Query 021994
Match_columns 304
No_of_seqs 258 out of 1061
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 12:24:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021994.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021994hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jo1_A Phospholemman; FXYD1, N 16.7 1.2E+02 0.0041 22.3 3.3 29 65-93 11-39 (72)
2 3n2f_G Na+/K+ ATPase gamma sub 15.3 46 0.0016 20.7 0.6 27 65-91 5-31 (31)
3 2jp3_A FXYD domain-containing 14.4 1.1E+02 0.0037 22.3 2.5 29 65-93 12-40 (67)
4 2zxe_G FXYD10, phospholemman-l 12.8 1.1E+02 0.0037 22.7 2.2 30 64-93 13-42 (74)
5 2ks1_B Epidermal growth factor 10.3 2.9E+02 0.0098 18.2 3.5 27 141-167 14-40 (44)
6 2l2t_A Receptor tyrosine-prote 10.0 3E+02 0.01 18.2 3.5 26 142-167 14-39 (44)
7 3r2j_A Alpha/beta-hydrolase-li 7.9 82 0.0028 27.4 -0.0 24 8-31 3-26 (227)
8 2l9u_A Receptor tyrosine-prote 7.7 3.1E+02 0.01 17.5 2.6 17 36-52 8-24 (40)
9 1hzn_A CCK-A receptor, cholecy 7.0 81 0.0028 19.4 -0.4 19 286-304 10-29 (31)
10 2jwa_A Receptor tyrosine-prote 6.1 3.9E+02 0.013 17.6 2.6 17 150-166 23-39 (44)
No 1
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=16.66 E-value=1.2e+02 Score=22.34 Aligned_cols=29 Identities=24% Similarity=0.505 Sum_probs=23.9
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q 021994 65 APWNGCNLADFVMPFFLFIVGVAIALALK 93 (304)
Q Consensus 65 a~W~G~t~~DlvfPlFlFl~Gvsi~ls~~ 93 (304)
-+|+.+....++|...+|++|+.+.+|-+
T Consensus 11 YDY~tLRiGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 11 YDYQSLQIGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp CSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhhccchHHHHHHHHHHHHHHHcCc
Confidence 34666667889999999999999999863
No 2
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=15.35 E-value=46 Score=20.69 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=19.8
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHH
Q 021994 65 APWNGCNLADFVMPFFLFIVGVAIALA 91 (304)
Q Consensus 65 a~W~G~t~~DlvfPlFlFl~Gvsi~ls 91 (304)
-.|+......+++..-+|++|+.+.+|
T Consensus 5 yDy~tLrigGLi~a~vLfi~gi~iils 31 (31)
T 3n2f_G 5 YDYETVRNGGLIFAALAFIVGLIIILS 31 (31)
T ss_dssp CCHHHHHHHHTTTHHHHHHHHHHHHTC
T ss_pred CChHHHhhcchhHHHHHHHHHHHHhcC
Confidence 346666677788888888888877653
No 3
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=14.40 E-value=1.1e+02 Score=22.28 Aligned_cols=29 Identities=31% Similarity=0.539 Sum_probs=23.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q 021994 65 APWNGCNLADFVMPFFLFIVGVAIALALK 93 (304)
Q Consensus 65 a~W~G~t~~DlvfPlFlFl~Gvsi~ls~~ 93 (304)
-.|+.+....++|...+|++|+.+.+|-+
T Consensus 12 YDY~tLRigGLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 12 YDWESLQLGGLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred cchHHheecchhhHHHHHHHHHHHHHcCc
Confidence 34666667889999999999999999853
No 4
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=12.83 E-value=1.1e+02 Score=22.69 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=24.2
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q 021994 64 HAPWNGCNLADFVMPFFLFIVGVAIALALK 93 (304)
Q Consensus 64 ha~W~G~t~~DlvfPlFlFl~Gvsi~ls~~ 93 (304)
+-.|+.+....++|...+|++|+.+.+|-+
T Consensus 13 ~YDY~tLRigGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 13 TYDYYRLRVVGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccchHHheeccchhHHHHHHHHHHHHHcCc
Confidence 334666677889999999999999999853
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=10.35 E-value=2.9e+02 Score=18.23 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=15.1
Q ss_pred ecchHHHHHHHHHHHHHHHHHhccccc
Q 021994 141 LCGVLQRIALSYLLVSLVEIFTKDVQD 167 (304)
Q Consensus 141 ~~GVLqrIgl~Y~v~all~l~~~~~~~ 167 (304)
..||..-+++.-+++.+++++.++++.
T Consensus 14 A~gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 14 ATGMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred EeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 446665554555555555666666543
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=10.03 E-value=3e+02 Score=18.18 Aligned_cols=26 Identities=8% Similarity=0.190 Sum_probs=14.0
Q ss_pred cchHHHHHHHHHHHHHHHHHhccccc
Q 021994 142 CGVLQRIALSYLLVSLVEIFTKDVQD 167 (304)
Q Consensus 142 ~GVLqrIgl~Y~v~all~l~~~~~~~ 167 (304)
.||..-+++.-+++.+.+++.|+++.
T Consensus 14 ~gVVgGv~~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 14 AGVIGGLFILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EeehHHHHHHHHHHHHHHHHhhhhhh
Confidence 45555444544555555566666543
No 7
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum}
Probab=7.94 E-value=82 Score=27.45 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=0.8
Q ss_pred cccCCCccccCCCcchhhcccccc
Q 021994 8 TTHHHPLIISEPDVSDQQEKSHLK 31 (304)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~ 31 (304)
..|||.+++|..|+.+....+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~ 26 (227)
T 3r2j_A 3 HHHHHHVGTGSNDDDDKSPDPPTL 26 (227)
T ss_dssp ----------------------CC
T ss_pred cccccccCCCCCCCCccCcCCCCC
Confidence 357888999999988866555443
No 8
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=7.65 E-value=3.1e+02 Score=17.50 Aligned_cols=17 Identities=35% Similarity=0.602 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021994 36 ASLDIFRGLAVALMILV 52 (304)
Q Consensus 36 ~sLD~lRGlAI~~MIlV 52 (304)
-+|-+.-|+++++|++-
T Consensus 8 malt~i~gl~vif~~lg 24 (40)
T 2l9u_A 8 MALTVIAGLVVIFMMLG 24 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 46778889999888874
No 9
>1hzn_A CCK-A receptor, cholecystokinin type A receptor; hormone/growth factor; NMR {Synthetic} SCOP: j.82.1.1
Probab=6.95 E-value=81 Score=19.43 Aligned_cols=19 Identities=11% Similarity=0.294 Sum_probs=13.5
Q ss_pred CCCCCccccccccccc-ccC
Q 021994 286 PFEPEGLLRFVGHHSI-YMH 304 (304)
Q Consensus 286 ~fDPEGlLstl~~~~~-~~~ 304 (304)
.|||+..-..+...+| |.|
T Consensus 10 aFd~~~~~~~l~~~~Isfih 29 (31)
T 1hzn_A 10 AYDTASAERRLSGTPISFIL 29 (31)
T ss_dssp HHHTTSTTCSSSSSCHHHHC
T ss_pred hcCchhhhhhccccceEEEE
Confidence 5888888777776666 444
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=6.09 E-value=3.9e+02 Score=17.65 Aligned_cols=17 Identities=29% Similarity=0.266 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhcccc
Q 021994 150 LSYLLVSLVEIFTKDVQ 166 (304)
Q Consensus 150 l~Y~v~all~l~~~~~~ 166 (304)
+..+++..+.+++||++
T Consensus 23 l~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhheehhh
Confidence 33334444455666554
Done!