Query 021995
Match_columns 304
No_of_seqs 310 out of 2350
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 07:12:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021995.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021995hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0111 SerA Phosphoglycerate 100.0 1.1E-66 2.4E-71 485.8 27.8 259 22-287 52-311 (324)
2 PLN03139 formate dehydrogenase 100.0 8E-66 1.7E-70 489.2 30.3 277 24-304 109-386 (386)
3 PRK15409 bifunctional glyoxyla 100.0 6.8E-65 1.5E-69 475.1 29.0 265 17-287 47-314 (323)
4 PRK07574 formate dehydrogenase 100.0 3.3E-64 7.2E-69 478.4 29.2 275 23-301 101-376 (385)
5 COG1052 LdhA Lactate dehydroge 100.0 3.3E-64 7.1E-69 468.9 27.9 259 23-287 53-317 (324)
6 PRK06487 glycerate dehydrogena 100.0 6.4E-64 1.4E-68 468.0 28.2 262 18-290 48-316 (317)
7 PRK08410 2-hydroxyacid dehydro 100.0 1.8E-63 3.8E-68 463.9 27.8 258 18-285 45-310 (311)
8 PRK06932 glycerate dehydrogena 100.0 1.9E-62 4E-67 457.4 27.0 258 18-285 47-313 (314)
9 PRK13243 glyoxylate reductase; 100.0 9.7E-62 2.1E-66 456.1 27.9 259 22-287 53-317 (333)
10 PRK11790 D-3-phosphoglycerate 100.0 2.1E-61 4.7E-66 464.6 28.3 264 20-293 59-328 (409)
11 PLN02928 oxidoreductase family 100.0 1.6E-60 3.4E-65 449.8 28.5 262 18-288 64-341 (347)
12 TIGR01327 PGDH D-3-phosphoglyc 100.0 3.3E-60 7.2E-65 469.7 28.3 267 20-294 46-314 (525)
13 PLN02306 hydroxypyruvate reduc 100.0 5.2E-60 1.1E-64 450.5 28.5 265 22-291 70-354 (386)
14 KOG0068 D-3-phosphoglycerate d 100.0 3.7E-60 8E-65 429.6 21.7 266 19-292 52-321 (406)
15 PRK13581 D-3-phosphoglycerate 100.0 2.8E-59 6E-64 463.2 27.3 265 20-293 48-314 (526)
16 KOG0069 Glyoxylate/hydroxypyru 100.0 1.3E-57 2.9E-62 420.9 25.3 251 31-287 80-330 (336)
17 PRK12480 D-lactate dehydrogena 100.0 1.2E-57 2.6E-62 427.6 25.0 261 18-287 48-325 (330)
18 PRK15469 ghrA bifunctional gly 100.0 8.2E-57 1.8E-61 418.7 25.2 260 29-298 50-311 (312)
19 PRK08605 D-lactate dehydrogena 100.0 3.2E-56 7E-61 418.7 26.7 260 20-287 51-327 (332)
20 PRK06436 glycerate dehydrogena 100.0 1.6E-55 3.5E-60 408.1 27.1 245 31-296 45-291 (303)
21 PRK15438 erythronate-4-phospha 100.0 2.4E-54 5.1E-59 409.3 25.2 236 20-287 43-282 (378)
22 PRK00257 erythronate-4-phospha 100.0 7.8E-54 1.7E-58 406.8 25.8 236 20-286 43-282 (381)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 2.3E-48 5.1E-53 335.2 13.2 178 81-260 1-178 (178)
24 KOG0067 Transcription factor C 100.0 1.3E-28 2.9E-33 226.3 11.9 256 28-295 88-350 (435)
25 PTZ00075 Adenosylhomocysteinas 99.9 2.3E-21 5.1E-26 187.5 16.9 156 61-244 214-369 (476)
26 TIGR02853 spore_dpaA dipicolin 99.8 2.6E-19 5.6E-24 165.3 12.4 157 21-212 77-243 (287)
27 PLN02494 adenosylhomocysteinas 99.7 2.8E-16 6E-21 152.0 9.8 120 114-239 251-373 (477)
28 TIGR00936 ahcY adenosylhomocys 99.6 2.5E-15 5.5E-20 144.1 10.5 120 114-238 192-312 (406)
29 PF03446 NAD_binding_2: NAD bi 99.6 3.6E-15 7.8E-20 126.6 7.0 115 118-234 2-117 (163)
30 PRK08306 dipicolinate synthase 99.6 4.2E-14 9E-19 131.3 14.0 152 26-211 83-243 (296)
31 PRK13403 ketol-acid reductoiso 99.6 9.2E-15 2E-19 135.3 9.1 94 113-208 12-105 (335)
32 COG2084 MmsB 3-hydroxyisobutyr 99.5 2.2E-14 4.7E-19 131.4 10.0 115 118-234 1-118 (286)
33 PF00389 2-Hacid_dh: D-isomer 99.5 2.6E-13 5.6E-18 111.2 9.0 59 18-80 41-101 (133)
34 TIGR01505 tartro_sem_red 2-hyd 99.4 5.5E-13 1.2E-17 123.3 9.9 111 119-229 1-113 (291)
35 PRK11559 garR tartronate semia 99.4 6.7E-13 1.5E-17 122.9 10.0 112 118-229 3-116 (296)
36 PRK05476 S-adenosyl-L-homocyst 99.4 9.6E-13 2.1E-17 127.1 11.3 141 60-221 171-312 (425)
37 PRK12490 6-phosphogluconate de 99.4 9.8E-13 2.1E-17 122.3 10.5 113 119-234 2-117 (299)
38 PRK15461 NADH-dependent gamma- 99.4 1.1E-12 2.3E-17 121.9 10.5 115 118-234 2-118 (296)
39 PF00670 AdoHcyase_NAD: S-aden 99.4 1.3E-12 2.8E-17 110.0 8.2 102 113-219 19-121 (162)
40 PLN02350 phosphogluconate dehy 99.4 5.6E-12 1.2E-16 124.1 12.4 121 119-240 8-138 (493)
41 PRK09599 6-phosphogluconate de 99.4 3.9E-12 8.5E-17 118.3 10.5 114 118-234 1-117 (301)
42 PRK15059 tartronate semialdehy 99.3 2.8E-11 6E-16 112.2 10.9 113 119-234 2-116 (292)
43 PLN02256 arogenate dehydrogena 99.2 1.9E-10 4.2E-15 107.1 15.5 109 115-225 34-143 (304)
44 cd00401 AdoHcyase S-adenosyl-L 99.2 3.5E-11 7.6E-16 116.0 10.5 104 113-221 198-302 (413)
45 KOG0409 Predicted dehydrogenas 99.2 2.4E-11 5.2E-16 110.5 8.6 118 115-234 33-153 (327)
46 PTZ00142 6-phosphogluconate de 99.2 6E-11 1.3E-15 116.5 11.3 119 118-237 2-129 (470)
47 TIGR00872 gnd_rel 6-phosphoglu 99.2 6E-11 1.3E-15 110.3 10.5 114 118-235 1-117 (298)
48 PLN02712 arogenate dehydrogena 99.2 5E-11 1.1E-15 121.7 10.1 114 111-226 363-477 (667)
49 PRK05479 ketol-acid reductoiso 99.2 4.5E-11 9.7E-16 112.0 8.8 96 113-211 13-109 (330)
50 PLN02858 fructose-bisphosphate 99.2 6.7E-11 1.5E-15 128.8 11.3 120 116-235 3-124 (1378)
51 TIGR01692 HIBADH 3-hydroxyisob 99.2 8.4E-11 1.8E-15 108.7 9.0 111 122-234 1-113 (288)
52 TIGR00873 gnd 6-phosphoglucona 99.2 2.8E-10 6.1E-15 111.8 12.3 111 119-230 1-119 (467)
53 PLN02858 fructose-bisphosphate 99.1 1.7E-10 3.8E-15 125.6 10.5 116 117-234 324-443 (1378)
54 PRK08655 prephenate dehydrogen 99.1 1.4E-09 3E-14 106.3 14.1 134 118-259 1-137 (437)
55 PRK07502 cyclohexadienyl dehyd 99.1 1.5E-09 3.2E-14 101.3 13.4 146 116-267 5-160 (307)
56 PRK05225 ketol-acid reductoiso 99.0 3.1E-10 6.6E-15 109.3 6.2 107 102-212 21-133 (487)
57 PLN02712 arogenate dehydrogena 99.0 3.5E-09 7.5E-14 108.3 13.5 110 114-225 49-159 (667)
58 PRK07417 arogenate dehydrogena 99.0 2.2E-09 4.8E-14 98.8 10.9 94 118-213 1-95 (279)
59 PF07991 IlvN: Acetohydroxy ac 99.0 5.1E-10 1.1E-14 94.0 6.0 95 115-212 2-97 (165)
60 COG1023 Gnd Predicted 6-phosph 99.0 3.1E-09 6.7E-14 94.0 9.9 118 118-238 1-121 (300)
61 TIGR00465 ilvC ketol-acid redu 99.0 2E-09 4.4E-14 100.7 9.3 97 115-214 1-98 (314)
62 PF03807 F420_oxidored: NADP o 99.0 5.7E-10 1.2E-14 85.9 4.4 90 119-211 1-96 (96)
63 PLN02688 pyrroline-5-carboxyla 99.0 5.8E-09 1.3E-13 95.0 11.5 103 118-224 1-108 (266)
64 PRK08507 prephenate dehydrogen 98.9 8.8E-09 1.9E-13 94.5 12.3 100 118-225 1-103 (275)
65 COG0287 TyrA Prephenate dehydr 98.9 1.1E-08 2.3E-13 94.2 12.7 137 117-261 3-147 (279)
66 PLN02545 3-hydroxybutyryl-CoA 98.9 9.6E-09 2.1E-13 95.2 12.2 103 118-224 5-132 (295)
67 cd01075 NAD_bind_Leu_Phe_Val_D 98.9 1.4E-08 3.1E-13 89.0 12.6 110 112-229 23-134 (200)
68 COG0499 SAM1 S-adenosylhomocys 98.9 6.9E-09 1.5E-13 96.5 9.2 111 114-229 206-318 (420)
69 PRK06545 prephenate dehydrogen 98.9 2.7E-08 5.8E-13 94.9 13.5 136 118-261 1-150 (359)
70 PRK07066 3-hydroxybutyryl-CoA 98.9 2E-08 4.4E-13 94.2 12.1 105 118-224 8-132 (321)
71 PRK15182 Vi polysaccharide bio 98.9 1.9E-08 4E-13 98.0 12.1 135 118-254 7-172 (425)
72 PRK08293 3-hydroxybutyryl-CoA 98.9 5E-08 1.1E-12 90.2 13.9 140 118-269 4-168 (287)
73 PRK07530 3-hydroxybutyryl-CoA 98.9 5.3E-08 1.2E-12 90.1 13.9 103 118-224 5-132 (292)
74 PRK09260 3-hydroxybutyryl-CoA 98.8 7.5E-09 1.6E-13 95.6 7.9 115 118-236 2-141 (288)
75 PRK14619 NAD(P)H-dependent gly 98.8 9.2E-09 2E-13 96.0 8.4 83 116-213 3-86 (308)
76 PRK12491 pyrroline-5-carboxyla 98.8 6.9E-09 1.5E-13 95.3 7.4 103 118-224 3-110 (272)
77 TIGR00518 alaDH alanine dehydr 98.8 2.5E-08 5.3E-13 95.5 11.1 151 114-283 164-325 (370)
78 PRK14618 NAD(P)H-dependent gly 98.8 1.4E-08 3.1E-13 95.5 9.1 103 117-225 4-123 (328)
79 KOG0023 Alcohol dehydrogenase, 98.8 3.3E-09 7.2E-14 97.4 4.7 159 116-304 181-347 (360)
80 PRK14806 bifunctional cyclohex 98.8 3.9E-08 8.4E-13 102.0 13.2 137 118-261 4-153 (735)
81 PRK11064 wecC UDP-N-acetyl-D-m 98.8 2.8E-08 6E-13 96.6 10.7 107 118-225 4-135 (415)
82 PRK11199 tyrA bifunctional cho 98.8 7.4E-08 1.6E-12 92.4 13.1 121 73-222 67-188 (374)
83 cd01065 NAD_bind_Shikimate_DH 98.8 3.8E-08 8.1E-13 82.1 9.4 111 114-229 16-134 (155)
84 TIGR01724 hmd_rel H2-forming N 98.8 1.1E-07 2.5E-12 88.0 13.2 89 129-218 32-125 (341)
85 TIGR03026 NDP-sugDHase nucleot 98.8 1.1E-07 2.3E-12 92.3 13.8 105 118-223 1-134 (411)
86 PRK08818 prephenate dehydrogen 98.8 1.3E-07 2.7E-12 90.4 14.0 122 115-258 2-130 (370)
87 KOG1370 S-adenosylhomocysteine 98.8 2.1E-08 4.5E-13 91.5 8.2 94 115-213 212-305 (434)
88 COG1064 AdhP Zn-dependent alco 98.8 7.2E-09 1.6E-13 97.1 5.2 157 116-304 166-330 (339)
89 PRK09287 6-phosphogluconate de 98.7 6.3E-08 1.4E-12 95.0 11.1 109 128-237 1-117 (459)
90 PRK13302 putative L-aspartate 98.7 4.3E-08 9.2E-13 90.0 9.3 109 116-229 5-118 (271)
91 PRK07819 3-hydroxybutyryl-CoA 98.7 7.4E-08 1.6E-12 89.1 10.8 100 118-218 6-130 (286)
92 PRK07679 pyrroline-5-carboxyla 98.7 3.7E-08 8.1E-13 90.6 8.6 105 116-224 2-112 (279)
93 PRK06129 3-hydroxyacyl-CoA deh 98.7 1.9E-07 4.2E-12 87.1 13.4 140 118-269 3-166 (308)
94 PF01488 Shikimate_DH: Shikima 98.7 1.1E-08 2.3E-13 84.3 4.3 96 114-212 9-112 (135)
95 PF10727 Rossmann-like: Rossma 98.7 9.3E-09 2E-13 83.7 3.6 92 116-209 9-104 (127)
96 PRK00094 gpsA NAD(P)H-dependen 98.7 3.1E-08 6.6E-13 92.6 7.5 95 118-214 2-110 (325)
97 PRK14194 bifunctional 5,10-met 98.7 5.5E-08 1.2E-12 90.0 8.5 135 111-284 153-288 (301)
98 PRK05808 3-hydroxybutyryl-CoA 98.7 3.9E-07 8.5E-12 83.9 13.9 104 118-224 4-131 (282)
99 TIGR00561 pntA NAD(P) transhyd 98.7 1.6E-07 3.4E-12 92.8 11.5 184 12-210 60-285 (511)
100 PRK06035 3-hydroxyacyl-CoA deh 98.7 3.3E-07 7.2E-12 84.8 13.1 104 118-224 4-134 (291)
101 PRK15057 UDP-glucose 6-dehydro 98.7 1.9E-07 4.2E-12 89.9 11.4 129 118-255 1-160 (388)
102 PRK07531 bifunctional 3-hydrox 98.6 1.1E-07 2.4E-12 94.4 9.8 106 118-225 5-130 (495)
103 cd01080 NAD_bind_m-THF_DH_Cycl 98.6 1.1E-07 2.4E-12 81.2 7.9 89 114-230 41-130 (168)
104 PRK08268 3-hydroxy-acyl-CoA de 98.6 3.9E-07 8.5E-12 90.7 12.9 115 118-237 8-147 (507)
105 PRK06130 3-hydroxybutyryl-CoA 98.6 6E-07 1.3E-11 83.7 13.5 105 118-224 5-128 (311)
106 PRK07680 late competence prote 98.6 1.1E-07 2.4E-12 87.1 7.6 102 119-224 2-109 (273)
107 PRK06476 pyrroline-5-carboxyla 98.6 1.2E-07 2.6E-12 86.2 7.3 102 119-226 2-108 (258)
108 KOG2380 Prephenate dehydrogena 98.6 3.1E-07 6.7E-12 85.1 9.9 142 116-262 51-193 (480)
109 PRK14189 bifunctional 5,10-met 98.6 6.5E-07 1.4E-11 82.3 12.1 119 112-272 153-272 (285)
110 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.6 3.3E-07 7.2E-12 91.1 10.3 116 117-237 5-145 (503)
111 PRK09424 pntA NAD(P) transhydr 98.6 3.4E-07 7.3E-12 90.7 10.3 183 13-209 62-285 (509)
112 PF01210 NAD_Gly3P_dh_N: NAD-d 98.5 1.3E-07 2.9E-12 79.6 6.1 92 119-212 1-106 (157)
113 PRK14179 bifunctional 5,10-met 98.5 1.2E-06 2.6E-11 80.6 11.8 129 111-281 152-281 (284)
114 PRK14188 bifunctional 5,10-met 98.5 3.5E-07 7.6E-12 84.7 8.2 79 112-212 153-233 (296)
115 PRK11880 pyrroline-5-carboxyla 98.5 3.2E-07 6.8E-12 83.7 7.7 101 118-224 3-107 (267)
116 PRK12557 H(2)-dependent methyl 98.5 9E-07 2E-11 83.8 9.8 95 129-224 32-132 (342)
117 COG0059 IlvC Ketol-acid reduct 98.4 6.1E-07 1.3E-11 82.1 7.8 90 114-205 15-105 (338)
118 COG0345 ProC Pyrroline-5-carbo 98.4 8.4E-07 1.8E-11 80.9 8.7 99 118-224 2-108 (266)
119 PRK05472 redox-sensing transcr 98.4 8.5E-08 1.8E-12 84.9 2.1 134 72-225 59-201 (213)
120 PRK06928 pyrroline-5-carboxyla 98.4 1.1E-06 2.5E-11 80.8 9.2 103 118-224 2-111 (277)
121 COG2085 Predicted dinucleotide 98.4 1.1E-06 2.4E-11 76.9 7.8 90 118-211 2-95 (211)
122 PRK13304 L-aspartate dehydroge 98.4 1.2E-06 2.7E-11 80.1 8.2 107 118-229 2-115 (265)
123 PRK07634 pyrroline-5-carboxyla 98.4 1.5E-06 3.3E-11 78.0 8.7 106 116-226 3-114 (245)
124 PRK14175 bifunctional 5,10-met 98.3 1.5E-06 3.2E-11 80.1 8.1 80 112-212 153-233 (286)
125 TIGR01035 hemA glutamyl-tRNA r 98.3 8.5E-07 1.8E-11 86.3 6.8 96 114-212 177-280 (417)
126 cd05213 NAD_bind_Glutamyl_tRNA 98.3 1.2E-06 2.5E-11 82.1 7.4 94 115-210 176-274 (311)
127 COG0362 Gnd 6-phosphogluconate 98.3 8.6E-06 1.9E-10 77.1 13.0 158 118-287 4-169 (473)
128 PF01262 AlaDh_PNT_C: Alanine 98.3 5E-07 1.1E-11 77.0 4.0 96 114-209 17-139 (168)
129 cd05191 NAD_bind_amino_acid_DH 98.3 3.9E-06 8.4E-11 63.5 8.3 66 114-209 20-86 (86)
130 PLN00203 glutamyl-tRNA reducta 98.3 1.5E-06 3.3E-11 86.5 7.0 96 114-212 263-372 (519)
131 PRK00045 hemA glutamyl-tRNA re 98.3 1.5E-06 3.2E-11 84.7 6.8 94 114-210 179-281 (423)
132 PRK06522 2-dehydropantoate 2-r 98.3 5.9E-06 1.3E-10 76.3 10.5 108 118-229 1-119 (304)
133 TIGR01915 npdG NADPH-dependent 98.3 2.4E-06 5.1E-11 75.9 7.1 94 118-214 1-106 (219)
134 PF02737 3HCDH_N: 3-hydroxyacy 98.2 1.9E-06 4.1E-11 74.4 6.1 103 119-224 1-127 (180)
135 cd05311 NAD_bind_2_malic_enz N 98.2 2.3E-05 4.9E-10 70.1 13.1 131 113-260 21-168 (226)
136 PRK08229 2-dehydropantoate 2-r 98.2 5.4E-06 1.2E-10 78.2 9.0 107 118-229 3-126 (341)
137 PF03721 UDPG_MGDP_dh_N: UDP-g 98.2 2.5E-06 5.5E-11 74.0 5.6 137 118-254 1-170 (185)
138 PRK12921 2-dehydropantoate 2-r 98.2 1E-05 2.2E-10 74.9 9.9 108 118-229 1-121 (305)
139 PRK06141 ornithine cyclodeamin 98.2 6.8E-06 1.5E-10 77.0 8.6 101 116-223 124-232 (314)
140 PF02153 PDH: Prephenate dehyd 98.2 1.8E-05 3.9E-10 72.1 10.7 125 132-260 1-133 (258)
141 PRK14190 bifunctional 5,10-met 98.1 2.6E-05 5.7E-10 71.8 11.4 124 111-276 152-276 (284)
142 PF02882 THF_DHG_CYH_C: Tetrah 98.1 9.6E-06 2.1E-10 68.6 7.8 81 112-213 31-112 (160)
143 PRK10792 bifunctional 5,10-met 98.1 1.3E-05 2.8E-10 73.8 9.1 80 112-212 154-234 (285)
144 PTZ00431 pyrroline carboxylate 98.1 1E-05 2.2E-10 73.8 7.7 97 117-224 3-103 (260)
145 PRK00258 aroE shikimate 5-dehy 98.1 1.1E-05 2.3E-10 74.4 7.9 97 113-209 119-221 (278)
146 cd05212 NAD_bind_m-THF_DH_Cycl 98.1 3.1E-05 6.6E-10 64.2 9.7 80 112-212 23-103 (140)
147 PRK14176 bifunctional 5,10-met 98.1 1.3E-05 2.9E-10 73.7 8.1 79 112-211 159-238 (287)
148 PRK14178 bifunctional 5,10-met 98.1 1.2E-05 2.5E-10 73.9 7.6 80 112-212 147-227 (279)
149 PRK13940 glutamyl-tRNA reducta 98.1 1.8E-05 4E-10 76.8 9.4 91 114-209 178-273 (414)
150 PRK14192 bifunctional 5,10-met 98.1 1.6E-05 3.5E-10 73.4 8.6 80 112-212 154-234 (283)
151 PRK14191 bifunctional 5,10-met 98.1 1.1E-05 2.3E-10 74.3 7.3 123 112-276 152-275 (285)
152 cd01079 NAD_bind_m-THF_DH NAD 98.0 2.8E-05 6E-10 67.6 9.0 90 112-210 57-157 (197)
153 COG0686 Ald Alanine dehydrogen 98.0 1.1E-05 2.4E-10 74.3 6.7 95 114-209 165-268 (371)
154 PRK14169 bifunctional 5,10-met 98.0 7.3E-05 1.6E-09 68.7 12.1 122 112-275 151-273 (282)
155 TIGR00507 aroE shikimate 5-deh 98.0 2.8E-05 6E-10 71.3 8.7 110 114-228 114-231 (270)
156 TIGR02371 ala_DH_arch alanine 98.0 2.4E-05 5.3E-10 73.7 8.5 89 117-211 128-224 (325)
157 PRK14170 bifunctional 5,10-met 98.0 3.6E-05 7.7E-10 70.8 9.2 127 111-279 151-278 (284)
158 PLN02353 probable UDP-glucose 98.0 0.00015 3.3E-09 71.6 14.3 137 118-255 2-176 (473)
159 cd01078 NAD_bind_H4MPT_DH NADP 98.0 1.7E-05 3.7E-10 68.9 6.5 97 113-213 24-133 (194)
160 COG0373 HemA Glutamyl-tRNA red 97.9 2.1E-05 4.5E-10 75.8 7.3 96 114-212 175-277 (414)
161 PLN02516 methylenetetrahydrofo 97.9 0.00016 3.5E-09 67.0 12.4 135 111-282 161-297 (299)
162 PRK14177 bifunctional 5,10-met 97.9 4.4E-05 9.5E-10 70.2 8.3 81 111-212 153-234 (284)
163 PRK14183 bifunctional 5,10-met 97.9 4.5E-05 9.7E-10 70.1 8.0 80 112-212 152-232 (281)
164 COG0240 GpsA Glycerol-3-phosph 97.9 3.2E-05 7E-10 72.2 7.2 101 118-220 2-116 (329)
165 PRK14166 bifunctional 5,10-met 97.9 4.8E-05 1E-09 69.9 8.2 80 112-212 152-232 (282)
166 PRK14173 bifunctional 5,10-met 97.9 5.1E-05 1.1E-09 69.9 8.3 130 112-280 150-280 (287)
167 KOG2653 6-phosphogluconate deh 97.9 0.00017 3.7E-09 67.5 11.7 159 118-287 7-173 (487)
168 PRK14186 bifunctional 5,10-met 97.9 5.2E-05 1.1E-09 70.2 8.3 127 112-276 153-280 (297)
169 PRK14172 bifunctional 5,10-met 97.9 7.6E-05 1.7E-09 68.5 9.2 115 112-269 153-268 (278)
170 PRK14180 bifunctional 5,10-met 97.9 5.7E-05 1.2E-09 69.4 8.2 79 112-211 153-232 (282)
171 PRK14187 bifunctional 5,10-met 97.8 6.3E-05 1.4E-09 69.5 8.3 80 112-212 155-235 (294)
172 TIGR01546 GAPDH-II_archae glyc 97.8 5.7E-05 1.2E-09 71.2 8.1 87 120-209 1-108 (333)
173 PRK14982 acyl-ACP reductase; P 97.8 5.9E-05 1.3E-09 71.3 8.2 100 112-216 150-253 (340)
174 COG0190 FolD 5,10-methylene-te 97.8 0.00015 3.3E-09 66.3 10.4 119 112-272 151-270 (283)
175 PF13241 NAD_binding_7: Putati 97.8 4.2E-05 9.2E-10 59.8 6.0 87 114-209 4-91 (103)
176 PRK14620 NAD(P)H-dependent gly 97.8 4.9E-05 1.1E-09 71.4 7.5 93 118-212 1-109 (326)
177 TIGR03376 glycerol3P_DH glycer 97.8 4.2E-05 9.1E-10 72.5 6.9 95 119-215 1-122 (342)
178 PRK06249 2-dehydropantoate 2-r 97.8 0.00039 8.4E-09 65.0 13.3 108 118-231 6-127 (313)
179 PRK14182 bifunctional 5,10-met 97.8 7.6E-05 1.7E-09 68.6 8.2 80 112-212 152-232 (282)
180 PRK14171 bifunctional 5,10-met 97.8 7.1E-05 1.5E-09 69.0 8.0 123 112-276 154-277 (288)
181 PRK12439 NAD(P)H-dependent gly 97.8 4.6E-05 9.9E-10 72.3 6.9 93 118-213 8-115 (341)
182 PLN02616 tetrahydrofolate dehy 97.8 7.5E-05 1.6E-09 70.6 8.1 80 112-212 226-306 (364)
183 PRK07340 ornithine cyclodeamin 97.8 5.3E-05 1.1E-09 70.7 7.1 91 115-212 123-220 (304)
184 PTZ00345 glycerol-3-phosphate 97.8 5.2E-05 1.1E-09 72.5 7.1 98 117-216 11-136 (365)
185 PRK11730 fadB multifunctional 97.8 0.00014 3E-09 75.5 10.9 115 118-236 314-452 (715)
186 PLN02897 tetrahydrofolate dehy 97.8 8E-05 1.7E-09 70.0 8.1 129 112-276 209-338 (345)
187 PRK14181 bifunctional 5,10-met 97.8 9.6E-05 2.1E-09 68.1 8.3 80 112-212 148-232 (287)
188 COG1712 Predicted dinucleotide 97.8 7.8E-05 1.7E-09 65.8 7.2 96 118-218 1-100 (255)
189 PRK14193 bifunctional 5,10-met 97.7 0.00011 2.5E-09 67.6 8.3 118 112-272 153-273 (284)
190 cd01076 NAD_bind_1_Glu_DH NAD( 97.7 0.00034 7.3E-09 62.7 11.1 108 113-229 27-154 (227)
191 PRK14184 bifunctional 5,10-met 97.7 9.9E-05 2.1E-09 68.0 7.8 79 112-211 152-235 (286)
192 PRK08618 ornithine cyclodeamin 97.7 0.0001 2.2E-09 69.5 8.1 89 116-211 126-223 (325)
193 PRK12549 shikimate 5-dehydroge 97.7 0.00011 2.4E-09 67.9 8.3 71 114-184 124-203 (284)
194 cd05313 NAD_bind_2_Glu_DH NAD( 97.7 0.00051 1.1E-08 62.4 12.3 129 73-229 14-172 (254)
195 COG1250 FadB 3-hydroxyacyl-CoA 97.7 0.00021 4.7E-09 66.5 10.0 116 117-236 3-142 (307)
196 PRK14031 glutamate dehydrogena 97.7 0.00038 8.3E-09 67.9 12.1 111 112-229 223-361 (444)
197 PRK13301 putative L-aspartate 97.7 0.00013 2.7E-09 66.5 8.2 103 118-226 3-113 (267)
198 PLN02477 glutamate dehydrogena 97.7 0.0021 4.6E-08 62.3 17.0 110 112-229 201-329 (410)
199 cd05211 NAD_bind_Glu_Leu_Phe_V 97.7 0.00039 8.5E-09 61.8 10.9 109 113-229 19-145 (217)
200 TIGR02992 ectoine_eutC ectoine 97.7 0.00014 3.1E-09 68.5 8.5 88 116-209 128-224 (326)
201 PRK14185 bifunctional 5,10-met 97.7 0.00015 3.3E-09 67.0 8.3 80 112-212 152-236 (293)
202 PRK14174 bifunctional 5,10-met 97.7 0.00014 3E-09 67.5 7.9 80 112-212 154-238 (295)
203 TIGR02440 FadJ fatty oxidation 97.7 0.00028 6E-09 73.1 10.8 115 118-236 305-444 (699)
204 PRK06046 alanine dehydrogenase 97.7 0.00013 2.9E-09 68.7 7.9 87 117-210 129-224 (326)
205 PRK13303 L-aspartate dehydroge 97.7 0.00024 5.3E-09 65.0 9.3 107 118-229 2-115 (265)
206 PRK00676 hemA glutamyl-tRNA re 97.7 0.00017 3.7E-09 68.0 8.4 92 114-211 171-263 (338)
207 PRK09310 aroDE bifunctional 3- 97.7 0.00015 3.2E-09 71.9 8.3 72 112-184 327-401 (477)
208 PRK06444 prephenate dehydrogen 97.6 0.00023 4.9E-09 62.4 8.3 62 118-213 1-63 (197)
