~~~l~ 141 (223)
T PF07786_consen 131 LLLLALSWLLS 141 (223)
T ss_pred HHHHHHHHHHh
Confidence 66666666544
No 4
>COG2311 Predicted membrane protein [Function unknown]
Probab=99.61 E-value=5.6e-15 Score=144.61 Aligned_cols=122 Identities=25% Similarity=0.425 Sum_probs=95.5
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHhccCCCccc----cccCCCCchhhHH-------------HHHHHHHHHHHHHH
Q 021994 26 EKSHLKTQRLASLDIFRGLAVALMILVDHAGGDWPE----ISHAPWNGCNLAD-------------FVMPFFLFIVGVAI 88 (304)
Q Consensus 26 ~~~~~~~~Ri~sLD~lRGlAI~~MIlVN~~g~~~~~----l~ha~W~G~t~~D-------------lvfPlFlFl~Gvsi 88 (304)
..|..+++|+.++|++||+|+++++++|.....+|. ..+..| .+..| .+.|+|+|++|+++
T Consensus 4 ~~p~~~~eRi~~LDilRG~AlLGILl~Ni~~F~~p~~~~~~~~~~~--~s~~D~~a~~~v~~f~~~KF~~lFs~LFG~G~ 81 (394)
T COG2311 4 LQPTAQRERILTLDILRGFALLGILLVNISAFGYPGAAYLNPWSGW--LSPLDAWAWALVDLFAQGKFLTLFSFLFGVGL 81 (394)
T ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhCchHHHhCcCccc--CChHHHHHHHHHHHHHHhhHHHHHHHHHHhHH
Confidence 456777899999999999999999999986543321 112222 12222 24899999999999
Q ss_pred HHHhhcCCchhHH-HHHHHHHHHHHHHHHHHHhhccCCCCCcccccccccceeecchHHHHHHHHHHHHHHHHHhccccc
Q 021994 89 ALALKRIPDRADA-VKKVIFRTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLVEIFTKDVQD 167 (304)
Q Consensus 89 ~ls~~r~~~~~~~-~~ki~rR~l~Lf~lGlll~~~~~~~~~~~t~~~~~~~~r~~GVLqrIgl~Y~v~all~l~~~~~~~ 167 (304)
.+..+|+.+|++. .+..+||...|+++|++|..++|. .||| +.|.+++++.+.++++++
T Consensus 82 ~~~~~r~~~~g~~~~~~~~RR~~~Lll~G~iH~~fiW~----------------GDIL----~~Ya~~g~ill~~~~~~~ 141 (394)
T COG2311 82 AMMLRRAARKGRRWVALYARRLLLLLLLGLIHALFIWD----------------GDIL----LAYALTGLILLLFRRRKP 141 (394)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHhc----------------chHH----HHHHHHHHHHHHHHhccc
Confidence 9999988777654 566899999999999999887665 2555 999999999999999887
Q ss_pred cc
Q 021994 168 KD 169 (304)
Q Consensus 168 ~~ 169 (304)
|+
T Consensus 142 k~ 143 (394)
T COG2311 142 KT 143 (394)
T ss_pred cH
Confidence 63
No 5
>COG3503 Predicted membrane protein [Function unknown]
Probab=99.59 E-value=1e-14 Score=137.46 Aligned_cols=136 Identities=24% Similarity=0.296 Sum_probs=101.8
Q ss_pred chhHHHHHHHHHHHHHHHHHhccCC--CccccccCCC-Cc--hhhHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHH
Q 021994 33 QRLASLDIFRGLAVALMILVDHAGG--DWPEISHAPW-NG--CNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIF 107 (304)
Q Consensus 33 ~Ri~sLD~lRGlAI~~MIlVN~~g~--~~~~l~ha~W-~G--~t~~DlvfPlFlFl~Gvsi~ls~~r~~~~~~~~~ki~r 107 (304)
+|+.+||++||+||+.|++.|...+ .+.+.+-+.- .| ..++..++|.|+|++|+|..++-.|+.++ .++.+|
T Consensus 14 ~R~~~ID~LRGla~l~MalyHf~~dl~ffg~~dl~~ta~g~~r~~ar~~A~~FlFLaG~Sl~L~~~r~~~r---~~~l~k 90 (323)
T COG3503 14 NRLGEIDILRGLALLAMALYHFFWDLEFFGYMDLATTALGLWRYFARLIASSFLFLAGVSLSLSHSRGLRR---WRFLVK 90 (323)
T ss_pred cchhhhHHHhHHHHHHHHHHHHHhhhhhcCccccchhhhhHHHHHHHHHHHHHHHHHhhHheeeccccccc---hHHHHH
Confidence 7999999999999999999996543 1111221111 11 34778999999999999999997766542 788999
Q ss_pred HHHHHHHHHHHHhhccCCCCCcccccccccceeecchHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhHHHHHH
Q 021994 108 RTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLVEIFTKDVQDKDQSVGRFSIFRLYCWHWLM 187 (304)
Q Consensus 108 R~l~Lf~lGlll~~~~~~~~~~~t~~~~~~~~r~~GVLqrIgl~Y~v~all~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (304)
|.++|+++++++..+ |+..-+++++++|||+.||++.++...+ +++++. ++..+
T Consensus 91 RgL~l~~l~l~It~~--------Twf~~P~sfI~fgILh~igLa~ll~~~f-l~lP~~-----------------~~l~~ 144 (323)
T COG3503 91 RGLKLAALALAITAV--------TWFAFPDSFIFFGILHAIGLASLLGAAF-LWLPRA-----------------VLLAL 144 (323)
T ss_pred HHHHHHHHHHHHHHe--------eeEecCCceehHHHHHHHHHHHHHHHHH-HhCchH-----------------HHHHH
Confidence 999999999999865 4444568999999999999998886544 444432 35566
Q ss_pred HHHHHHHHHH
Q 021994 188 AACVLVVYLA 197 (304)
Q Consensus 188 ~~~lL~~Y~~ 197 (304)
++++++++..
