BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021995
(304 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 196/234 (83%), Positives = 217/234 (92%)
Query: 71 SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
SNVVSVAEDELMRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+GTVG GRIGK
Sbjct: 124 SNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGK 183
Query: 131 LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190
LLLQRLKPF CNLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGM
Sbjct: 184 LLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGM 243
Query: 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYM 250
F+K+ I K+KKGVLIVNNARGAIM+ QAVVDA SGHI GYSGDVW+PQPAPKDHPWRYM
Sbjct: 244 FNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYM 303
Query: 251 PNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 304
PNQAMTPH SGTTIDAQLRYAAG KDML+RYFKGEDFP +NYIVK GELAPQYR
Sbjct: 304 PNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR 357
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/20 (85%), Positives = 18/20 (90%)
Query: 36 KKIVGVFYKGNEYASMNPNF 55
KKIVGVFYK NEYA+ NPNF
Sbjct: 9 KKIVGVFYKANEYATKNPNF 28
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 427 bits (1098), Expect = e-120, Method: Compositional matrix adjust.
Identities = 196/234 (83%), Positives = 217/234 (92%)
Query: 71 SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
SNVVSVAEDELMRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+GTVG GRIGK
Sbjct: 118 SNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGK 177
Query: 131 LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190
LLLQRLKPF CNLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGM
Sbjct: 178 LLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGM 237
Query: 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYM 250
F+K+ I K+KKGVLIVNNARGAIM+ QAVVDA SGHI GYSGDVW+PQPAPKDHPWRYM
Sbjct: 238 FNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYM 297
Query: 251 PNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 304
PNQAMTPH SGTTIDAQLRYAAG KDML+RYFKGEDFP +NYIVK GELAPQYR
Sbjct: 298 PNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR 351
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/20 (85%), Positives = 18/20 (90%)
Query: 36 KKIVGVFYKGNEYASMNPNF 55
KKIVGVFYK NEYA+ NPNF
Sbjct: 3 KKIVGVFYKANEYATKNPNF 22
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 239 bits (610), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 119/235 (50%), Positives = 162/235 (68%), Gaps = 7/235 (2%)
Query: 71 SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
SNVVSVAE +M +L+LVRNF+P H Q+I+ +W VA +A AYD+EGKT+ T+G GRIG
Sbjct: 119 SNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGY 178
Query: 131 LLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 189
+L+RL PFN LLY+D + E++ GA+ E+++ ++ + DIV VN PL T+G
Sbjct: 179 RVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKG 238
Query: 190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRY 249
+ +K+ ++K KKG +VN ARGAI + V A SG + GY GDVW PQPAPKDHPWR
Sbjct: 239 LINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRD 298
Query: 250 MPNQ-----AMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGE 298
M N+ AMTPH SGTT+DAQ RYA G K++L+ +F G+ D+ Q+ I+ GE
Sbjct: 299 MRNKYGAGNAMTPHYSGTTLDAQTRYAQGTKNILESFFTGKFDYRPQDIILLNGE 353
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 236 bits (602), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 118/235 (50%), Positives = 161/235 (68%), Gaps = 7/235 (2%)
Query: 71 SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
SNVVSVAE +M +L+LVRNF+P H Q+I+ +W VA +A AYD+EGKT+ T+G GRIG
Sbjct: 118 SNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGY 177
Query: 131 LLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 189
+L+RL PFN LLY+D + E++ GA+ E+++ ++ + DIV VN PL T+G
Sbjct: 178 RVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKG 237
Query: 190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRY 249
+ +K+ ++K KKG +VN ARGAI + V A SG + GY GDVW PQPAPKDHPWR
Sbjct: 238 LINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRD 297
Query: 250 MPNQ-----AMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGE 298
M N+ AMTPH SGTT+DAQ RYA G ++L+ +F G+ D+ Q+ I+ GE
Sbjct: 298 MRNKYGAGNAMTPHYSGTTLDAQTRYAQGTVNILESFFTGKFDYRPQDIILLNGE 352
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 230 bits (586), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 111/229 (48%), Positives = 144/229 (62%)
Query: 72 NVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKL 131
N +SVAE +M IL LVRN+LP H G WN+A AYDLE VGTV GRIG
Sbjct: 147 NSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLA 206
Query: 132 LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 191
+L+RL PF+ +L Y DR ++ +EKE + + M P CD+V +N PL +T M
Sbjct: 207 VLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMI 266
Query: 192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMP 251
+ + + K+G IVN ARG + D AV A SG +AGY+GDVW PQPAPKDHPWR MP
Sbjct: 267 NDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMP 326
Query: 252 NQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 300
MTPH+SGTT+ AQ RYAAG +++L+ +F+G + IV+ G LA
Sbjct: 327 YNGMTPHISGTTLTAQARYAAGTREILEXFFEGRPIRDEYLIVQGGALA 375
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 229 bits (583), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 111/229 (48%), Positives = 144/229 (62%)
Query: 72 NVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKL 131
N +SVAE +M IL LVRN+LP H G WN+A AYDLE VGTV GRIG
Sbjct: 146 NSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLA 205
Query: 132 LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 191
+L+RL PF+ +L Y DR ++ +EKE + + M P CD+V +N PL +T M
Sbjct: 206 VLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMI 265