209 PRK14168 bifunctional 5,10-met 97.6 0.00019 4.1E-09 66.5 8.2 136 111-282 155-295 (297)
210 PRK11154 fadJ multifunctional 97.6 0.00029 6.3E-09 73.1 10.1 115 118-236 310-449 (708)
211 TIGR02441 fa_ox_alpha_mit fatt 97.6 0.00026 5.7E-09 73.7 9.8 115 118-236 336-474 (737)
212 TIGR02437 FadB fatty oxidation 97.6 0.00038 8.2E-09 72.2 10.9 104 118-224 314-441 (714)
213 PRK08291 ectoine utilization p 97.6 0.0002 4.4E-09 67.5 8.2 88 116-209 131-227 (330)
214 PRK14167 bifunctional 5,10-met 97.6 0.00025 5.4E-09 65.8 8.4 80 112-212 152-236 (297)
215 PF01408 GFO_IDH_MocA: Oxidore 97.6 9E-05 2E-09 58.8 4.8 66 119-184 2-73 (120)
216 PTZ00117 malate dehydrogenase; 97.6 0.00038 8.2E-09 65.4 9.7 117 115-232 3-147 (319)
217 COG0677 WecC UDP-N-acetyl-D-ma 97.6 0.00067 1.5E-08 64.6 11.1 144 118-269 10-190 (436)
218 TIGR02354 thiF_fam2 thiamine b 97.6 0.00017 3.7E-09 63.3 6.7 96 113-209 17-145 (200)
219 PRK14030 glutamate dehydrogena 97.6 0.001 2.2E-08 65.0 12.5 110 112-229 223-362 (445)
220 smart00859 Semialdhyde_dh Semi 97.6 0.00026 5.6E-09 56.8 6.9 89 119-209 1-99 (122)
221 COG1748 LYS9 Saccharopine dehy 97.6 0.00022 4.7E-09 68.4 7.5 88 118-211 2-101 (389)
222 TIGR01921 DAP-DH diaminopimela 97.5 0.0003 6.5E-09 66.0 8.1 106 118-229 4-115 (324)
223 PRK06823 ornithine cyclodeamin 97.5 0.00028 6.1E-09 66.2 7.8 89 116-210 127-223 (315)
224 TIGR01763 MalateDH_bact malate 97.5 0.00036 7.7E-09 65.2 7.9 116 118-234 2-147 (305)
225 PF02558 ApbA: Ketopantoate re 97.5 0.00015 3.3E-09 60.0 4.8 109 120-232 1-123 (151)
226 PF00208 ELFV_dehydrog: Glutam 97.5 0.0008 1.7E-08 60.9 9.7 110 114-229 29-165 (244)
227 PRK00048 dihydrodipicolinate r 97.5 0.00056 1.2E-08 62.3 8.7 92 118-214 2-96 (257)
228 PRK09414 glutamate dehydrogena 97.5 0.0009 1.9E-08 65.5 10.4 110 112-229 227-362 (445)
229 cd00650 LDH_MDH_like NAD-depen 97.4 0.00034 7.4E-09 63.8 6.7 115 120-235 1-148 (263)
230 PF02423 OCD_Mu_crystall: Orni 97.4 0.0002 4.4E-09 67.1 5.2 92 118-213 129-228 (313)
231 PRK06407 ornithine cyclodeamin 97.4 0.00053 1.2E-08 63.9 7.8 89 116-210 116-213 (301)
232 TIGR01809 Shik-DH-AROM shikima 97.4 0.00052 1.1E-08 63.4 7.5 71 114-184 122-201 (282)
233 PRK06718 precorrin-2 dehydroge 97.4 0.00041 8.9E-09 61.0 6.5 91 113-209 6-100 (202)
234 PTZ00079 NADP-specific glutama 97.4 0.0035 7.5E-08 61.3 13.2 111 112-229 232-371 (454)
235 PRK06199 ornithine cyclodeamin 97.4 0.00055 1.2E-08 65.8 7.6 91 117-210 155-260 (379)
236 COG0334 GdhA Glutamate dehydro 97.3 0.00092 2E-08 64.1 8.2 96 112-214 202-317 (411)
237 PF03720 UDPG_MGDP_dh_C: UDP-g 97.3 0.00081 1.7E-08 52.8 6.4 79 128-208 18-100 (106)
238 COG2423 Predicted ornithine cy 97.3 0.00085 1.8E-08 63.2 7.6 88 117-210 130-226 (330)
239 TIGR01470 cysG_Nterm siroheme 97.3 0.00072 1.6E-08 59.6 6.7 92 113-209 5-100 (205)
240 PF01118 Semialdhyde_dh: Semia 97.3 0.00051 1.1E-08 55.2 5.3 86 119-210 1-98 (121)
241 PRK07589 ornithine cyclodeamin 97.3 0.00077 1.7E-08 64.0 7.4 90 117-210 129-226 (346)
242 PRK01710 murD UDP-N-acetylmura 97.3 0.0019 4.1E-08 63.6 10.4 114 114-228 11-144 (458)
243 PF01113 DapB_N: Dihydrodipico 97.3 0.0013 2.9E-08 53.1 7.7 103 119-226 2-115 (124)
244 PRK12548 shikimate 5-dehydroge 97.2 0.0016 3.4E-08 60.4 8.7 37 114-150 123-160 (289)
245 PRK09880 L-idonate 5-dehydroge 97.2 0.0018 3.9E-08 60.9 9.2 91 115-210 168-267 (343)
246 PF00185 OTCace: Aspartate/orn 97.2 0.0029 6.4E-08 53.4 9.0 94 116-209 1-120 (158)
247 PRK00683 murD UDP-N-acetylmura 97.2 0.0014 3E-08 63.7 8.0 111 117-227 3-128 (418)
248 PF13380 CoA_binding_2: CoA bi 97.1 0.0014 3.1E-08 52.4 6.6 100 118-229 1-104 (116)
249 PRK00779 ornithine carbamoyltr 97.1 0.013 2.8E-07 54.7 13.9 129 57-208 115-264 (304)
250 cd08230 glucose_DH Glucose deh 97.1 0.0015 3.3E-08 61.7 7.8 90 116-210 172-270 (355)
251 PRK01713 ornithine carbamoyltr 97.1 0.011 2.3E-07 56.1 13.3 131 57-209 118-275 (334)
252 COG1004 Ugd Predicted UDP-gluc 97.1 0.0027 5.8E-08 60.7 9.1 110 118-227 1-138 (414)
253 TIGR00658 orni_carb_tr ornithi 97.1 0.017 3.6E-07 54.1 14.4 129 57-208 111-263 (304)
254 PRK05708 2-dehydropantoate 2-r 97.1 0.002 4.4E-08 60.1 8.2 112 118-232 3-126 (305)
255 PRK06719 precorrin-2 dehydroge 97.1 0.0015 3.3E-08 55.1 6.6 70 113-184 9-81 (157)
256 COG0569 TrkA K+ transport syst 97.1 0.00075 1.6E-08 60.3 4.9 69 118-186 1-79 (225)
257 COG0169 AroE Shikimate 5-dehyd 97.0 0.0034 7.3E-08 58.0 8.9 92 113-208 122-225 (283)
258 cd05312 NAD_bind_1_malic_enz N 97.0 0.019 4.1E-07 52.8 13.4 180 76-285 4-224 (279)
259 PRK02255 putrescine carbamoylt 97.0 0.016 3.5E-07 54.9 13.4 133 57-209 114-272 (338)
260 PRK09496 trkA potassium transp 97.0 0.0017 3.7E-08 63.4 7.1 69 118-186 1-78 (453)
261 PRK01390 murD UDP-N-acetylmura 97.0 0.0046 1E-07 60.8 10.1 114 114-227 6-140 (460)
262 PRK08269 3-hydroxybutyryl-CoA 97.0 0.013 2.8E-07 55.0 12.4 95 128-224 1-128 (314)
263 PRK06223 malate dehydrogenase; 97.0 0.0041 8.8E-08 57.9 8.9 113 118-232 3-144 (307)
264 TIGR03366 HpnZ_proposed putati 97.0 0.0023 5E-08 58.5 7.1 89 116-209 120-218 (280)
265 TIGR01850 argC N-acetyl-gamma- 96.9 0.0045 9.7E-08 58.9 9.2 95 118-218 1-108 (346)
266 KOG2304 3-hydroxyacyl-CoA dehy 96.9 0.00032 6.9E-09 62.1 1.2 121 115-239 9-159 (298)
267 PTZ00082 L-lactate dehydrogena 96.9 0.0034 7.4E-08 59.1 8.0 116 115-232 4-153 (321)
268 TIGR02356 adenyl_thiF thiazole 96.9 0.002 4.4E-08 56.5 6.1 37 113-149 17-54 (202)
269 PF02254 TrkA_N: TrkA-N domain 96.9 0.0023 4.9E-08 50.4 5.9 85 120-206 1-93 (116)
270 PRK03369 murD UDP-N-acetylmura 96.9 0.002 4.3E-08 64.1 6.5 113 115-227 10-143 (488)
271 cd05297 GH4_alpha_glucosidase_ 96.9 0.0018 3.9E-08 63.3 6.0 107 118-224 1-160 (423)
272 TIGR02964 xanthine_xdhC xanthi 96.9 0.0067 1.5E-07 55.0 9.2 88 118-228 101-188 (246)
273 PRK03515 ornithine carbamoyltr 96.9 0.013 2.9E-07 55.4 11.6 132 57-209 117-275 (336)
274 cd00762 NAD_bind_malic_enz NAD 96.9 0.038 8.3E-07 50.1 14.0 159 76-261 4-196 (254)
275 PRK04207 glyceraldehyde-3-phos 96.9 0.0037 8.1E-08 59.3 7.8 67 118-184 2-89 (341)
276 TIGR02822 adh_fam_2 zinc-bindi 96.8 0.0038 8.3E-08 58.5 7.8 90 116-210 165-255 (329)
277 PRK08306 dipicolinate synthase 96.8 0.0082 1.8E-07 55.8 9.9 106 116-229 1-116 (296)
278 TIGR01761 thiaz-red thiazoliny 96.8 0.0067 1.4E-07 57.6 9.2 111 118-231 4-119 (343)
279 PRK04284 ornithine carbamoyltr 96.8 0.019 4.2E-07 54.2 12.3 131 57-209 117-274 (332)
280 TIGR00670 asp_carb_tr aspartat 96.8 0.0099 2.1E-07 55.5 10.2 96 114-209 147-263 (301)
281 COG5322 Predicted dehydrogenas 96.8 0.003 6.5E-08 57.4 6.3 101 111-216 161-268 (351)
282 PRK00856 pyrB aspartate carbam 96.8 0.0064 1.4E-07 56.9 8.8 93 114-208 153-261 (305)
283 PRK08300 acetaldehyde dehydrog 96.8 0.0068 1.5E-07 56.4 8.8 88 117-209 4-101 (302)
284 PRK02102 ornithine carbamoyltr 96.8 0.026 5.7E-07 53.3 12.8 130 57-209 118-273 (331)
285 PRK12749 quinate/shikimate deh 96.8 0.0097 2.1E-07 55.2 9.6 72 113-184 120-207 (288)
286 PRK12475 thiamine/molybdopteri 96.8 0.0025 5.5E-08 60.4 5.8 38 113-150 20-58 (338)
287 PRK13814 pyrB aspartate carbam 96.7 0.027 5.8E-07 52.8 12.5 67 114-180 154-224 (310)
288 PRK03659 glutathione-regulated 96.7 0.0036 7.8E-08 63.8 7.2 92 117-210 400-499 (601)
289 PRK12562 ornithine carbamoyltr 96.7 0.037 8E-07 52.4 13.4 132 57-209 117-275 (334)
290 COG4007 Predicted dehydrogenas 96.7 0.0062 1.4E-07 55.0 7.7 91 129-223 33-128 (340)
291 COG0026 PurK Phosphoribosylami 96.7 0.0032 6.9E-08 59.6 6.0 63 117-179 1-68 (375)
292 cd05291 HicDH_like L-2-hydroxy 96.7 0.0042 9.2E-08 57.9 6.8 92 118-210 1-118 (306)
293 cd01339 LDH-like_MDH L-lactate 96.7 0.0055 1.2E-07 57.0 7.5 111 120-232 1-140 (300)
294 cd00757 ThiF_MoeB_HesA_family 96.7 0.034 7.5E-07 49.6 12.3 93 113-209 17-143 (228)
295 PLN02968 Probable N-acetyl-gam 96.7 0.0037 7.9E-08 60.2 6.4 100 115-220 36-145 (381)
296 PLN02353 probable UDP-glucose 96.7 0.014 3E-07 57.9 10.5 102 114-219 321-455 (473)
297 PLN02342 ornithine carbamoyltr 96.7 0.055 1.2E-06 51.5 14.1 130 57-209 157-307 (348)
298 PRK00436 argC N-acetyl-gamma-g 96.7 0.0078 1.7E-07 57.2 8.4 95 118-218 3-108 (343)
299 COG1893 ApbA Ketopantoate redu 96.6 0.0065 1.4E-07 56.9 7.7 108 118-229 1-120 (307)
300 PRK14027 quinate/shikimate deh 96.6 0.0073 1.6E-07 55.9 7.9 71 114-184 124-205 (283)
301 PRK00141 murD UDP-N-acetylmura 96.6 0.004 8.7E-08 61.6 6.4 114 114-227 12-147 (473)
302 PRK10669 putative cation:proto 96.6 0.0046 1E-07 62.4 6.9 87 118-206 418-512 (558)
303 cd05188 MDR Medium chain reduc 96.6 0.013 2.9E-07 52.0 9.1 92 115-211 133-234 (271)
304 PRK04148 hypothetical protein; 96.6 0.0046 1E-07 50.7 5.5 69 116-185 16-89 (134)
305 TIGR03215 ac_ald_DH_ac acetald 96.6 0.012 2.6E-07 54.4 8.8 87 118-209 2-95 (285)
306 COG3288 PntA NAD/NADP transhyd 96.6 0.0044 9.5E-08 57.3 5.6 96 113-209 160-281 (356)
307 COG0540 PyrB Aspartate carbamo 96.5 0.027 5.9E-07 52.2 10.8 149 2-180 67-231 (316)
308 COG1648 CysG Siroheme synthase 96.5 0.0042 9E-08 55.0 5.3 91 112-209 7-103 (210)
309 COG1063 Tdh Threonine dehydrog 96.5 0.014 3E-07 55.6 9.2 91 116-211 168-271 (350)
310 PRK11891 aspartate carbamoyltr 96.5 0.062 1.3E-06 52.5 13.7 133 57-208 199-354 (429)
311 PLN02520 bifunctional 3-dehydr 96.5 0.01 2.2E-07 59.7 8.6 71 114-184 376-450 (529)
312 PLN02527 aspartate carbamoyltr 96.5 0.022 4.7E-07 53.3 10.2 96 114-209 148-266 (306)
313 TIGR00036 dapB dihydrodipicoli 96.5 0.019 4.1E-07 52.6 9.7 106 118-228 2-119 (266)
314 PRK00066 ldh L-lactate dehydro 96.5 0.0073 1.6E-07 56.7 7.0 94 116-210 5-123 (315)
315 PRK02472 murD UDP-N-acetylmura 96.5 0.026 5.7E-07 55.1 11.2 114 114-227 2-134 (447)
316 cd08239 THR_DH_like L-threonin 96.5 0.009 1.9E-07 55.8 7.6 90 116-210 163-263 (339)
317 PRK11579 putative oxidoreducta 96.5 0.0094 2E-07 56.4 7.7 66 118-185 5-76 (346)
318 PRK06270 homoserine dehydrogen 96.5 0.019 4.1E-07 54.5 9.8 112 118-229 3-146 (341)
319 PLN02586 probable cinnamyl alc 96.5 0.014 3.1E-07 55.4 8.9 90 116-210 183-279 (360)
320 PRK03562 glutathione-regulated 96.5 0.0075 1.6E-07 61.8 7.3 89 117-207 400-496 (621)
321 PRK12862 malic enzyme; Reviewe 96.4 0.042 9.1E-07 57.5 12.7 122 61-213 160-296 (763)
322 PRK10206 putative oxidoreducta 96.4 0.0072 1.6E-07 57.3 6.6 67 119-185 3-76 (344)
323 PF03447 NAD_binding_3: Homose 96.4 0.0052 1.1E-07 48.8 4.7 100 124-228 1-112 (117)
324 PRK00421 murC UDP-N-acetylmura 96.4 0.0096 2.1E-07 58.6 7.5 113 115-227 5-133 (461)
325 cd05292 LDH_2 A subgroup of L- 96.4 0.007 1.5E-07 56.6 6.3 65 118-183 1-77 (308)
326 COG0673 MviM Predicted dehydro 96.4 0.0098 2.1E-07 55.6 7.3 68 118-185 4-79 (342)
327 COG1004 Ugd Predicted UDP-gluc 96.4 0.01 2.2E-07 56.8 7.3 67 115-183 308-386 (414)
328 TIGR03026 NDP-sugDHase nucleot 96.4 0.02 4.4E-07 55.6 9.6 89 114-208 310-409 (411)
329 cd05293 LDH_1 A subgroup of L- 96.4 0.017 3.8E-07 54.1 8.8 113 118-231 4-144 (312)
330 PLN02178 cinnamyl-alcohol dehy 96.4 0.013 2.8E-07 56.2 8.1 89 116-209 178-273 (375)
331 PRK07232 bifunctional malic en 96.4 0.081 1.8E-06 55.2 14.3 126 60-213 151-288 (752)
332 cd08237 ribitol-5-phosphate_DH 96.4 0.026 5.7E-07 53.1 10.1 90 116-209 163-256 (341)
333 TIGR03201 dearomat_had 6-hydro 96.4 0.0096 2.1E-07 56.1 7.0 90 116-210 166-273 (349)
334 PLN02819 lysine-ketoglutarate 96.3 0.012 2.5E-07 63.3 8.1 69 116-184 568-659 (1042)
335 PRK02006 murD UDP-N-acetylmura 96.3 0.01 2.2E-07 59.1 7.3 116 114-229 4-149 (498)
336 PRK14106 murD UDP-N-acetylmura 96.3 0.028 6E-07 55.0 10.3 113 114-226 2-133 (450)
337 TIGR02853 spore_dpaA dipicolin 96.3 0.035 7.6E-07 51.4 10.3 105 117-229 1-115 (287)
338 PRK12861 malic enzyme; Reviewe 96.3 0.047 1E-06 56.9 11.9 121 62-213 157-292 (764)
339 PF13460 NAD_binding_10: NADH( 96.3 0.0043 9.2E-08 52.6 3.7 63 120-184 1-71 (183)
340 PRK05086 malate dehydrogenase; 96.3 0.02 4.3E-07 53.7 8.4 95 118-212 1-121 (312)
341 TIGR03316 ygeW probable carbam 96.3 0.1 2.2E-06 49.9 13.3 68 114-181 167-253 (357)
342 cd08281 liver_ADH_like1 Zinc-d 96.3 0.012 2.7E-07 55.9 7.2 90 116-210 191-291 (371)
343 TIGR01202 bchC 2-desacetyl-2-h 96.3 0.012 2.7E-07 54.5 7.0 87 116-209 144-231 (308)
344 TIGR03451 mycoS_dep_FDH mycoth 96.2 0.014 3.1E-07 55.2 7.4 90 116-210 176-277 (358)
345 cd05283 CAD1 Cinnamyl alcohol 96.2 0.018 3.9E-07 53.9 8.0 90 116-210 169-264 (337)
346 COG0771 MurD UDP-N-acetylmuram 96.2 0.036 7.8E-07 54.4 10.1 125 115-239 5-156 (448)
347 PLN02740 Alcohol dehydrogenase 96.2 0.015 3.3E-07 55.6 7.5 90 116-210 198-301 (381)
348 PRK06349 homoserine dehydrogen 96.1 0.024 5.3E-07 55.4 8.7 108 118-229 4-125 (426)
349 COG2910 Putative NADH-flavin r 96.1 0.015 3.4E-07 50.1 6.2 66 118-183 1-72 (211)
350 PRK01438 murD UDP-N-acetylmura 96.1 0.013 2.8E-07 58.0 6.7 115 112-227 11-148 (480)
351 PF03435 Saccharop_dh: Sacchar 96.1 0.0059 1.3E-07 58.6 4.0 64 120-183 1-77 (386)
352 PRK12550 shikimate 5-dehydroge 96.0 0.031 6.6E-07 51.5 8.3 66 117-184 122-189 (272)
353 TIGR02825 B4_12hDH leukotriene 96.0 0.02 4.4E-07 53.1 7.0 89 116-210 138-238 (325)
354 CHL00194 ycf39 Ycf39; Provisio 96.0 0.013 2.8E-07 54.5 5.7 65 118-182 1-73 (317)
355 cd08242 MDR_like Medium chain 96.0 0.025 5.4E-07 52.2 7.5 90 115-209 154-245 (319)
356 cd08296 CAD_like Cinnamyl alco 95.9 0.026 5.6E-07 52.7 7.6 90 116-210 163-260 (333)
357 PRK09496 trkA potassium transp 95.9 0.028 6E-07 54.9 8.1 92 115-208 229-330 (453)
358 TIGR02818 adh_III_F_hyde S-(hy 95.9 0.022 4.8E-07 54.2 7.1 89 116-209 185-287 (368)
359 cd08255 2-desacetyl-2-hydroxye 95.9 0.028 6E-07 50.7 7.5 91 116-211 97-192 (277)
360 PF00056 Ldh_1_N: lactate/mala 95.9 0.0086 1.9E-07 49.5 3.7 65 118-182 1-78 (141)
361 cd08234 threonine_DH_like L-th 95.9 0.023 5E-07 52.7 6.9 92 116-212 159-260 (334)
362 PRK08644 thiamine biosynthesis 95.9 0.019 4.2E-07 50.8 6.1 37 113-149 24-61 (212)
363 PRK10309 galactitol-1-phosphat 95.9 0.022 4.8E-07 53.4 6.9 89 116-209 160-260 (347)
364 cd08233 butanediol_DH_like (2R 95.9 0.038 8.3E-07 51.9 8.4 90 116-210 172-273 (351)
365 PRK14804 ornithine carbamoyltr 95.9 0.11 2.5E-06 48.6 11.5 67 114-180 150-225 (311)
366 PRK07688 thiamine/molybdopteri 95.8 0.015 3.3E-07 55.1 5.7 37 113-149 20-57 (339)
367 PRK06019 phosphoribosylaminoim 95.8 0.014 3E-07 56.0 5.4 63 117-179 2-69 (372)
368 PRK05690 molybdopterin biosynt 95.8 0.017 3.6E-07 52.3 5.6 37 113-149 28-65 (245)
369 PF13478 XdhC_C: XdhC Rossmann 95.8 0.015 3.2E-07 47.9 4.8 79 120-225 1-79 (136)
370 PF04016 DUF364: Domain of unk 95.8 0.022 4.9E-07 47.4 5.9 86 115-209 9-95 (147)
371 PRK15182 Vi polysaccharide bio 95.8 0.14 3.1E-06 50.0 12.4 96 112-212 309-415 (425)
372 PRK10637 cysG siroheme synthas 95.8 0.024 5.2E-07 55.9 7.1 92 113-209 8-103 (457)
373 cd01487 E1_ThiF_like E1_ThiF_l 95.8 0.033 7.1E-07 47.7 7.0 32 119-150 1-33 (174)
374 PLN02514 cinnamyl-alcohol dehy 95.8 0.035 7.7E-07 52.6 7.9 91 115-210 179-276 (357)
375 COG0281 SfcA Malic enzyme [Ene 95.8 0.22 4.8E-06 48.1 13.1 184 60-282 165-369 (432)
376 TIGR02355 moeB molybdopterin s 95.8 0.017 3.7E-07 52.1 5.3 37 113-149 20-57 (240)
377 cd08301 alcohol_DH_plants Plan 95.7 0.038 8.3E-07 52.4 7.9 90 116-210 187-290 (369)
378 cd08293 PTGR2 Prostaglandin re 95.7 0.028 6.2E-07 52.4 6.9 87 117-209 155-254 (345)
379 cd00300 LDH_like L-lactate deh 95.7 0.036 7.8E-07 51.6 7.5 91 120-211 1-117 (300)
380 cd08245 CAD Cinnamyl alcohol d 95.7 0.033 7.1E-07 51.6 7.2 90 116-210 162-257 (330)
381 cd08277 liver_alcohol_DH_like 95.7 0.035 7.5E-07 52.7 7.4 91 115-210 183-287 (365)
382 cd08295 double_bond_reductase_ 95.6 0.029 6.3E-07 52.5 6.5 88 116-209 151-251 (338)
383 PRK04690 murD UDP-N-acetylmura 95.6 0.029 6.2E-07 55.5 6.7 113 115-227 6-141 (468)
384 TIGR01087 murD UDP-N-acetylmur 95.6 0.093 2E-06 51.1 10.2 109 119-228 1-129 (433)
385 PRK07200 aspartate/ornithine c 95.6 0.099 2.2E-06 50.6 10.1 67 114-180 184-269 (395)
386 PTZ00325 malate dehydrogenase; 95.6 0.034 7.4E-07 52.4 6.7 69 114-183 5-86 (321)
387 PRK03803 murD UDP-N-acetylmura 95.6 0.034 7.3E-07 54.5 7.0 110 117-227 6-134 (448)
388 cd08231 MDR_TM0436_like Hypoth 95.6 0.039 8.6E-07 52.0 7.3 90 116-210 177-281 (361)
389 cd01486 Apg7 Apg7 is an E1-lik 95.6 0.022 4.8E-07 53.0 5.3 31 119-149 1-32 (307)
390 PLN02383 aspartate semialdehyd 95.6 0.037 8E-07 52.7 7.0 86 116-209 6-100 (344)
391 KOG2711 Glycerol-3-phosphate d 95.5 0.042 9.2E-07 51.6 7.1 98 114-213 18-143 (372)
392 PLN02827 Alcohol dehydrogenase 95.5 0.045 9.8E-07 52.4 7.7 89 116-209 193-295 (378)
393 PRK08192 aspartate carbamoyltr 95.5 0.07 1.5E-06 50.6 8.8 67 114-180 156-233 (338)
394 PRK05562 precorrin-2 dehydroge 95.5 0.036 7.7E-07 49.5 6.4 90 113-208 21-115 (223)
395 cd08298 CAD2 Cinnamyl alcohol 95.5 0.045 9.7E-07 50.7 7.3 90 115-209 166-256 (329)
396 PLN03154 putative allyl alcoho 95.5 0.03 6.5E-07 52.9 6.2 88 116-209 158-258 (348)
397 PRK11064 wecC UDP-N-acetyl-D-m 95.5 0.043 9.3E-07 53.5 7.4 72 112-184 315-397 (415)
398 cd08289 MDR_yhfp_like Yhfp put 95.5 0.044 9.6E-07 50.5 7.2 89 116-210 146-244 (326)
399 PRK01368 murD UDP-N-acetylmura 95.5 0.046 9.9E-07 53.9 7.6 111 116-227 5-130 (454)
400 cd08300 alcohol_DH_class_III c 95.5 0.044 9.6E-07 52.1 7.3 89 116-209 186-288 (368)
401 PRK15076 alpha-galactosidase; 95.4 0.03 6.5E-07 54.9 6.2 114 118-232 2-169 (431)
402 cd05284 arabinose_DH_like D-ar 95.4 0.064 1.4E-06 49.9 8.1 92 116-212 167-269 (340)
403 PRK04308 murD UDP-N-acetylmura 95.4 0.046 9.9E-07 53.5 7.3 114 115-228 3-137 (445)
404 cd08269 Zn_ADH9 Alcohol dehydr 95.3 0.073 1.6E-06 48.6 8.1 90 116-210 129-230 (312)
405 PRK10083 putative oxidoreducta 95.3 0.064 1.4E-06 49.9 7.7 91 116-211 160-261 (339)
406 cd01338 MDH_choloroplast_like 95.3 0.12 2.5E-06 48.8 9.5 65 118-182 3-87 (322)
407 PF05222 AlaDh_PNT_N: Alanine 95.3 0.16 3.6E-06 41.7 9.2 98 131-238 18-119 (136)
408 PRK07231 fabG 3-ketoacyl-(acyl 95.3 0.033 7.1E-07 49.3 5.5 39 114-152 2-41 (251)
409 PRK08223 hypothetical protein; 95.3 0.039 8.4E-07 51.1 6.0 37 113-149 23-60 (287)
410 PRK06392 homoserine dehydrogen 95.3 0.068 1.5E-06 50.5 7.7 110 119-229 2-137 (326)
411 cd08260 Zn_ADH6 Alcohol dehydr 95.3 0.063 1.4E-06 50.2 7.5 91 116-211 165-266 (345)
412 KOG0022 Alcohol dehydrogenase, 95.2 0.093 2E-06 49.0 8.2 53 116-168 192-245 (375)
413 PF03949 Malic_M: Malic enzyme 95.2 0.06 1.3E-06 48.9 7.0 128 76-227 4-159 (255)
414 PRK05786 fabG 3-ketoacyl-(acyl 95.2 0.033 7.2E-07 49.0 5.2 38 114-151 2-40 (238)
415 PF05368 NmrA: NmrA-like famil 95.2 0.021 4.6E-07 50.5 4.0 65 120-184 1-75 (233)
416 PRK14874 aspartate-semialdehyd 95.2 0.044 9.5E-07 51.9 6.3 88 117-210 1-95 (334)
417 cd08285 NADP_ADH NADP(H)-depen 95.2 0.067 1.4E-06 50.2 7.4 89 116-209 166-266 (351)
418 PRK08762 molybdopterin biosynt 95.2 0.071 1.5E-06 51.2 7.7 37 113-149 131-168 (376)
419 cd01492 Aos1_SUMO Ubiquitin ac 95.1 0.039 8.4E-07 48.3 5.3 38 113-150 17-55 (197)
420 KOG0024 Sorbitol dehydrogenase 95.1 0.082 1.8E-06 49.5 7.5 49 116-164 169-218 (354)
421 PF00107 ADH_zinc_N: Zinc-bind 95.1 0.013 2.7E-07 46.9 1.9 79 127-210 1-90 (130)
422 PRK09422 ethanol-active dehydr 95.0 0.092 2E-06 48.8 7.9 90 116-210 162-262 (338)
423 cd08294 leukotriene_B4_DH_like 95.0 0.08 1.7E-06 48.8 7.4 88 116-209 143-241 (329)
424 cd05280 MDR_yhdh_yhfp Yhdh and 95.0 0.081 1.8E-06 48.6 7.3 87 117-209 147-243 (325)