T Consensus 145 a~~~v~~~~l 154 (323)
T COG3503 145 AVAAVAAHIL 154 (323)
T ss_pred HHHHHHhHHh
Confidence 6666666654
No 6
>PRK10835 hypothetical protein; Provisional
Probab=99.26 E-value=3.9e-11 Score=117.31 Aligned_cols=103 Identities=22% Similarity=0.261 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHhccCCCccc-------ccc--CCCCch-------hhHHHHHHHHHHHHHHHHHHHhhcCCchhHH
Q 021994 38 LDIFRGLAVALMILVDHAGGDWPE-------ISH--APWNGC-------NLADFVMPFFLFIVGVAIALALKRIPDRADA 101 (304)
Q Consensus 38 LD~lRGlAI~~MIlVN~~g~~~~~-------l~h--a~W~G~-------t~~DlvfPlFlFl~Gvsi~ls~~r~~~~~~~ 101 (304)
+|++||+|+++++++|.+....+. ..+ +.++.. -+....+|+|++++|+++++..+|..+
T Consensus 1 lD~lRGfALlGIllvNi~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~gKf~~LFs~LFG~G~~l~~~r~~~---- 76 (373)
T PRK10835 1 LDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAISPSDAWTWAILDLVAQVKFLTLFALLFGAGLQLLLPRGKR---- 76 (373)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCccccccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhH----
Confidence 699999999999999965322111 111 011111 112346999999999999999875321
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCcccccccccceeecchHHHHHHHHHHHHHHHHHhcccc
Q 021994 102 VKKVIFRTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLVEIFTKDVQ 166 (304)
Q Consensus 102 ~~ki~rR~l~Lf~lGlll~~~~~~~~~~~t~~~~~~~~r~~GVLqrIgl~Y~v~all~l~~~~~~ 166 (304)
...||+..|+++|++|..++|+ .||| ..|.+++++.+.+++++
T Consensus 77 --~~~rRl~~Ll~~GliH~~llw~----------------GDIL----~~YAv~Gl~l~~~~~~~ 119 (373)
T PRK10835 77 --WIQSRLTLLVLLGFIHGLLFWD----------------GDIL----LAYGLVGLICWRLIRDA 119 (373)
T ss_pred --HHHHHHHHHHHHHHHHHHHHcc----------------chHH----HHHHHHHHHHHHHHhcc
Confidence 3669999999999999866554 3666 89999999998888864
No 7
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.37 E-value=5.4e-06 Score=81.06 Aligned_cols=83 Identities=27% Similarity=0.348 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCCccccccCCCCchhhHHHHHHHHHHHHHHHHHHHhhcCCchh---HHHHHHHHHHH
Q 021994 34 RLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRA---DAVKKVIFRTL 110 (304)
Q Consensus 34 Ri~sLD~lRGlAI~~MIlVN~~g~~~~~l~ha~W~G~t~~DlvfPlFlFl~Gvsi~ls~~r~~~~~---~~~~ki~rR~l 110 (304)
|...||.+||++++.|.+-|.+++.+..+.+.++ .+.|- +..|+|++|++..+.+.|+.+|. ...+|++||+.
T Consensus 1 Rd~riD~~RGlaL~~Ifi~Hip~~~~~~~T~~~~---Gfsda-AE~FVflSG~~~gl~Y~~~~~~~g~~~~~~r~~~Ra~ 76 (358)
T PF10129_consen 1 RDLRIDFFRGLALVMIFIDHIPGNVLEWFTLRNF---GFSDA-AEGFVFLSGYAAGLAYGRRFRRRGLWAATRRLWRRAW 76 (358)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCcHHHHhccccc---cCCCc-chhHhhHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHH
Confidence 7788999999999766666666654433333333 34442 46899999999999998765432 45789999999
Q ss_pred HHHHHHHHHh
Q 021994 111 KLLFWGILLQ 120 (304)
Q Consensus 111 ~Lf~lGlll~ 120 (304)
.|...-+++.
T Consensus 77 ~lY~a~i~l~ 86 (358)
T PF10129_consen 77 QLYVAHIALF 86 (358)
T ss_pred HHHHHHHHHH
Confidence 8877666543
No 8
>COG4645 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.94 E-value=8.1e-05 Score=72.15 Aligned_cols=86 Identities=22% Similarity=0.382 Sum_probs=61.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhccCCCccccccCCCCchhhHHHHHHHHHHHHHHHHHHHhhcCCchh-H--HHHHHHH
Q 021994 31 KTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRA-D--AVKKVIF 107 (304)
Q Consensus 31 ~~~Ri~sLD~lRGlAI~~MIlVN~~g~~~~~l~ha~W~G~t~~DlvfPlFlFl~Gvsi~ls~~r~~~~~-~--~~~ki~r 107 (304)
..+|+..||++||++++.|.+=|.++..+..+.|.+. .+.|- +-.|+|++|++..+.+.|+.-++ + ...|++|
T Consensus 20 ~mkRdtriDv~Ral~Lv~IfiNHvpgt~le~itHknf---gfsda-AEaFVliSGllvgmaYsrKf~~ggrla~~lkiWr 95 (410)
T COG4645 20 PMKRDTRIDVFRALALVTIFINHVPGTILEEITHKNF---GFSDA-AEAFVLISGLLVGMAYSRKFMKGGRLAGTLKIWR 95 (410)
T ss_pred ccCchhHHHHHHHHHHHHHHHhcccHHHHHHhhcccc---ccccc-chhhhhHHHHHHHHHHhhhhccCcHHHHHHHHHH
Confidence 3479999999999999887665556654455666554 23332 35799999999999998876443 3 3568999
Q ss_pred HHHHHHH---HHHHHh
Q 021994 108 RTLKLLF---WGILLQ 120 (304)
Q Consensus 108 R~l~Lf~---lGlll~ 120 (304)
|+..|.. .|+++.