Query: 192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMP 251
+ + + K+G IVN ARG + D AV A SG +AGY+GDVW PQPAPKDHPWR MP
Sbjct: 266 NDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMP 325
Query: 252 NQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 300
MTPH+SGTT+ AQ RYAAG +++L+ +F+G + IV+ G LA
Sbjct: 326 YNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALA 374
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 229 bits (583), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 111/229 (48%), Positives = 144/229 (62%)
Query: 72 NVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKL 131
N +SVAE +M IL LVRN+LP H G WN+A AYDLE VGTV GRIG
Sbjct: 147 NSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLA 206
Query: 132 LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 191
+L+RL PF+ +L Y DR ++ +EKE + + M P CD+V +N PL +T M
Sbjct: 207 VLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMI 266
Query: 192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMP 251
+ + + K+G IVN ARG + D AV A SG +AGY+GDVW PQPAPKDHPWR MP
Sbjct: 267 NDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMP 326
Query: 252 NQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 300
MTPH+SGTT+ AQ RYAAG +++L+ +F+G + IV+ G LA
Sbjct: 327 YNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALA 375
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 145/229 (63%)
Query: 72 NVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKL 131
N SVAE +M +L LVRN++P H +G WN+A R+YD+EG VGTV GRIG
Sbjct: 146 NSNSVAEHVVMMVLGLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLR 205
Query: 132 LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 191
+L+ L PF+ +L Y DR ++ +EKE + + M CD+V +N PL +T M
Sbjct: 206 VLRLLAPFDMHLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMI 265
Query: 192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMP 251
+ + + K+G +VN ARG + D A+V A SG +AGY+GDVW PQPAP DHPWR MP
Sbjct: 266 NDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMP 325
Query: 252 NQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 300
+ MTPH+SGT++ AQ RYAAG +++L+ YF+G + IV+ G LA
Sbjct: 326 HNGMTPHISGTSLSAQTRYAAGTREILECYFEGRPIRDEYLIVQGGGLA 374
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 218 bits (556), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 145/229 (63%)
Query: 72 NVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKL 131
N SVAE +M +L LVRN++P H +G WN+A R+YD+EG VGTV GRIG
Sbjct: 147 NSNSVAEHVVMMVLGLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLR 206
Query: 132 LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 191
+L+ L PF+ +L Y DR ++ +EKE + + M CD+V +N PL +T M
Sbjct: 207 VLRLLAPFDMHLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMI 266
Query: 192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMP 251
+ + + K+G +VN ARG + D A+V A SG +AGY+GDVW PQPAP DHPWR MP
Sbjct: 267 NDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMP 326
Query: 252 NQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 300
+ MTPH+SGT++ AQ RYAAG +++L+ YF+G + IV+ G LA
Sbjct: 327 HNGMTPHISGTSLSAQTRYAAGTREILECYFEGRPIRDEYLIVQGGGLA 375
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 98/180 (54%), Gaps = 3/180 (1%)
Query: 109 AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD 168
++ ++ GKTVG VG GRIG+L+ QR+ F ++ +D + P + G + LD
Sbjct: 134 SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDP-YVSPARAAQLGIELLS-LD 191
Query: 169 TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 228
+L + D + V+ P T +T G+ DK+ +AK K GV+IVN ARG ++D A+ DA + GH+
Sbjct: 192 DLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHV 251
Query: 229 AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
DV+ +P D P + +TPH+ +T +AQ R V + + GE P
Sbjct: 252 RAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVP 310
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 98/180 (54%), Gaps = 3/180 (1%)
Query: 109 AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD 168
++ ++ GKTVG VG GRIG+L+ QR+ F ++ +D + P + G + LD
Sbjct: 133 SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDP-YVSPARAAQLGIELLS-LD 190
Query: 169 TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 228
+L + D + V+ P T +T G+ DK+ +AK K GV+IVN ARG ++D A+ DA + GH+
Sbjct: 191 DLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHV 250
Query: 229 AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
DV+ +P D P + +TPH+ +T +AQ R V + + GE P
Sbjct: 251 RAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVP 309
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 107/197 (54%), Gaps = 7/197 (3%)
Query: 75 SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAY----RAYDLEGKTVGTVGCGRIGK 130
+VAE + I+ L+R + GEW + R L GK VG +G G IGK
Sbjct: 100 AVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGK 159
Query: 131 LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190
+ +RL PF L Y R + +EKE A++ D+D +L K DIV++ PLT T +
Sbjct: 160 AIARRLIPFGVKLYYWSRHR-KVNVEKELKARYM-DIDELLEKSDIVILALPLTRDTYHI 217
Query: 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYM 250
+++R+ K++ G +VN RGA++D +AV +A G + GY+ DV+ +P + ++Y
Sbjct: 218 INEERVKKLE-GKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYE 276
Query: 251 PNQAMTPHVSGTTIDAQ 267
+TPH +G ++AQ
Sbjct: 277 WETVLTPHYAGLALEAQ 293
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 113/210 (53%), Gaps = 4/210 (1%)
Query: 75 SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQ 134
SVAE + + + R ++ G W A +LEGKT+G +G GRIG + +
Sbjct: 102 SVAELAVGLMFSVARKIAFADRKMREGVW--AKKEAMGIELEGKTIGIIGFGRIGYQVAK 159
Query: 135 RLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 194
N+L +D + + KE KF DL+T+L + D+V ++ PL E T + +++
Sbjct: 160 IANALGMNILLYDPYP-NEERAKEVNGKFV-DLETLLKESDVVTIHVPLVESTYHLINEE 217
Query: 195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQA 254