425 cd01483 E1_enzyme_family Super 95.0 0.2 4.3E-06 41.0 8.9 32 119-150 1-33 (143)
426 COG2344 AT-rich DNA-binding pr 95.0 0.017 3.6E-07 49.9 2.4 67 118-184 85-157 (211)
427 cd08270 MDR4 Medium chain dehy 95.0 0.085 1.8E-06 48.1 7.3 89 116-210 132-223 (305)
428 TIGR02717 AcCoA-syn-alpha acet 95.0 0.17 3.6E-06 49.9 9.8 107 115-229 5-123 (447)
429 TIGR01772 MDH_euk_gproteo mala 95.0 0.078 1.7E-06 49.8 7.1 92 119-211 1-118 (312)
430 cd01337 MDH_glyoxysomal_mitoch 94.9 0.1 2.2E-06 49.0 7.8 94 118-212 1-120 (310)
431 cd08232 idonate-5-DH L-idonate 94.9 0.08 1.7E-06 49.2 7.2 90 116-210 165-263 (339)
432 cd08274 MDR9 Medium chain dehy 94.9 0.088 1.9E-06 49.1 7.4 87 116-209 177-273 (350)
433 PLN00106 malate dehydrogenase 94.9 0.067 1.5E-06 50.4 6.6 96 116-212 17-138 (323)
434 cd08284 FDH_like_2 Glutathione 94.9 0.087 1.9E-06 49.1 7.3 93 115-212 166-269 (344)
435 PRK13376 pyrB bifunctional asp 94.9 0.16 3.5E-06 50.8 9.5 96 114-209 171-293 (525)
436 cd05294 LDH-like_MDH_nadp A la 94.9 0.17 3.7E-06 47.3 9.2 64 118-182 1-81 (309)
437 PRK12769 putative oxidoreducta 94.9 0.065 1.4E-06 55.3 6.9 69 115-183 325-422 (654)
438 PRK03815 murD UDP-N-acetylmura 94.9 0.22 4.8E-06 48.3 10.2 105 118-226 1-114 (401)
439 PLN02602 lactate dehydrogenase 94.8 0.086 1.9E-06 50.3 7.2 92 118-210 38-155 (350)
440 COG0604 Qor NADPH:quinone redu 94.8 0.061 1.3E-06 50.7 6.1 87 117-209 143-241 (326)
441 PRK03806 murD UDP-N-acetylmura 94.8 0.082 1.8E-06 51.6 7.2 112 114-226 3-130 (438)
442 PRK04663 murD UDP-N-acetylmura 94.8 0.24 5.2E-06 48.5 10.3 111 115-227 4-134 (438)
443 PLN02662 cinnamyl-alcohol dehy 94.8 0.084 1.8E-06 48.7 6.9 67 116-182 3-85 (322)
444 cd01485 E1-1_like Ubiquitin ac 94.7 0.059 1.3E-06 47.1 5.3 37 113-149 15-52 (198)
445 TIGR01851 argC_other N-acetyl- 94.7 0.13 2.7E-06 48.2 7.7 75 119-209 3-80 (310)
446 PLN02948 phosphoribosylaminoim 94.7 0.056 1.2E-06 54.9 5.8 69 114-182 19-92 (577)
447 TIGR01161 purK phosphoribosyla 94.7 0.045 9.9E-07 51.8 4.9 62 119-180 1-67 (352)
448 cd08278 benzyl_alcohol_DH Benz 94.7 0.16 3.5E-06 48.1 8.7 91 116-211 186-287 (365)
449 PRK05442 malate dehydrogenase; 94.7 0.26 5.6E-06 46.6 9.9 65 118-182 5-89 (326)
450 TIGR02819 fdhA_non_GSH formald 94.7 0.15 3.2E-06 49.3 8.5 95 115-210 184-300 (393)
451 cd08286 FDH_like_ADH2 formalde 94.7 0.11 2.4E-06 48.5 7.4 89 116-209 166-266 (345)
452 cd00704 MDH Malate dehydrogena 94.7 0.17 3.7E-06 47.7 8.6 65 118-182 1-85 (323)
453 PRK11863 N-acetyl-gamma-glutam 94.7 0.1 2.2E-06 49.0 7.0 76 118-209 3-81 (313)
454 PRK08324 short chain dehydroge 94.6 0.054 1.2E-06 56.1 5.6 40 113-152 418-458 (681)
455 PLN03209 translocon at the inn 94.6 0.051 1.1E-06 54.9 5.2 69 115-183 78-169 (576)
456 cd05286 QOR2 Quinone oxidoredu 94.6 0.095 2.1E-06 47.4 6.6 90 116-211 136-237 (320)
457 PRK04523 N-acetylornithine car 94.5 0.39 8.5E-06 45.5 10.8 101 57-181 132-252 (335)
458 COG2227 UbiG 2-polyprenyl-3-me 94.5 0.11 2.5E-06 46.6 6.5 88 115-208 58-160 (243)
459 PRK05600 thiamine biosynthesis 94.5 0.07 1.5E-06 51.2 5.6 37 113-149 37-74 (370)
460 PRK07806 short chain dehydroge 94.4 0.14 3E-06 45.3 7.2 37 114-150 3-40 (248)
461 TIGR01758 MDH_euk_cyt malate d 94.4 0.18 4E-06 47.5 8.3 64 119-182 1-84 (324)
462 cd08246 crotonyl_coA_red croto 94.4 0.14 2.9E-06 49.1 7.6 47 115-161 192-239 (393)
463 cd08252 AL_MDR Arginate lyase 94.4 0.16 3.4E-06 47.1 7.8 88 117-209 150-248 (336)
464 PRK13529 malate dehydrogenase; 94.4 1.5 3.2E-05 44.2 14.8 146 57-229 258-439 (563)
465 TIGR03466 HpnA hopanoid-associ 94.4 0.058 1.3E-06 49.7 4.8 65 118-182 1-73 (328)
466 COG1062 AdhC Zn-dependent alco 94.4 0.16 3.4E-06 47.9 7.5 90 116-210 185-286 (366)
467 PRK12809 putative oxidoreducta 94.4 0.1 2.3E-06 53.6 7.0 70 115-184 308-406 (639)
468 TIGR02823 oxido_YhdH putative 94.3 0.14 2.9E-06 47.2 7.2 89 116-210 144-242 (323)
469 cd05285 sorbitol_DH Sorbitol d 94.3 0.14 3E-06 47.9 7.2 91 115-210 161-266 (343)
470 COG0078 ArgF Ornithine carbamo 94.3 0.39 8.4E-06 44.6 9.7 95 115-209 151-270 (310)
471 cd08292 ETR_like_2 2-enoyl thi 94.2 0.14 2.9E-06 47.1 6.9 88 116-209 139-238 (324)
472 PF02629 CoA_binding: CoA bind 94.2 0.035 7.6E-07 42.6 2.4 66 118-184 4-73 (96)
473 cd08291 ETR_like_1 2-enoyl thi 94.2 0.2 4.3E-06 46.4 7.9 88 116-209 142-242 (324)
474 PRK14805 ornithine carbamoyltr 94.1 1.6 3.5E-05 40.8 13.8 101 57-181 110-222 (302)
475 cd08256 Zn_ADH2 Alcohol dehydr 94.1 0.16 3.5E-06 47.6 7.3 89 116-209 174-274 (350)
476 TIGR01296 asd_B aspartate-semi 94.1 0.075 1.6E-06 50.4 5.0 85 119-209 1-92 (339)
477 PRK02705 murD UDP-N-acetylmura 94.1 0.14 3E-06 50.3 7.0 109 119-227 2-135 (459)
478 cd08240 6_hydroxyhexanoate_dh_ 94.1 0.21 4.5E-06 46.8 7.9 89 116-209 175-274 (350)
479 TIGR01082 murC UDP-N-acetylmur 94.1 0.13 2.8E-06 50.5 6.7 108 120-227 2-125 (448)
480 PLN02427 UDP-apiose/xylose syn 94.1 0.1 2.2E-06 49.9 5.9 71 111-181 8-94 (386)
481 cd08254 hydroxyacyl_CoA_DH 6-h 94.0 0.14 3.1E-06 47.2 6.6 90 116-210 165-264 (338)
482 cd08287 FDH_like_ADH3 formalde 94.0 0.15 3.2E-06 47.6 6.8 89 116-209 168-268 (345)
483 PRK12814 putative NADPH-depend 94.0 0.33 7.2E-06 50.1 9.9 69 116-184 192-289 (652)
484 PTZ00317 NADP-dependent malic 94.0 2.1 4.5E-05 43.2 14.9 173 60-261 263-471 (559)
485 PLN02896 cinnamyl-alcohol dehy 94.0 0.11 2.3E-06 49.1 5.8 72 111-182 4-88 (353)
486 PLN02702 L-idonate 5-dehydroge 94.0 0.14 3E-06 48.4 6.6 90 116-210 181-286 (364)
487 TIGR01532 E4PD_g-proteo D-eryt 94.0 0.11 2.3E-06 49.1 5.7 30 119-148 1-34 (325)
488 cd05290 LDH_3 A subgroup of L- 94.0 0.12 2.7E-06 48.3 6.1 64 119-182 1-77 (307)
489 PRK07523 gluconate 5-dehydroge 94.0 0.15 3.2E-06 45.4 6.5 37 114-150 7-44 (255)
490 cd05281 TDH Threonine dehydrog 94.0 0.17 3.7E-06 47.2 7.1 90 116-210 163-263 (341)
491 PRK06182 short chain dehydroge 94.0 0.089 1.9E-06 47.5 5.0 67 116-182 2-83 (273)
492 cd01336 MDH_cytoplasmic_cytoso 93.9 0.11 2.3E-06 49.1 5.6 64 119-182 4-87 (325)
493 KOG3124 Pyrroline-5-carboxylat 93.9 0.083 1.8E-06 47.8 4.5 90 119-214 2-100 (267)
494 PLN02819 lysine-ketoglutarate 93.9 0.096 2.1E-06 56.5 5.8 93 115-209 201-338 (1042)
495 PRK08374 homoserine dehydrogen 93.9 0.21 4.5E-06 47.4 7.5 107 118-229 3-143 (336)
496 cd08236 sugar_DH NAD(P)-depend 93.9 0.24 5.1E-06 46.2 7.9 89 116-209 159-258 (343)
497 PF00070 Pyr_redox: Pyridine n 93.9 0.084 1.8E-06 38.8 3.9 33 119-151 1-33 (80)
498 PLN03129 NADP-dependent malic 93.9 2.9 6.2E-05 42.4 15.7 168 60-261 287-491 (581)
499 PRK07878 molybdopterin biosynt 93.9 0.11 2.3E-06 50.4 5.6 37 113-149 38-75 (392)
500 TIGR00692 tdh L-threonine 3-de 93.8 0.19 4.2E-06 46.9 7.2 91 115-210 160-262 (340)
No 1
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-66 Score=485.80 Aligned_cols=259 Identities=35% Similarity=0.554 Sum_probs=242.4
Q ss_pred chhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHh
Q 021995 22 SSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVIS 100 (304)
Q Consensus 22 ~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~ 100 (304)
+.+++++++ ..+|+||+|++.++|+| |+|+++++++||.|+|+|+.|+.+||||+++++|++.|+++.++..+++
T Consensus 52 ~~~~v~~~~l~~~~~Lk~I~~~g~Gvd----~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~ 127 (324)
T COG0111 52 SVTPVTEEVLAAAPNLKAIGRAGAGVD----NIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRR 127 (324)
T ss_pred ecCCCCHHHHhhCCCceEEEEcccccc----ccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHc
Confidence 889999987 77899999999999998 5569999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEc
Q 021995 101 GEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVN 180 (304)
Q Consensus 101 ~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~ 180 (304)
|.|.+.. ..+.+|+||||||||+|.||+.+|+++++|||+|++||+... .+.....++....+|++++++||+|++|
T Consensus 128 g~W~~~~--~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~-~~~~~~~~~~~~~~Ld~lL~~sDiv~lh 204 (324)
T COG0111 128 GEWDRKA--FRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSP-RERAGVDGVVGVDSLDELLAEADILTLH 204 (324)
T ss_pred CCccccc--cccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCc-hhhhccccceecccHHHHHhhCCEEEEc
Confidence 9999743 346799999999999999999999999999999999999432 2334445666677999999999999999
Q ss_pred CCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCC
Q 021995 181 TPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVS 260 (304)
Q Consensus 181 ~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia 260 (304)
+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+|.+||||.+|||++|||+|
T Consensus 205 ~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia 284 (324)
T COG0111 205 LPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIG 284 (324)
T ss_pred CCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995 261 GTTIDAQLRYAAGVKDMLDRYFKGEDF 287 (304)
Q Consensus 261 ~~t~e~~~~~~~~~~~~l~~~~~g~~~ 287 (304)
|+|.|+++++...+.+|+.+|++|.++
T Consensus 285 ~~T~ea~~~~~~~~~~~i~~~l~g~~~ 311 (324)
T COG0111 285 GSTDEAQERVAEIVAENIVRYLAGGPV 311 (324)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999986
No 2
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=8e-66 Score=489.20 Aligned_cols=277 Identities=81% Similarity=1.274 Sum_probs=258.8
Q ss_pred hchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCC
Q 021995 24 SRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGE 102 (304)
Q Consensus 24 ~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~ 102 (304)
+.+++++ .++|+||||++.++|+|++ |+++|.++||.|+|++|+|+.+||||++++||++.|++...++.+++|.
T Consensus 109 ~~~~~e~l~~ap~LK~I~~~g~G~D~i----Dl~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~ 184 (386)
T PLN03139 109 AYVTAERIKKAKNLELLLTAGIGSDHI----DLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGE 184 (386)
T ss_pred CCCCHHHHhhCCCccEEEECCcccccc----CHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCC
Confidence 4688776 7899999999999999855 5999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCC
Q 021995 103 WNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP 182 (304)
Q Consensus 103 w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p 182 (304)
|........+++|.|++|||||+|+||+.+|++|++|||+|++||++..+.+.....|+...+++++++++||+|++|+|
T Consensus 185 W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lP 264 (386)
T PLN03139 185 WNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTP 264 (386)
T ss_pred CccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCC
Confidence 98543223467999999999999999999999999999999999997655555566677777799999999999999999
Q ss_pred CChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcC
Q 021995 183 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 262 (304)
Q Consensus 183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~ 262 (304)
++++|+++|+++.|++||+|++|||++||++||+++|+++|++|+|.||+||||++||+|.++|||.+||+++|||+||.
T Consensus 265 lt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~ 344 (386)
T PLN03139 265 LTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGT 344 (386)
T ss_pred CCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCCCCCCceeecCCccCCCCC
Q 021995 263 TIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 304 (304)
Q Consensus 263 t~e~~~~~~~~~~~~l~~~~~g~~~~~~n~~~~~~~~~~~~~ 304 (304)
|.+++.++...+.+||.+|++|++++.+|.|+..|.+.++|+
T Consensus 345 t~~~~~r~~~~~~~nl~~~~~G~~~~~~~~i~~~~~~~~~~~ 386 (386)
T PLN03139 345 TIDAQLRYAAGVKDMLDRYFKGEDFPAQNYIVKEGKLASQYQ 386 (386)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCCCCcceeecCCccccccC
Confidence 999999999999999999999999999999999999999986
No 3
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=6.8e-65 Score=475.06 Aligned_cols=265 Identities=28% Similarity=0.420 Sum_probs=241.0
Q ss_pred cccccchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhh
Q 021995 17 SGFLRSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGH 95 (304)
Q Consensus 17 ~~~~~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~ 95 (304)
++++.+..++++++ +++|+||+|++.++|+|+ +|+++|.++||.|+|+||+++.+||||++++||+++|++...+
T Consensus 47 d~li~~~~~~~~~~l~~~p~Lk~I~~~g~G~d~----id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~ 122 (323)
T PRK15409 47 EGLLGSGEKVDAALLEKMPKLRAASTISVGYDN----FDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVA 122 (323)
T ss_pred eEEEEcCCCCCHHHHhhCCCCeEEEECceeccc----ccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHH
Confidence 35555556888886 789999999999999984 5699999999999999999999999999999999999999999
Q ss_pred HHHHhCCccccc-ccccccccCCCEEEEEeeChhhHHHHHHhc-cCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCc
Q 021995 96 HQVISGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 173 (304)
Q Consensus 96 ~~~~~~~w~~~~-~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~-~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~ 173 (304)
+.+++|.|.... ....+.+|.|+|+||||+|+||+.+|++++ +|||+|++||+... .+.....++.+. ++++++++
T Consensus 123 ~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~-~~~~~~~~~~~~-~l~ell~~ 200 (323)
T PRK15409 123 ERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHH-KEAEERFNARYC-DLDTLLQE 200 (323)
T ss_pred HHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCc-hhhHHhcCcEec-CHHHHHHh
Confidence 999999996431 112467999999999999999999999998 99999999998642 233345566654 89999999
Q ss_pred CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCe
Q 021995 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ 253 (304)
Q Consensus 174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv 253 (304)
||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||+|.++|||.+|||
T Consensus 201 sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nv 280 (323)
T PRK15409 201 SDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNV 280 (323)
T ss_pred CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995 254 AMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF 287 (304)
Q Consensus 254 ~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~ 287 (304)
++|||+||.|.+++.++...+.+||.+|++|+++
T Consensus 281 ilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~ 314 (323)
T PRK15409 281 VAVPHIGSATHETRYNMAACAVDNLIDALQGKVE 314 (323)
T ss_pred EEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999976
No 4
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=3.3e-64 Score=478.38 Aligned_cols=275 Identities=47% Similarity=0.827 Sum_probs=254.8
Q ss_pred hhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhC
Q 021995 23 SSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISG 101 (304)
Q Consensus 23 ~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~ 101 (304)
++.+++++ +++|+||||++.++|+|++ |+++|.++||+|+|++|+++.+||||++++||++.|++..+++.+++|
T Consensus 101 ~~~~~~e~l~~~p~LK~I~~~g~G~D~i----d~~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g 176 (385)
T PRK07574 101 PAYLTAERIAKAPNLKLAITAGIGSDHV----DLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEG 176 (385)
T ss_pred CCCCCHHHHhhCCCCcEEEECCcccccc----cHHHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhC
Confidence 35688776 7899999999999999854 599999999999999999999999999999999999999999999999
Q ss_pred CcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcC
Q 021995 102 EWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT 181 (304)
Q Consensus 102 ~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~ 181 (304)
.|........+++|.|++|||||+|+||+.+|++|++|||+|++|||+..+.+.....++....++++++++||+|++|+
T Consensus 177 ~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~l 256 (385)
T PRK07574 177 GWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHC 256 (385)
T ss_pred CCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcC
Confidence 99864322246789999999999999999999999999999999999765445555667776679999999999999999
Q ss_pred CCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCc
Q 021995 182 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 261 (304)
Q Consensus 182 p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~ 261 (304)
|++++|+++|+++.|++||+|++|||+|||++||+++|++||++|+|+||+||||++||+|.+||||.+|||++|||+||
T Consensus 257 Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag 336 (385)
T PRK07574 257 PLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISG 336 (385)
T ss_pred CCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHcCCCCCCCceeecCCccCC
Q 021995 262 TTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAP 301 (304)
Q Consensus 262 ~t~e~~~~~~~~~~~~l~~~~~g~~~~~~n~~~~~~~~~~ 301 (304)
.|.++++++...+.+||.+|++|+++..++.|+..+.++|
T Consensus 337 ~T~e~~~~~~~~~~~ni~~~~~G~~~~~~~~~~~~~~~~~ 376 (385)
T PRK07574 337 TTLSAQARYAAGTREILECFFEGRPIRDEYLIVDGGRLAG 376 (385)
T ss_pred CcHHHHHHHHHHHHHHHHHHHcCCCCCCCceEecCCcccC
Confidence 9999999999999999999999999988999999988887
No 5
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=3.3e-64 Score=468.89 Aligned_cols=259 Identities=36% Similarity=0.600 Sum_probs=241.9
Q ss_pred hhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhC
Q 021995 23 SSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISG 101 (304)
Q Consensus 23 ~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~ 101 (304)
...+++.+ +++|+||+|+..++|+|+ +|+++|+++||.|+|+|++++++||||++++||++.|++...++.+++|
T Consensus 53 ~~~i~~~~l~~~p~LKlIa~~~~G~D~----vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g 128 (324)
T COG1052 53 NDRIDAEVLEKLPGLKLIATRSAGYDN----VDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREG 128 (324)
T ss_pred CCCcCHHHHHhCCCcEEEEEeccccCc----ccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcC
Confidence 67788886 778999999999999995 5699999999999999999999999999999999999999999999999
Q ss_pred Cccccc--ccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEE
Q 021995 102 EWNVAG--VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV 179 (304)
Q Consensus 102 ~w~~~~--~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~ 179 (304)
+|...+ ....+.+++|||+||||+|+||+++|+++++|||+|.+|+|++. ++..+..+..+.+ +++++++||+|++
T Consensus 129 ~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l 206 (324)
T COG1052 129 NWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISL 206 (324)
T ss_pred cccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEE
Confidence 998763 22356789999999999999999999999999999999999876 5555666677774 9999999999999
Q ss_pred cCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCC---eEEc
Q 021995 180 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN---QAMT 256 (304)
Q Consensus 180 ~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~n---v~lT 256 (304)
|||++++|+++||++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||.+.++||+.++| |++|
T Consensus 207 ~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvlt 286 (324)
T COG1052 207 HCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLT 286 (324)
T ss_pred eCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEc
Confidence 9999999999999999999999999999999999999999999999999999999999999988999998877 9999
Q ss_pred cCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995 257 PHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF 287 (304)
Q Consensus 257 PHia~~t~e~~~~~~~~~~~~l~~~~~g~~~ 287 (304)
||+|++|.|++.+|...+.+|+..|++|+..