T Consensus 96 RA~~LY~~himtl~ia 111 (410)
T COG4645 96 RAMVLYVAHIMTLVIA 111 (410)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999987 455444
No 9
>PF01757 Acyl_transf_3: Acyltransferase family; InterPro: IPR002656 This entry contains a range of acyltransferase enzymes as well as yet uncharacterised proteins from Caenorhabditis elegans. It also includes the protein OatA. The pathogenic bacteria, Staphylococcus aureus, is able to cause persistent infections due to its ability to resist the immune defence system. Lysozyme, a cell wall-lytic enzyme, is one of the first defence compounds induced in serum and tissues after the onset of infection. S. aureus has complete resistance to lysozyme action by O-acetylating its peptidoglycan (PG) by O-acetyltransferase (OatA) [, ]. Staphylococcus bacteria are one of the only bacterial genera that are resistant to lysozyme and tend to colonise the skin and mucosa of humans and animals []. OatA is an integral membrane protein. This entry also includes NolL proteins. NolL-dependent acetylation is specific for the fucosyl penta-N-acetylglucosamine species. In addition, the NolL protein caused elevated production of lipo-chitin oligosaccharides (LCOs). The NolL protein obtained from Rhizobium loti (Mesorhizobium loti) functions as an acetyl transferase [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=97.43 E-value=0.0025 Score=57.11 Aligned_cols=84 Identities=24% Similarity=0.317 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccc-cccCCCCch-----hhHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHH
Q 021994 36 ASLDIFRGLAVALMILVDHAGGDWPE-ISHAPWNGC-----NLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFRT 109 (304)
Q Consensus 36 ~sLD~lRGlAI~~MIlVN~~g~~~~~-l~ha~W~G~-----t~~DlvfPlFlFl~Gvsi~ls~~r~~~~~~~~~ki~rR~ 109 (304)
.++|.+||+|++++++.|........ ......... .......|+|.+++|+.++...+++++..+..+|-++|.
T Consensus 2 ~~iD~lR~ia~l~Vv~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ff~iSG~~~~~~~~~~~~~~~~~~~R~~rl 81 (340)
T PF01757_consen 2 YWIDGLRGIAILLVVFGHSFIFYFPPPFQGWPIFDSFSIFLFIGRFAVPLFFFISGYLLARSSKSRKSWKKFLKKRFLRL 81 (340)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcccccccchhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHH
Confidence 57999999999999999975521111 000000000 345567899999999999811111112223344445555
Q ss_pred HHHHHHHHHH
Q 021994 110 LKLLFWGILL 119 (304)
Q Consensus 110 l~Lf~lGlll 119 (304)
...+++..++
T Consensus 82 ~~~~~~~~~~ 91 (340)
T PF01757_consen 82 LIPYLFWSLI 91 (340)
T ss_pred hHHHHHHHHH
Confidence 5444444333
No 10
>PRK03854 opgC glucans biosynthesis protein; Provisional
Probab=97.38 E-value=0.00072 Score=65.65 Aligned_cols=90 Identities=20% Similarity=0.125 Sum_probs=57.8
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhccCC--Cccc----cccCCCCch--hhHH-HHHHHHHHHHHHHHHHHhhcCCchh
Q 021994 29 HLKTQRLASLDIFRGLAVALMILVDHAGG--DWPE----ISHAPWNGC--NLAD-FVMPFFLFIVGVAIALALKRIPDRA 99 (304)
Q Consensus 29 ~~~~~Ri~sLD~lRGlAI~~MIlVN~~g~--~~~~----l~ha~W~G~--t~~D-lvfPlFlFl~Gvsi~ls~~r~~~~~ 99 (304)
+++++|...+|.+|++++++.++.|.... .... .+.+.|... ...+ .-.|+|.|++|+....+.+|+ +.+
T Consensus 3 ~~~~~R~~~lD~lR~~a~l~VV~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~mplFf~iSG~~~~~~~~~~-~~~ 81 (375)
T PRK03854 3 PVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAEPSLWLTLLNDFIHAFRMQVFFVISGYFSYMLFLRY-PPK 81 (375)
T ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHH
Confidence 34467999999999999999999886421 1100 011122111 0111 248999999999988876554 334
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021994 100 DAVKKVIFRTLKLLFWGILL 119 (304)
Q Consensus 100 ~~~~ki~rR~l~Lf~lGlll 119 (304)
+..++-++|.+.-++++.++
T Consensus 82 ~f~~~R~~rl~iP~l~~~~~ 101 (375)
T PRK03854 82 RWLKVRLERVGIPMLTAIPL 101 (375)
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 56677788887777776544
No 11
>COG3274 Predicted O-acyltransferase [General function prediction only]
Probab=95.87 E-value=0.097 Score=50.79 Aligned_cols=57 Identities=18% Similarity=0.382 Sum_probs=40.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHhccCC-Cccc-cccC-CC---Cch-hhHHHHHHHHHHHHHHHH
Q 021994 32 TQRLASLDIFRGLAVALMILVDHAGG-DWPE-ISHA-PW---NGC-NLADFVMPFFLFIVGVAI 88 (304)
Q Consensus 32 ~~Ri~sLD~lRGlAI~~MIlVN~~g~-~~~~-l~ha-~W---~G~-t~~DlvfPlFlFl~Gvsi 88 (304)
.+|+.+||++|++|++..+.+|.... .+.. +.+. .| |.. +....+.|+|..+.|.-+