R+ MKK +++N +RG ++DT A+V A G IAG DV+ +P PKDHP N
Sbjct: 218 RLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVV 277
Query: 255 MTPHVSGTTIDAQLRYAAGVKDMLDRYFKG 284
+TPH+ +T++AQ R V + + + KG
Sbjct: 278 LTPHIGASTVEAQERAGVEVAEKVVKILKG 307
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 118/205 (57%), Gaps = 8/205 (3%)
Query: 89 RNFLPGHHQVISGEWNVAGVAYR-----AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 143
R+ + G V SGEW GVA+ YD+ GKT+G +G GRIG+ + +R K FN +
Sbjct: 117 RHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRI 176
Query: 144 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 203
LY+ R + + ++E+E A+F+ L+ +L + D VV+ PLT +T + +++R+ MKK
Sbjct: 177 LYYSRTRKE-EVERELNAEFK-PLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTA 234
Query: 204 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 263
+++N ARG ++DT A+V A G IAG DV+ +P + ++ + N +TPH+ +
Sbjct: 235 ILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFK-LDNVVLTPHIGSAS 293
Query: 264 IDAQLRYAAGVKDMLDRYFKGEDFP 288
A+ A V L + +GE P
Sbjct: 294 FGAREGMAELVAKNLIAFKRGEIPP 318
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 5/216 (2%)
Query: 72 NVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKL 131
N +S AE I+ L R + G+W + +L GKT+G +G GRIG+
Sbjct: 122 NSLSAAELTCGMIMCLARQIPQATASMKDGKWERK--KFMGTELNGKTLGILGLGRIGRE 179
Query: 132 LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 191
+ R++ F + +D + + P++ G + + L+ + P CD + V+TPL T G+
Sbjct: 180 VATRMQSFGMKTIGYDPI-ISPEVSASFGVQ-QLPLEEIWPLCDFITVHTPLLPSTTGLL 237
Query: 192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMP 251
+ + A+ KKGV +VN ARG I+D A++ A SG AG + DV+ +P P+D
Sbjct: 238 NDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHE 296
Query: 252 NQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF 287
N PH+ +T +AQ R + KG+
Sbjct: 297 NVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSL 332
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 107/215 (49%), Gaps = 10/215 (4%)
Query: 71 SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
SN SVAE + I++L+R P +G W + R ++ GKT+G VG G IG
Sbjct: 112 SNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSR--EVRGKTLGIVGYGNIGS 169
Query: 131 LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190
+ + + Y+D +L+ K LD +L D+V ++ P ++ T +
Sbjct: 170 QVGNLAESLGMTVRYYD---TSDKLQYGN-VKPAASLDELLKTSDVVSLHVPSSKSTSKL 225
Query: 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDH----P 246
+ ++ KMKKG ++NNARG+ +D +A+ GH+AG + DV+ +PA P
Sbjct: 226 ITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTP 285
Query: 247 WRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 281
+ + N +TPH+ G+T +AQ R V L Y
Sbjct: 286 LQGLENVILTPHIGGSTEEAQERIGTEVTRKLVEY 320
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 116/202 (57%), Gaps = 8/202 (3%)
Query: 89 RNFLPGHHQVISGEWNVAGVAYR-----AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 143
R+ + G V SGEW GVA+ YD+ GKT+G +G GRIG+ + +R K FN +
Sbjct: 117 RHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNXRI 176
Query: 144 LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 203
LY+ R + + ++E+E A+F+ L+ +L + D VV+ PLT +T + +++R+ KK
Sbjct: 177 LYYSRTRKE-EVERELNAEFK-PLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTA 234
Query: 204 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 263
+++N ARG ++DT A+V A G IAG DV+ +P + ++ + N +TPH+ +
Sbjct: 235 ILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFK-LDNVVLTPHIGSAS 293
Query: 264 IDAQLRYAAGVKDMLDRYFKGE 285
A+ A V L + +GE
Sbjct: 294 FGAREGXAELVAKNLIAFKRGE 315
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 92/166 (55%), Gaps = 8/166 (4%)
Query: 123 VGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP 182
VG GRIG+ + +R F ++YH R K F L+ +L + D+V ++TP
Sbjct: 150 VGMGRIGQAVAKRALAFGMRVVYHARTP------KPLPYPFL-SLEELLKEADVVSLHTP 202
Query: 183 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP 242
LT +T + +++R+ MK+G +++N ARGA++DT+A+V+A GH+ G DV +P+P P
Sbjct: 203 LTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEAL-RGHLFGAGLDVTDPEPLP 261
Query: 243 KDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
HP +PN +TPH+ + R A + L +G + P
Sbjct: 262 PGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREPP 307
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 103/195 (52%), Gaps = 6/195 (3%)
Query: 72 NVVSVAEDELMRILIL--VRNFLPGHHQVISGEWNVAG-VAYRAYDLEGKTVGTVGCGRI 128
+V+S A E+ +L+L R V SG W G L G+ +G G GRI
Sbjct: 125 DVLSDACAEIAXLLVLNACRRGYEADRXVRSGSWPGWGPTQLLGXGLTGRRLGIFGXGRI 184
Query: 129 GKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR 188
G+ + R + F + YH+R ++ LE+ GA + + LD++L DI ++ P + +
Sbjct: 185 GRAIATRARGFGLAIHYHNRTRLSHALEE--GAIYHDTLDSLLGASDIFLIAAPGRPELK 242
Query: 189 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWR 248
G D DRIAK+ +G +++N +RG +++ A+++A S H+ DV+ +PA D +R
Sbjct: 243 GFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPA-IDPRYR 301
Query: 249 YMPNQAMTPHVSGTT 263
+ N +TPH+ T
Sbjct: 302 SLDNIFLTPHIGSAT 316
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 103/216 (47%), Gaps = 4/216 (1%)
Query: 74 VSVAEDELMRILIL--VRNFLPGHHQVISGEW-NVAGVAYRAYDLEGKTVGTVGCGRIGK 130
V+VA E+ +L+L R G + + W + L+ KT+G G G IG+
Sbjct: 100 VTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQ 159
Query: 131 LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190
L +R + F+ ++ Y D + E A F + LD++L +N P T +TR
Sbjct: 160 ALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYF 219
Query: 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYM 250
F+K I + +G ++VN ARG ++D + VV A +G +A DV+ +P + + +
Sbjct: 220 FNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYD-L 278
Query: 251 PNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGED 286
PN + PH+ A+ A D++D F G D
Sbjct: 279 PNTFLFPHIGSAATQAREDMAHQANDLIDALFGGAD 314