T Consensus 287 PHia~at~ea~~~m~~~~~~nl~~~~~g~~~ 317 (324)
T COG1052 287 PHIASATEEARKAMAELALENLEAFFDGGVP 317 (324)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999998876
No 6
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=6.4e-64 Score=467.98 Aligned_cols=262 Identities=27% Similarity=0.439 Sum_probs=237.1
Q ss_pred ccccchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhH
Q 021995 18 GFLRSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHH 96 (304)
Q Consensus 18 ~~~~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~ 96 (304)
.++...+++++++ +++|+||+|++.++|+|++ |+++|.++||.|+|+||+++.+||||++++||+++|++..+++
T Consensus 48 ~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i----d~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~ 123 (317)
T PRK06487 48 VAISNKVALDAAALAAAPQLKLILVAATGTNNV----DLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQ 123 (317)
T ss_pred EEEEeCCCCCHHHHhhCCCCeEEEEcCcccccc----CHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHH
Confidence 4555566788876 7789999999999999854 5999999999999999999999999999999999999999999
Q ss_pred HHHhCCcccccc----cccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcC
Q 021995 97 QVISGEWNVAGV----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP 172 (304)
Q Consensus 97 ~~~~~~w~~~~~----~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~ 172 (304)
.+++|.|..... ...+++|.||||||||+|+||+.+|+++++|||+|++||+.... . .... .+++++++
T Consensus 124 ~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~-----~~~~-~~l~ell~ 196 (317)
T PRK06487 124 AVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-A-----RPDR-LPLDELLP 196 (317)
T ss_pred HHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-c-----cccc-cCHHHHHH
Confidence 999999975321 12346899999999999999999999999999999999985321 1 1222 48999999
Q ss_pred cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccC--C
Q 021995 173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRY--M 250 (304)
Q Consensus 173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~--~ 250 (304)
+||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||++.++|||. +
T Consensus 197 ~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~ 276 (317)
T PRK06487 197 QVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDI 276 (317)
T ss_pred hCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred CCeEEccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 021995 251 PNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQ 290 (304)
Q Consensus 251 ~nv~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~~~~ 290 (304)
|||++|||+||+|.++++++...+.+||.+|++|+|++.+
T Consensus 277 pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~v 316 (317)
T PRK06487 277 PRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPLRVV 316 (317)
T ss_pred CCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence 9999999999999999999999999999999999987543
No 7
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-63 Score=463.87 Aligned_cols=258 Identities=22% Similarity=0.367 Sum_probs=234.2
Q ss_pred ccccchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhH
Q 021995 18 GFLRSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHH 96 (304)
Q Consensus 18 ~~~~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~ 96 (304)
.++...+++++++ +.+|+||+|++.++|+|+ +|+++|+++||.|+|+||+++.+||||++++||+++|++..+++
T Consensus 45 ~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~----id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~ 120 (311)
T PRK08410 45 IIITNKVVIDKEVLSQLPNLKLICITATGTNN----VDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDR 120 (311)
T ss_pred EEEECCCCCCHHHHhhCCCCeEEEEccccccc----ccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHH
Confidence 4454566788886 788999999999999985 55999999999999999999999999999999999999999999
Q ss_pred HHHhCCcccccc-c---ccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcC
Q 021995 97 QVISGEWNVAGV-A---YRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP 172 (304)
Q Consensus 97 ~~~~~~w~~~~~-~---~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~ 172 (304)
.+++|.|.+... . ..+++|.||||||||+|+||+.+|+++++|||+|++|||+.... ..++.. .+++++++
T Consensus 121 ~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~~-~~l~ell~ 195 (311)
T PRK08410 121 YVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYER-VSLEELLK 195 (311)
T ss_pred HHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----ccCcee-ecHHHHhh
Confidence 999999975321 0 12468999999999999999999999999999999999964321 223443 48999999
Q ss_pred cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCC--
Q 021995 173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYM-- 250 (304)
Q Consensus 173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~-- 250 (304)
+||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|. |+||||++||++.++|||.+
T Consensus 196 ~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~ 274 (311)
T PRK08410 196 TSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKN 274 (311)
T ss_pred cCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCC
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999986
Q ss_pred -CCeEEccCCCcCCHHHHHHHHHHHHHHHHHHHcCC
Q 021995 251 -PNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285 (304)
Q Consensus 251 -~nv~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~ 285 (304)
|||++|||+||+|.+++.++...+.+||.+|++|+
T Consensus 275 ~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~ 310 (311)
T PRK08410 275 KEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGG 310 (311)
T ss_pred CCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 89999999999999999999999999999999986
No 8
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-62 Score=457.38 Aligned_cols=258 Identities=26% Similarity=0.417 Sum_probs=233.0
Q ss_pred ccccchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhH
Q 021995 18 GFLRSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHH 96 (304)
Q Consensus 18 ~~~~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~ 96 (304)
.++.+.+++++++ .++|+||+|++.++|+|+ +|+++|.++||.|+|+||+++.+||||++++||++.|++...++
T Consensus 47 ~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~----id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~~~~~~~ 122 (314)
T PRK06932 47 IVITSKVLFTRETLAQLPKLKLIAITATGTNN----VDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMGWYR 122 (314)
T ss_pred EEEEeCCCCCHHHHhhCcCCeEEEEecccccc----cCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHhChHHHHH
Confidence 4555667788776 789999999999999985 45899999999999999999999999999999999999999999
Q ss_pred HHHhCCccccc-c---cccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcC
Q 021995 97 QVISGEWNVAG-V---AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP 172 (304)
Q Consensus 97 ~~~~~~w~~~~-~---~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~ 172 (304)
.++++.|.... . ...+++|.|+||||||+|.||+.+|+++++|||+|++|++.... . ... .+.+++++++
T Consensus 123 ~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~-~----~~~-~~~~l~ell~ 196 (314)
T PRK06932 123 DQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS-V----CRE-GYTPFEEVLK 196 (314)
T ss_pred HHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc-c----ccc-ccCCHHHHHH
Confidence 99999997531 1 11346899999999999999999999999999999999975321 1 111 2358999999
Q ss_pred cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCcc----
Q 021995 173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWR---- 248 (304)
Q Consensus 173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~---- 248 (304)
+||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|.||+||||++||++.++|||
T Consensus 197 ~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~ 276 (314)
T PRK06932 197 QADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAK 276 (314)
T ss_pred hCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCeEEccCCCcCCHHHHHHHHHHHHHHHHHHHcCC
Q 021995 249 YMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285 (304)
Q Consensus 249 ~~~nv~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~ 285 (304)
.+|||++|||+||+|.++++++...+.+||++|++|+
T Consensus 277 ~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g 313 (314)
T PRK06932 277 RLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQG 313 (314)
T ss_pred CCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 4899999999999999999999999999999999875
No 9
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=9.7e-62 Score=456.10 Aligned_cols=259 Identities=31% Similarity=0.494 Sum_probs=236.7
Q ss_pred chhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHh
Q 021995 22 SSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVIS 100 (304)
Q Consensus 22 ~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~ 100 (304)
+.+++++++ +++|+||||+++++|+|+ +|+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++
T Consensus 53 ~~~~~~~~~l~~~p~Lk~I~~~~~G~d~----id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~ 128 (333)
T PRK13243 53 LSERIDCEVFEAAPRLRIVANYAVGYDN----IDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRS 128 (333)
T ss_pred CCCCCCHHHHhhCCCCeEEEecCccccc----cCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHc
Confidence 345788887 788999999999999985 559999999999999999999999999999999999999999999999
Q ss_pred CCcccccc-----cccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCC
Q 021995 101 GEWNVAGV-----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCD 175 (304)
Q Consensus 101 ~~w~~~~~-----~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aD 175 (304)
|.|..... ...+.+|.|++|||||+|.||+.+|++|++|||+|++|||++.. ......++.. .++++++++||
T Consensus 129 g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~~~~~-~~l~ell~~aD 206 (333)
T PRK13243 129 GEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKP-EAEKELGAEY-RPLEELLRESD 206 (333)
T ss_pred CCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHHHcCCEe-cCHHHHHhhCC
Confidence 99974311 11357899999999999999999999999999999999997543 2334455554 48999999999
Q ss_pred EEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEE
Q 021995 176 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM 255 (304)
Q Consensus 176 vVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~l 255 (304)
+|++|+|++++|+++++++.|+.||+|++|||+|||++||+++|+++|++|+|.||+||||++||++ ++|||.+|||++
T Consensus 207 iV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~nvil 285 (333)
T PRK13243 207 FVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVL 285 (333)
T ss_pred EEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-CchhhcCCCEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred ccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995 256 TPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF 287 (304)
Q Consensus 256 TPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~ 287 (304)
|||+||+|.+++.++...+.+||.+|++|+++
T Consensus 286 TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~ 317 (333)
T PRK13243 286 APHIGSATFEAREGMAELVAENLIAFKRGEVP 317 (333)
T ss_pred CCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999976
No 10
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-61 Score=464.57 Aligned_cols=264 Identities=29% Similarity=0.456 Sum_probs=239.8
Q ss_pred ccchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHH
Q 021995 20 LRSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQV 98 (304)
Q Consensus 20 ~~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~ 98 (304)
+++.+++++++ +.+|+||+|++.++|+|+ +|+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+
T Consensus 59 ~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~----id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~ 134 (409)
T PRK11790 59 IRSRTQLTEEVLAAAEKLVAIGCFCIGTNQ----VDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKA 134 (409)
T ss_pred EeCCCCCCHHHHhhCCCCeEEEECceeccc----ccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 45667888887 778999999999999985 5699999999999999999999999999999999999999999999
Q ss_pred HhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEE
Q 021995 99 ISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVV 178 (304)
Q Consensus 99 ~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi 178 (304)
++|.|.+.. ..+.+|.||||||||+|+||+.+|+++++|||+|++||++... ...++....++++++++||+|+
T Consensus 135 ~~g~w~~~~--~~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~----~~~~~~~~~~l~ell~~sDiVs 208 (409)
T PRK11790 135 HRGGWNKSA--AGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKL----PLGNARQVGSLEELLAQSDVVS 208 (409)
T ss_pred HcCcccccc--cCcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCccc----ccCCceecCCHHHHHhhCCEEE
Confidence 999998643 2467999999999999999999999999999999999985421 1123445568999999999999
Q ss_pred EcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCC----CCCccCCCCeE
Q 021995 179 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPK----DHPWRYMPNQA 254 (304)
Q Consensus 179 ~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~----~~~l~~~~nv~ 254 (304)
+|+|+|++|+++++++.|++||+|++|||+|||++||++||+++|++|+|.||+||||++||++. ++|||.+|||+
T Consensus 209 lh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvi 288 (409)
T PRK11790 209 LHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVI 288 (409)
T ss_pred EcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999886 47999999999
Q ss_pred EccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC-CCCcee
Q 021995 255 MTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF-PVQNYI 293 (304)
Q Consensus 255 lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~-~~~n~~ 293 (304)
+|||+||+|.++++++...+.+|+.+|++|+++ +.+|..
T Consensus 289 lTPHia~~t~ea~~~~~~~~~~nl~~~~~~~~~~~~vn~~ 328 (409)
T PRK11790 289 LTPHIGGSTQEAQENIGLEVAGKLVKYSDNGSTLSAVNFP 328 (409)
T ss_pred ECCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCcCcceecc
Confidence 999999999999999999999999999998877 555543
No 11
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=1.6e-60 Score=449.82 Aligned_cols=262 Identities=30% Similarity=0.357 Sum_probs=234.9
Q ss_pred ccccchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCC---ChhHHHHHHHHHHHHHHhCcch
Q 021995 18 GFLRSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGS---NVVSVAEDELMRILILVRNFLP 93 (304)
Q Consensus 18 ~~~~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~---~~~~vAE~al~~~L~~~R~~~~ 93 (304)
.++.....+++.+ ..+|+||+|++.++|+|++ |+++|.++||.|+|+|++ ++.+||||+++++|+++|++..
T Consensus 64 ~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i----d~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~ 139 (347)
T PLN02928 64 ICVPKMMRLDADIIARASQMKLIMQFGVGLEGV----DVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNE 139 (347)
T ss_pred EEEECCCCCCHHHHhcCCCceEEEECCcccCcC----cHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHH
Confidence 3444456788776 7789999999999999855 599999999999999986 7899999999999999999999
Q ss_pred hhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH------------hcCc
Q 021995 94 GHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK------------ETGA 161 (304)
Q Consensus 94 ~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~------------~~g~ 161 (304)
..+.++++.|.. ..+.+|.|+++||||+|.||+.+|++|++|||+|++|||+........ ....
T Consensus 140 ~~~~~~~~~w~~----~~~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (347)
T PLN02928 140 MQISLKARRLGE----PIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG 215 (347)
T ss_pred HHHHHHcCCccc----ccccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC
Confidence 999999999964 235689999999999999999999999999999999999642211110 0012
Q ss_pred eecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCC
Q 021995 162 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA 241 (304)
Q Consensus 162 ~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~ 241 (304)
...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||+
T Consensus 216 -~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~ 294 (347)
T PLN02928 216 -GHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPF 294 (347)
T ss_pred -cccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCC
Confidence 3458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCeEEccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCCC
Q 021995 242 PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288 (304)
Q Consensus 242 ~~~~~l~~~~nv~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~~ 288 (304)
+.++|||.+|||++|||+||+|.++++++...+.+|+.+|++|+++.
T Consensus 295 ~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~ 341 (347)
T PLN02928 295 DPDDPILKHPNVIITPHVAGVTEYSYRSMGKIVGDAALQLHAGRPLT 341 (347)
T ss_pred CCCChhhcCCCEEECCcCCCChHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999999999999999999873
No 12
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=3.3e-60 Score=469.70 Aligned_cols=267 Identities=33% Similarity=0.519 Sum_probs=244.0
Q ss_pred ccchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHH
Q 021995 20 LRSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQV 98 (304)
Q Consensus 20 ~~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~ 98 (304)
.++.+++++++ +++|+||||++.++|+|+ +|+++|.++||.|+|+||+++.+||||++++||+++|++..+++.+
T Consensus 46 ~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~----id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~ 121 (525)
T TIGR01327 46 VRSATKVTEEVIAAAPKLKVIGRAGVGVDN----IDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASL 121 (525)
T ss_pred EcCCCCcCHHHHhhCCCceEEEECCcccch----hcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 35667899887 778999999999999984 5699999999999999999999999999999999999999999999
Q ss_pred HhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEE
Q 021995 99 ISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVV 178 (304)
Q Consensus 99 ~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi 178 (304)
++|.|.+.. ..+.+|.||+|||||+|+||+.+|++|++|||+|++|||+. +.+...+.++...+++++++++||+|+
T Consensus 122 ~~g~W~~~~--~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g~~~~~~l~ell~~aDvV~ 198 (525)
T TIGR01327 122 KEGEWDRKA--FMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYI-SPERAEQLGVELVDDLDELLARADFIT 198 (525)
T ss_pred HcCCccccc--cCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhHHHhcCCEEcCCHHHHHhhCCEEE
Confidence 999998643 24678999999999999999999999999999999999853 334455667766668999999999999
Q ss_pred EcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccC
Q 021995 179 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPH 258 (304)
Q Consensus 179 ~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPH 258 (304)
+|+|++++|+++++++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||+ .++|||.+|||++|||
T Consensus 199 l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~-~~~pL~~~~nvi~TPH 277 (525)
T TIGR01327 199 VHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPP-TDNPLFDLDNVIATPH 277 (525)
T ss_pred EccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCC-CCChhhcCCCeEECCC
Confidence 999999999999999999999999999999999999999999999999999999999999995 5899999999999999
Q ss_pred CCcCCHHHHHHHHHHHHHHHHHHHcCCCC-CCCceee
Q 021995 259 VSGTTIDAQLRYAAGVKDMLDRYFKGEDF-PVQNYIV 294 (304)
Q Consensus 259 ia~~t~e~~~~~~~~~~~~l~~~~~g~~~-~~~n~~~ 294 (304)
+|++|.+++.++...+.+|+.+|++|+++ +.+|.+.
T Consensus 278 ia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~ 314 (525)
T TIGR01327 278 LGASTREAQENVATQVAEQVLDALKGLPVPNAVNAPG 314 (525)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHcCCCCCceeeCCC
Confidence 99999999999999999999999999976 5555543
No 13
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=5.2e-60 Score=450.46 Aligned_cols=265 Identities=22% Similarity=0.270 Sum_probs=233.2
Q ss_pred chhchhHHH-hcCCC--cEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHH
Q 021995 22 SSSRFSRHY-ASSGS--KKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQV 98 (304)
Q Consensus 22 ~~~~~~~~l-~~~~~--lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~ 98 (304)
..+.+++++ +.+|+ ||+|++.++|+|+ +|+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+
T Consensus 70 ~~~~i~~~~l~~~~~l~lk~I~~~~~G~D~----iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~ 145 (386)
T PLN02306 70 LTEDWGETLFSALSKAGGKAFSNMAVGYNN----VDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFM 145 (386)
T ss_pred CCCCcCHHHHHhCCcCCceEEEECCccccc----ccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 346788887 77775 6999999999985 4599999999999999999999999999999999999999999999
Q ss_pred HhCCcccc-cccccccccCCCEEEEEeeChhhHHHHHHhc-cCCCeEEEEcCCCCChhH--HHhcC------------ce
Q 021995 99 ISGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQL--EKETG------------AK 162 (304)
Q Consensus 99 ~~~~w~~~-~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~-~~G~~V~~~dr~~~~~~~--~~~~g------------~~ 162 (304)
++|.|... .....+.+|.|+||||||+|.||+.+|++++ +|||+|++||++...... ....+ ..
T Consensus 146 ~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 225 (386)
T PLN02306 146 RAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWK 225 (386)
T ss_pred HcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhccccccccccccccc
Confidence 99988532 1112467899999999999999999999985 999999999986532111 01111 12
Q ss_pred ecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCC
Q 021995 163 FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP 242 (304)
Q Consensus 163 ~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~ 242 (304)
...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||++
T Consensus 226 ~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~ 305 (386)
T PLN02306 226 RASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYM 305 (386)
T ss_pred ccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCC
Confidence 23589999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCccCCCCeEEccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC-CCCc
Q 021995 243 KDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF-PVQN 291 (304)
Q Consensus 243 ~~~~l~~~~nv~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~-~~~n 291 (304)
++|||++|||++|||+||+|.++++++...+.+||.+|++|+++ +.+|
T Consensus 306 -~~~L~~~pNVilTPHiag~T~e~~~~~~~~~~~ni~~~~~g~~~~~~~~ 354 (386)
T PLN02306 306 -KPGLADMKNAVVVPHIASASKWTREGMATLAALNVLGKLKGYPVWGDPN 354 (386)
T ss_pred -cchHhhCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCccccc
Confidence 47899999999999999999999999999999999999999988 5555
No 14
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-60 Score=429.56 Aligned_cols=266 Identities=32% Similarity=0.505 Sum_probs=249.1
Q ss_pred cccchhchhHHH-h-cCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhH
Q 021995 19 FLRSSSRFSRHY-A-SSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHH 96 (304)
Q Consensus 19 ~~~~~~~~~~~l-~-~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~ 96 (304)
.+||.|++++++ + .+.+||+|++.++|+| |+|+.+|.++||.|.|+|.+|+.++||+++++++++.|++.+...
T Consensus 52 iVrs~tkvtadvl~aa~~~lkvVgrag~G~d----NVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~ 127 (406)
T KOG0068|consen 52 IVRSKTKVTADVLEAAAGGLKVVGRAGIGVD----NVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASA 127 (406)
T ss_pred EEEeCCeecHHHHHhhcCCeEEEEecccCcc----ccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhhe
Confidence 689999999997 4 4678999999999998 778999999999999999999999999999999999999999999
Q ss_pred HHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCE
Q 021995 97 QVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176 (304)
Q Consensus 97 ~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDv 176 (304)
.+++|+|++.. +.|.+|.|||+||+|+|+||+.+|++++.+||+|++||+- .+.+.+...|++.. +++|+++.||+
T Consensus 128 s~k~g~wnr~~--~~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi-~~~~~~~a~gvq~v-sl~Eil~~ADF 203 (406)
T KOG0068|consen 128 SMKEGKWNRVK--YLGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPI-TPMALAEAFGVQLV-SLEEILPKADF 203 (406)
T ss_pred eeecCceeecc--eeeeEEeccEEEEeecccchHHHHHHHHhcCceEEeecCC-CchHHHHhccceee-eHHHHHhhcCE
Confidence 99999999876 4688999999999999999999999999999999999984 35667788898876 89999999999
Q ss_pred EEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCC--CCCccCCCCeE
Q 021995 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPK--DHPWRYMPNQA 254 (304)
Q Consensus 177 Vi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~--~~~l~~~~nv~ 254 (304)
|.+|+|++|+|+++++.+.|++||+|..+||++||.+||+++|++||++|++.||++|||+.||... ++.|..+|||+
T Consensus 204 itlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi 283 (406)
T KOG0068|consen 204 ITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVI 283 (406)
T ss_pred EEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCcee
Confidence 9999999999999999999999999999999999999999999999999999999999999999765 78899999999
Q ss_pred EccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCce
Q 021995 255 MTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNY 292 (304)
Q Consensus 255 lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~~~~n~ 292 (304)
+|||+|++|.|++.+++..+.+++..|.+|.....+|.
T Consensus 284 ~TpHlgasT~EAq~~iaievaea~~~~~~~~~~g~Vna 321 (406)
T KOG0068|consen 284 VTPHLGASTEEAQSRIAIEVAEAVSDYINGNSAGSVNA 321 (406)
T ss_pred ecCccccchHHHHHHHHHHHHHHHHHHhccCccceech
Confidence 99999999999999999999999999999955565664
No 15
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.8e-59 Score=463.25 Aligned_cols=265 Identities=31% Similarity=0.522 Sum_probs=242.7
Q ss_pred ccchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHH
Q 021995 20 LRSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQV 98 (304)
Q Consensus 20 ~~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~ 98 (304)
.++.+++++++ +++|+||||++.++|+|+ +|+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+
T Consensus 48 ~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~----id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~ 123 (526)
T PRK13581 48 VRSATKVTAEVLEAAKNLKVIGRAGVGVDN----VDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASL 123 (526)
T ss_pred EcCCCCCCHHHHhhCCCCeEEEECCccccc----ccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 35567888887 778999999999999985 5699999999999999999999999999999999999999999999
Q ss_pred HhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEE
Q 021995 99 ISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVV 178 (304)
Q Consensus 99 ~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi 178 (304)
++|.|.+.. ..+.+|.||+|||||+|+||+.+|++|++|||+|++|||+. +.+.....++... ++++++++||+|+
T Consensus 124 ~~g~W~~~~--~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g~~~~-~l~ell~~aDiV~ 199 (526)
T PRK13581 124 KAGKWERKK--FMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI-SPERAAQLGVELV-SLDELLARADFIT 199 (526)
T ss_pred HcCCCCccC--ccccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhHHHhcCCEEE-cHHHHHhhCCEEE
Confidence 999997643 24678999999999999999999999999999999999864 3344456677766 8999999999999
Q ss_pred EcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccC
Q 021995 179 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPH 258 (304)
Q Consensus 179 ~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPH 258 (304)
+|+|++++|+++++++.|++||+|++|||+|||++||++||+++|++|+|.||+||||++||++ ++|||.+|||++|||
T Consensus 200 l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvilTPH 278 (526)
T PRK13581 200 LHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPT-DSPLFELPNVVVTPH 278 (526)
T ss_pred EccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCC-CchhhcCCCeeEcCc
Confidence 9999999999999999999999999999999999999999999999999999999999999976 899999999999999
Q ss_pred CCcCCHHHHHHHHHHHHHHHHHHHcCCCC-CCCcee
Q 021995 259 VSGTTIDAQLRYAAGVKDMLDRYFKGEDF-PVQNYI 293 (304)
Q Consensus 259 ia~~t~e~~~~~~~~~~~~l~~~~~g~~~-~~~n~~ 293 (304)
+|++|.++++++...+.+|+.+|++|+++ +.+|..
T Consensus 279 ia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~ 314 (526)
T PRK13581 279 LGASTAEAQENVAIQVAEQVIDALRGGPVPNAVNLP 314 (526)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHcCCCcCceeeCC
Confidence 99999999999999999999999999987 444443
No 16
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=1.3e-57 Score=420.90 Aligned_cols=251 Identities=40% Similarity=0.649 Sum_probs=236.4
Q ss_pred hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccc
Q 021995 31 ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAY 110 (304)
Q Consensus 31 ~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~ 110 (304)
..+|++|+|.++++|+|++ |+++|++|||+|+|+|+.+..+|||++++++|.+.|++..+++++++|.|.+.....
T Consensus 80 a~~p~lK~i~t~~vG~D~v----Dl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~ 155 (336)
T KOG0069|consen 80 ALSPNLKLIVTMSVGYDHV----DLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWP 155 (336)
T ss_pred hcCCCeeEEEEeecccchh----hHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCcc
Confidence 3459999999999999965 599999999999999999999999999999999999999999999999995443334
Q ss_pred cccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 111 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 111 ~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
.+..+.||||||+|+|+||+.+|++|++||+.+.+++|++...+.+.+.+.+. .++++++.+||+|++|||+|++|+++
T Consensus 156 ~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~-~d~~~~~~~sD~ivv~~pLt~~T~~l 234 (336)
T KOG0069|consen 156 LGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEF-VDIEELLANSDVIVVNCPLTKETRHL 234 (336)
T ss_pred ccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccc-cCHHHHHhhCCEEEEecCCCHHHHHH
Confidence 57789999999999999999999999999988999999887777777777764 58999999999999999999999999
Q ss_pred ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHHH
Q 021995 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRY 270 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~~ 270 (304)
+|++.|.+||+|+++||++||.++|++++++||++|+|.|++||||++|| +.++||++++|+++|||+++.|.+++.+|
T Consensus 235 iNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-~~~~~l~~~dnvv~~PHigs~t~~t~~~m 313 (336)
T KOG0069|consen 235 INKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-PVDHPLLTLDNVVILPHIGSATLETREKM 313 (336)
T ss_pred hhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-CCCcchhcccceeEecccccCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 88999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCC
Q 021995 271 AAGVKDMLDRYFKGEDF 287 (304)
Q Consensus 271 ~~~~~~~l~~~~~g~~~ 287 (304)
+..+..|+.+++.|+|+
T Consensus 314 ~~~v~~n~~~~~~g~~~ 330 (336)
T KOG0069|consen 314 AEIVLNNLLAFFSGKPL 330 (336)
T ss_pred HHHHHHHHHHHHccCCC
Confidence 99999999999999988
No 17
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-57 Score=427.60 Aligned_cols=261 Identities=18% Similarity=0.237 Sum_probs=232.3
Q ss_pred cccc-chhchhHHH-hcCC--CcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcch
Q 021995 18 GFLR-SSSRFSRHY-ASSG--SKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLP 93 (304)
Q Consensus 18 ~~~~-~~~~~~~~l-~~~~--~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~ 93 (304)
+++. ..+++++++ +++| +||+|++.++|+|+ +|+++|+++||.|+|+||+++.+||||++++||++.|++..
T Consensus 48 ~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~----id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~ 123 (330)
T PRK12480 48 GVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDM----YDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPD 123 (330)
T ss_pred EEEEecCCCCCHHHHHhhhhcCceEEEecccccch----hhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 4443 445899986 7776 89999999999985 56999999999999999999999999999999999999999
Q ss_pred hhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCc
Q 021995 94 GHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 173 (304)
Q Consensus 94 ~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~ 173 (304)
+++.+++|.|.+... ..+++|.|++|||||+|.||+.+|++|++||++|++||+++..... ......++++++++
T Consensus 124 ~~~~~~~~~~~w~~~-~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~----~~~~~~~l~ell~~ 198 (330)
T PRK12480 124 IERRVQAHDFTWQAE-IMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD----FLTYKDSVKEAIKD 198 (330)
T ss_pred HHHHHHhCCcccccc-cCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh----hhhccCCHHHHHhc
Confidence 889999987654321 2467899999999999999999999999999999999987532211 12344589999999
Q ss_pred CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCC-----------
Q 021995 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP----------- 242 (304)
Q Consensus 174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~----------- 242 (304)
||+|++|+|.+++|.++++++.|++||+|++|||+|||.+||+++|+++|++|+|.||+||||++||++
T Consensus 199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~ 278 (330)
T PRK12480 199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDID 278 (330)
T ss_pred CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999962
Q ss_pred --CCCCccCCCCeEEccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995 243 --KDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF 287 (304)
Q Consensus 243 --~~~~l~~~~nv~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~ 287 (304)
..+|||.+|||++|||+|++|.++++++...+.+|+.+|++|+..
T Consensus 279 ~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~~~~~~~~ 325 (330)
T PRK12480 279 DKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTC 325 (330)
T ss_pred chhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 124799999999999999999999999999999999999999876
No 18
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=8.2e-57 Score=418.73 Aligned_cols=260 Identities=20% Similarity=0.271 Sum_probs=223.2
Q ss_pred HHhcCCCcEEEEEeeecccCCCCccc-HHHHHhCCcEEEEcCC-CChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccc
Q 021995 29 HYASSGSKKIVGVFYKGNEYASMNPN-FLAAAAAGLTVAEVTG-SNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVA 106 (304)
Q Consensus 29 ~l~~~~~lk~i~~~~~G~d~~~~~~d-~~~~~~~gI~v~n~~g-~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~ 106 (304)
.+...++||||++.++|+|+++.... ...+.++||.|+|+++ .++.+||||++++||++.|++..+...++++.|...
T Consensus 50 ~~l~~~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~ 129 (312)
T PRK15469 50 EMLAGRDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPL 129 (312)
T ss_pred HHhccCCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCC
Confidence 33345899999999999997631000 0114568999999864 689999999999999999999988888899999742
Q ss_pred cccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 021995 107 GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK 186 (304)
Q Consensus 107 ~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~ 186 (304)
...++.|+||||||+|.||+.+|++|++|||+|.+||++.......... ....++++++++||+|++|+|+|++
T Consensus 130 ----~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~--~~~~~l~e~l~~aDvvv~~lPlt~~ 203 (312)
T PRK15469 130 ----PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSF--AGREELSAFLSQTRVLINLLPNTPE 203 (312)
T ss_pred ----CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceee--cccccHHHHHhcCCEEEECCCCCHH
Confidence 3457999999999999999999999999999999999865432111111 1235899999999999999999999
Q ss_pred hhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHH
Q 021995 187 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDA 266 (304)
Q Consensus 187 t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~ 266 (304)
|+++++++.|++||+|++|||+|||++||+++|+++|++|+|.||+||||++||+|.++|||.+|||++|||+||.|.+.
T Consensus 204 T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~ 283 (312)
T PRK15469 204 TVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPA 283 (312)
T ss_pred HHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCceeecCCc
Q 021995 267 QLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGE 298 (304)
Q Consensus 267 ~~~~~~~~~~~l~~~~~g~~~~~~n~~~~~~~ 298 (304)
++...+.+|+++|++|+++ .|.|+++..
T Consensus 284 --~~~~~~~~n~~~~~~g~~~--~~~V~~~~g 311 (312)
T PRK15469 284 --EAVEYISRTIAQLEKGERV--CGQVDRARG 311 (312)
T ss_pred --HHHHHHHHHHHHHHcCCCC--cccCCcccC
Confidence 5678889999999999986 677766543
No 19
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=3.2e-56 Score=418.66 Aligned_cols=260 Identities=22% Similarity=0.275 Sum_probs=233.2
Q ss_pred ccchhchhHHH-hcCCC--cEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhH
Q 021995 20 LRSSSRFSRHY-ASSGS--KKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHH 96 (304)
Q Consensus 20 ~~~~~~~~~~l-~~~~~--lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~ 96 (304)
+++.+++++++ +.+|+ ||+|++.++|+|+ +|+++|+++||.|+|+||+++.+||||++++||+++|++...++
T Consensus 51 ~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~d~----id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~ 126 (332)
T PRK08605 51 LSQQIPLSEAIYKLLNELGIKQIAQRSAGFDT----YDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQT 126 (332)
T ss_pred EecCCCCCHHHHHhhhhcCceEEEEcccccch----hhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHH
Confidence 45668899887 77886 9999999999985 56999999999999999999999999999999999999999989
Q ss_pred HHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHh-ccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCC
Q 021995 97 QVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRL-KPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCD 175 (304)
Q Consensus 97 ~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l-~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aD 175 (304)
.+++|.|.+... ..+++|.|++|||||+|.||+.+|++| ++||++|++||++.... . ...+....++++++++||
T Consensus 127 ~~~~~~~~~~~~-~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~--~-~~~~~~~~~l~ell~~aD 202 (332)
T PRK08605 127 KVREHDFRWEPP-ILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAK--A-ATYVDYKDTIEEAVEGAD 202 (332)
T ss_pred HHHhCCcccccc-cccceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHh--H-HhhccccCCHHHHHHhCC
Confidence 999998854321 246789999999999999999999999 78999999999875322 1 123444568999999999
Q ss_pred EEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCC--CCCCC--------
Q 021995 176 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP--APKDH-------- 245 (304)
Q Consensus 176 vVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep--~~~~~-------- 245 (304)
+|++|+|.++.|+++++++.++.||+|++|||++||.++|+++|+++|++|+|.||+||||++|| +|.++
T Consensus 203 vIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~ 282 (332)
T PRK08605 203 IVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDP 282 (332)
T ss_pred EEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999998 45554
Q ss_pred ---CccCCCCeEEccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995 246 ---PWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF 287 (304)
Q Consensus 246 ---~l~~~~nv~lTPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~ 287 (304)
+||.+|||++|||+|++|.++++++...+.+|+.+|++|++.
T Consensus 283 ~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~~~~~~g~~~ 327 (332)
T PRK08605 283 LLESLINREDVILTPHIAFYTDAAVKNLIVDALDATLEVLQTGTT 327 (332)
T ss_pred hhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 499999999999999999999999999999999999999876
No 20
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-55 Score=408.11 Aligned_cols=245 Identities=22% Similarity=0.374 Sum_probs=219.1
Q ss_pred hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccc
Q 021995 31 ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAY 110 (304)
Q Consensus 31 ~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~ 110 (304)
..+++||||++.++|+|++ |+++|.+++|.++| +|.++.+||||++++||++.|++....+.+++|.|...