T Consensus 2 ~~ri~wiD~~r~iA~f~VV~iH~~~~~~t~~~~vs~~~w~i~nvlns~sr~aVPLFfmISGyL~ 65 (332)
T COG3274 2 QPRIVWIDLLRSIACFMVVMIHSTLWSVTEAHFVSPTLWIIANVLNSASRVAVPLFFMISGYLF 65 (332)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46999999999999998888887542 2222 1222 14 443 355667999999999753
No 12
>COG1835 Predicted acyltransferases [Lipid metabolism]
Probab=93.20 E-value=0.06 Score=52.50 Aligned_cols=66 Identities=23% Similarity=0.294 Sum_probs=43.8
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhccCCCccccccCCC--CchhhHHHHHHHHHHHHHHHHHHHhhcCCchhH
Q 021994 29 HLKTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPW--NGCNLADFVMPFFLFIVGVAIALALKRIPDRAD 100 (304)
Q Consensus 29 ~~~~~Ri~sLD~lRGlAI~~MIlVN~~g~~~~~l~ha~W--~G~t~~DlvfPlFlFl~Gvsi~ls~~r~~~~~~ 100 (304)
..+++|+.+||.+||+|+++.++.|........ +..+ +|. +...+|..++|+-++-.+.++.++++
T Consensus 9 ~~~~~~~~~ldgLR~iAal~Vv~~H~~~~~~~~--~~g~~~~g~----~gVdiFFvlSGfli~~~~~~~~~~~~ 76 (386)
T COG1835 9 NSSGGRLPGLDGLRAIAALLVVLYHAGFQIGPG--PGGFVGRGV----LGVDLFFVLSGFLITRSLLRSAAAPV 76 (386)
T ss_pred cccccccCCcHHHHHHHHHHHHHHHccccccCC--CCccccccc----cceeEeeeccHHHHHHHHHHHhhcCC
Confidence 344679999999999999999998875431110 1111 111 12347999999999998866554433
No 13
>PF05857 TraX: TraX protein; InterPro: IPR008875 This family consists of several bacterial TraX proteins. TraX is responsible for the N-terminal acetylation of F-pilin subunits [].
Probab=86.72 E-value=14 Score=33.39 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccccCCCCchhhHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHH
Q 021994 37 SLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFRTLKLLF 114 (304)
Q Consensus 37 sLD~lRGlAI~~MIlVN~~g~~~~~l~ha~W~G~t~~DlvfPlFlFl~Gvsi~ls~~r~~~~~~~~~ki~rR~l~Lf~ 114 (304)
|-|.+.=+|++.|++=|...-. ....+| -..+..+.||+|.|+..-++.- .+..+|.++|.+..-+
T Consensus 2 s~~~LK~iA~i~M~iDHi~~~~---~~~~~~-~~~iGR~afPlF~f~~~eG~~~--------T~n~~kY~~RL~~~al 67 (219)
T PF05857_consen 2 SGFQLKIIAIIAMLIDHIGFLF---FPDGPW-LRIIGRIAFPLFAFLLVEGFFH--------TRNRKKYLLRLLIFAL 67 (219)
T ss_pred chhHHHHHHHHHHHHHhhcccc---cCcchH-HHHhhHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHH
Confidence 4588889999999997765211 122223 1235677899999998777653 2345677777665433
No 14
>COG3594 NolL Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]
Probab=86.42 E-value=0.98 Score=44.35 Aligned_cols=50 Identities=26% Similarity=0.442 Sum_probs=36.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHhccCCCccccccCCCCc---hhhHHHHHHHHHHHHHHH
Q 021994 32 TQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNG---CNLADFVMPFFLFIVGVA 87 (304)
Q Consensus 32 ~~Ri~sLD~lRGlAI~~MIlVN~~g~~~~~l~ha~W~G---~t~~DlvfPlFlFl~Gvs 87 (304)
++|..++|+.||+-|++.++-|..+...+ |.- ....-.-+|+|.|++|+-
T Consensus 2 ~~R~~~~D~AKGigIlLVV~GH~~~p~~~------~~~~l~~~IysFHMPlFf~ISGyf 54 (343)
T COG3594 2 KKRDLWFDAAKGIGILLVVFGHILQPISP------WLSVLYKFIYSFHMPLFFFISGYF 54 (343)
T ss_pred chhHHHHhHhhccchhhhhhhhhcccccc------cchHHHHHHHHHHHHHHHhhhhhc
Confidence 57999999999999999999887553111 311 112233489999999985
No 15
>PHA02980 hypothetical protein; Provisional
Probab=61.68 E-value=75 Score=28.08 Aligned_cols=55 Identities=9% Similarity=0.091 Sum_probs=35.6
Q ss_pred CccccccCCCCchhhHHHH----HHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 021994 58 DWPEISHAPWNGCNLADFV----MPFFLFIVGVAIALALKRIPDRADAVKKVIFRTLKLLFWGILLQGGF 123 (304)
Q Consensus 58 ~~~~l~ha~W~G~t~~Dlv----fPlFlFl~Gvsi~ls~~r~~~~~~~~~ki~rR~l~Lf~lGlll~~~~ 123 (304)
.|..++...| ++.+-+ -+.--.+||+|..+..+++.+ .++.+.++++-+++|..|
T Consensus 32 ~Y~~L~KP~~---~PP~wvF~pVWtiLY~lMgiA~~lvw~~~~~--------~~~al~ly~~QL~LN~~W 90 (160)
T PHA02980 32 NYTKSNKHLI---FPPYYVRFSLYIISYIFMGHGMYLIHTRRRD--------SNELIAYYILQLSINLSW 90 (160)
T ss_pred CCccccCCCC---CCCcchHHHHHHHHHHHHHHHHHHHHHcccc--------cchHHHHHHHHHHHHHHH
Confidence 3445555555 333333 345667889999998855211 467778899999998753
No 16
>PRK13706 conjugal transfer pilus acetylation protein TraX; Provisional
Probab=56.20 E-value=1.2e+02 Score=28.63 Aligned_cols=66 Identities=20% Similarity=0.254 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccccccCCCCchhhHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 021994 36 ASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFRTLKL 112 (304)
Q Consensus 36 ~sLD~lRGlAI~~MIlVN~~g~~~~~l~ha~W~G~t~~DlvfPlFlFl~Gvsi~ls~~r~~~~~~~~~ki~rR~l~L 112 (304)
-++|.+.=+|++.|++=|.... .. ....|- ..+..+.||+|.|.-|+=++.- .+..+|..+|....