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 103/221 (46%), Gaps = 10/221 (4%)
Query: 75 SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRA-YDLEGKTVGTVGCGRIGKLLL 133
+ AE + +L R +V +G W + Y L TVG +G GRIG+ +
Sbjct: 112 TTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIA 171
Query: 134 QRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDT---MLPKCDIVVVNTPLTEKTRG 189
+RLKPF LY R Q E A+F+ + + + + D +VV LT T G
Sbjct: 172 RRLKPFGVQRFLYTGR-----QPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEG 226
Query: 190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRY 249
+ +KD KMK+ + +N +RG +++ + A +SG IA DV +P+P P +HP
Sbjct: 227 LCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLT 286
Query: 250 MPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQ 290
+ N + PH+ T + + + L +GE P +
Sbjct: 287 LKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSE 327
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 10/194 (5%)
Query: 75 SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRA-YDLEGKTVGTVGCGRIGKLLL 133
+ AE + +L R +V +G W + Y L TVG +G GRIG+ +
Sbjct: 110 TTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIA 169
Query: 134 QRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDT---MLPKCDIVVVNTPLTEKTRG 189
+RLKPF LY R Q E A+F+ + + + + D +VV LT T G
Sbjct: 170 RRLKPFGVQRFLYTGR-----QPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEG 224
Query: 190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRY 249
+ +KD K K+ + +N +RG +++ + A +SG IA DV +P+P P +HP
Sbjct: 225 LCNKDFFQKXKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLT 284
Query: 250 MPNQAMTPHVSGTT 263
+ N + PH+ T
Sbjct: 285 LKNCVILPHIGSAT 298
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 104/215 (48%), Gaps = 10/215 (4%)
Query: 71 SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
SN SVAE + +L+L+R + + G WN +A +++ GK +G +G G IG
Sbjct: 107 SNTRSVAELVIGELLLLLRGVPEANAKAHRGVWN--KLAAGSFEARGKKLGIIGYGHIGT 164
Query: 131 LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190
L + + ++D P L T + DL M D+V ++ P T+ M
Sbjct: 165 QLGILAESLGMYVYFYDIENKLP-LGNATQVQHLSDLLNM---SDVVSLHVPENPSTKNM 220
Query: 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA----PKDHP 246
I+ MK G L++N +RG ++D A+ DA +S H+AG + DV+ +PA P P
Sbjct: 221 MGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSP 280
Query: 247 WRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 281
N +TPH+ G+T +AQ V L +Y
Sbjct: 281 LAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKY 315
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 104/215 (48%), Gaps = 10/215 (4%)
Query: 71 SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
SN SVAE + +L+L+R + + G WN +A +++ GK +G +G G IG
Sbjct: 107 SNTRSVAELVIGELLLLLRGVPEANAKAHRGVWN--KLAAGSFEARGKKLGIIGYGHIGT 164
Query: 131 LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190
L + + ++D P L T + DL M D+V ++ P T+ M
Sbjct: 165 QLGILAESLGMYVYFYDIENKLP-LGNATQVQHLSDLLNM---SDVVSLHVPENPSTKNM 220
Query: 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA----PKDHP 246
I+ MK G L++N +RG ++D A+ DA +S H+AG + DV+ +PA P P
Sbjct: 221 MGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSP 280
Query: 247 WRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 281
N +TPH+ G+T +AQ V L +Y
Sbjct: 281 LAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKY 315
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 104/215 (48%), Gaps = 10/215 (4%)
Query: 71 SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
SN SVAE + +L+L+R + + G WN +A +++ GK +G +G G IG
Sbjct: 106 SNTRSVAELVIGELLLLLRGVPEANAKAHRGVWN--KLAAGSFEARGKKLGIIGYGHIGT 163
Query: 131 LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190
L + + ++D P L T + DL M D+V ++ P T+ M
Sbjct: 164 QLGILAESLGMYVYFYDIENKLP-LGNATQVQHLSDLLNM---SDVVSLHVPENPSTKNM 219
Query: 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA----PKDHP 246
I+ MK G L++N +RG ++D A+ DA +S H+AG + DV+ +PA P P
Sbjct: 220 MGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSP 279
Query: 247 WRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 281
N +TPH+ G+T +AQ V L +Y
Sbjct: 280 LCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKY 314
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 16/166 (9%)
Query: 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 173
++ + VG VG G IG++ +Q ++ F ++ +D + +P+LEK+ + + LD + +
Sbjct: 143 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR-NPELEKK--GYYVDSLDDLYKQ 199
Query: 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 233
D++ ++ P M + + IAKMK+ V+IVN +RG ++DT AV+ SG I GY+
Sbjct: 200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAM 259
Query: 234 DVWNPQPAPKDHPWR-------------YMPNQAMTPHVSGTTIDA 266
DV+ + + W PN +TPH + T A
Sbjct: 260 DVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPHTAFYTTHA 305
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 7/196 (3%)
Query: 71 SNVVSVAEDELMRILILVRNFLPGHHQVISGEW-----NVAGVAYRAYDLEGKTVGTVGC 125
++V A+ L IL L R H + G + VA A + G+T+G +G
Sbjct: 120 ASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGL 179
Query: 126 GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE 185
GR+G+ + R K F N+L++D D +E+ G + L +L D V ++ L E
Sbjct: 180 GRVGQAVALRAKAFGFNVLFYDPYLSDG-IERALGLQRVSTLQDLLFHSDCVTLHCGLNE 238
Query: 186 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP-APKD 244
+ + + +M++G +VN ARG ++D +A+ A G I G + DV +P +
Sbjct: 239 HNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQ 298
Query: 245 HPWRYMPNQAMTPHVS 260
P + PN TPH +
Sbjct: 299 GPLKDAPNLICTPHAA 314
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 7/196 (3%)
Query: 71 SNVVSVAEDELMRILILVRNFLPGHHQVISGEW-----NVAGVAYRAYDLEGKTVGTVGC 125
++V A+ L IL L R H + G + VA A + G+T+G +G
Sbjct: 120 ASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGL 179
Query: 126 GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE 185