T Consensus 45 ~~~~~Lk~I~~~~aG~D~i----d~~~~~~~~i~~~~-~g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~---- 115 (303)
T PRK06436 45 VPGKKTKMIQSLSAGVDHI----DVSGIPENVVLCSN-AGAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS---- 115 (303)
T ss_pred CCCCCeEEEEECCcccCcc----cHHHHHhCCeEEEc-CCCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC----
Confidence 3568999999999999965 58899998888777 58889999999999999999999999999999999853
Q ss_pred cccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCce-ecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995 111 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-FEEDLDTMLPKCDIVVVNTPLTEKTRG 189 (304)
Q Consensus 111 ~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-~~~~l~ell~~aDvVi~~~p~~~~t~~ 189 (304)
.+++|.|++|||||+|+||+.+|+++++|||+|++|||+.... +.. ...++++++++||+|++|+|++++|++
T Consensus 116 ~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~ 189 (303)
T PRK06436 116 PTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND------GISSIYMEPEDIMKKSDFVLISLPLTDETRG 189 (303)
T ss_pred CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc------CcccccCCHHHHHhhCCEEEECCCCCchhhc
Confidence 3568999999999999999999999999999999999975321 222 145899999999999999999999999
Q ss_pred cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCC-cCCHHHHH
Q 021995 190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVS-GTTIDAQL 268 (304)
Q Consensus 190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia-~~t~e~~~ 268 (304)
+++++.|++||+|++|||+|||+++|+++|+++|++|++.||+||||++||++.++ .+|||++|||++ ++|.++++
T Consensus 190 li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~---~~~nviiTPHi~g~~t~e~~~ 266 (303)
T PRK06436 190 MINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET---NPDNVILSPHVAGGMSGEIMQ 266 (303)
T ss_pred CcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC---CCCCEEECCccccccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999998765 579999999986 48899999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCceeecC
Q 021995 269 RYAAGVKDMLDRYFKGEDFPVQNYIVKA 296 (304)
Q Consensus 269 ~~~~~~~~~l~~~~~g~~~~~~n~~~~~ 296 (304)
++...+.+||.+|++|++. |.++.+
T Consensus 267 ~~~~~~~~ni~~~~~g~~~---~~V~~~ 291 (303)
T PRK06436 267 PAVALAFENIKNFFEGKPK---NIVRKE 291 (303)
T ss_pred HHHHHHHHHHHHHHcCCCC---ceEchH
Confidence 9999999999999999874 545443
No 21
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=2.4e-54 Score=409.31 Aligned_cols=236 Identities=25% Similarity=0.421 Sum_probs=212.0
Q ss_pred ccchhchhHHHhcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHH
Q 021995 20 LRSSSRFSRHYASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVI 99 (304)
Q Consensus 20 ~~~~~~~~~~l~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~ 99 (304)
+++.|++++++..+++||+|+++++|+|++ |+++|.++||.|+|+||+|+.+||||++++||.+.|+.
T Consensus 43 v~s~t~v~~~ll~~~~Lk~I~~~~~G~D~i----D~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~-------- 110 (378)
T PRK15438 43 VRSVTKVNESLLAGKPIKFVGTATAGTDHV----DEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD-------- 110 (378)
T ss_pred EcCCCCCCHHHhcCCCCeEEEECccccccc----CHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC--------
Confidence 567889999987789999999999999966 48899999999999999999999999999999999852
Q ss_pred hCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEE
Q 021995 100 SGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV 179 (304)
Q Consensus 100 ~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~ 179 (304)
+.+|.|+||||||+|+||+.+|++|++|||+|++||+..... .... .+.++++++++||+|++
T Consensus 111 ------------g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~~-~~~~L~ell~~sDiI~l 173 (378)
T PRK15438 111 ------------GFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDEG-DFRSLDELVQEADILTF 173 (378)
T ss_pred ------------CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----cccc-ccCCHHHHHhhCCEEEE
Confidence 347999999999999999999999999999999999743211 1111 24589999999999999
Q ss_pred cCCCChh----hhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEE
Q 021995 180 NTPLTEK----TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM 255 (304)
Q Consensus 180 ~~p~~~~----t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~l 255 (304)
|+|+|++ |+++++++.|++||+|++|||+|||++||++||+++|++|++.||+||||++||.+ +++|+..++ ++
T Consensus 174 h~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~-~~~Ll~~~~-i~ 251 (378)
T PRK15438 174 HTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPEL-NVELLKKVD-IG 251 (378)
T ss_pred eCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCC-chhhhhcCC-EE
Confidence 9999996 99999999999999999999999999999999999999999999999999999964 567877665 99
Q ss_pred ccCCCcCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 021995 256 TPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDF 287 (304)
Q Consensus 256 TPHia~~t~e~~~~~~~~~~~~l~~~~~g~~~ 287 (304)
|||+||+|.|.+.++...+.+|+.+|+ |.+.
T Consensus 252 TPHiAg~s~e~~~~~~~~~~~~l~~~~-~~~~ 282 (378)
T PRK15438 252 TPHIAGYTLEGKARGTTQVFEAYSKFI-GHEQ 282 (378)
T ss_pred CCccCcCcHHHHHHHHHHHHHHHHHHH-cCcc
Confidence 999999999999999999999999998 5554
No 22
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=7.8e-54 Score=406.85 Aligned_cols=236 Identities=29% Similarity=0.463 Sum_probs=214.2
Q ss_pred ccchhchhHHHhcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHH
Q 021995 20 LRSSSRFSRHYASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVI 99 (304)
Q Consensus 20 ~~~~~~~~~~l~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~ 99 (304)
+++.+++++++...++||+|++.++|+|++ |+++|.++||.|+|+||+|+.+||||+++++|++.|+
T Consensus 43 v~~~t~v~~~ll~~~~Lk~I~~~~~G~D~i----D~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~--------- 109 (381)
T PRK00257 43 VRSVTRVDRALLEGSRVRFVGTCTIGTDHL----DLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER--------- 109 (381)
T ss_pred EeCCCCCCHHHhcCCCCeEEEECCcccccc----CHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc---------
Confidence 577789999986678999999999999965 5889999999999999999999999999999999984
Q ss_pred hCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEE
Q 021995 100 SGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV 179 (304)
Q Consensus 100 ~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~ 179 (304)
.+++|.|+||||||+|+||+.+|+++++||++|++||+..... . +...+.++++++++||+|++
T Consensus 110 -----------~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~----~-~~~~~~~l~ell~~aDiV~l 173 (381)
T PRK00257 110 -----------EGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA----E-GDGDFVSLERILEECDVISL 173 (381)
T ss_pred -----------cCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc----c-cCccccCHHHHHhhCCEEEE
Confidence 1347999999999999999999999999999999999853211 1 21234589999999999999
Q ss_pred cCCCCh----hhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEE
Q 021995 180 NTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM 255 (304)
Q Consensus 180 ~~p~~~----~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~l 255 (304)
|+|+|+ .|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||+||||++||. .++||+.. |+++
T Consensus 174 h~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~ 251 (381)
T PRK00257 174 HTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIA 251 (381)
T ss_pred eCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEE
Confidence 999998 69999999999999999999999999999999999999999999999999999996 46788885 9999
Q ss_pred ccCCCcCCHHHHHHHHHHHHHHHHHHHcCCC
Q 021995 256 TPHVSGTTIDAQLRYAAGVKDMLDRYFKGED 286 (304)
Q Consensus 256 TPHia~~t~e~~~~~~~~~~~~l~~~~~g~~ 286 (304)
|||+||+|.+++.++...+.+|+.+|+.+.+
T Consensus 252 TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~ 282 (381)
T PRK00257 252 TPHIAGYSLDGKARGTAQIYQALCRFFGIPA 282 (381)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999998875
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=2.3e-48 Score=335.18 Aligned_cols=178 Identities=39% Similarity=0.675 Sum_probs=156.1
Q ss_pred HHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcC
Q 021995 81 LMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG 160 (304)
Q Consensus 81 l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g 160 (304)
+++||++.|++..+++.++++.|... ....+++|.|+||||||+|+||+.+|+++++|||+|++|||+..+.......+
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~-~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~ 79 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASR-ERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFG 79 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHH-TTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTT
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCC-cCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccccc
Confidence 58999999999999999999999211 12457899999999999999999999999999999999999775443345556
Q ss_pred ceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCC
Q 021995 161 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 240 (304)
Q Consensus 161 ~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep 240 (304)
+.. .++++++++||+|++|+|+|++|+++|+++.|++||+|++|||++||++||++||+++|++|++.||+||||++||
T Consensus 80 ~~~-~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP 158 (178)
T PF02826_consen 80 VEY-VSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEP 158 (178)
T ss_dssp EEE-SSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSS
T ss_pred cee-eehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCC
Confidence 644 5999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCCeEEccCCC
Q 021995 241 APKDHPWRYMPNQAMTPHVS 260 (304)
Q Consensus 241 ~~~~~~l~~~~nv~lTPHia 260 (304)
++.++|||++||+++|||+|
T Consensus 159 ~~~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 159 LPADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp SSTTHHHHTSTTEEEESS-T
T ss_pred CCCCChHHcCCCEEEeCccC
Confidence 99999999999999999986
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.96 E-value=1.3e-28 Score=226.26 Aligned_cols=256 Identities=24% Similarity=0.338 Sum_probs=218.5
Q ss_pred HHHhcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCccccc
Q 021995 28 RHYASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAG 107 (304)
Q Consensus 28 ~~l~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~ 107 (304)
+.+++.+.||++...+.|+| ++|+.+|.+-||.|||.|+...+.+|+-++..+|.+.|+.....+..++|.|....
T Consensus 88 eDlEkfkalRv~~rig~g~d----n~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~~~q~~ 163 (435)
T KOG0067|consen 88 EDLEKFKALRVIVRIGSGYD----NIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQALREGTCTQGL 163 (435)
T ss_pred hhHHHhhhhceeeeeccccc----hhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhhhhhcccceeech
Confidence 34677788999999988887 67799999999999999999999999999999999999998888889999886421
Q ss_pred -----ccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCC
Q 021995 108 -----VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP 182 (304)
Q Consensus 108 -----~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p 182 (304)
.......+.|.+.|++|+|+.|+.++.++++||..|+.||+.. .....+.+|...+.++.+++.++|.+++||.
T Consensus 164 ~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~-~~g~~~~lg~~rVytlqd~~~~sd~~S~hc~ 242 (435)
T KOG0067|consen 164 EQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYL-IDGIDKSLGLQRVYTLQDLLYQSDCVSLHCN 242 (435)
T ss_pred hhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchh-hhhhhhhcccceecccchhhhhccceeeecc
Confidence 1123346789999999999999999999999999999999843 3445566777777789999999999999999
Q ss_pred CChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCC-CCCCccCCCCeEEccCCCc
Q 021995 183 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-KDHPWRYMPNQAMTPHVSG 261 (304)
Q Consensus 183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~-~~~~l~~~~nv~lTPHia~ 261 (304)
+++.++++++.-.+++|++|+.++|++||.++|+++|.++|++|++.+++ |.. ..-||.+.||.+.|||.++
T Consensus 243 ~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~ 315 (435)
T KOG0067|consen 243 LNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSFKQGPLKDAPNLICTPHTAW 315 (435)
T ss_pred cCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-------CcccccccccCCCCCCCCcccch
Confidence 99999999999999999999999999999999999999999999999877 211 2357788899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHcCCCC-CCCceeec
Q 021995 262 TTIDAQLRYAAGVKDMLDRYFKGEDF-PVQNYIVK 295 (304)
Q Consensus 262 ~t~e~~~~~~~~~~~~l~~~~~g~~~-~~~n~~~~ 295 (304)
++..+..++...+...+++-+.|.-. ...|-+++
T Consensus 316 ~~e~~~~e~re~aa~eiR~ai~g~ip~~l~~cvnk 350 (435)
T KOG0067|consen 316 YSEAASVELREVAALEIRRAITGRIPDSLRNCVNK 350 (435)
T ss_pred hhHHHHHHHHHHHhhhhhhccCCCCchhHHHHHhh
Confidence 99988888888787778877777554 33343433
No 25
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.87 E-value=2.3e-21 Score=187.48 Aligned_cols=156 Identities=17% Similarity=0.185 Sum_probs=131.8
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCC
Q 021995 61 AGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFN 140 (304)
Q Consensus 61 ~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G 140 (304)
.+|+|+|+|+.+..+++|+++++++++...+ ++.+ +..+.|++|+|+|+|.||+.+|++|++||
T Consensus 214 L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~------~R~~----------~~~LaGKtVgVIG~G~IGr~vA~rL~a~G 277 (476)
T PTZ00075 214 LLFPAINVNDSVTKSKFDNIYGCRHSLIDGI------FRAT----------DVMIAGKTVVVCGYGDVGKGCAQALRGFG 277 (476)
T ss_pred CCceEEEeCCcchHHHHHHHHHHHHHHHHHH------HHhc----------CCCcCCCEEEEECCCHHHHHHHHHHHHCC
Confidence 5799999999999999999999999988432 2222 24799999999999999999999999999
Q ss_pred CeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHH
Q 021995 141 CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV 220 (304)
Q Consensus 141 ~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~ 220 (304)
++|+++++++.....+...|+... +++++++++|+|++|+. +.++|+.+.|+.||+|++|||+||+ |++.+.
T Consensus 278 a~ViV~e~dp~~a~~A~~~G~~~~-~leell~~ADIVI~atG----t~~iI~~e~~~~MKpGAiLINvGr~---d~Ei~i 349 (476)
T PTZ00075 278 ARVVVTEIDPICALQAAMEGYQVV-TLEDVVETADIFVTATG----NKDIITLEHMRRMKNNAIVGNIGHF---DNEIQV 349 (476)
T ss_pred CEEEEEeCCchhHHHHHhcCceec-cHHHHHhcCCEEEECCC----cccccCHHHHhccCCCcEEEEcCCC---chHHhH
Confidence 999999887654444455676654 79999999999999863 6789999999999999999999999 688888
Q ss_pred HHHHcCCceEEEeecCCCCCCCCC
Q 021995 221 DACSSGHIAGYSGDVWNPQPAPKD 244 (304)
Q Consensus 221 ~aL~~g~i~ga~lDV~~~ep~~~~ 244 (304)
++|+++. ++|+++.+|....
T Consensus 350 ~aL~~~~----~vdv~evep~v~~ 369 (476)
T PTZ00075 350 AELEAYP----GIEIVEIKPQVDR 369 (476)
T ss_pred HHHHhcC----CceeecccCCCCe
Confidence 8888754 6899999987543
No 26
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.80 E-value=2.6e-19 Score=165.27 Aligned_cols=157 Identities=22% Similarity=0.312 Sum_probs=126.7
Q ss_pred cchhchhHHH-hcCCCcEEEEEeeecccCCCCcccHH-HHHhCCcEEE------EcCCCChhHHHHHHHHHHHHHHhCcc
Q 021995 21 RSSSRFSRHY-ASSGSKKIVGVFYKGNEYASMNPNFL-AAAAAGLTVA------EVTGSNVVSVAEDELMRILILVRNFL 92 (304)
Q Consensus 21 ~~~~~~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~-~~~~~gI~v~------n~~g~~~~~vAE~al~~~L~~~R~~~ 92 (304)
.....+++++ +++| .+++.++|++ ++|++ +|+++||+|+ |++.+|+.++||+++++++...
T Consensus 77 ~~~~~l~~~~l~~~~---~~~~~~~G~~----~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~---- 145 (287)
T TIGR02853 77 NEKVVLTPELLESTK---GHCTIYVGIS----NPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHT---- 145 (287)
T ss_pred cCCccccHHHHHhcC---CCCEEEEecC----CHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHhc----
Confidence 3444566665 6666 3677788987 55677 9999999999 9999999999999998877431
Q ss_pred hhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCcee--cCCHHhh
Q 021995 93 PGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF--EEDLDTM 170 (304)
Q Consensus 93 ~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~--~~~l~el 170 (304)
+.+++|++++|+|+|.||+.+|+.|+++|++|++++|++.....+.+.+... .++++++
T Consensus 146 -------------------~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~ 206 (287)
T TIGR02853 146 -------------------DFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEK 206 (287)
T ss_pred -------------------CCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHH
Confidence 2368999999999999999999999999999999999765444444445443 2467788
Q ss_pred cCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCc
Q 021995 171 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA 212 (304)
Q Consensus 171 l~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~ 212 (304)
++++|+|++|+|.. +++++.++.|++++++||++..+
T Consensus 207 l~~aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 207 VAEIDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred hccCCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCC
Confidence 99999999999864 67788999999999999999744
No 27
>PLN02494 adenosylhomocysteinase
Probab=99.66 E-value=2.8e-16 Score=152.05 Aligned_cols=120 Identities=18% Similarity=0.237 Sum_probs=105.8
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 193 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~ 193 (304)
.+.|++|+|+|+|.||+.+|+++++||++|+++++++.....+...|.... +++++++.+|+|+.+.. +.++++.
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTG----t~~vI~~ 325 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTG----NKDIIMV 325 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCC----CccchHH
Confidence 478999999999999999999999999999999987755555666677654 78999999999987443 6788999
Q ss_pred HHHhcCCCCCEEEEcCC-CchhchHHHHHH--HHcCCceEEEeecCCCC
Q 021995 194 DRIAKMKKGVLIVNNAR-GAIMDTQAVVDA--CSSGHIAGYSGDVWNPQ 239 (304)
Q Consensus 194 ~~l~~mk~g~ilVn~~r-g~~vd~~aL~~a--L~~g~i~ga~lDV~~~e 239 (304)
+.|+.||+|++|+|+|| +..||+.+|.++ ++.+.+. ..+|+|+.+
T Consensus 326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~ 373 (477)
T PLN02494 326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP 373 (477)
T ss_pred HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence 99999999999999999 689999999998 9999998 899999875
No 28
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.61 E-value=2.5e-15 Score=144.08 Aligned_cols=120 Identities=17% Similarity=0.226 Sum_probs=105.0
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 193 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~ 193 (304)
.+.|++|+|+|+|.||+.+|+.++++|++|+++++++.....+...|.... +++++++++|+|+.+.. +.++++.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG----~~~vI~~ 266 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATG----NKDVIRG 266 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCC----CHHHHHH
Confidence 478999999999999999999999999999999987765555666677554 78899999999988764 5678888
Q ss_pred HHHhcCCCCCEEEEcCCCch-hchHHHHHHHHcCCceEEEeecCCC
Q 021995 194 DRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIAGYSGDVWNP 238 (304)
Q Consensus 194 ~~l~~mk~g~ilVn~~rg~~-vd~~aL~~aL~~g~i~ga~lDV~~~ 238 (304)
+.+..||+|++++|+||+++ ||.++|.+++.+....+..+|+|.-
T Consensus 267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 99999999999999999998 9999999998887777789998873
No 29
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.57 E-value=3.6e-15 Score=126.61 Aligned_cols=115 Identities=15% Similarity=0.277 Sum_probs=95.5
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc-HHHH
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD-KDRI 196 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~-~~~l 196 (304)
++|||||+|.||+.+|++|...|++|.+|||++.+.+.+.+.|+...+++.|+++++|+|++++|..++++.++. .+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 589999999999999999999999999999987666777777888889999999999999999999888877752 2278
Q ss_pred hcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEee
Q 021995 197 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 234 (304)
Q Consensus 197 ~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lD 234 (304)
+.+++|.++||++..+.-....+.+.+.+..+. .+|
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vd 117 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVD 117 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccce--eee
Confidence 889999999999999999999999999987766 556
No 30
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.57 E-value=4.2e-14 Score=131.27 Aligned_cols=152 Identities=21% Similarity=0.227 Sum_probs=117.3
Q ss_pred hhHH-HhcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCC------ChhHHHHHHHHHHHHHHhCcchhhHHH
Q 021995 26 FSRH-YASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGS------NVVSVAEDELMRILILVRNFLPGHHQV 98 (304)
Q Consensus 26 ~~~~-l~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~------~~~~vAE~al~~~L~~~R~~~~~~~~~ 98 (304)
++++ +..+|++..+. .+.+.++ .+ +.|.++||++.+.... |+.++||.++.+.+.. .
T Consensus 83 ~~~~~l~~l~~~~~v~-~G~~~~~----~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~---~------- 146 (296)
T PRK08306 83 LTEELLELTPEHCTIF-SGIANPY----LK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIEH---T------- 146 (296)
T ss_pred chHHHHHhcCCCCEEE-EecCCHH----HH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHHh---C-------
Confidence 3444 57788886443 2344443 33 5789999999988764 8889999977754421 1
Q ss_pred HhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec--CCHHhhcCcCCE
Q 021995 99 ISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--EDLDTMLPKCDI 176 (304)
Q Consensus 99 ~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~--~~l~ell~~aDv 176 (304)
+.++.|++++|+|+|.+|+.+++.|+.+|++|++++|++...+.+...|.... +++.+.++++|+
T Consensus 147 -------------~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDi 213 (296)
T PRK08306 147 -------------PITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDI 213 (296)
T ss_pred -------------CCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCE
Confidence 23578999999999999999999999999999999998755555666776543 467788999999
Q ss_pred EEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCC
Q 021995 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARG 211 (304)
Q Consensus 177 Vi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg 211 (304)
|+.++|. .+++++.++.|++++++||++..
T Consensus 214 VI~t~p~-----~~i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 214 IFNTIPA-----LVLTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred EEECCCh-----hhhhHHHHHcCCCCcEEEEEccC
Confidence 9999983 46788999999999999999853
No 31
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.56 E-value=9.2e-15 Score=135.33 Aligned_cols=94 Identities=18% Similarity=0.290 Sum_probs=82.0
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 192 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~ 192 (304)
..|+|++|||||+|+||+.+|++|+++|++|+++++...+.+.+...|.... ++++++++||+|++|+|+ ++++++++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak~ADVV~llLPd-~~t~~V~~ 89 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVRTAQVVQMLLPD-EQQAHVYK 89 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence 3689999999999999999999999999999999875544455566677654 899999999999999997 67789999
Q ss_pred HHHHhcCCCCCEEEEc
Q 021995 193 KDRIAKMKKGVLIVNN 208 (304)
Q Consensus 193 ~~~l~~mk~g~ilVn~ 208 (304)
++.++.||+|++|+-.
T Consensus 90 ~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 90 AEVEENLREGQMLLFS 105 (335)
T ss_pred HHHHhcCCCCCEEEEC
Confidence 9999999999988754
No 32
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.55 E-value=2.2e-14 Score=131.45 Aligned_cols=115 Identities=14% Similarity=0.204 Sum_probs=105.3
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCC-hhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc--HH
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KD 194 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~-~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~--~~ 194 (304)
.+||+||+|.||..+|++|...|++|.+|||++.+ .+.....|.....+..|+.+++|+|++|+|..++.+.++- ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 48999999999999999999999999999999876 6666677998888999999999999999999999888874 57
Q ss_pred HHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEee
Q 021995 195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 234 (304)
Q Consensus 195 ~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lD 234 (304)
.++.+|+|.++||++..+......+.+.+++..+. .+|
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lD 118 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLD 118 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEe
Confidence 89999999999999999999999999999999987 556
No 33
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.46 E-value=2.6e-13 Score=111.25 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=48.8
Q ss_pred ccccchhc-hhHHH-hcCCCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCChhHHHHHH
Q 021995 18 GFLRSSSR-FSRHY-ASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDE 80 (304)
Q Consensus 18 ~~~~~~~~-~~~~l-~~~~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~~~~vAE~a 80 (304)
+++....+ +++++ +.+|+||+|++.++|+|+ +|+++|+++||.|+|+||+++.+||||+
T Consensus 41 ~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~----id~~~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 41 AIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDN----IDLEAAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp EEEESTTSTBSHHHHHHHTT-SEEEESSSSCTT----B-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred EEEEcCCCCcCHHHHhccceeEEEEEcccccCc----ccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence 45445544 88886 778999999999999985 5699999999999999999999999999
No 34
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.43 E-value=5.5e-13 Score=123.26 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=95.9
Q ss_pred EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccc-c-HHHH
Q 021995 119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF-D-KDRI 196 (304)
Q Consensus 119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i-~-~~~l 196 (304)
+|||||+|.||+.+|+.|...|++|++|||++.+.+.+.+.|.....+.++++++||+|++|+|.++.++.++ . ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 4899999999999999999999999999998766666666777666788899999999999999887777664 2 3467
Q ss_pred hcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995 197 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 229 (304)
Q Consensus 197 ~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ 229 (304)
+.++++.++||+++..+.+..++.+.+++..+.
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~ 113 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID 113 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 788999999999999999999999999987665
No 35
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.42 E-value=6.7e-13 Score=122.88 Aligned_cols=112 Identities=19% Similarity=0.272 Sum_probs=96.8
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc--HHH
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR 195 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~--~~~ 195 (304)
++|||||+|.||+.+|+.+...|++|.+||+++...+...+.|.....++++++++||+|++|+|.+..++.++. .+.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 589999999999999999999999999999987655555666777677899999999999999998887777653 346
Q ss_pred HhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995 196 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 229 (304)
Q Consensus 196 l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ 229 (304)
++.+++|.++||+++..+...+++.+.+.+..+.
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~ 116 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIE 116 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 7889999999999999998999999999887665
No 36
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.42 E-value=9.6e-13 Score=127.05 Aligned_cols=141 Identities=18% Similarity=0.193 Sum_probs=106.1
Q ss_pred hCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccC
Q 021995 60 AAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPF 139 (304)
Q Consensus 60 ~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~ 139 (304)
+.+++|.|++..+..+.-|...+.- ++.|..-. ......+.|++|+|+|+|.||+.+|+.|+++
T Consensus 171 ~l~~Pv~~vn~s~~K~~~dn~~gt~---------------~s~~~ai~-rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~ 234 (425)
T PRK05476 171 ALKFPAINVNDSVTKSKFDNRYGTG---------------ESLLDGIK-RATNVLIAGKVVVVAGYGDVGKGCAQRLRGL 234 (425)
T ss_pred CCCCCEEecCCcccCccccccHHHH---------------hhhHHHHH-HhccCCCCCCEEEEECCCHHHHHHHHHHHhC
Confidence 4679999999988776444222221 12221000 0012357999999999999999999999999
Q ss_pred CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCch-hchHH
Q 021995 140 NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQA 218 (304)
Q Consensus 140 G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~-vd~~a 218 (304)
|++|+++|+++.....+...|... .+++++++.+|+|+.++. +.++++.+.+..||+|++++|+|+... +|.++
T Consensus 235 Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG----~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~ 309 (425)
T PRK05476 235 GARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATG----NKDVITAEHMEAMKDGAILANIGHFDNEIDVAA 309 (425)
T ss_pred CCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCC----CHHHHHHHHHhcCCCCCEEEEcCCCCCccChHH
Confidence 999999999876555555667664 478999999999988764 456888999999999999999999876 67777
Q ss_pred HHH
Q 021995 219 VVD 221 (304)
Q Consensus 219 L~~ 221 (304)
|.+
T Consensus 310 L~~ 312 (425)
T PRK05476 310 LEE 312 (425)
T ss_pred Hhh
Confidence 654
No 37
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.41 E-value=9.8e-13 Score=122.25 Aligned_cols=113 Identities=19% Similarity=0.266 Sum_probs=98.4
Q ss_pred EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCc---CCEEEEcCCCChhhhccccHHH
Q 021995 119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGMFDKDR 195 (304)
Q Consensus 119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~---aDvVi~~~p~~~~t~~~i~~~~ 195 (304)
+|||||+|.||+.+|+.|...|++|++|||++...+.+.+.|.....++++++++ +|+|++|+|..+.++.++ .+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~i 80 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KDL 80 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HHH
Confidence 7999999999999999999999999999998765566666787777889998876 699999999887877777 467
Q ss_pred HhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEee
Q 021995 196 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 234 (304)
Q Consensus 196 l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lD 234 (304)
++.+++|.++||+++....+..++.+.+.+..+. .+|
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd 117 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD 117 (299)
T ss_pred hccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence 7889999999999999999999999999887765 466
No 38
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.41 E-value=1.1e-12 Score=121.88 Aligned_cols=115 Identities=12% Similarity=0.158 Sum_probs=99.4
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc--HHH
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR 195 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~--~~~ 195 (304)
++|||||+|.||..+|+.|...|++|++||+++.+.+.+.+.|.....++.+++++||+|++|+|....++.++. ...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 479999999999999999999999999999987666666666777777889999999999999998876666653 346
Q ss_pred HhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEee
Q 021995 196 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 234 (304)
Q Consensus 196 l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lD 234 (304)
+..+++|.++||++++.+...+.+.+.+.+..+. .+|
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~ld 118 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMD 118 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence 7788999999999999999999999999998877 456
No 39
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.38 E-value=1.3e-12 Score=109.95 Aligned_cols=102 Identities=22% Similarity=0.369 Sum_probs=75.9
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 192 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~ 192 (304)
..+.||++.|+|||.+|+.+|+.|+++|++|++++.+|...-++...|.+.. +++++++++|+++.++. ...++.