T Consensus 31 g~~dlLK~IAli~M~iDHi~~~-~~--~~~~~l-~~iGRlAfPiFafVeGfNla~h-------T~~r~kY~~RL~if 96 (248)
T PRK13706 31 GQRDIIKTVALVLMVLDHINRI-LH--LDQEWM-FLAGRGAFPLFALVWGLNLSRH-------AHIRQPAINRLWGW 96 (248)
T ss_pred chhHHHHHHHHHHHHHHHHHHH-hC--CcHHHH-HHHHHHHHHHHHHHHHHhhccc-------cchHHHHHHHHHHH
Confidence 3589999999999999665331 11 111120 1255678999999555533221 13346777776654
No 17
>COG3619 Predicted membrane protein [Function unknown]
Probab=52.86 E-value=88 Score=29.09 Aligned_cols=57 Identities=26% Similarity=0.289 Sum_probs=40.5
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 021994 64 HAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFRTLKLLFWGILLQGG 122 (304)
Q Consensus 64 ha~W~G~t~~DlvfPlFlFl~Gvsi~ls~~r~~~~~~~~~ki~rR~l~Lf~lGlll~~~ 122 (304)
-++++.....+...|++.|++|+...-.++|+..+ ...-.+.+...++++++.....
T Consensus 50 l~~~~~~~a~~~~~pii~Fv~Gv~~~~~~~r~~~~--~~~~~l~~~~~ll~~~v~~~~~ 106 (226)
T COG3619 50 LAEGDAALAVLLLLPILAFVLGVAAAELISRRATR--SFIPVLLLVSLLLALIALLALG 106 (226)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHh
Confidence 34445556778899999999999998888776544 3334566777777777776544
No 18
>TIGR02755 TraX_Ftype type-F conjugative transfer system pilin acetylase TraX. TraX is responsible for the acetylation of the F-pilin TraA during conjugative plasmid transfer. The purpose of this acetylation is unclear, but the reported transcriptional regulation of TraX may indicate that it is involved in the process of pilu extension/retraction.
Probab=51.75 E-value=1.7e+02 Score=27.16 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccccCCCCchhhHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHH
Q 021994 37 SLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFRTLKLL 113 (304)
Q Consensus 37 sLD~lRGlAI~~MIlVN~~g~~~~~l~ha~W~G~t~~DlvfPlFlFl~Gvsi~ls~~r~~~~~~~~~ki~rR~l~Lf 113 (304)
.+|.+.=+|++.|++=|...... ...+|- ..+..+.||+|.+.-|+=++. . .+..+|..+|.+..-
T Consensus 8 ~~dlLK~IAli~M~iDHi~~~~~---~~~~~l-~~iGR~AfPiF~lveGfNla~----~---T~~r~kY~~RL~~fA 73 (224)
T TIGR02755 8 QRDVIKTVALVLMVGDHINTIFQ---LDQEWL-FLAGRGAFPLFALVWGLNLSR----H---THIRQHAINRLWGWA 73 (224)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhC---CcHHHH-HHHHHHHHHHHHHHHHHhhcc----c---cchHHHHHHHHHHHH
Confidence 57999999999999966533211 111231 125567899999555543221 1 133466677655433
No 19
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=41.56 E-value=3.4e+02 Score=26.38 Aligned_cols=76 Identities=13% Similarity=0.063 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHhhcCC-------ch--hHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccccccceeecchHHHH
Q 021994 78 PFFLFIVGVAIALALKRIP-------DR--ADAVKKVIFRTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRI 148 (304)
Q Consensus 78 PlFlFl~Gvsi~ls~~r~~-------~~--~~~~~ki~rR~l~Lf~lGlll~~~~~~~~~~~t~~~~~~~~r~~GVLqrI 148 (304)
..+.+++.+...+...+.. ++ -+..+|.+||....++.-++..... ...+.-..-|+|+|+
T Consensus 92 a~~~~~~~~~~~l~rp~Gl~~~HF~w~~~~~~~~r~~l~~~~~~~~pl~~~~~~~----------~~~~~~~~~d~LGrl 161 (340)
T PF12794_consen 92 ALFWLVFEFFRRLLRPNGLAERHFGWPKERVQRLRRQLRWLIWVLVPLLFISIFA----------ENLPDGLARDVLGRL 161 (340)
T ss_pred HHHHHHHHHHHHHHCCCCeEeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------ccCchhhhhhhHHHH
Confidence 3455555555555543321 11 2456788888888877777765431 112233356888888
Q ss_pred HHHHHHHHHHHHHhc
Q 021994 149 ALSYLLVSLVEIFTK 163 (304)
Q Consensus 149 gl~Y~v~all~l~~~ 163 (304)
++....+.+.+...+
T Consensus 162 ~~ii~~~~l~~~~~~ 176 (340)
T PF12794_consen 162 AFIILLLLLAVFLWR 176 (340)
T ss_pred HHHHHHHHHHHHHHH
Confidence 877666655554443
No 20
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=40.53 E-value=3.2e+02 Score=25.80 Aligned_cols=77 Identities=25% Similarity=0.344 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHh--hcCC-chh-HHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccccccceeecchHHHHHH
Q 021994 75 FVMPFFLFIVGVAIALAL--KRIP-DRA-DAVKKVIFRTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIAL 150 (304)
Q Consensus 75 lvfPlFlFl~Gvsi~ls~--~r~~-~~~-~~~~ki~rR~l~Lf~lGlll~~~~~~~~~~~t~~~~~~~~r~~GVLqrIgl 150 (304)
+.+|+.+|+=|+++.=.+ ++.. +.- +....+---.+.+.++|+++|...| .++..-++-.+++
T Consensus 29 ~g~~~vlf~PGy~l~~~lfp~~~~l~~~er~~ls~glSi~~~~~~g~~l~~~~~-------------~i~~~~i~~~l~~ 95 (287)
T PF07760_consen 29 LGFPFVLFLPGYALVAALFPRKHDLDGIERLALSVGLSIAIVPLIGLLLNYTPW-------------GIRLIPILISLSI 95 (287)
T ss_pred HHHHHHHHhccHHHHHHHccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------CcchhHHHHHHHH
Confidence 357888888899998877 3322 111 1122223334456677888875422 2444556655555
Q ss_pred HHHHHHHHHHHhcc
Q 021994 151 SYLLVSLVEIFTKD 164 (304)
Q Consensus 151 ~Y~v~all~l~~~~ 164 (304)
.-++++++...-|+
T Consensus 96 ~t~~~~~~a~~rr~ 109 (287)