GR+G+ + R K F N+L++D D +E+ G + L +L D V ++ L E
Sbjct: 180 GRVGQAVALRAKAFGFNVLFYDPYLSDG-IERALGLQRVSTLQDLLFHSDCVTLHCGLNE 238
Query: 186 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP-APKD 244
+ + + +M++G +VN ARG ++D +A+ A G I G + DV +P +
Sbjct: 239 HNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQ 298
Query: 245 HPWRYMPNQAMTPHVS 260
P + PN TPH +
Sbjct: 299 GPLKDAPNLICTPHAA 314
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 7/196 (3%)
Query: 71 SNVVSVAEDELMRILILVRNFLPGHHQVISGEW-----NVAGVAYRAYDLEGKTVGTVGC 125
++V A+ L IL L R H + G + VA A + G+T+G +G
Sbjct: 117 ASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGL 176
Query: 126 GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE 185
GR+G+ + R K F N+L++D D +E+ G + L +L D V ++ L E
Sbjct: 177 GRVGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNE 235
Query: 186 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP-APKD 244
+ + + +M++G +VN ARG ++D +A+ A G I G + DV +P +
Sbjct: 236 HNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQ 295
Query: 245 HPWRYMPNQAMTPHVS 260
P + PN TPH +
Sbjct: 296 GPLKDAPNLICTPHAA 311
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 77/135 (57%), Gaps = 3/135 (2%)
Query: 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 173
++ + VG VG G IG++ +Q ++ F ++ +D + +P+LEK+ + + LD + +
Sbjct: 143 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR-NPELEKK--GYYVDSLDDLYKQ 199
Query: 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 233
D++ ++ P M + + IAKMK+ V+IVN +RG ++DT AV+ SG I GY+
Sbjct: 200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAM 259
Query: 234 DVWNPQPAPKDHPWR 248
DV+ + + W
Sbjct: 260 DVYEGEVGIFNEDWE 274
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 92/196 (46%), Gaps = 7/196 (3%)
Query: 71 SNVVSVAEDELMRILILVRNFLPGHHQVISGEW-----NVAGVAYRAYDLEGKTVGTVGC 125
++V A+ L IL L R H + G + VA A + G+T+G +G
Sbjct: 120 ASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGL 179
Query: 126 GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE 185
R+G+ + R K F N+L++D D +E+ G + L +L D V ++ L E
Sbjct: 180 ERVGQAVALRAKAFGFNVLFYDPYLSDG-IERALGLQRVSTLQDLLFHSDCVTLHCGLNE 238
Query: 186 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP-APKD 244
+ + + +M++G +VN ARG ++D +A+ A G I G + DV +P +
Sbjct: 239 HNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQ 298
Query: 245 HPWRYMPNQAMTPHVS 260
P + PN TPH +
Sbjct: 299 GPLKDAPNLICTPHAA 314
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 9/176 (5%)
Query: 98 VISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK 157
V SG++ + L+ TVG +G G IG + RL+ + L YH R +D Q E+
Sbjct: 126 VRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQ 185
Query: 158 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQ 217
G + + + D +++ PL T + + + +A ++ G L+VN RG+++D
Sbjct: 186 RLGLR-QVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEA 244
Query: 218 AVVDACSSGHIAGYSGDVWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDA 266
AV+ A G + GY+ DV+ + P D PN TPH+ G+ + A
Sbjct: 245 AVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHI-GSAVRA 299
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 9/176 (5%)
Query: 98 VISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK 157
V SG++ + L+ TVG +G G IG + RL+ + L YH R +D Q E+
Sbjct: 126 VRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQ 185
Query: 158 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQ 217
G + + + D +++ PL T + + + +A ++ G L+VN RG+++D
Sbjct: 186 RLGLR-QVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEA 244
Query: 218 AVVDACSSGHIAGYSGDVWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDA 266
AV+ A G + GY+ DV+ + P D PN TPH+ G+ + A
Sbjct: 245 AVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHI-GSAVRA 299
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 104/215 (48%), Gaps = 10/215 (4%)
Query: 71 SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGK 130
SN SVAE + +L+L+R + + G WN +A +++ GK +G +G G IG
Sbjct: 107 SNTRSVAELVIGELLLLLRGVPEANAKAHRGVWN--KLAAGSFEARGKKLGIIGYGHIGT 164
Query: 131 LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190
L + + ++D ++ +L + + L +L D+V ++ P T+
Sbjct: 165 QLGILAESLGXYVYFYD---IENKLPLGNATQVQH-LSDLLNXSDVVSLHVPENPSTKNX 220
Query: 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA----PKDHP 246
I+ K G L++N +RG ++D A+ DA +S H+AG + DV+ +PA P P
Sbjct: 221 XGAKEISLXKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSP 280
Query: 247 WRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 281
N +TPH+ G+T +AQ V L +Y
Sbjct: 281 LCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKY 315
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 2/178 (1%)
Query: 108 VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 167
VA A + G+T+G +G GR G+ + R K F +++++D D +E+ G + L
Sbjct: 143 VASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDG-IERSLGVQRVYTL 201
Query: 168 DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 227
+L + D V ++ L E + + I +M++G +VN ARG ++D +A+ A G
Sbjct: 202 QDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGR 261
Query: 228 IAGYSGDVWNPQP-APKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKG 284
I G + DV +P + P + PN TPH + + A L + R G
Sbjct: 262 IRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITG 319
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Query: 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 174
L+ TVG +G G IG + RL+ + L YH+ +D Q E+ G + + +
Sbjct: 143 LDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLR-QVACSELFASS 201
Query: 175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 234
D +++ PL T + + + +A ++ G L+VN RG+++D AV+ A G + GY+ D
Sbjct: 202 DFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAAD 261
Query: 235 VWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDA 266