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG----~~~vi~ 93 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATG----NKDVIT 93 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCC----CccccC
Confidence 3689999999999999999999999999999999998866666777788765 89999999999988875 346888
Q ss_pred HHHHhcCCCCCEEEEcCCCch-hchHHH
Q 021995 193 KDRIAKMKKGVLIVNNARGAI-MDTQAV 219 (304)
Q Consensus 193 ~~~l~~mk~g~ilVn~~rg~~-vd~~aL 219 (304)
.+.|.+||+|+++.|++.-+. +|-+.|
T Consensus 94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L 121 (162)
T PF00670_consen 94 GEHFRQMKDGAILANAGHFDVEIDVDAL 121 (162)
T ss_dssp HHHHHHS-TTEEEEESSSSTTSBTHHHH
T ss_pred HHHHHHhcCCeEEeccCcCceeEeeccc
Confidence 999999999999999986553 344443
No 40
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.36 E-value=5.6e-12 Score=124.07 Aligned_cols=121 Identities=12% Similarity=0.079 Sum_probs=101.5
Q ss_pred EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc----Cce---ecCCHHhhcCc---CCEEEEcCCCChhhh
Q 021995 119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----GAK---FEEDLDTMLPK---CDIVVVNTPLTEKTR 188 (304)
Q Consensus 119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~----g~~---~~~~l~ell~~---aDvVi~~~p~~~~t~ 188 (304)
+||+||+|.||+.+|++|...|++|.+|||++.+.+.+.+. |.. ...+++++.+. +|+|++++|..+.++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~ 87 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD 87 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence 69999999999999999999999999999987655544332 433 45688888875 999999999999988
Q ss_pred ccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCC
Q 021995 189 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 240 (304)
Q Consensus 189 ~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep 240 (304)
.++ ...++.+++|.++||++....-+...+.+.+++..+.....-|.-.++
T Consensus 88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~ 138 (493)
T PLN02350 88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE 138 (493)
T ss_pred HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence 888 578899999999999999999999999999999988855444554443
No 41
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.35 E-value=3.9e-12 Score=118.28 Aligned_cols=114 Identities=19% Similarity=0.238 Sum_probs=98.7
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCc---CCEEEEcCCCChhhhccccHH
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGMFDKD 194 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~---aDvVi~~~p~~~~t~~~i~~~ 194 (304)
++|||||+|.||+.+|+.|...|++|.+||+++...+.+.+.|+....+++++++. +|+|++++|..+.+..++ ..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~ 79 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE 79 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence 37999999999999999999999999999998766666666788777789888876 699999999876777776 46
Q ss_pred HHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEee
Q 021995 195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 234 (304)
Q Consensus 195 ~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lD 234 (304)
.++.+++|.++||++++.......+.+.+++..+. .+|
T Consensus 80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~d 117 (301)
T PRK09599 80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVD 117 (301)
T ss_pred HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEe
Confidence 77889999999999999999999999999998877 456
No 42
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.27 E-value=2.8e-11 Score=112.22 Aligned_cols=113 Identities=17% Similarity=0.112 Sum_probs=95.9
Q ss_pred EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc--HHHH
Q 021995 119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDRI 196 (304)
Q Consensus 119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~--~~~l 196 (304)
+|||||+|.||..+++.|...|++|.+||+++. .+...+.|.....+..++.++||+|++|+|..+..+.++. ...+
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~ 80 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT 80 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence 799999999999999999999999999998764 4445566777777899999999999999998877776652 2367
Q ss_pred hcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEee
Q 021995 197 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 234 (304)
Q Consensus 197 ~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lD 234 (304)
+.+++|.++||++..+.-....+.+.+.+..+. .+|
T Consensus 81 ~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vd 116 (292)
T PRK15059 81 KASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLD 116 (292)
T ss_pred ccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEE
Confidence 778999999999999999999999999887765 566
No 43
>PLN02256 arogenate dehydrogenase
Probab=99.25 E-value=1.9e-10 Score=107.11 Aligned_cols=109 Identities=18% Similarity=0.297 Sum_probs=85.5
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhc-CcCCEEEEcCCCChhhhccccH
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML-PKCDIVVVNTPLTEKTRGMFDK 193 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell-~~aDvVi~~~p~~~~t~~~i~~ 193 (304)
-.+++|+|||+|.||+.+++.|+.+|++|++|+++. ..+.+...|+....++++++ .++|+|++|+|.. .+..++.+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~-~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~ 111 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD-YSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRS 111 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc-HHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHh
Confidence 367899999999999999999999999999999875 33455567776667888876 4799999999954 45555533
Q ss_pred HHHhcCCCCCEEEEcCCCchhchHHHHHHHHc
Q 021995 194 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 225 (304)
Q Consensus 194 ~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~ 225 (304)
-....++++++++|++..+-+..+++.+.+..
T Consensus 112 l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~ 143 (304)
T PLN02256 112 LPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE 143 (304)
T ss_pred hhhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence 22566899999999999776666677776654
No 44
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.24 E-value=3.5e-11 Score=115.96 Aligned_cols=104 Identities=17% Similarity=0.291 Sum_probs=89.2
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 192 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~ 192 (304)
..+.|++|+|+|+|.||+.+++.++++|++|+++|+++...+.+...|+... ++++.+..+|+|+.+.. +.++++
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG----~~~~i~ 272 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTG----NKDIIT 272 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCC----CHHHHH
Confidence 3478999999999999999999999999999999998877788888888654 67888999999998764 346777
Q ss_pred HHHHhcCCCCCEEEEcCCCch-hchHHHHH
Q 021995 193 KDRIAKMKKGVLIVNNARGAI-MDTQAVVD 221 (304)
Q Consensus 193 ~~~l~~mk~g~ilVn~~rg~~-vd~~aL~~ 221 (304)
...+..||+|++++|+|++++ +|..+|..
T Consensus 273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 888999999999999999876 67777654
No 45
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.24 E-value=2.4e-11 Score=110.46 Aligned_cols=118 Identities=16% Similarity=0.210 Sum_probs=104.2
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccc--c
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF--D 192 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i--~ 192 (304)
.+.++||+||+|.||..++..|...|++|++|||+..+.+.+.+.|.+..+++.|+.+.||+|+.++|...+.+.++ .
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~ 112 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK 112 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence 46789999999999999999999999999999999888888888999988999999999999999999988877776 3
Q ss_pred HHHHhcCCCCCEE-EEcCCCchhchHHHHHHHHcCCceEEEee
Q 021995 193 KDRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGHIAGYSGD 234 (304)
Q Consensus 193 ~~~l~~mk~g~il-Vn~~rg~~vd~~aL~~aL~~g~i~ga~lD 234 (304)
...|+.+++|... |+.+.-+..-...|.+++...... .+|
T Consensus 113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vD 153 (327)
T KOG0409|consen 113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVD 153 (327)
T ss_pred CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEe
Confidence 3577778888777 999999998899999999988766 455
No 46
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.22 E-value=6e-11 Score=116.49 Aligned_cols=119 Identities=14% Similarity=0.181 Sum_probs=98.8
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc----C--ceecCCHHhhcC---cCCEEEEcCCCChhhh
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----G--AKFEEDLDTMLP---KCDIVVVNTPLTEKTR 188 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~----g--~~~~~~l~ell~---~aDvVi~~~p~~~~t~ 188 (304)
.+|||||+|.||..+|+.|...|++|.+|||++...+...+. | +....+++++++ ++|+|++++|..+.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 379999999999999999999999999999987654444332 4 335678988886 5899999999988888
Q ss_pred ccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCC
Q 021995 189 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 237 (304)
Q Consensus 189 ~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~ 237 (304)
.++ .++++.+++|.++||++.+...|...+.+.+.+..+.....-|.-
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSG 129 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSG 129 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCC
Confidence 888 578888999999999999999999999999999988843333333
No 47
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.22 E-value=6e-11 Score=110.27 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=94.1
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhh---cCcCCEEEEcCCCChhhhccccHH
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM---LPKCDIVVVNTPLTEKTRGMFDKD 194 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~el---l~~aDvVi~~~p~~~~t~~~i~~~ 194 (304)
++|||||+|.||..+|+.|...|++|.+|||++.+.+...+.+.....+++++ +.++|+|++++|.. .++.++ ++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence 37999999999999999999999999999998766666666666555566554 46789999999977 677776 56
Q ss_pred HHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeec
Q 021995 195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 235 (304)
Q Consensus 195 ~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV 235 (304)
..+.+++|.++||++.+...+...+.+.+.+..+. .+|.
T Consensus 79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~--~vda 117 (298)
T TIGR00872 79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH--LLDC 117 (298)
T ss_pred HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe--EEec
Confidence 77889999999999999999999999999887776 4553
No 48
>PLN02712 arogenate dehydrogenase
Probab=99.21 E-value=5e-11 Score=121.67 Aligned_cols=114 Identities=14% Similarity=0.223 Sum_probs=90.2
Q ss_pred cccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcC-cCCEEEEcCCCChhhhc
Q 021995 111 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRG 189 (304)
Q Consensus 111 ~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~-~aDvVi~~~p~~~~t~~ 189 (304)
.++++.+++|||||+|.||+.+|+.|+.+|++|++||++.. .+.+.+.|+....++++++. .+|+|++|+|. ..+..
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~-~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~ 440 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDY-SDEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEK 440 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChH-HHHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHH
Confidence 35677889999999999999999999999999999999753 24455677776778888775 59999999994 56677
Q ss_pred cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcC
Q 021995 190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 226 (304)
Q Consensus 190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g 226 (304)
++.+-....||+|++++|++.++-...+.+.+.+..+
T Consensus 441 vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~ 477 (667)
T PLN02712 441 VLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQD 477 (667)
T ss_pred HHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCC
Confidence 7755444478999999999999865566666655543
No 49
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.20 E-value=4.5e-11 Score=112.02 Aligned_cols=96 Identities=16% Similarity=0.240 Sum_probs=78.8
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC-CChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccc
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 191 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~-~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i 191 (304)
..|.|++|||||+|+||+++|+.|+.+|++|+++++.. ...+.+...|+... +.++++++||+|++++|.+.. ..++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~-~~V~ 90 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQ-AEVY 90 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence 46899999999999999999999999999998887654 33445556677655 899999999999999997655 6666
Q ss_pred cHHHHhcCCCCCEEEEcCCC
Q 021995 192 DKDRIAKMKKGVLIVNNARG 211 (304)
Q Consensus 192 ~~~~l~~mk~g~ilVn~~rg 211 (304)
+++.++.|++|++| -.+.|
T Consensus 91 ~~~I~~~Lk~g~iL-~~a~G 109 (330)
T PRK05479 91 EEEIEPNLKEGAAL-AFAHG 109 (330)
T ss_pred HHHHHhcCCCCCEE-EECCC
Confidence 67888999999988 45555
No 50
>PLN02858 fructose-bisphosphate aldolase
Probab=99.20 E-value=6.7e-11 Score=128.84 Aligned_cols=120 Identities=14% Similarity=0.086 Sum_probs=104.7
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccc--cH
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF--DK 193 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i--~~ 193 (304)
++++||+||+|.||..+|++|...|++|.+|||++.+.+.+.+.|+...+++.++.++||+|++|+|..+..+.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 4568999999999999999999999999999998877777777888888899999999999999999998888876 35
Q ss_pred HHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeec
Q 021995 194 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 235 (304)
Q Consensus 194 ~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV 235 (304)
..++.+++|.++||++...+-....+.+.+.+..-....+|.
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa 124 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA 124 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 678889999999999999999999999999887722235663
No 51
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.17 E-value=8.4e-11 Score=108.66 Aligned_cols=111 Identities=14% Similarity=0.155 Sum_probs=94.0
Q ss_pred EEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc--HHHHhcC
Q 021995 122 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDRIAKM 199 (304)
Q Consensus 122 IIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~--~~~l~~m 199 (304)
|||+|.||..+|+.|...|++|.+|||++...+...+.|.....++.++++++|+|++|+|..+.++.++. .+.++.+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999987666666667777777899999999999999998777666652 4667788
Q ss_pred CCCCEEEEcCCCchhchHHHHHHHHcCCceEEEee
Q 021995 200 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 234 (304)
Q Consensus 200 k~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lD 234 (304)
++|.++||++..++-....+.+.+.+..+. .+|
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd 113 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD 113 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence 999999999988888888888888876665 466
No 52
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.16 E-value=2.8e-10 Score=111.75 Aligned_cols=111 Identities=10% Similarity=0.119 Sum_probs=93.0
Q ss_pred EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc-----CceecCCHHhhc---CcCCEEEEcCCCChhhhcc
Q 021995 119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-----GAKFEEDLDTML---PKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~-----g~~~~~~l~ell---~~aDvVi~~~p~~~~t~~~ 190 (304)
.|||||+|.||..+|+.|...|++|.+|||++.+.+...+. ++....+++++. +++|+|++++|..+.+..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 38999999999999999999999999999987655554443 244556777765 4699999999988888887
Q ss_pred ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceE
Q 021995 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG 230 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~g 230 (304)
+ .++++.+++|.++||++....-|...+.+.+.+..+..
T Consensus 81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~f 119 (467)
T TIGR00873 81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILF 119 (467)
T ss_pred H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEE
Confidence 7 56778899999999999999999999999999888873
No 53
>PLN02858 fructose-bisphosphate aldolase
Probab=99.13 E-value=1.7e-10 Score=125.65 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=100.5
Q ss_pred CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccc--cHH
Q 021995 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF--DKD 194 (304)
Q Consensus 117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i--~~~ 194 (304)
.++|||||+|.||..+|+.|...|++|.+||+++...+.....|.....++.+++++||+|++|+|..++++.++ +..
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 478999999999999999999999999999998765555666677667789999999999999999888888886 446
Q ss_pred HHhcCCCCCEEEEcCCCchhchHHHHHHHHc--CCceEEEee
Q 021995 195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSS--GHIAGYSGD 234 (304)
Q Consensus 195 ~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~--g~i~ga~lD 234 (304)
.++.+++|.++||++..++-....+.+.+.+ ..+. .+|
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lD 443 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVD 443 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEE
Confidence 7888999999999999999999999999988 5554 555
No 54
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.10 E-value=1.4e-09 Score=106.30 Aligned_cols=134 Identities=19% Similarity=0.290 Sum_probs=98.3
Q ss_pred CEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCCh-hHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHH
Q 021995 118 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR 195 (304)
Q Consensus 118 ~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~-~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~ 195 (304)
++|+||| +|.||+.+|+.|+..|++|.+|++++... +.+.+.|+....++++.+.++|+|++|+|.. .+..++ ++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHH
Confidence 4799998 89999999999999999999999876442 4455667766668888999999999999964 344444 566
Q ss_pred HhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCC-CCCCccCCCCeEEccCC
Q 021995 196 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-KDHPWRYMPNQAMTPHV 259 (304)
Q Consensus 196 l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~-~~~~l~~~~nv~lTPHi 259 (304)
.+.+++++++++++.......+++.+.+..+ .. .+.. .|.. +..+++....++++|+-
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~-~~--~V~~---HPmaGp~~~~~~g~~~il~p~~ 137 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEG-VE--ILPT---HPMFGPRTPSLKGQVVILTPTE 137 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCC-CE--EEEc---CCCCCCCCcccCCCEEEEecCC
Confidence 6778999999999987666666666665432 11 2222 2331 22356677789999965
No 55
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.09 E-value=1.5e-09 Score=101.25 Aligned_cols=146 Identities=14% Similarity=0.128 Sum_probs=94.2
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChhHHHhcCc--eecCCHHhhcCcCCEEEEcCCCChhhhccc
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGA--KFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 191 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~~~~~~g~--~~~~~l~ell~~aDvVi~~~p~~~~t~~~i 191 (304)
..++|+|||+|.||..+++.|+..|. +|++||+++...+.+.+.|. ....++++.++++|+|++|+|... +..++
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~-~~~v~ 83 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGA-SGAVA 83 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHH-HHHHH
Confidence 34689999999999999999998884 89999997655555555554 234577888999999999999642 22332
Q ss_pred cHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCC---CC---CCCCCCCccCCCCeEEccCCCcCCHH
Q 021995 192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN---PQ---PAPKDHPWRYMPNQAMTPHVSGTTID 265 (304)
Q Consensus 192 ~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~---~e---p~~~~~~l~~~~nv~lTPHia~~t~e 265 (304)
++....++++.++++++..+.--.+++.+.+.. .+. ++...+ .| |.....+++...++++||+-++ +.+
T Consensus 84 -~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~--~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~-~~~ 158 (307)
T PRK07502 84 -AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVH--FIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT-DPA 158 (307)
T ss_pred -HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCe--EEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC-CHH
Confidence 455677899999999977553333333333322 222 222211 11 1112235666677899996544 344
Q ss_pred HH
Q 021995 266 AQ 267 (304)
Q Consensus 266 ~~ 267 (304)
..
T Consensus 159 ~~ 160 (307)
T PRK07502 159 AV 160 (307)
T ss_pred HH
Confidence 33
No 56
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=99.03 E-value=3.1e-10 Score=109.25 Aligned_cols=107 Identities=22% Similarity=0.274 Sum_probs=82.3
Q ss_pred CcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCC------CCChhHHHhcCceecCCHHhhcCcCC
Q 021995 102 EWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV------KMDPQLEKETGAKFEEDLDTMLPKCD 175 (304)
Q Consensus 102 ~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~------~~~~~~~~~~g~~~~~~l~ell~~aD 175 (304)
-|.+..++.....|+||+|+|||+|++|+..|..|+..|++|++--|. ..+.+.+.+.|... .+++|++++||
T Consensus 21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~AD 99 (487)
T PRK05225 21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQAD 99 (487)
T ss_pred ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCC
Confidence 376665544446799999999999999999999999999998844332 23334444556654 58999999999
Q ss_pred EEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCc
Q 021995 176 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA 212 (304)
Q Consensus 176 vVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~ 212 (304)
+|++.+|++. .+.+.++.++.||+|+.|. .|.|-
T Consensus 100 vVviLlPDt~--q~~v~~~i~p~LK~Ga~L~-fsHGF 133 (487)
T PRK05225 100 LVINLTPDKQ--HSDVVRAVQPLMKQGAALG-YSHGF 133 (487)
T ss_pred EEEEcCChHH--HHHHHHHHHhhCCCCCEEE-ecCCc
Confidence 9999999883 6777799999999999875 34443
No 57
>PLN02712 arogenate dehydrogenase
Probab=99.01 E-value=3.5e-09 Score=108.30 Aligned_cols=110 Identities=16% Similarity=0.276 Sum_probs=82.9
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhc-CcCCEEEEcCCCChhhhcccc
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML-PKCDIVVVNTPLTEKTRGMFD 192 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell-~~aDvVi~~~p~~~~t~~~i~ 192 (304)
.-..++|||||+|.||+.+|+.|+.+|++|++||++. ....+.+.|+....++++++ .++|+|++|+|. ..+..++.
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~-~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~ 126 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSD-HSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLK 126 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHH
Confidence 3455789999999999999999999999999999874 34456677877777888865 569999999995 45666665
Q ss_pred HHHHhcCCCCCEEEEcCCCchhchHHHHHHHHc
Q 021995 193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 225 (304)
Q Consensus 193 ~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~ 225 (304)
.-.+..++++++|+|++.-+..-.+++.+.+..
T Consensus 127 ~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~ 159 (667)
T PLN02712 127 SLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE 159 (667)
T ss_pred hhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC
Confidence 433467899999999986553333444444433
No 58
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.01 E-value=2.2e-09 Score=98.81 Aligned_cols=94 Identities=18% Similarity=0.210 Sum_probs=70.8
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCce-ecCCHHhhcCcCCEEEEcCCCChhhhccccHHHH
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI 196 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l 196 (304)
++|+|||+|.||..+|+.|+..|++|.+||+++...+.+.+.|.. ...+..+.++++|+|++|+|.... ..++ ++..
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~-~~~~-~~l~ 78 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLL-LPPS-EQLI 78 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHH-HHHH-HHHH
Confidence 379999999999999999999999999999976555555555542 222223568899999999995432 2333 5666
Q ss_pred hcCCCCCEEEEcCCCch
Q 021995 197 AKMKKGVLIVNNARGAI 213 (304)
Q Consensus 197 ~~mk~g~ilVn~~rg~~ 213 (304)
+.++++++++|++.-+.
T Consensus 79 ~~l~~~~ii~d~~Svk~ 95 (279)
T PRK07417 79 PALPPEAIVTDVGSVKA 95 (279)
T ss_pred HhCCCCcEEEeCcchHH
Confidence 77899999999987553
No 59
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=99.01 E-value=5.1e-10 Score=93.96 Aligned_cols=95 Identities=22% Similarity=0.327 Sum_probs=69.7
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCC-ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 193 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~-~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~ 193 (304)
|++|+|+|||+|+.|++.|..|+..|++|++-.|... +.+.+++.|.+.. +.+|+.+++|+|++.+|... ...+..+
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~PD~~-q~~vy~~ 79 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLPDEV-QPEVYEE 79 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S-HHH-HHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCChHH-HHHHHHH
Confidence 6899999999999999999999999999998887665 5667778888765 89999999999999999532 2345567
Q ss_pred HHHhcCCCCCEEEEcCCCc
Q 021995 194 DRIAKMKKGVLIVNNARGA 212 (304)
Q Consensus 194 ~~l~~mk~g~ilVn~~rg~ 212 (304)
+..+.||+|..|+- +.|-
T Consensus 80 ~I~p~l~~G~~L~f-ahGf 97 (165)
T PF07991_consen 80 EIAPNLKPGATLVF-AHGF 97 (165)
T ss_dssp HHHHHS-TT-EEEE-SSSH
T ss_pred HHHhhCCCCCEEEe-CCcc
Confidence 88889999998763 3443
No 60
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.98 E-value=3.1e-09 Score=93.97 Aligned_cols=118 Identities=21% Similarity=0.254 Sum_probs=104.1
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhh---cCcCCEEEEcCCCChhhhccccHH
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM---LPKCDIVVVNTPLTEKTRGMFDKD 194 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~el---l~~aDvVi~~~p~~~~t~~~i~~~ 194 (304)
+++|+||+|+||..++++|...|++|++||+++...+.+...|+....+++++ +...-+|.+.+|..+.|..++ .+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DD 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HH
Confidence 47899999999999999999999999999999887788888888777788776 455789999999988887776 57
Q ss_pred HHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCC
Q 021995 195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP 238 (304)
Q Consensus 195 ~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ 238 (304)
+-+.|.+|-++|+-+...--|....++.|.+..|. .+||=..
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~GTS 121 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVGTS 121 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEeccCC
Confidence 78889999999999999999999999999999998 7888554
No 61
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.98 E-value=2e-09 Score=100.66 Aligned_cols=97 Identities=21% Similarity=0.323 Sum_probs=73.9
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC-CChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 193 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~-~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~ 193 (304)
|+|++|||||+|+||+++|+.|+.+|++|+++++.. ...+.+.+.|+... +..+++++||+|++++|.... ...+.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~-~~~v~~ 78 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQ-HEVYEA 78 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence 578999999999999999999999999987655433 33344446677654 688899999999999995533 334456
Q ss_pred HHHhcCCCCCEEEEcCCCchh
Q 021995 194 DRIAKMKKGVLIVNNARGAIM 214 (304)
Q Consensus 194 ~~l~~mk~g~ilVn~~rg~~v 214 (304)
+..+.++++. +|.++-|-.+
T Consensus 79 ei~~~l~~g~-iVs~aaG~~i 98 (314)
T TIGR00465 79 EIQPLLKEGK-TLGFSHGFNI 98 (314)
T ss_pred HHHhhCCCCc-EEEEeCCccH
Confidence 6778888886 7788777544
No 62
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.97 E-value=5.7e-10 Score=85.86 Aligned_cols=90 Identities=20% Similarity=0.330 Sum_probs=66.1
Q ss_pred EEEEEeeChhhHHHHHHhccCC---CeEE-EEcCCCCChhH-HHhcCceecC-CHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995 119 TVGTVGCGRIGKLLLQRLKPFN---CNLL-YHDRVKMDPQL-EKETGAKFEE-DLDTMLPKCDIVVVNTPLTEKTRGMFD 192 (304)
Q Consensus 119 ~vgIIG~G~IG~~lA~~l~~~G---~~V~-~~dr~~~~~~~-~~~~g~~~~~-~l~ell~~aDvVi~~~p~~~~t~~~i~ 192 (304)
||||||+|+||+++++.|...| .+|. +++|++++... .+++++.... +..++++++|+|++|+|... ... +.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~-~~~-v~ 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQ-LPE-VL 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGG-HHH-HH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHH-HHH-HH
Confidence 6999999999999999999999 8998 55887654433 4556665554 78999999999999999432 222 22
Q ss_pred HHHHhcCCCCCEEEEcCCC
Q 021995 193 KDRIAKMKKGVLIVNNARG 211 (304)
Q Consensus 193 ~~~l~~mk~g~ilVn~~rg 211 (304)
++. ....++.++|++.-|
T Consensus 79 ~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH-HHHHTTSEEEEESTT
T ss_pred HHH-hhccCCCEEEEeCCC
Confidence 334 566789999998654
No 63
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.96 E-value=5.8e-09 Score=95.04 Aligned_cols=103 Identities=14% Similarity=0.245 Sum_probs=80.4
Q ss_pred CEEEEEeeChhhHHHHHHhccCCC----eEEEE-cCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYH-DRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 192 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~----~V~~~-dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~ 192 (304)
++|||||+|+||..+++.|...|+ +|++| +|++...+.+.+.|+....+..+++++||+|++|+| .+....++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl- 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL- 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence 479999999999999999998887 88888 887765556666788777788899999999999997 44455555
Q ss_pred HHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995 193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 224 (304)
Q Consensus 193 ~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~ 224 (304)
.+..+.++++.++|++..| +..+.+.+.+.
T Consensus 79 ~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~ 108 (266)
T PLN02688 79 TELRPLLSKDKLLVSVAAG--ITLADLQEWAG 108 (266)
T ss_pred HHHHhhcCCCCEEEEecCC--CcHHHHHHHcC
Confidence 3555667889999988765 35566665553
No 64
>PRK08507 prephenate dehydrogenase; Validated
Probab=98.95 E-value=8.8e-09 Score=94.53 Aligned_cols=100 Identities=16% Similarity=0.285 Sum_probs=71.9
Q ss_pred CEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChhHHHhcCce-ecCCHHhhcCcCCEEEEcCCCChhhhccccHH
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAK-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 194 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~~~~~~g~~-~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~ 194 (304)
++|+|||+|.||+.+++.|+..|+ +|++||+++...+.+.+.|.. ...+++++. ++|+|++|+|.... ..++ .+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~-~~~~-~~ 77 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAI-IEIL-PK 77 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHH-HHHH-HH
Confidence 379999999999999999987775 799999976555555566652 344677765 59999999996543 3333 45
Q ss_pred HHhcCCCCCEEEEcCCCchhchHHHHHHHHc
Q 021995 195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSS 225 (304)
Q Consensus 195 ~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~ 225 (304)
..+ +++++++++++.- ...+.+.+..
T Consensus 78 l~~-l~~~~iv~d~gs~----k~~i~~~~~~ 103 (275)
T PRK08507 78 LLD-IKENTTIIDLGST----KAKIIESVPK 103 (275)
T ss_pred Hhc-cCCCCEEEECccc----hHHHHHHHHH
Confidence 556 8899999998653 3334444443
No 65
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.95 E-value=1.1e-08 Score=94.19 Aligned_cols=137 Identities=19% Similarity=0.170 Sum_probs=94.9
Q ss_pred CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCC--CCChhHHHhcCcee--cCCH-HhhcCcCCEEEEcCCCChhhhccc
Q 021995 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV--KMDPQLEKETGAKF--EEDL-DTMLPKCDIVVVNTPLTEKTRGMF 191 (304)
Q Consensus 117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~--~~~~~~~~~~g~~~--~~~l-~ell~~aDvVi~~~p~~~~t~~~i 191 (304)
.++|+|+|+|.||+.+|+.++..|+.|.+++++ ....+.+.++|+.. ..+. .+...++|+|++++|-. .|..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~-~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE-ATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH-HHHHHH
Confidence 468999999999999999999999987555544 33334444456532 1233 67788899999999954 344444
Q ss_pred cHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCC---CCCCccCCCCeEEccCCCc
Q 021995 192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP---KDHPWRYMPNQAMTPHVSG 261 (304)
Q Consensus 192 ~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~---~~~~l~~~~nv~lTPHia~ 261 (304)
+++...+|+|++++|++.-+.--.+++.+.+.+.. . +....|.- ...+++....+++||.-..
T Consensus 82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~-----~vg~HPM~G~~~~~~lf~~~~~vltp~~~~ 147 (279)
T COG0287 82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-R-----FVGGHPMFGPEADAGLFENAVVVLTPSEGT 147 (279)
T ss_pred -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-e-----eEecCCCCCCcccccccCCCEEEEcCCCCC
Confidence 55666899999999999877666666666664432 2 12234543 2457777778999996544
No 66
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.94 E-value=9.6e-09 Score=95.19 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=76.9
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhH-----------HHhc------------C-ceecCCHHhhcCc
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKET------------G-AKFEEDLDTMLPK 173 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~-----------~~~~------------g-~~~~~~l~ell~~ 173 (304)
++|||||+|.||..+|+.+...|++|++||+++...+. ..+. + ....++. +.+++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~ 83 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELRD 83 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhCC
Confidence 58999999999999999999999999999997643321 1111 1 1233344 56899
Q ss_pred CCEEEEcCCCChhhhccccHHHHhcCCCCCEEE-EcCCCchhchHHHHHHHH
Q 021995 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACS 224 (304)
Q Consensus 174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilV-n~~rg~~vd~~aL~~aL~ 224 (304)
||+|+.|+|..++.+..+-.+..+.++++++|+ |+|.-+ ...+.+.+.
