Query 021994
Match_columns 304
No_of_seqs 258 out of 1061
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 12:25:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021994.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021994hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ctda_ a.39.1.5 (A:) Troponin 6.2 57 0.0041 19.0 0.1 14 236-249 14-27 (34)
2 d1tl2a_ b.67.1.1 (A:) Tachylec 6.1 54 0.0039 27.1 -0.1 17 286-302 93-109 (235)
3 d1knya2 d.218.1.1 (A:1-125) Ka 6.0 34 0.0025 25.3 -1.3 11 286-296 109-119 (125)
4 d1mxga1 b.71.1.1 (A:362-435) B 6.0 35 0.0026 22.9 -1.1 20 235-254 31-50 (74)
5 d1jbka_ c.37.1.20 (A:) ClpB, A 5.0 44 0.0032 26.8 -1.3 34 9-42 42-88 (195)
6 d1gmua2 d.58.38.1 (A:71-138) U 4.6 89 0.0065 20.8 0.3 7 285-291 60-66 (68)
7 d1qvra2 c.37.1.20 (A:149-535) 3.8 51 0.0037 29.0 -2.0 37 8-44 41-90 (387)
8 d1pj5a1 b.44.2.1 (A:743-830) N 3.3 1.5E+02 0.011 19.8 0.7 7 286-292 78-84 (88)
9 d1e8ga1 d.58.32.1 (A:274-560) 3.2 1.3E+02 0.0094 24.1 0.2 9 286-294 261-269 (287)
10 d2nwwa1 f.49.1.1 (A:12-416) Pr 3.1 9.7E+02 0.071 19.7 6.3 17 79-95 145-161 (405)
No 1
>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=6.16 E-value=57 Score=18.97 Aligned_cols=14 Identities=57% Similarity=0.724 Sum_probs=11.2
Q ss_pred CCChhhhhhhhhcC
Q 021994 236 PCNAVGYIDRKVLG 249 (304)
Q Consensus 236 ~~N~a~~IDr~iLG 249 (304)
+.|+-|||||-=|+
T Consensus 14 DkNaDGyiD~eEl~ 27 (34)
T d1ctda_ 14 DKNADGYIDIEELG 27 (34)
T ss_dssp CCSSSSCBCHHHHH
T ss_pred ccCCcccccHHHHH
Confidence 46889999997665
No 2
>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}
Probab=6.08 E-value=54 Score=27.12 Aligned_cols=17 Identities=35% Similarity=0.714 Sum_probs=12.2
Q ss_pred CCCCCcccccccccccc
Q 021994 286 PFEPEGLLRFVGHHSIY 302 (304)
Q Consensus 286 ~fDPEGlLstl~~~~~~ 302 (304)
-|||||+|-.+..-++|
T Consensus 93 ffdP~G~LyaVt~~~LY 109 (235)
T d1tl2a_ 93 FFDPNGYLYAVSKDKLY 109 (235)
T ss_dssp EECTTSCEEEEETTEEE
T ss_pred EECCCceEEEecCccee
Confidence 58999999877644443
No 3
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=6.01 E-value=34 Score=25.31 Aligned_cols=11 Identities=27% Similarity=0.483 Sum_probs=8.9
Q ss_pred CCCCCcccccc
Q 021994 286 PFEPEGLLRFV 296 (304)
Q Consensus 286 ~fDPEGlLstl 296 (304)
-|||||+++.|
T Consensus 109 LyD~~g~~~~l 119 (125)
T d1knya2 109 IYDSGGYLEKV 119 (125)
T ss_dssp EEESSSHHHHH
T ss_pred eecCcchHHHH
Confidence 48999998754
No 4
>d1mxga1 b.71.1.1 (A:362-435) Bacterial alpha-Amylase {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=5.98 E-value=35 Score=22.86 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=14.1
Q ss_pred CCCChhhhhhhhhcCCCCcc
Q 021994 235 PPCNAVGYIDRKVLGINHMY 254 (304)
Q Consensus 235 ~~~N~a~~IDr~iLG~~HlY 254 (304)
-.+|+.+|+|+.+=...-.|
T Consensus 31 ytgnlggwvdk~v~~~gwv~ 50 (74)
T d1mxga1 31 YTGNLGGWVDKRVDSSGWVY 50 (74)
T ss_dssp SSCTTSSCCEEECCTTSEEE
T ss_pred hcCCccceeeeeeccCCeEE
Confidence 34699999999986433334
No 5
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=4.96 E-value=44 Score=26.78 Aligned_cols=34 Identities=32% Similarity=0.541 Sum_probs=21.9