V+ + P D PN TPH+ G+ + A
Sbjct: 262 VFEMEDWARADRPQQIDPALLAHPNTLFTPHI-GSAVRA 299
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Query: 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 174
L+ TVG +G G IG + RL+ + L YH+ +D Q E+ G + + +
Sbjct: 143 LDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLR-QVACSELFASS 201
Query: 175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 234
D +++ PL T + + + +A ++ G L+VN RG+++D AV+ A G + GY+ D
Sbjct: 202 DFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAAD 261
Query: 235 VWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDA 266
V+ + P D PN TPH+ G+ + A
Sbjct: 262 VFEMEDWARADRPQQIDPALLAHPNTLFTPHI-GSAVRA 299
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 16/166 (9%)
Query: 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 173
++ + VG VG G IG++ ++ ++ F ++ +D K +P+LEK+ + + LD + +
Sbjct: 143 EVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIFK-NPELEKK--GYYVDSLDDLYKQ 199
Query: 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 233
D++ ++ P M + IA+MK GV+IVN +RG ++DT AV+ SG I G+
Sbjct: 200 ADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKIFGFVM 259
Query: 234 D-------VWNPQPAPKDHPWRYM------PNQAMTPHVSGTTIDA 266
D V+N K+ P + + PN +TPH + T A
Sbjct: 260 DTYEDEVGVFNKDWEGKEFPDKRLADLIDRPNVLVTPHTAFYTTHA 305
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 9/176 (5%)
Query: 98 VISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK 157
V SG++ + L+ TVG +G G IG RL+ + L YH +D Q E+
Sbjct: 127 VRSGQFRGWQPRFYGTGLDNATVGFLGXGAIGLAXADRLQGWGATLQYHAAKALDTQTEQ 186
Query: 158 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQ 217
G + + + D +++ PL T + + + +A ++ G L+VN RG+++D
Sbjct: 187 RLGLR-QVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEA 245
Query: 218 AVVDACSSGHIAGYSGDVWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDA 266
AV+ A G + GY+ DV+ + P D PN TPH+ G+ + A
Sbjct: 246 AVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHI-GSAVRA 300
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 8/178 (4%)
Query: 108 VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 167
+A +++ GK +G +G G IG L + + ++D ++ +L + + L
Sbjct: 136 LAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYD---IENKLPLGNATQVQH-L 191
Query: 168 DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 227
+L D+V ++ P T+ I+ K G L++N +RG ++D A+ DA +S H
Sbjct: 192 SDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALADALASKH 251
Query: 228 IAGYSGDVWNPQPA----PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 281
+AG + DV+ +PA P P N +TPH+ G+T +AQ V L +Y
Sbjct: 252 LAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKY 309
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 100/206 (48%), Gaps = 19/206 (9%)
Query: 75 SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQ 134
++AE + + ++L+R+ + + V + + ++ TVG VG GRIG++ Q
Sbjct: 105 AIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMF-SKEVRNCTVGVVGLGRIGRVAAQ 163
Query: 135 RLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 194
++ D ++ + T + LD +L K DI+ ++ P ++ + +D
Sbjct: 164 IFHGMGATVIGEDVFEIKGIEDYCT----QVSLDEVLEKSDIITIHAPYIKENGAVVTRD 219
Query: 195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA--PKDHPWRYM-- 250
+ KMK G ++VN ARG ++DT+AV++A SG + GY DV + + + KD + +
Sbjct: 220 FLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLEN 279
Query: 251 ----------PNQAMTPHVSGTTIDA 266
P +TPH+ T +A
Sbjct: 280 PLFEKLVDLYPRVLITPHLGSYTDEA 305
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 110/227 (48%), Gaps = 23/227 (10%)
Query: 75 SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQ 134
++AE L L L+RN Q+ +G++ AG + +L +TVG +G G IG++ ++
Sbjct: 104 AIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGT-FIGKELGQQTVGVMGTGHIGQVAIK 162
Query: 135 RLKPFNCNLLYHDRVKMDPQLEKETGAKFEE-DLDTMLPKCDIVVVNTPLTEKTRGMFDK 193
K F ++ +D M K F+ L+ + + D++ ++ P E+ + ++
Sbjct: 163 LFKGFGAKVIAYDPYPM-----KGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINE 217
Query: 194 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP----------APK 243
MK G +++N AR ++DTQA++ SG +AG D + + + K
Sbjct: 218 AAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFK 277
Query: 244 DHPWRY---MPNQAMTPHVSGTTIDA--QLRYAAGVKDMLDRYFKGE 285
D W MPN ++PH++ T A + Y + ++ ++D KGE
Sbjct: 278 DPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFS-LQHLVDFLTKGE 323
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 20/169 (11%)
Query: 103 WNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK 162
W ++ Y+L TVG +G G IG + + ++ +D V +P+ E
Sbjct: 137 WPSNLISNEIYNL---TVGLIGVGHIGSAVAEIFSAMGAKVIAYD-VAYNPEFEPFLTYT 192
Query: 163 FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDA 222
D DT+L + DIV ++TPL T M + ++ +MKK ++N ARG ++DT A++ A
Sbjct: 193 ---DFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKA 249
Query: 223 CSSGHIAGYSGDVWNPQPAPKDH--------PWRY-----MPNQAMTPH 258
G IAG D + + H P Y MPN +TPH
Sbjct: 250 LQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPH 298
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 94/215 (43%), Gaps = 10/215 (4%)
Query: 76 VAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQR 135
VA+ + L ++R G V G W + +GK +G +G G+IG+ L R
Sbjct: 130 VADLGIALXLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASR 189
Query: 136 LKPFNCNLLYHDRVKMD--PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 193
+ F ++ Y +R + + ++ D D++ V + T+ + D
Sbjct: 190 AEAFGXSVRYWNRSTLSGVDWIAHQSPVDLARD-------SDVLAVCVAASAATQNIVDA 242
Query: 194 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ 253
+ + ++VN ARG ++D A+++A SG IAG DV+ +PA + + PN
Sbjct: 243 SLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSE-FHTTPNT 301
Query: 254 AMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
+ PH T++ + V L +F GE P
Sbjct: 302 VLXPHQGSATVETRXAXGKLVLANLAAHFAGEKAP 336