T Consensus 84 aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~ 132 (295)
T PLN02545 84 ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQ 132 (295)
T ss_pred CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcC
Confidence 999999999988888877777777899999887 676654 334555554
No 67
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.93 E-value=1.4e-08 Score=89.05 Aligned_cols=110 Identities=22% Similarity=0.258 Sum_probs=85.1
Q ss_pred ccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-hcCceecCCHHhhcC-cCCEEEEcCCCChhhhc
Q 021995 112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRG 189 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~~~l~ell~-~aDvVi~~~p~~~~t~~ 189 (304)
+.+++|++++|+|+|+||+.+|+.|..+|++|+++|+++...+... .++.... +.++++. +||+++.|.. .+
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v-~~~~l~~~~~Dv~vp~A~-----~~ 96 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV-APEEIYSVDADVFAPCAL-----GG 96 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-cchhhccccCCEEEeccc-----cc
Confidence 3468999999999999999999999999999999998764333332 3366555 3455664 7999987765 35
Q ss_pred cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995 190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 229 (304)
Q Consensus 190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ 229 (304)
+++++.++.|+ ..+++..+.+++-| ..-.+.|++..+.
T Consensus 97 ~I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~ 134 (200)
T cd01075 97 VINDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL 134 (200)
T ss_pred ccCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence 88899999997 46788888888766 5667778887776
No 68
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.89 E-value=6.9e-09 Score=96.55 Aligned_cols=111 Identities=20% Similarity=0.336 Sum_probs=92.1
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 193 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~ 193 (304)
-+.||++.|.|||..|+.+|.+|+++|++|++....|...-++.-.|.+.. .+++....+|+++.++- ++++|..
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TG----nkdVi~~ 280 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATG----NKDVIRK 280 (420)
T ss_pred eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccC----CcCccCH
Confidence 368999999999999999999999999999999988876667777787765 79999999999998876 5689999
Q ss_pred HHHhcCCCCCEEEEcCCCch-hchHHHHH-HHHcCCce
Q 021995 194 DRIAKMKKGVLIVNNARGAI-MDTQAVVD-ACSSGHIA 229 (304)
Q Consensus 194 ~~l~~mk~g~ilVn~~rg~~-vd~~aL~~-aL~~g~i~ 229 (304)
+.|..||+|+++-|+|.-.+ ||...|.+ ++....++
T Consensus 281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr 318 (420)
T COG0499 281 EHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVR 318 (420)
T ss_pred HHHHhccCCeEEecccccceeccHHHHHHhhhhHhccc
Confidence 99999999999999997666 45555543 23434444
No 69
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.88 E-value=2.7e-08 Score=94.88 Aligned_cols=136 Identities=18% Similarity=0.186 Sum_probs=90.8
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCce----ecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK----FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 193 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~----~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~ 193 (304)
++|+|||+|.||.++|+.|+..|++|.+|++++.........+.. ...++++++++||+|++|+|.. .+..++ +
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl-~ 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALL-A 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHH-H
Confidence 479999999999999999999999988888876544433333221 2356788899999999999964 445554 3
Q ss_pred HHHh-cCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCC---------CCCccCCCCeEEccCCCc
Q 021995 194 DRIA-KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPK---------DHPWRYMPNQAMTPHVSG 261 (304)
Q Consensus 194 ~~l~-~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~---------~~~l~~~~nv~lTPHia~ 261 (304)
+... .+++++++.|++.-+.-..+++.+.+. .... +++. .|.+- ...++.....++||+-..
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~-~~~~--~ig~---HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~ 150 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEALLG-DLIR--FVGG---HPMAGSHKSGVAAARADLFENAPWVLTPDDHT 150 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHhcC-CCCe--EEee---CCcCcCchhhHHHhcHHHHCCCcEEEecCCCC
Confidence 4444 478999999999876544444444322 1222 2332 24321 234566667889996643
No 70
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.88 E-value=2e-08 Score=94.15 Aligned_cols=105 Identities=12% Similarity=0.177 Sum_probs=81.8
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-----------c---------CceecCCHHhhcCcCCEE
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------T---------GAKFEEDLDTMLPKCDIV 177 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-----------~---------g~~~~~~l~ell~~aDvV 177 (304)
++|||||.|.||..+|..+...|++|.+||+++...+.... . .+....++++.+++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 58999999999999999999999999999997643222111 1 124556888999999999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995 178 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 224 (304)
Q Consensus 178 i~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~ 224 (304)
+-++|.+.+.+..+-++.-+.++++++ |.++.. .+...++.+.++
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aI-laSnTS-~l~~s~la~~~~ 132 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAI-IASSTS-GLLPTDFYARAT 132 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeE-EEECCC-ccCHHHHHHhcC
Confidence 999999998888887888888999984 444444 456677777664
No 71
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.87 E-value=1.9e-08 Score=97.99 Aligned_cols=135 Identities=11% Similarity=0.088 Sum_probs=91.5
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCce----------------ecCCHHhhcCcCCEEEEcC
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK----------------FEEDLDTMLPKCDIVVVNT 181 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~----------------~~~~l~ell~~aDvVi~~~ 181 (304)
++|||||+|.||..+|..|.. |++|++||+++.+.+... .|.. ..++..+.+++||++++|+
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~V 84 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITV 84 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEc
Confidence 689999999999999999877 799999999875554444 2221 1223335689999999999
Q ss_pred CCCh------hhhccc--cHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcC--Cce-E-EEeecCCCCCCCCC---CC
Q 021995 182 PLTE------KTRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG--HIA-G-YSGDVWNPQPAPKD---HP 246 (304)
Q Consensus 182 p~~~------~t~~~i--~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g--~i~-g-a~lDV~~~ep~~~~---~~ 246 (304)
|... +...+. .+...+.+++|.++|+.|.-++-..+.++..+... ++. + ...=+|.+||.... +.
T Consensus 85 ptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~ 164 (425)
T PRK15182 85 PTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHR 164 (425)
T ss_pred CCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCccccc
Confidence 9652 333443 34567889999999999998888888765543332 222 1 11114667887644 33
Q ss_pred ccCCCCeE
Q 021995 247 WRYMPNQA 254 (304)
Q Consensus 247 l~~~~nv~ 254 (304)
+..+|.++
T Consensus 165 ~~~~~riv 172 (425)
T PRK15182 165 LTNIKKIT 172 (425)
T ss_pred ccCCCeEE
Confidence 45556563
No 72
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.86 E-value=5e-08 Score=90.15 Aligned_cols=140 Identities=13% Similarity=0.098 Sum_probs=92.7
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-------------------------cCceecCCHHhhcC
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------------------------TGAKFEEDLDTMLP 172 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-------------------------~g~~~~~~l~ell~ 172 (304)
++|+|||.|.||..+|..+...|++|+.||+++...+...+ .++....++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 58999999999999999999889999999987643222211 12234568888899
Q ss_pred cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCC
Q 021995 173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN 252 (304)
Q Consensus 173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~n 252 (304)
.||+|+.++|...+.+..+-++..+.++++++|+..+.+- ....+.+.+... -+..++- . ..|.+..+.
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~--~~~~~~~~~~~~-~r~vg~H--f------~~p~~~~~l 152 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTL--LPSQFAEATGRP-EKFLALH--F------ANEIWKNNT 152 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccC--CHHHHHhhcCCc-ccEEEEc--C------CCCCCcCCe
Confidence 9999999999765555554456667788899885443332 344566655432 2223332 1 224456677
Q ss_pred eEEccCCCcCCHHHHHH
Q 021995 253 QAMTPHVSGTTIDAQLR 269 (304)
Q Consensus 253 v~lTPHia~~t~e~~~~ 269 (304)
+.++|+-.. +.+..+.
T Consensus 153 vevv~~~~t-~~~~~~~ 168 (287)
T PRK08293 153 AEIMGHPGT-DPEVFDT 168 (287)
T ss_pred EEEeCCCCC-CHHHHHH
Confidence 888886654 3444443
No 73
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.85 E-value=5.3e-08 Score=90.09 Aligned_cols=103 Identities=19% Similarity=0.288 Sum_probs=75.5
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-----------cC-------------ceecCCHHhhcCc
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG-------------AKFEEDLDTMLPK 173 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~l~ell~~ 173 (304)
++|+|||.|.||..+|..+...|++|++||+++...+...+ .| +....+++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 58999999999999999999999999999997643322111 12 23445665 4789
Q ss_pred CCEEEEcCCCChhhhccccHHHHhcCCCCCEEE-EcCCCchhchHHHHHHHH
Q 021995 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACS 224 (304)
Q Consensus 174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilV-n~~rg~~vd~~aL~~aL~ 224 (304)
||+|+.++|...+.+..+-++..+.++++++|+ |++.-++ .++.+.+.
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---s~la~~~~ 132 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI---TRLASATD 132 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcC
Confidence 999999999876655554466777889999998 6655443 35666653
No 74
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.84 E-value=7.5e-09 Score=95.64 Aligned_cols=115 Identities=11% Similarity=0.098 Sum_probs=82.1
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-------c-----------------CceecCCHHhhcCc
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------T-----------------GAKFEEDLDTMLPK 173 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-------~-----------------g~~~~~~l~ell~~ 173 (304)
++|+|||.|.||..+|..|...|++|++||+++...+...+ . ++....++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 58999999999999999999999999999997644333211 0 12345678889999
Q ss_pred CCEEEEcCCCChhhhccccHHHHhcCCCCCEE-EEcCCCchhchHHHHHHHHcCCceEEEeecC
Q 021995 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236 (304)
Q Consensus 174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~il-Vn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~ 236 (304)
||+|+.|+|...+.+..+-.+..+.+++++++ +|+|.-++ ..+.+.+.. .-...++..+
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~ 141 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF 141 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC
Confidence 99999999987766655545666778999877 78877554 445555432 2223344444
No 75
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.84 E-value=9.2e-09 Score=96.00 Aligned_cols=83 Identities=19% Similarity=0.263 Sum_probs=68.0
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHH
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR 195 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~ 195 (304)
.+++|+|||+|.||+.+|+.|...|++|.+|+|+.. .+++++++++|+|++++|. +..+.++ ++.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~-~~l 67 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVA-EQV 67 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHH-HHH
Confidence 467899999999999999999999999999998642 3678889999999999997 4666665 333
Q ss_pred Hh-cCCCCCEEEEcCCCch
Q 021995 196 IA-KMKKGVLIVNNARGAI 213 (304)
Q Consensus 196 l~-~mk~g~ilVn~~rg~~ 213 (304)
.. .++++.++|++++|-.
T Consensus 68 ~~~~~~~~~ivi~~s~gi~ 86 (308)
T PRK14619 68 QALNLPPETIIVTATKGLD 86 (308)
T ss_pred HHhcCCCCcEEEEeCCccc
Confidence 33 4788999999987543
No 76
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.84 E-value=6.9e-09 Score=95.29 Aligned_cols=103 Identities=16% Similarity=0.313 Sum_probs=78.8
Q ss_pred CEEEEEeeChhhHHHHHHhccCCC----eEEEEcCCCCChhHHH-hcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQLEK-ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 192 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~----~V~~~dr~~~~~~~~~-~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~ 192 (304)
++|||||+|+||.++++.|...|+ +|+++||+..+.+.+. ++|+....+..+++++||+|++|+|. .....++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl- 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI- 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH-
Confidence 489999999999999999987664 6999999775544444 36776667888899999999999994 4555554
Q ss_pred HHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995 193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 224 (304)
Q Consensus 193 ~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~ 224 (304)
++....++++.++|++.-|- +.+.|.+.+.
T Consensus 81 ~~l~~~~~~~~lvISi~AGi--~i~~l~~~l~ 110 (272)
T PRK12491 81 NQIKDQIKNDVIVVTIAAGK--SIKSTENEFD 110 (272)
T ss_pred HHHHHhhcCCcEEEEeCCCC--cHHHHHHhcC
Confidence 44555678889999999884 5556666553
No 77
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.83 E-value=2.5e-08 Score=95.52 Aligned_cols=151 Identities=15% Similarity=0.226 Sum_probs=99.4
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-hcCce---e---cCCHHhhcCcCCEEEEcCCCC-h
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAK---F---EEDLDTMLPKCDIVVVNTPLT-E 185 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~---~---~~~l~ell~~aDvVi~~~p~~-~ 185 (304)
.+.+.+|.|+|.|.+|+.+++.++.+|++|.++|+++...+... ..+.. . .+++.+.++++|+|+.+++.+ .
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 46778899999999999999999999999999998764333332 23321 1 135677889999999998542 2
Q ss_pred hhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCC--eEEccCCCcCC
Q 021995 186 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN--QAMTPHVSGTT 263 (304)
Q Consensus 186 ~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~n--v~lTPHia~~t 263 (304)
.+..+++++.++.||+++++||++-.. .|.+. ...|...+.|.....+ .+.-||+.+.-
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva~d~------------GG~~e-------~~~~t~~d~p~~~~~Gv~~~~v~nlP~~~ 304 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVAIDQ------------GGCVE-------TSRPTTHDQPTYAVHDVVHYCVANMPGAV 304 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEecCC------------CCCcc-------CCcCCCCCCCEEEECCeEEEEeCCccccc
Confidence 345678999999999999999997211 11111 1223333455554444 44567777654
Q ss_pred H-HHHHHHHHHHHHHHHHHHc
Q 021995 264 I-DAQLRYAAGVKDMLDRYFK 283 (304)
Q Consensus 264 ~-e~~~~~~~~~~~~l~~~~~ 283 (304)
. ++-..+...+...|..+.+
T Consensus 305 p~~aS~~~~~~l~~~l~~~~~ 325 (370)
T TIGR00518 305 PKTSTYALTNATMPYVLELAN 325 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 3 3444455555555555554
No 78
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.82 E-value=1.4e-08 Score=95.47 Aligned_cols=103 Identities=18% Similarity=0.178 Sum_probs=78.4
Q ss_pred CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc--------C------ceecCCHHhhcCcCCEEEEcCC
Q 021995 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------G------AKFEEDLDTMLPKCDIVVVNTP 182 (304)
Q Consensus 117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~--------g------~~~~~~l~ell~~aDvVi~~~p 182 (304)
.++|+|||.|.||..+|..|...|++|.+|+|++...+..... | +...+++++.++.+|+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 3589999999999999999999999999999975433333332 2 3345688888899999999999
Q ss_pred CChhhhccccHHHHhcCCCCCEEEEcCCC-chhc--hHHHHHHHHc
Q 021995 183 LTEKTRGMFDKDRIAKMKKGVLIVNNARG-AIMD--TQAVVDACSS 225 (304)
Q Consensus 183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~rg-~~vd--~~aL~~aL~~ 225 (304)
... + ++.++.++++.++|+++.| ..-+ ...+.+.+.+
T Consensus 84 ~~~-~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 84 SKA-L-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred hHH-H-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 652 2 6677889999999999997 3332 4456666654
No 79
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.82 E-value=3.3e-09 Score=97.43 Aligned_cols=159 Identities=14% Similarity=0.114 Sum_probs=119.4
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC-CChhHHHhcCceec-CCH------HhhcCcCCEEEEcCCCChhh
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFE-EDL------DTMLPKCDIVVVNTPLTEKT 187 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~-~~~~~~~~~g~~~~-~~l------~ell~~aDvVi~~~p~~~~t 187 (304)
.|+++||+|+|.+|+.-.+.+++||++|+++|++. ++.+..+.+|++.+ .+. +++...-|.++-+++.- .
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~--a 258 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL--A 258 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec--c
Confidence 79999999999999999999999999999999987 44445556887532 222 34566678777666632 2
Q ss_pred hccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHH
Q 021995 188 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ 267 (304)
Q Consensus 188 ~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~ 267 (304)
.+-+ +..+..||++..+|-++ .+..|+..+-+.+-+..+.+.-.+-|...|++
T Consensus 259 ~~~~-~~~~~~lk~~Gt~V~vg--------------------------~p~~~~~~~~~~lil~~~~I~GS~vG~~ket~ 311 (360)
T KOG0023|consen 259 EHAL-EPLLGLLKVNGTLVLVG--------------------------LPEKPLKLDTFPLILGRKSIKGSIVGSRKETQ 311 (360)
T ss_pred ccch-HHHHHHhhcCCEEEEEe--------------------------CcCCcccccchhhhcccEEEEeeccccHHHHH
Confidence 2333 57788899999988886 22235555545556677888888888899999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCceeecCCccCCCCC
Q 021995 268 LRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 304 (304)
Q Consensus 268 ~~~~~~~~~~l~~~~~g~~~~~~n~~~~~~~~~~~~~ 304 (304)
+.+......+|+.+++--+++.+|. .++.+.+|+.|
T Consensus 312 E~Ldf~a~~~ik~~IE~v~~~~v~~-a~erm~kgdV~ 347 (360)
T KOG0023|consen 312 EALDFVARGLIKSPIELVKLSEVNE-AYERMEKGDVR 347 (360)
T ss_pred HHHHHHHcCCCcCceEEEehhHHHH-HHHHHHhcCee
Confidence 9999999999999999888877884 44448887764
No 80
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.82 E-value=3.9e-08 Score=102.03 Aligned_cols=137 Identities=16% Similarity=0.160 Sum_probs=96.6
Q ss_pred CEEEEEeeChhhHHHHHHhccCC--CeEEEEcCCCCChhHHHhcCce--ecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 193 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~~~~~~g~~--~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~ 193 (304)
++|+|||+|.||..+++.++..| .+|++||++..+.+.+.+.|+. ...++++.++++|+|++|+|.. ....++ +
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~ 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence 68999999999999999999888 4799999987665666666653 3456788899999999999954 333333 3
Q ss_pred HHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCC---------CCCCccCCCCeEEccCCCc
Q 021995 194 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP---------KDHPWRYMPNQAMTPHVSG 261 (304)
Q Consensus 194 ~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~---------~~~~l~~~~nv~lTPHia~ 261 (304)
+..+.++++.++++++.-+....+.+.+.+....+. +..+-|.. .+..|+.-.+++++|+..+
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r-----~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~ 153 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAG-----FVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET 153 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCe-----EEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence 445567889999999986544455566555442222 33344432 2335677778899997654
No 81
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.80 E-value=2.8e-08 Score=96.55 Aligned_cols=107 Identities=18% Similarity=0.208 Sum_probs=76.3
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCcee--cCCHHhh---------------cCcCCEEEEc
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF--EEDLDTM---------------LPKCDIVVVN 180 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~--~~~l~el---------------l~~aDvVi~~ 180 (304)
++|+|||+|.||..+|..|...|++|++||+++...+... .|... ...++++ +++||+|++|
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~-~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTIN-RGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHH-CCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 6899999999999999999999999999999765444322 12110 1123332 3479999999
Q ss_pred CCCC------hhhhccc--cHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHc
Q 021995 181 TPLT------EKTRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 225 (304)
Q Consensus 181 ~p~~------~~t~~~i--~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~ 225 (304)
+|.. ++...+. -....+.+++|+++|+.|.-++-..+.+...+.+
T Consensus 83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~ 135 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE 135 (415)
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 9964 1112221 2456777899999999999777777777776665
No 82
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.79 E-value=7.4e-08 Score=92.39 Aligned_cols=121 Identities=17% Similarity=0.224 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCC
Q 021995 73 VVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKM 151 (304)
Q Consensus 73 ~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~ 151 (304)
.+...+..+-.++..+|... ++..+. ......++|+||| +|.||+.+|+.|+..|++|.+||++..
T Consensus 67 ~~~~~~~i~~~i~~~s~~~q------~~~~~~-------~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~ 133 (374)
T PRK11199 67 PPDLIEDVLRRVMRESYSSE------NDKGFK-------TLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW 133 (374)
T ss_pred CHHHHHHHHHHHHHHHHHHh------HHhccc-------ccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc
Confidence 34445666777777776431 222111 1122558999999 999999999999999999999998431
Q ss_pred ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHH
Q 021995 152 DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDA 222 (304)
Q Consensus 152 ~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~a 222 (304)
.+.++++++||+|++|+|... +..++ +++.. +++|+++++++.-+..-..++.+.
T Consensus 134 -------------~~~~~~~~~aDlVilavP~~~-~~~~~-~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~ 188 (374)
T PRK11199 134 -------------DRAEDILADAGMVIVSVPIHL-TEEVI-ARLPP-LPEDCILVDLTSVKNAPLQAMLAA 188 (374)
T ss_pred -------------hhHHHHHhcCCEEEEeCcHHH-HHHHH-HHHhC-CCCCcEEEECCCccHHHHHHHHHh
Confidence 256778899999999999764 34444 34445 899999999987654444455444
No 83
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.78 E-value=3.8e-08 Score=82.07 Aligned_cols=111 Identities=17% Similarity=0.277 Sum_probs=80.3
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCC-CeEEEEcCCCCChhH-HHhcCc----eecCCHHhhcCcCCEEEEcCCCChh-
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQL-EKETGA----KFEEDLDTMLPKCDIVVVNTPLTEK- 186 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~~-~~~~g~----~~~~~l~ell~~aDvVi~~~p~~~~- 186 (304)
.+.+++++|+|.|.||+.+++.+...| .+|.+++++....+. .++.+. ....+++++++++|+|++++|....
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP 95 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence 467889999999999999999999885 789999997644333 333332 1345777888999999999997653
Q ss_pred hhc-cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995 187 TRG-MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 229 (304)
Q Consensus 187 t~~-~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ 229 (304)
... .+.. ..++++.+++|++..+.. + .+.+.+++..+.
T Consensus 96 ~~~~~~~~---~~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g~~ 134 (155)
T cd01065 96 GDELPLPP---SLLKPGGVVYDVVYNPLE-T-PLLKEARALGAK 134 (155)
T ss_pred CCCCCCCH---HHcCCCCEEEEcCcCCCC-C-HHHHHHHHCCCc
Confidence 112 2232 236899999999876543 3 777777776554
No 84
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.78 E-value=1.1e-07 Score=88.02 Aligned_cols=89 Identities=13% Similarity=0.118 Sum_probs=73.4
Q ss_pred hHHHHHHhccCCCeEEEEcCCCCCh-----hHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCC
Q 021995 129 GKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 203 (304)
Q Consensus 129 G~~lA~~l~~~G~~V~~~dr~~~~~-----~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ 203 (304)
|+.+|++|...|++|++||+++... +.+.+.|+...++..++++++|+|++|+|..+.++.++ ...++.+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 8899999999999999999875322 34566788888889999999999999999888887877 56889999999
Q ss_pred EEEEcCCCchhchHH
Q 021995 204 LIVNNARGAIMDTQA 218 (304)
Q Consensus 204 ilVn~~rg~~vd~~a 218 (304)
++||++..+....-.
T Consensus 111 IVID~STIsP~t~~~ 125 (341)
T TIGR01724 111 VICNTCTVSPVVLYY 125 (341)
T ss_pred EEEECCCCCHHHHHH
Confidence 999998665544333
No 85
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.78 E-value=1.1e-07 Score=92.34 Aligned_cols=105 Identities=16% Similarity=0.233 Sum_probs=77.0
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-------------------cC-ceecCCHHhhcCcCCEE
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------------------TG-AKFEEDLDTMLPKCDIV 177 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-------------------~g-~~~~~~l~ell~~aDvV 177 (304)
++|+|||+|.||..+|..|...|++|++||+++...+.... .| .....++.+++++||+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 37999999999999999999999999999997643322211 23 34556788889999999
Q ss_pred EEcCCCChh---------hhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHH
Q 021995 178 VVNTPLTEK---------TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDAC 223 (304)
Q Consensus 178 i~~~p~~~~---------t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL 223 (304)
++|+|.... .... -.+..+.+++|.++|+.|.-++=..+.+.+.+
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~-~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~ 134 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESA-AETIAKHLRKGATVVLESTVPPGTTEEVVKPI 134 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHH-HHHHHHhcCCCCEEEEeCcCCCCchHHHHHHH
Confidence 999996532 1122 24556678999999999876655666675443
No 86
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.78 E-value=1.3e-07 Score=90.35 Aligned_cols=122 Identities=19% Similarity=0.272 Sum_probs=83.1
Q ss_pred cCCCEEEEEee-ChhhHHHHHHhcc-CCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995 115 LEGKTVGTVGC-GRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 192 (304)
Q Consensus 115 L~g~~vgIIG~-G~IG~~lA~~l~~-~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~ 192 (304)
+...+|+|||+ |.||+.+|+.|+. +|++|++||+... ...++++.+++||+|++|+|... +..++
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv~~-~~~~l- 68 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPIRH-TAALI- 68 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCHHH-HHHHH-
Confidence 35679999999 9999999999985 5999999998421 12367788999999999999543 33333
Q ss_pred HHHHh---cCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCC--CCCCccCCCCeEEccC
Q 021995 193 KDRIA---KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP--KDHPWRYMPNQAMTPH 258 (304)
Q Consensus 193 ~~~l~---~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~--~~~~l~~~~nv~lTPH 258 (304)
++... .+++++++.|++.-+.--.+++ + ..... +....|.. ..+.+++..++++||.
T Consensus 69 ~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~-~~~~~-----fVG~HPMaG~E~s~lf~g~~~iltp~ 130 (370)
T PRK08818 69 EEYVALAGGRAAGQLWLDVTSIKQAPVAAM---L-ASQAE-----VVGLHPMTAPPKSPTLKGRVMVVCEA 130 (370)
T ss_pred HHHhhhhcCCCCCeEEEECCCCcHHHHHHH---H-hcCCC-----EEeeCCCCCCCCCcccCCCeEEEeCC
Confidence 33333 3799999999997653222222 2 21111 22334543 2346777778999996
No 87
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.78 E-value=2.1e-08 Score=91.46 Aligned_cols=94 Identities=20% Similarity=0.307 Sum_probs=83.1
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHH
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 194 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~ 194 (304)
+.||.+.|.|+|.+|+..|+.|++||++|++....|...-++.-.|.+.. +++|++++.|+++.+.. .+.+|..+
T Consensus 212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~-tm~ea~~e~difVTtTG----c~dii~~~ 286 (434)
T KOG1370|consen 212 IAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVT-TLEEAIREVDIFVTTTG----CKDIITGE 286 (434)
T ss_pred ecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEee-eHHHhhhcCCEEEEccC----CcchhhHH
Confidence 56899999999999999999999999999999887776767777788765 89999999999988775 56789999
Q ss_pred HHhcCCCCCEEEEcCCCch
Q 021995 195 RIAKMKKGVLIVNNARGAI 213 (304)
Q Consensus 195 ~l~~mk~g~ilVn~~rg~~ 213 (304)
.|.+||+++++.|++.-.+
T Consensus 287 H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 287 HFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred HHHhCcCCcEEeccccccc
Confidence 9999999999999987653
No 88
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=98.77 E-value=7.2e-09 Score=97.11 Aligned_cols=157 Identities=16% Similarity=0.187 Sum_probs=117.6
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-C-----CHHhhcCcCCEEEEcCCCChhhhc
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-E-----DLDTMLPKCDIVVVNTPLTEKTRG 189 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-~-----~l~ell~~aDvVi~~~p~~~~t~~ 189 (304)
.|++|+|+|+|..|....|.++++|++|+++|++..+.+.++++|+..+ . ..+++-..+|+++.++| ....
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~-- 242 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATL-- 242 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhH--
Confidence 4899999999999999999999999999999999988888999987532 1 12333334999999998 4332
Q ss_pred cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCC-CCCCccCCCCeEEccCCCcCCHHHHH
Q 021995 190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-KDHPWRYMPNQAMTPHVSGTTIDAQL 268 (304)
Q Consensus 190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~-~~~~l~~~~nv~lTPHia~~t~e~~~ 268 (304)
...++.|+++..++-++-. ..+|.+ .....+-+.++.+..+..|.-.|.++
T Consensus 243 ---~~~l~~l~~~G~~v~vG~~-------------------------~~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e 294 (339)
T COG1064 243 ---EPSLKALRRGGTLVLVGLP-------------------------GGGPIPLLPAFLLILKEISIVGSLVGTRADLEE 294 (339)
T ss_pred ---HHHHHHHhcCCEEEEECCC-------------------------CCcccCCCCHHHhhhcCeEEEEEecCCHHHHHH
Confidence 5778889999999888621 012211 11223445678888888888889999
Q ss_pred HHHHHHHHHHHHHH-cCCCCCCCceeecCCccCCCCC
Q 021995 269 RYAAGVKDMLDRYF-KGEDFPVQNYIVKAGELAPQYR 304 (304)
Q Consensus 269 ~~~~~~~~~l~~~~-~g~~~~~~n~~~~~~~~~~~~~ 304 (304)
.+.......|+... +--+++.+|.. ++.++.||.+
T Consensus 295 ~l~f~~~g~Ikp~i~e~~~l~~in~A-~~~m~~g~v~ 330 (339)
T COG1064 295 ALDFAAEGKIKPEILETIPLDEINEA-YERMEKGKVR 330 (339)
T ss_pred HHHHHHhCCceeeEEeeECHHHHHHH-HHHHHcCCee
Confidence 88888888899888 57788778844 4447777753
No 89
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.75 E-value=6.3e-08 Score=94.99 Aligned_cols=109 Identities=11% Similarity=0.073 Sum_probs=92.1
Q ss_pred hhHHHHHHhccCCCeEEEEcCCCCChhHHHhc-----CceecCCHHhhcCc---CCEEEEcCCCChhhhccccHHHHhcC
Q 021995 128 IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-----GAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGMFDKDRIAKM 199 (304)
Q Consensus 128 IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~-----g~~~~~~l~ell~~---aDvVi~~~p~~~~t~~~i~~~~l~~m 199 (304)
||+.+|++|...|++|.+|||++.+.+.+.+. ++....+++++++. +|+|++++|..+.++.++ .++++.|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 79999999999999999999987665555542 46777899998874 899999999999988888 5788999
Q ss_pred CCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCC
Q 021995 200 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 237 (304)
Q Consensus 200 k~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~ 237 (304)
.+|.++||++....-|...+.+.+++..+.....-|.-
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSG 117 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSG 117 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCC
Confidence 99999999999999999999999999888843333433
No 90
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.74 E-value=4.3e-08 Score=90.03 Aligned_cols=109 Identities=19% Similarity=0.136 Sum_probs=81.4
Q ss_pred CCCEEEEEeeChhhHHHHHHhcc--CCCeEE-EEcCCCCChh-HHHhcCc-eecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKP--FNCNLL-YHDRVKMDPQ-LEKETGA-KFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~--~G~~V~-~~dr~~~~~~-~~~~~g~-~~~~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
...+|||||+|.||+.+++.+.. .++++. ++|+++...+ .+..++. ..+.+++++++++|+|++|+|.... .