T PF07760_consen 96 FTLVLSIIAYIRRR 109 (287)
T ss_pred HHHHHHHHHHHhcc
Confidence 55555555544333
No 21
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.43 E-value=22 Score=35.73 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcc
Q 021994 182 CWHWLMAACVLVVYLALLYGTYVPDWQF 209 (304)
Q Consensus 182 ~~~~~~~~~lL~~Y~~ll~~l~vPg~~~ 209 (304)
.||=++....|+.|-+..++-+||+|.+
T Consensus 280 S~~R~V~~~~L~~~~~~~~~~~V~~~~~ 307 (549)
T KOG4683|consen 280 SWQRAVHDVCLFSGELAVLLALVATYLG 307 (549)
T ss_pred chhhhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 3455677777788888888888998854
No 22
>PF03073 TspO_MBR: TspO/MBR family; InterPro: IPR004307 Members of this group are involved in transmembrane signalling. In both prokaryotes and mitochondria they are localized to the outer membrane, and have been shown to bind and transport dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway [, ]. They are associated with the major outer membrane porins (in prokaryotes) and with the voltage-dependent anion channel (in mitochondria) []. Rhodobacter sphaeroides TspO (previously CrtK) is involved in signal transduction, functioning as a negative regulator of the expression of some photosynthesis genes (PpsR/AppA repressor/antirepressor regulon). This down-regulation is believed to be in response to oxygen levels. TspO works through (or modulates) the PpsR/AppA system and acts upstream of the site of action of these regulatory proteins []. It has been suggested that the TspO regulatory pathway works by regulating the efflux of certain tetrapyrrole intermediates of the haem/bacteriochlorophyll biosynthetic pathways in response to the availability of molecular oxygen, thereby causing the accumulation of a biosynthetic intermediate that serves as a corepressor for the regulated genes []. A homologue of the TspO protein in Rhizobium meliloti (Sinorhizobium meliloti) is involved in regulating expression of the ndi locus in response to stress conditions []. There is evidence that the S. meliloti TspO acts through, or in addition to, the FixL regulatory system. In animals, the peripheral-type benzodiazepine receptor (PBR, MBR) is a mitochondrial protein (located in the outer mitochondrial membrane) characterised by its ability to bind with nanomolar affinity to a variety of benzodiazepine-like drugs, as well as to dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway. Depending upon the tissue, it was shown to be involved in steroidogenesis, haem biosynthesis, apoptosis, cell growth and differentiation, mitochondrial respiratory control, and immune and stress response, but the precise function of the PBR remains unclear. The role of PBR in the regulation of cholesterol transport from the outer to the inner mitochondrial membrane, the rate-determining step in steroid biosynthesis, has been studied in detail. PBR is required for the binding, uptake and release, upon ligand activation, of the substrate cholesterol []. PBR forms a multimeric complex with the voltage-dependent anion channel (VDAC) [] and adenine nucleotide carrier []. Molecular modeling of PBR suggested that it might function as a channel for cholesterol. Indeed, cholesterol uptake and transport by bacterial cells was induced upon PBR expression. Mutagenesis studies identified a cholesterol recognition/interaction motif (CRAC) in the cytoplasmic C terminus of PBR [, ]. In complementation experiments, rat PBR (pk18) functionally substitutes for its homologue TspO in R. sphaeroides, negatively affecting transcription of specific photosynthesis genes []. This suggests that PBR may function as an oxygen sensor, transducing an oxygen-triggered signal leading to an adaptive cellular response. These observations suggest that fundamental aspects of this receptor and the downstream signal transduction pathway are conserved in bacteria and higher eukaryotic mitochondria. The alpha-3 subdivision of the purple bacteria is considered to be a likely source of the endosymbiont that ultimately gave rise to the mitochondrion. Therefore, it is possible that the mammalian PBR remains both evolutionarily and functionally related to the TspO of R. sphaeroides.; GO: 0016021 integral to membrane
Probab=39.15 E-value=2.1e+02 Score=24.20 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=35.9
Q ss_pred ccccccCCCCchhhHHHHHH----HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 021994 59 WPEISHAPWNGCNLADFVMP----FFLFIVGVAIALALKRIPDRADAVKKVIFRTLKLLFWGILLQGG 122 (304)
Q Consensus 59 ~~~l~ha~W~G~t~~DlvfP----lFlFl~Gvsi~ls~~r~~~~~~~~~ki~rR~l~Lf~lGlll~~~ 122 (304)
|..++...| ++.+-+|| .--.++|++..+..++.. ..+..++.+.++++-+++|..