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 96/211 (45%), Gaps = 9/211 (4%)
Query: 76 VAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQR 135
VA+ + IL ++R V G W G GK VG +G GRIG + +R
Sbjct: 124 VADLAIGLILAVLRRICECDKYVRRGAWKF-GDFKLTTKFSGKRVGIIGLGRIGLAVAER 182
Query: 136 LKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR 195
+ F+C + Y R K + T + + + DI+VV PLT +T + +++
Sbjct: 183 AEAFDCPISYFSRSK-----KPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREV 237
Query: 196 IAKM-KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQA 254
I + KGVLI N RG +D +V A G + G DV+ +P + + + N
Sbjct: 238 IDALGPKGVLI-NIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFG-LENVV 295
Query: 255 MTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
+ PHV T++ + A V L+ +F G+
Sbjct: 296 LLPHVGSGTVETRKVMADLVVGNLEAHFSGK 326
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 2/176 (1%)
Query: 108 VAYRAYDLEGKTVGTVGCGRIGKLLLQR-LKPFNCNLLYHDRVKMDPQLEKETGAKFEED 166
+ A++ G +G VG G I K + ++ + L+Y+D D + EK GA+ +
Sbjct: 154 IGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDS 213
Query: 167 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 226
L+ + + D V V+ P + T + D+ A MK G IVN ARG ++ A++ A SG
Sbjct: 214 LEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG 273
Query: 227 HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYF 282
+ DV +P M + +T H+ G I+ + +DR+
Sbjct: 274 KLLSAGLDVHEFEPQVSKELIE-MKHVTLTTHIGGVAIETFHEFERLTMTNIDRFL 328
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 2/176 (1%)
Query: 108 VAYRAYDLEGKTVGTVGCGRIGKLLLQR-LKPFNCNLLYHDRVKMDPQLEKETGAKFEED 166
+ A++ G +G VG G I K + ++ + L+Y+D D + EK GA+ +
Sbjct: 154 IGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDS 213
Query: 167 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 226
L+ + + D V V+ P + T + D+ A MK G IVN ARG ++ A++ A SG
Sbjct: 214 LEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG 273
Query: 227 HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYF 282
+ DV +P M + +T H+ G I+ + +DR+
Sbjct: 274 KLLSAGLDVHEFEPQVSKELIE-MKHVTLTTHIGGVAIETFHEFERLTMTNIDRFL 328
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 2/176 (1%)
Query: 108 VAYRAYDLEGKTVGTVGCGRIGKLLLQR-LKPFNCNLLYHDRVKMDPQLEKETGAKFEED 166
+ A++ G +G VG G I K + ++ + L+Y+D D + EK GA+ +
Sbjct: 154 IGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDS 213
Query: 167 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 226
L+ + + D V V+ P + T + D+ A MK G IVN ARG ++ A++ A SG
Sbjct: 214 LEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG 273
Query: 227 HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYF 282
+ DV +P M + +T H+ G I+ + +DR+
Sbjct: 274 KLLSAGLDVHEFEPNVSKELIE-MKHVTLTTHIGGVAIETFHEFERLTMTNIDRFL 328
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 4/165 (2%)
Query: 75 SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQ 134
SVAE IL LV+ +V ++ A +L T+G +G GRIG +
Sbjct: 100 SVAEHTFAXILTLVKRLKRIEDRVKKLNFS-QDSEILARELNRLTLGVIGTGRIGSRVAX 158
Query: 135 RLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 194
F +L +D VK + KE G + LD +L + D++ ++ P T++T +++
Sbjct: 159 YGLAFGXKVLCYDVVKREDL--KEKGCVYT-SLDELLKESDVISLHVPYTKETHHXINEE 215
Query: 195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ 239
RI+ K GV ++N ARG ++DT A+ A G +G DV+ +
Sbjct: 216 RISLXKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDE 260
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 1/145 (0%)
Query: 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 174
L+G+T+G G G+IG+L+ + F N+L R + + + G E D + +
Sbjct: 158 LKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGR-ENSKERARADGFAVAESKDALFEQS 216
Query: 175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 234
D++ V+ L ++TR + + +MK L VN +R +++ +V A + G + D
Sbjct: 217 DVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAID 276
Query: 235 VWNPQPAPKDHPWRYMPNQAMTPHV 259
V+ +P + H M N TPH+
Sbjct: 277 VFETEPILQGHTLLRMENCICTPHI 301
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 4/160 (2%)
Query: 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 173
+L GKT+G VG GRIG + +L +D + + + EK L+ +L
Sbjct: 139 ELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAKAV--SLEELLKN 196
Query: 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 233
D++ ++ +++ + + D + MK V+IVN +R ++ +A++D G + Y+
Sbjct: 197 SDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYAT 256
Query: 234 DVWNPQPAPKDHPWRYMPNQ--AMTPHVSGTTIDAQLRYA 271
DV+ +P ++ + ++ +T H+ T +AQ R A
Sbjct: 257 DVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVA 296
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 6/157 (3%)
Query: 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEEDLDTML 171
Y E +VG G G +G + + L+ + L R + P +E G E+L L
Sbjct: 135 YTREEFSVGIXGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVG---REELRAFL 191
Query: 172 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 231
+ +++ P T +T G+ + + + ++ G ++N ARG + ++ A SG + G
Sbjct: 192 NQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGA 251
Query: 232 SGDVWNPQPAPKDHP-WRYMPNQAMTPHVSGTTIDAQ 267
DV++ +P P++ P WR+ P A TPH++ T A+
Sbjct: 252 XLDVFSQEPLPQESPLWRH-PRVAXTPHIAAVTRPAE 287
>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|B Chain B, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|C Chain C, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|D Chain D, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
Length = 365
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 3/148 (2%)
Query: 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 174
+ G +G VG G +GK L + L F + D LE E G + L+ +L K
Sbjct: 174 IAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSXLE-ENGVE-PASLEDVLTKS 231
Query: 175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 234
D + V +T + + + + ++G + +R ++D A+ A SSGHI S D