Q ss_pred ccCCCccccCCCcchh-------------hcccccccchhHHHHHHH
Q 021994 9 THHHPLIISEPDVSDQ-------------QEKSHLKTQRLASLDIFR 42 (304)
Q Consensus 9 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~Ri~sLD~lR 42 (304)
+...++.+||||+|.- +.++.-+..|+.++|.-|
T Consensus 42 ~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~ 88 (195)
T d1jbka_ 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 88 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH
T ss_pred CCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHH
Confidence 4557899999999972 222333445677777554
No 6
>d1gmua2 d.58.38.1 (A:71-138) Urease metallochaperone UreE, C-terminal domain {Klebsiella aerogenes [TaxId: 28451]}
Probab=4.56 E-value=89 Score=20.82 Aligned_cols=7 Identities=71% Similarity=1.364 Sum_probs=5.9
Q ss_pred CCCCCCc
Q 021994 285 APFEPEG 291 (304)
Q Consensus 285 ~~fDPEG 291 (304)
.||+|||
T Consensus 60 ~pF~PE~ 66 (68)
T d1gmua2 60 LPFEPEA 66 (68)
T ss_dssp EECCCCS
T ss_pred ecCCCCC
Confidence 5899997
No 7
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=3.83 E-value=51 Score=29.02 Aligned_cols=37 Identities=32% Similarity=0.485 Sum_probs=23.3
Q ss_pred cccCCCccccCCCcchh-------------hcccccccchhHHHHHHHHH
Q 021994 8 TTHHHPLIISEPDVSDQ-------------QEKSHLKTQRLASLDIFRGL 44 (304)
Q Consensus 8 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Ri~sLD~lRGl 44 (304)
.+...|+.+||||+|-- +.++.-+..|+.++|+-|=+
T Consensus 41 ~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ 90 (387)
T d1qvra2 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLL 90 (387)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----
T ss_pred CCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhh
Confidence 45567899999999972 22334445688888875533
No 8
>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]}
Probab=3.32 E-value=1.5e+02 Score=19.83 Aligned_cols=7 Identities=14% Similarity=0.453 Sum_probs=5.7
Q ss_pred CCCCCcc
Q 021994 286 PFEPEGL 292 (304)
Q Consensus 286 ~fDPEGl 292 (304)
.||||+-
T Consensus 78 ~yDP~~~ 84 (88)
T d1pj5a1 78 LYDPKMT 84 (88)
T ss_dssp SSCTTCT
T ss_pred CCCCCCc
Confidence 5999984
No 9
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]}
Probab=3.23 E-value=1.3e+02 Score=24.06 Aligned_cols=9 Identities=22% Similarity=0.859 Sum_probs=8.2
Q ss_pred CCCCCcccc
Q 021994 286 PFEPEGLLR 294 (304)
Q Consensus 286 ~fDPEGlLs 294 (304)
.|||.|||.
T Consensus 261 a~DP~gIlN 269 (287)
T d1e8ga1 261 AVDPNGIIA 269 (287)
T ss_dssp HHCTTCCBC
T ss_pred HhCCCcCCC
Confidence 699999997
No 10
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=3.08 E-value=9.7e+02 Score=19.66 Aligned_cols=17 Identities=35% Similarity=0.702 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhhcC
Q 021994 79 FFLFIVGVAIALALKRI 95 (304)
Q Consensus 79 lFlFl~Gvsi~ls~~r~ 95 (304)
.|..++|+++....+++
T Consensus 145 ~fail~Gial~~~~~~~ 161 (405)
T d2nwwa1 145 FFAIILGIAITYLMNSE 161 (405)
T ss_dssp HHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHhcccc
Confidence 58888999988776544
Done!