T Consensus 26 y~~L~kP~~---~Pp~~~f~~vW~~ly~l~g~a~~~v~~~~~-----~~~~~~~~l~l~~~~l~ln~~ 85 (148)
T PF03073_consen 26 YDSLKKPSW---TPPGWVFGPVWTILYILMGIASYLVWRKGG-----GSPRRRRALALYAIQLALNFA 85 (148)
T ss_pred HhhccCCCC---CCcccHHHHHHHHHHHHHHHHHHhhHhccc-----CcchhHHHHHHHHHHHHHHHH
Confidence 445666666 34444443 333488999988876543 234457788889999988865
No 23
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=32.86 E-value=59 Score=23.08 Aligned_cols=20 Identities=15% Similarity=0.365 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhhcCCc
Q 021994 78 PFFLFIVGVAIALALKRIPD 97 (304)
Q Consensus 78 PlFlFl~Gvsi~ls~~r~~~ 97 (304)
|+|...+|++-++...++..
T Consensus 9 P~~av~iG~~ayyl~e~R~~ 28 (47)
T PF11654_consen 9 PLFAVFIGTSAYYLYENREG 28 (47)
T ss_pred hHHHHHHHHHHHHHHHHhcc
Confidence 88999999999999987553
No 24
>COG5062 Uncharacterized membrane protein [Function unknown]
Probab=31.56 E-value=92 Score=31.23 Aligned_cols=115 Identities=21% Similarity=0.281 Sum_probs=63.2
Q ss_pred cchhHHHHHHHHHHHHHHHH----HhccCCCccc-cccCCCCchhhHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHH
Q 021994 32 TQRLASLDIFRGLAVALMIL----VDHAGGDWPE-ISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVI 106 (304)
Q Consensus 32 ~~Ri~sLD~lRGlAI~~MIl----VN~~g~~~~~-l~ha~W~G~t~~DlvfPlFlFl~Gvsi~ls~~r~~~~~~~~~ki~ 106 (304)
..|..++|..|+..+..-++ |+.+ .++- +.-++--|.++-|+-.-.|+|-.|+--. |.+ .++.+
T Consensus 108 ~~~~~~it~yR~~i~~~tviaIlAvDFp--~fprRlgKsetwGtsLMDiGVGSFvynsGivs~----Rak-----sK~~l 176 (429)
T COG5062 108 PYTSMAITRYRFLIIGCTVIAILAVDFP--FFPRRLGKSETWGTSLMDIGVGSFVYNSGIVST----RAK-----SKRKL 176 (429)
T ss_pred ccchhhhHHHHHHHHHhhhhheeeeccc--cchHhhhhhhcccceeeecccceeEeccceeec----ccC-----ccHHH
Confidence 45788999999965532222 2222 1221 2222222677889888889888886421 222 13478
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcccccccccceeecchHHHHHHHHHHHHHHHHHhcc
Q 021994 107 FRTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLVEIFTKD 164 (304)
Q Consensus 107 rR~l~Lf~lGlll~~~~~~~~~~~t~~~~~~~~r~~GVLqrIgl~Y~v~all~l~~~~ 164 (304)
|-++.|+.+|++=...-- ..--.++.|=.||=.-.-+...++.+...+.++
T Consensus 177 kn~lillflGflR~f~vk-------~lnyqvhvrEyGvhwNFfftLgllnl~~~fir~ 227 (429)
T COG5062 177 KNALILLFLGFLRYFSVK-------LLNYQVHVREYGVHWNFFFTLGLLNLASLFIRT 227 (429)
T ss_pred HhhhHHHHHHHHHHHHHH-------HhccccccHHheeehhHHHHHHHHHHHHHHhhh
Confidence 889999999997543200 001124455455544443444555555555544
No 25
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=31.28 E-value=2.9e+02 Score=22.51 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhcccC
Q 021994 189 ACVLVVYLALLYGTYVP 205 (304)
Q Consensus 189 ~~lL~~Y~~ll~~l~vP 205 (304)
+.-++.|+.....+.+|
T Consensus 123 ~~~~~i~~~F~~~L~v~ 139 (141)
T PF07331_consen 123 VFAAVIYFVFAKLLGVP 139 (141)
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 44555666655554443
No 26
>PF07457 DUF1516: Protein of unknown function (DUF1516); InterPro: IPR010899 This family contains a number of hypothetical bacterial proteins of unknown function approximately 120 residues long.