Sbjct: 232 DFIFVVAAVTSENKRFLGAEAFSSXRRGAAFILLSRADVVDFDALXAAVSSGHIVAAS-D 290
Query: 235 VWNPQPAPKDHPWRYMPNQAMTPHVSGT 262
V+ +P P DHP R + + H +G
Sbjct: 291 VYPEEPLPLDHPVRSLKGFIRSAHRAGA 318
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 12/155 (7%)
Query: 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE-----DLDT 169
L+G+T+ +G G IG+ + K F +L R A F++ L+
Sbjct: 138 LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSR-------SGRERAGFDQVYQLPALNK 190
Query: 170 MLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 229
ML + D++V P T +T +F R K G ++ N RG ++ ++ A +G +
Sbjct: 191 MLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLG 250
Query: 230 GYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTI 264
DV+ +P P D P PN +TPH S +
Sbjct: 251 MAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSF 285
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
Length = 380
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 153 PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK----TRGMFDKDRIAKMKKGVLIVNN 208
P+ +E +F L+ +L + D++ ++TPL TR + D+ R+A ++ G +VN
Sbjct: 148 PRQAREPDGEFVS-LERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNA 206
Query: 209 ARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQL 268
+RGA++D QA+ G + DVW + P+ P TPH++G +++ +L
Sbjct: 207 SRGAVVDNQALRRLLEGGADLEVALDVWEGE--PQADPELAARCLIATPHIAGYSLEGKL 264
Query: 269 RYAAGV 274
R A +
Sbjct: 265 RGTAQI 270
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 11/161 (6%)
Query: 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP 172
+ L +T+G VG G +G L RL+ L D P+ + F LD ++
Sbjct: 115 FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCD----PPRAARGDEGDFRT-LDELVQ 169
Query: 173 KCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 228
+ D++ +TPL + KT + D+ I ++K G +++N RG ++D A++ ++G
Sbjct: 170 EADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQP 229
Query: 229 AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR 269
DVW +P + T H++G T++ + R
Sbjct: 230 LSVVLDVWEGEPDLNVALLEAV--DIGTSHIAGYTLEGKAR 268
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 234
+ +V PLT T +F + + K+ +++N RG +DT A++ A ++ + D
Sbjct: 193 NFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALD 252
Query: 235 VWNPQPAPKDHPWRYMPNQAMTPHVSG 261
V P+P P DHP + +TPH+SG
Sbjct: 253 VTEPEPLPTDHPLWQRDDVLITPHISG 279
>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
pdb|3GVX|B Chain B, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
Length = 290
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 12/188 (6%)
Query: 74 VSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLL 133
+SVAE +L +N L + +G + + L GK +G +G G IG+ +
Sbjct: 83 ISVAEHAFALLLAHAKNILENNELXKAGIFRQSPTTL----LYGKALGILGYGGIGRRVA 138
Query: 134 QRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 193
K F ++ + R +D ++ E + + D V++ PLT+KTRG +
Sbjct: 139 HLAKAFGXRVIAYTRSSVDQNVDV-----ISESPADLFRQSDFVLIAIPLTDKTRGXVNS 193
Query: 194 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ 253
+A +K + IVN AR ++ + Y DVW +P + R N
Sbjct: 194 RLLANARKNLTIVNVARADVVSKPDXIGFLKERSDVWYLSDVWWNEPEITETNLR---NA 250
Query: 254 AMTPHVSG 261
++PHV+G
Sbjct: 251 ILSPHVAG 258
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 7/148 (4%)
Query: 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 174
++G+ V +G G IG + + L + R KE +F L+ L +
Sbjct: 122 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP------KEGPWRFTNSLEEALREA 175
Query: 175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 234
V PL + TRG+ +A + + VN R ++D V+ ++ D
Sbjct: 176 RAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASD 235
Query: 235 V-WNPQPAPKDHPWRYMPNQAMTPHVSG 261
V W KD + +PN TP V+G
Sbjct: 236 VWWGRNDFAKDAEFFSLPNVVATPWVAG 263
>pdb|2RJO|A Chain A, Crystal Structure Of Twin-Arginine Translocation Pathway
Signal Protein From Burkholderia Phytofirmans
Length = 332
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 182 PLTEK---TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP 238
PLT + +G+ D + + G L++N D + +V+ACS Y +WN
Sbjct: 40 PLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVEACSKA--GAYVTTIWN- 96
Query: 239 QPAPKD-HPWRYMPN 252
PKD HPW Y PN
Sbjct: 97 --KPKDLHPWDYNPN 109
>pdb|2PSO|A Chain A, Human Stard13 (Dlc2) Lipid Transfer And Protein
Localization Domain
pdb|2PSO|B Chain B, Human Stard13 (Dlc2) Lipid Transfer And Protein
Localization Domain
pdb|2PSO|C Chain C, Human Stard13 (Dlc2) Lipid Transfer And Protein
Localization Domain
Length = 237
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 172 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 226
P D VV+ T T+ +GM ++ + ++ R +MD+Q +++ C SG
Sbjct: 132 PSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSG 186
>pdb|3EDH|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease
Domain In Complex With Partially Bound Dmso
Length = 201
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 17/68 (25%)
Query: 149 VKMDPQLEKETGAKFEED---------------LDTMLPKCDIVVVNTPLTEKTRGMFDK 193
+KM+PQ + G ++ D LDT++PK ++ V P+ ++TR K
Sbjct: 130 LKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTR--LSK 187
Query: 194 DRIAKMKK 201
IA+ +K
Sbjct: 188 GDIAQARK 195
>pdb|3EDG|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease
Domain
Length = 202
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 17/68 (25%)
Query: 149 VKMDPQLEKETGAKFEED---------------LDTMLPKCDIVVVNTPLTEKTRGMFDK 193
+KM+PQ + G ++ D LDT++PK ++ V P+ ++TR K
Sbjct: 131 LKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTR--LSK 188
Query: 194 DRIAKMKK 201
IA+ +K
Sbjct: 189 GDIAQARK 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,163,888
Number of Sequences: 62578
Number of extensions: 323046
Number of successful extensions: 752
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 620
Number of HSP's gapped (non-prelim): 65
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)