Probab=29.22 E-value=3.3e+02 Score=22.44 Aligned_cols=19 Identities=16% Similarity=0.336 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhcccccc
Q 021994 150 LSYLLVSLVEIFTKDVQDK 168 (304)
Q Consensus 150 l~Y~v~all~l~~~~~~~~ 168 (304)
++-++.++.+..+.|++++
T Consensus 71 ~gl~vI~lmEm~l~rkkk~ 89 (110)
T PF07457_consen 71 LGLIVIGLMEMALARKKKG 89 (110)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 4556677888777766544
No 27
>COG4763 Predicted membrane protein [Function unknown]
Probab=28.79 E-value=17 Score=35.67 Aligned_cols=61 Identities=20% Similarity=0.365 Sum_probs=39.9
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhccCCCccc---cccCCCCchhhHH-HHHHHHHHHHHHHHHHH
Q 021994 28 SHLKTQRLASLDIFRGLAVALMILVDHAGGDWPE---ISHAPWNGCNLAD-FVMPFFLFIVGVAIALA 91 (304)
Q Consensus 28 ~~~~~~Ri~sLD~lRGlAI~~MIlVN~~g~~~~~---l~ha~W~G~t~~D-lvfPlFlFl~Gvsi~ls 91 (304)
-++.++|..=+|...|+.|++.++.|..-..|+. +.|.- ..+.| +=+|.|..+.|.-..-.
T Consensus 15 famnk~rm~W~d~aKGlsI~lVV~~h~~~~~y~g~~tf~h~l---~~~l~p~rmP~Ffl~sg~F~~~V 79 (388)
T COG4763 15 FAMNKQRMLWIDQAKGLSICLVVIYHSVITFYPGGTTFQHPL---SEVLSPCRMPYFFLYSGPFRMPV 79 (388)
T ss_pred cccCcccCcchhhhcCeeEEeeeeehheeeecCCCchhHhHH---HHhhchhhhHHHHHHhhHHHhHH
Confidence 3455889999999999999998888765443432 22211 11233 33888998888654433
No 28
>PRK13882 conjugal transfer protein TrbP; Provisional
Probab=26.56 E-value=5.2e+02 Score=23.95 Aligned_cols=72 Identities=14% Similarity=0.137 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccccCCCCchhhHHHHHHHHHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHH
Q 021994 37 SLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIP-DRADAVKKVIFRTLKLLFW 115 (304)
Q Consensus 37 sLD~lRGlAI~~MIlVN~~g~~~~~l~ha~W~G~t~~DlvfPlFlFl~Gvsi~ls~~r~~-~~~~~~~ki~rR~l~Lf~l 115 (304)
+.|.+.=+|++.|++=|...-..+. ....| ..+..+.||+|.|+..+=++ |.. ...+..+|..+|....-++
T Consensus 10 ~~~~LK~IAli~M~iDHi~~~~~~~-~~~~~--~~iGR~AfPiF~f~lv~nl~----~eGf~hT~n~~kY~~RL~ifAli 82 (232)
T PRK13882 10 TREALKWLALLLMTGDHVNKYLFNG-TLPVL--FEAGRVALPLFVFVLAYNLA----RPGALERGDYGRTMKRLALFGLL 82 (232)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCC-ChHHH--HHhhHHHHHHHHHHHHHhhc----cccchhcccHHHHHHHHHHHHHH
Confidence 4688999999999996653211110 01112 23667889999999763321 111 1123457777776654443
No 29
>PRK12567 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=25.40 E-value=3.6e+02 Score=24.86 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=18.4
Q ss_pred ceeecchHHHHHHHHHHHHHHHHHhcc
Q 021994 138 MIRLCGVLQRIALSYLLVSLVEIFTKD 164 (304)
Q Consensus 138 ~~r~~GVLqrIgl~Y~v~all~l~~~~ 164 (304)
.+|-+|-|..+.+-+..+.-+...+++
T Consensus 51 d~R~~DTlgE~~Vl~~A~~gv~~ll~~ 77 (218)
T PRK12567 51 RNRLYDTLGEVTVFFIAALGVGLLLAN 77 (218)
T ss_pred ehhchhhhHHHHHHHHHHHHHHHHHcc
Confidence 478899999988777655444444443
No 30
>PRK10263 DNA translocase FtsK; Provisional
Probab=23.59 E-value=1.3e+03 Score=27.36 Aligned_cols=8 Identities=25% Similarity=0.430 Sum_probs=4.3
Q ss_pred ecchHHHH
Q 021994 141 LCGVLQRI 148 (304)
Q Consensus 141 ~~GVLqrI 148 (304)
..|+++.+
T Consensus 142 gGGIIG~l 149 (1355)
T PRK10263 142 SGGVIGSL 149 (1355)
T ss_pred ccchHHHH
Confidence 45666544
No 31
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=22.61 E-value=3.1e+02 Score=20.99 Aligned_cols=12 Identities=42% Similarity=0.791 Sum_probs=8.4
Q ss_pred HHHhcccCCCcc
Q 021994 198 LLYGTYVPDWQF 209 (304)
Q Consensus 198 ll~~l~vPg~~~ 209 (304)
++..+-||+||+
T Consensus 47 ~~~lv~vP~Wp~ 58 (76)
T PF06645_consen 47 LTLLVVVPPWPF 58 (76)
T ss_pred HHHhheeCCcHh
Confidence 344566899986
Done!