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h--~- 81 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL--R- 81 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH--H-
Confidence 45799999999999999999875 488876 7788654332 3334453 4567899999999999999995432 2
Q ss_pred ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 229 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ 229 (304)
+-..+.++.|.-++..+.+.+.+.++|.++.++++..
T Consensus 82 --e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 82 --AIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred --HHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 2223445677777888899888899999988887654
No 91
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.74 E-value=7.4e-08 Score=89.09 Aligned_cols=100 Identities=15% Similarity=0.197 Sum_probs=75.6
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhH-----------HHhcC-------------ceecCCHHhhcCc
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKETG-------------AKFEEDLDTMLPK 173 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~-----------~~~~g-------------~~~~~~l~ell~~ 173 (304)
++|||||.|.||..+|..+...|++|+.||+++...+. ..+.| +....++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 48999999999999999999999999999998754333 11222 1245677 45799
Q ss_pred CCEEEEcCCCChhhhccccHHHHhcC-CCCCEEEEcCCCchhchHH
Q 021995 174 CDIVVVNTPLTEKTRGMFDKDRIAKM-KKGVLIVNNARGAIMDTQA 218 (304)
Q Consensus 174 aDvVi~~~p~~~~t~~~i~~~~l~~m-k~g~ilVn~~rg~~vd~~a 218 (304)
||+|+-++|.+.+.+..+-.+.-+.+ +++++|++.+.+-.+..-+
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la 130 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLA 130 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH
Confidence 99999999999888877755554555 8899998887665554433
No 92
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.73 E-value=3.7e-08 Score=90.62 Aligned_cols=105 Identities=14% Similarity=0.194 Sum_probs=76.8
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCC----CeEEEEcCCCC-ChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKM-DPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 189 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G----~~V~~~dr~~~-~~~~-~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~ 189 (304)
.+++|||||+|+||..+++.|...| .+|++++|+.. ..+. ...+|+....+..+++++||+|++++|... ...
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~-~~~ 80 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKD-VAE 80 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHH-HHH
Confidence 4569999999999999999998777 68999998652 2222 234577666788889999999999999543 333
Q ss_pred cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995 190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 224 (304)
Q Consensus 190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~ 224 (304)
.+ .+....++++.++|++.-|- ..+.+.+.+.
T Consensus 81 vl-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~ 112 (279)
T PRK07679 81 AL-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQ 112 (279)
T ss_pred HH-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcC
Confidence 33 45555678899999986553 4555665554
No 93
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.73 E-value=1.9e-07 Score=87.13 Aligned_cols=140 Identities=11% Similarity=0.076 Sum_probs=86.2
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH-----------HhcC-------------ceecCCHHhhcCc
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLPK 173 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~l~ell~~ 173 (304)
++|+|||.|.||..+|..|...|++|++||+++...+.. .+.| +....++.+.+++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 479999999999999999999999999999976433321 1223 2455688889999
Q ss_pred CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCe
Q 021995 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ 253 (304)
Q Consensus 174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv 253 (304)
||+|+.++|...+....+-.+.-+..+++.++ ..+.. ......+.+.+.... . ...|-+-+ | ....|=+
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii-~ssts-~~~~~~la~~~~~~~-~-~~~~hp~~-p------~~~~~lv 151 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAIL-ASSTS-ALLASAFTEHLAGRE-R-CLVAHPIN-P------PYLIPVV 151 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCcceE-EEeCC-CCCHHHHHHhcCCcc-c-EEEEecCC-C------cccCceE
Confidence 99999999976554444333332334445544 43333 345666777775433 2 23332221 2 1112336
Q ss_pred EEccCCCcCCHHHHHH
Q 021995 254 AMTPHVSGTTIDAQLR 269 (304)
Q Consensus 254 ~lTPHia~~t~e~~~~ 269 (304)
.++|+-.+. .+..++
T Consensus 152 eiv~~~~t~-~~~~~~ 166 (308)
T PRK06129 152 EVVPAPWTA-PATLAR 166 (308)
T ss_pred EEeCCCCCC-HHHHHH
Confidence 688875543 344443
No 94
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.72 E-value=1.1e-08 Score=84.28 Aligned_cols=96 Identities=27% Similarity=0.395 Sum_probs=71.5
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChh-HHHhcC-----ceecCCHHhhcCcCCEEEEcCCCChh
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQ-LEKETG-----AKFEEDLDTMLPKCDIVVVNTPLTEK 186 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~-~~~~~g-----~~~~~~l~ell~~aDvVi~~~p~~~~ 186 (304)
+++|+++.|||.|.+|+.++..|...|++ |++++|+..+.+ .+..++ ....+++.+.+.++|+|+.++|....
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 68999999999999999999999999998 999999864333 233332 22356677788999999999986533
Q ss_pred hhccccHHHHhcCCCCC-EEEEcCCCc
Q 021995 187 TRGMFDKDRIAKMKKGV-LIVNNARGA 212 (304)
Q Consensus 187 t~~~i~~~~l~~mk~g~-ilVn~~rg~ 212 (304)
.+.++.++..++.. +++|++...
T Consensus 89 ---~i~~~~~~~~~~~~~~v~Dla~Pr 112 (135)
T PF01488_consen 89 ---IITEEMLKKASKKLRLVIDLAVPR 112 (135)
T ss_dssp ---SSTHHHHTTTCHHCSEEEES-SS-
T ss_pred ---ccCHHHHHHHHhhhhceeccccCC
Confidence 77788887766543 888887543
No 95
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.72 E-value=9.3e-09 Score=83.71 Aligned_cols=92 Identities=20% Similarity=0.316 Sum_probs=57.7
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCeEEEE-cCCCCChhHHHh-cCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 193 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~-dr~~~~~~~~~~-~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~ 193 (304)
.-.+|+|||.|++|..+++.|...|++|..+ +|+..+.+.+.. .+...+.+++++++.+|++++++|++.- .. +-+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI-~~-va~ 86 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAI-AE-VAE 86 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHH-HH-HHH
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHH-HH-HHH
Confidence 4469999999999999999999999998754 676544443332 3434455788999999999999997632 22 223
Q ss_pred HHHhc--CCCCCEEEEcC
Q 021995 194 DRIAK--MKKGVLIVNNA 209 (304)
Q Consensus 194 ~~l~~--mk~g~ilVn~~ 209 (304)
++-.. .++|.+++.+|
T Consensus 87 ~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 87 QLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp HHHCC--S-TT-EEEES-
T ss_pred HHHHhccCCCCcEEEECC
Confidence 44444 68999999996
No 96
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.71 E-value=3.1e-08 Score=92.57 Aligned_cols=95 Identities=18% Similarity=0.219 Sum_probs=73.1
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc--------------CceecCCHHhhcCcCCEEEEcCCC
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTMLPKCDIVVVNTPL 183 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~--------------g~~~~~~l~ell~~aDvVi~~~p~ 183 (304)
++|+|||.|.||..+|..|...|++|.+|+|++...+..... +.....++++.++++|+|++|+|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 479999999999999999999999999999976444433332 244456788889999999999996
Q ss_pred ChhhhccccHHHHhcCCCCCEEEEcCCCchh
Q 021995 184 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIM 214 (304)
Q Consensus 184 ~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~v 214 (304)
..+..++ .+..+.++++.++|+++.|-..
T Consensus 82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 82 -QALREVL-KQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred -HHHHHHH-HHHHhhcCCCCEEEEEeecccC
Confidence 3455554 3556667889999999866443
No 97
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.70 E-value=5.5e-08 Score=89.99 Aligned_cols=135 Identities=21% Similarity=0.222 Sum_probs=93.1
Q ss_pred cccccCCCEEEEEeeC-hhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995 111 RAYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 189 (304)
Q Consensus 111 ~~~~L~g~~vgIIG~G-~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~ 189 (304)
.+.++.||+|+|||.| .||+.+|.+|...|+.|++|++.. .++.++.++||+|+++++.. +
T Consensus 153 ~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t--------------~~l~e~~~~ADIVIsavg~~----~ 214 (301)
T PRK14194 153 TCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS--------------TDAKALCRQADIVVAAVGRP----R 214 (301)
T ss_pred hCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhcCCEEEEecCCh----h
Confidence 3557899999999996 999999999999999999998743 26889999999999999854 4
Q ss_pred cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHH
Q 021995 190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR 269 (304)
Q Consensus 190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~ 269 (304)
.+.... +|+|+++||+|-..+.+ +|. ....=||-.++-. -.--.+||=-+|--.-+...
T Consensus 215 ~v~~~~---ik~GaiVIDvgin~~~~---------~g~-~kl~GDvdf~~~~--------~~a~~iTPVPGGVGp~Tva~ 273 (301)
T PRK14194 215 LIDADW---LKPGAVVIDVGINRIDD---------DGR-SRLVGDVDFDSAL--------PVVSAITPVPGGVGPMTIAF 273 (301)
T ss_pred cccHhh---ccCCcEEEEecccccCC---------CCC-cceecccchHHHH--------hhcceecCCCCchhHHHHHH
Confidence 555444 79999999999654321 121 0133355322110 11246788777766555555
Q ss_pred HHHHHHHHHHHHHcC
Q 021995 270 YAAGVKDMLDRYFKG 284 (304)
Q Consensus 270 ~~~~~~~~l~~~~~g 284 (304)
+.+.+++..+++...
T Consensus 274 L~~N~~~a~~~~~~~ 288 (301)
T PRK14194 274 LMKNTVTAARLQAHA 288 (301)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555555555555544
No 98
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.68 E-value=3.9e-07 Score=83.87 Aligned_cols=104 Identities=15% Similarity=0.197 Sum_probs=75.9
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhH-----------HHhcC-------------ceecCCHHhhcCc
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKETG-------------AKFEEDLDTMLPK 173 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~-----------~~~~g-------------~~~~~~l~ell~~ 173 (304)
++|+|||.|.||..+|..+...|++|++||+++...+. ..+.| +....++++ +++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hcc
Confidence 58999999999999999999999999999987643321 11222 223445554 789
Q ss_pred CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 224 (304)
Q Consensus 174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~ 224 (304)
||+|+.|+|.....+.-+-++..+.++++++++....| +....|.+.+.
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~ 131 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATK 131 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhC
Confidence 99999999977766655556666778999988555444 55557777774
No 99
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.67 E-value=1.6e-07 Score=92.84 Aligned_cols=184 Identities=18% Similarity=0.194 Sum_probs=117.4
Q ss_pred ceee-ccccccchhchhHHHhcC-CCcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCC----------hhHHHHH
Q 021995 12 NAFA-SSGFLRSSSRFSRHYASS-GSKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSN----------VVSVAED 79 (304)
Q Consensus 12 ~~~~-~~~~~~~~~~~~~~l~~~-~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~----------~~~vAE~ 79 (304)
...| .+.++.-..+-.++++.. +.--+|+.+..+.+ ..-++.+.++||++..---.. -.++++.
T Consensus 60 ~~~~~adiIlkV~~P~~~e~~~l~~g~tli~~l~p~~n----~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~i 135 (511)
T TIGR00561 60 TLFWQSDIILKVNAPSDAEIAELPAGKALVSFIWPAQN----PELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANI 135 (511)
T ss_pred cchhcCCEEEEeCCCCHHHHHhcCCCCEEEEEcCccCC----HHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHH
Confidence 4456 455565566666777554 45666666655443 223667899999988642111 1344454
Q ss_pred HHHHH-HHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh
Q 021995 80 ELMRI-LILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE 158 (304)
Q Consensus 80 al~~~-L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~ 158 (304)
+=... +..+..+.... .|.- . ....+.+.++.|+|+|.+|...++.++.+|++|+++|++....+.++.
T Consensus 136 AGy~Avi~Aa~~lgr~~----~g~~----t--aag~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 136 AGYRAIIEAAHEFGRFF----TGQI----T--AAGKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred HHHHHHHHHHHHhhhhc----CCce----e--cCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 33221 22222221100 1110 0 011356789999999999999999999999999999998766667776
Q ss_pred cCceec--CC-------------------------HHhhcCcCCEEEEcC--CCChhhhccccHHHHhcCCCCCEEEEcC
Q 021995 159 TGAKFE--ED-------------------------LDTMLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 159 ~g~~~~--~~-------------------------l~ell~~aDvVi~~~--p~~~~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
+|.+.. +. +.+.++++|+|+.++ |..+ ...++.++.++.||+|+++||++
T Consensus 206 lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 206 MGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred cCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEee
Confidence 765431 00 345678899998887 3322 23678899999999999999997
Q ss_pred C
Q 021995 210 R 210 (304)
Q Consensus 210 r 210 (304)
-
T Consensus 285 ~ 285 (511)
T TIGR00561 285 A 285 (511)
T ss_pred e
Confidence 4
No 100
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.67 E-value=3.3e-07 Score=84.77 Aligned_cols=104 Identities=17% Similarity=0.218 Sum_probs=74.9
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh--------------cC-------------ceecCCHHhh
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------TG-------------AKFEEDLDTM 170 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~--------------~g-------------~~~~~~l~el 170 (304)
++|+|||.|.||..+|..+...|++|++||+++...+...+ .+ +....++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 58999999999999999999999999999997643321110 01 1233345 56
Q ss_pred cCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995 171 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 224 (304)
Q Consensus 171 l~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~ 224 (304)
+++||+|+.++|...+.+..+-+++-+.++++++|+....| +....+.+.+.
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~ 134 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALE 134 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcC
Confidence 78999999999977654444445555667899999877766 45566667664
No 101
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.66 E-value=1.9e-07 Score=89.88 Aligned_cols=129 Identities=14% Similarity=0.145 Sum_probs=86.9
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh----------------cCcee--cCCHHhhcCcCCEEEE
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----------------TGAKF--EEDLDTMLPKCDIVVV 179 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~----------------~g~~~--~~~l~ell~~aDvVi~ 179 (304)
++|+|||+|.||..+|..+. .|++|++||++..+.+...+ .+... ..+..+..++||+|++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 37999999999999997776 49999999997654333322 12222 2335677899999999
Q ss_pred cCCCCh----------hhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCC---C
Q 021995 180 NTPLTE----------KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDH---P 246 (304)
Q Consensus 180 ~~p~~~----------~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~---~ 246 (304)
|+|... ..+..+ ++..+ +++|.++|+.|.-++=..+.+.+.+.+..+. |.+|.+.+.. .
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~-~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~------~~PE~l~~G~a~~d 151 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVI-KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENII------FSPEFLREGKALYD 151 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHH-HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEE------ECcccccCCccccc
Confidence 999651 111222 33444 7999999999998888888888877664433 4666554433 3
Q ss_pred ccCCCCeEE
Q 021995 247 WRYMPNQAM 255 (304)
Q Consensus 247 l~~~~nv~l 255 (304)
++..|.+++
T Consensus 152 ~~~p~rvv~ 160 (388)
T PRK15057 152 NLHPSRIVI 160 (388)
T ss_pred ccCCCEEEE
Confidence 444455543
No 102
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.65 E-value=1.1e-07 Score=94.36 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=76.8
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-------------------cC-ceecCCHHhhcCcCCEE
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------------------TG-AKFEEDLDTMLPKCDIV 177 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-------------------~g-~~~~~~l~ell~~aDvV 177 (304)
++|||||.|.||..+|..|...|++|++||+++...+...+ .+ +...+++++++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 48999999999999999999999999999997644322111 12 45667898999999999
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHc
Q 021995 178 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 225 (304)
Q Consensus 178 i~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~ 225 (304)
+.++|...+.+..+-.+.-+.++++++|. ++..++ +...+.+.+..
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI~-SsTsgi-~~s~l~~~~~~ 130 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALIG-SSTSGF-LPSDLQEGMTH 130 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEEE-EcCCCC-CHHHHHhhcCC
Confidence 99999887666654445555677777554 444333 34567666644
No 103
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.63 E-value=1.1e-07 Score=81.19 Aligned_cols=89 Identities=29% Similarity=0.414 Sum_probs=73.9
Q ss_pred ccCCCEEEEEeeChh-hHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995 114 DLEGKTVGTVGCGRI-GKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 192 (304)
Q Consensus 114 ~L~g~~vgIIG~G~I-G~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~ 192 (304)
+|.|+++.|||.|.+ |..+++.|...|++|++.+|+. +++.+.+.++|+|+.+++.. +++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~----~ii~ 102 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKP----GLVK 102 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCC----ceec
Confidence 689999999999996 8889999999999999999852 36778999999999999843 3677
Q ss_pred HHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceE
Q 021995 193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG 230 (304)
Q Consensus 193 ~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~g 230 (304)
.+. ++++.++||++...-+| ..++++.|
T Consensus 103 ~~~---~~~~~viIDla~prdvd-------~~~~~~~G 130 (168)
T cd01080 103 GDM---VKPGAVVIDVGINRVPD-------KSGGKLVG 130 (168)
T ss_pred HHH---ccCCeEEEEccCCCccc-------ccCCCeeC
Confidence 775 57899999999988777 44555554
No 104
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.63 E-value=3.9e-07 Score=90.70 Aligned_cols=115 Identities=20% Similarity=0.186 Sum_probs=84.4
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH-----------HhcC-------------ceecCCHHhhcCc
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLPK 173 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~l~ell~~ 173 (304)
++|||||.|.||..+|..+...|++|++||+++...+.. .+.| +....++++ +.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 589999999999999999998899999999987544331 2223 345567766 569
Q ss_pred CCEEEEcCCCChhhhccccHHHHhcCCCCCEE-EEcCCCchhchHHHHHHHHcCCceEEEeecCC
Q 021995 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 237 (304)
Q Consensus 174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~il-Vn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~ 237 (304)
||+|+-++|.+.+.+..+-.+.-+.++++++| .|+|.-++- ++..++.. .-+..++..|.
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~-p~r~~G~hff~ 147 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKH-PERVAGLHFFN 147 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCC-cccEEEEeecC
Confidence 99999999998888887766655667899999 599876663 56665543 22223455454
No 105
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.63 E-value=6e-07 Score=83.72 Aligned_cols=105 Identities=13% Similarity=0.203 Sum_probs=72.2
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-----cC--------------ceecCCHHhhcCcCCEEE
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TG--------------AKFEEDLDTMLPKCDIVV 178 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-----~g--------------~~~~~~l~ell~~aDvVi 178 (304)
++|+|||.|.||..+|..|...|++|++||++....+...+ .+ +....++++.+++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 58999999999999999999999999999987643332221 11 234457778899999999
Q ss_pred EcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995 179 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 224 (304)
Q Consensus 179 ~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~ 224 (304)
+++|...+....+-.+.-..++++++++....|- ....+.+.+.
T Consensus 85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~--~~~~l~~~~~ 128 (311)
T PRK06130 85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSGL--PITAIAQAVT 128 (311)
T ss_pred EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCC--CHHHHHhhcC
Confidence 9999765433322234434467777765444442 3557777664
No 106
>PRK07680 late competence protein ComER; Validated
Probab=98.60 E-value=1.1e-07 Score=87.12 Aligned_cols=102 Identities=12% Similarity=0.273 Sum_probs=75.2
Q ss_pred EEEEEeeChhhHHHHHHhccCCC----eEEEEcCCCCChhHHHh-c-CceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995 119 TVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQLEKE-T-GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 192 (304)
Q Consensus 119 ~vgIIG~G~IG~~lA~~l~~~G~----~V~~~dr~~~~~~~~~~-~-g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~ 192 (304)
+|+|||+|.||+.+++.|...|. +|.+|+|++.+.+...+ + ++....+..+++.++|+|++++|.. ....++
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~-~~~~vl- 79 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPL-DIYPLL- 79 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHH-HHHHHH-
Confidence 69999999999999999987773 79999997644333332 2 5666668888899999999999832 333443
Q ss_pred HHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995 193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 224 (304)
Q Consensus 193 ~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~ 224 (304)
++..+.++++.++|+++-| +..+.|.+.+.
T Consensus 80 ~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 80 QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 4455667888999999865 36666666554
No 107
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.59 E-value=1.2e-07 Score=86.23 Aligned_cols=102 Identities=13% Similarity=0.250 Sum_probs=74.0
Q ss_pred EEEEEeeChhhHHHHHHhccCCCe---EEEEcCCCCChhHHHh-c-CceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995 119 TVGTVGCGRIGKLLLQRLKPFNCN---LLYHDRVKMDPQLEKE-T-GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 193 (304)
Q Consensus 119 ~vgIIG~G~IG~~lA~~l~~~G~~---V~~~dr~~~~~~~~~~-~-g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~ 193 (304)
+|||||+|+||+.+++.|...|.. +.+++|+..+.+...+ . ++....+.+++++++|+|++++|. +....++.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p-~~~~~vl~- 79 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRP-QIAEEVLR- 79 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCH-HHHHHHHH-
Confidence 799999999999999999877754 5788887644433333 3 455667888889999999999993 33444432
Q ss_pred HHHhcCCCCCEEEEcCCCchhchHHHHHHHHcC
Q 021995 194 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 226 (304)
Q Consensus 194 ~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g 226 (304)
+ + .++++.++|.+.- -+..+.|.+.+..+
T Consensus 80 ~-l-~~~~~~~vis~~a--g~~~~~l~~~~~~~ 108 (258)
T PRK06476 80 A-L-RFRPGQTVISVIA--ATDRAALLEWIGHD 108 (258)
T ss_pred H-h-ccCCCCEEEEECC--CCCHHHHHHHhCCC
Confidence 2 2 2578899999873 46777777777653
No 108
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.58 E-value=3.1e-07 Score=85.09 Aligned_cols=142 Identities=15% Similarity=0.239 Sum_probs=99.3
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcC-cCCEEEEcCCCChhhhccccHH
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGMFDKD 194 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~-~aDvVi~~~p~~~~t~~~i~~~ 194 (304)
.-.+|||||+|++|+.+|+.+...|+.|+++||+. -.+.+..+|...++.+.++++ +.|+|++|+... .+..++..-
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlctsil-siekilaty 128 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSIL-SIEKILATY 128 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeEecCcch-hHHHHHHhcccccccHHHHHhcCCCEEEEEehhh-hHHHHHHhc
Confidence 34689999999999999999999999999999965 556677888888888888775 499999998632 344444333
Q ss_pred HHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcC
Q 021995 195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 262 (304)
Q Consensus 195 ~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~ 262 (304)
-++++|.|++++++..-+...-.++.+-|-+.--.-+.=-.| .|...++.+..+|=|+ --|-+|+
T Consensus 129 pfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmf--GPksvnh~wqglpfVy-dkvRig~ 193 (480)
T KOG2380|consen 129 PFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMF--GPKSVNHEWQGLPFVY-DKVRIGY 193 (480)
T ss_pred CchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCc--CCCcCCCccccCceEE-EEeeccc
Confidence 456689999999998877776666666665432211111111 2444566666677444 4455554
No 109
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.58 E-value=6.5e-07 Score=82.32 Aligned_cols=119 Identities=19% Similarity=0.192 Sum_probs=85.8
Q ss_pred ccccCCCEEEEEeeChh-hHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 112 AYDLEGKTVGTVGCGRI-GKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~I-G~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
+.++.|+++.|||.|.+ |+.++..|...|+.|+++... ..++.+.+++||+|+++++ +.++
T Consensus 153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG----~~~~ 214 (285)
T PRK14189 153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVG----KRNV 214 (285)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCC----CcCc
Confidence 45789999999999998 999999999999999987642 2378899999999999998 4467
Q ss_pred ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHHH
Q 021995 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRY 270 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~~ 270 (304)
++. ..+|+|+++||+|...+. +|++. =||-.++- ...--.+||--+|--.=+...+
T Consensus 215 i~~---~~ik~gavVIDVGin~~~----------~gkl~---GDVd~~~v--------~~~a~~iTPVPGGVGp~T~a~L 270 (285)
T PRK14189 215 LTA---DMVKPGATVIDVGMNRDD----------AGKLC---GDVDFAGV--------KEVAGYITPVPGGVGPMTITML 270 (285)
T ss_pred cCH---HHcCCCCEEEEccccccC----------CCCee---CCccHHHH--------HhhceEecCCCCCchHHHHHHH
Confidence 876 457999999999965532 24433 35532111 1122568897777654444443
Q ss_pred HH
Q 021995 271 AA 272 (304)
Q Consensus 271 ~~ 272 (304)
..
T Consensus 271 l~ 272 (285)
T PRK14189 271 LV 272 (285)
T ss_pred HH
Confidence 33
No 110
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.56 E-value=3.3e-07 Score=91.07 Aligned_cols=116 Identities=16% Similarity=0.091 Sum_probs=82.9
Q ss_pred CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH-----------HhcC-------------ceecCCHHhhcC
Q 021995 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLP 172 (304)
Q Consensus 117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~l~ell~ 172 (304)
=++|||||.|.||+.+|..+...|++|++||+++...+.. .+.| +....++++ +.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~ 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence 3589999999999999999999999999999986543321 1122 234567765 56
Q ss_pred cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEE-EcCCCchhchHHHHHHHHcCCceEEEeecCC
Q 021995 173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWN 237 (304)
Q Consensus 173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilV-n~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~ 237 (304)
+||+|+.++|...+.+..+-.++-+.++++++|. |+|.-++ ..+.+++.. ..+..++.-|.
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~ 145 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFN 145 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccC
Confidence 9999999999888877776566666778888876 6665444 456666643 33445666554
No 111
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.56 E-value=3.4e-07 Score=90.69 Aligned_cols=183 Identities=19% Similarity=0.206 Sum_probs=114.5
Q ss_pred eee-ccccccchhchhHHHhcCC-CcEEEEEeeecccCCCCcccHHHHHhCCcEEEEcCCCC----------hhHHHHHH
Q 021995 13 AFA-SSGFLRSSSRFSRHYASSG-SKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSN----------VVSVAEDE 80 (304)
Q Consensus 13 ~~~-~~~~~~~~~~~~~~l~~~~-~lk~i~~~~~G~d~~~~~~d~~~~~~~gI~v~n~~g~~----------~~~vAE~a 80 (304)
..| .+.++.-..+-.+++.... .-.+|+.+....+ ..-++.+.++||++..---.. -.++|+.+
T Consensus 62 ~v~~~diilkV~~P~~~e~~~l~~g~~li~~l~p~~~----~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IA 137 (509)
T PRK09424 62 AVWQSDIILKVNAPSDDEIALLREGATLVSFIWPAQN----PELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIA 137 (509)
T ss_pred ccccCCEEEEeCCCCHHHHHhcCCCCEEEEEeCcccC----HHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhh
Confidence 345 4556666666677776654 4566666655443 223667899999988632211 12333333
Q ss_pred HHHHHHHH-hCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc
Q 021995 81 LMRILILV-RNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET 159 (304)
Q Consensus 81 l~~~L~~~-R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~ 159 (304)
=....... ..+ +.+..... .......+.+|.|+|.|.+|...++.++.+|++|+++|+++...+.++++
T Consensus 138 Gy~Av~~aa~~~---------~~~~~g~~-taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 138 GYRAVIEAAHEF---------GRFFTGQI-TAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM 207 (509)
T ss_pred HHHHHHHHHHHh---------cccCCCce-eccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence 21111111 111 11111000 00113568999999999999999999999999999999988778888888
Q ss_pred Cceec--CC-------------------------HHhhcCcCCEEEEcCCCCh-hhhccccHHHHhcCCCCCEEEEcC
Q 021995 160 GAKFE--ED-------------------------LDTMLPKCDIVVVNTPLTE-KTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 160 g~~~~--~~-------------------------l~ell~~aDvVi~~~p~~~-~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
|.+.. +. +.+.+.++|+|+.|..... ....++.++.++.||+|+++|+++
T Consensus 208 GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 208 GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred CCeEEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 87632 11 0112357999999875321 122455689999999999999997
No 112
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.55 E-value=1.3e-07 Score=79.64 Aligned_cols=92 Identities=23% Similarity=0.351 Sum_probs=65.5
Q ss_pred EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc--------------CceecCCHHhhcCcCCEEEEcCCCC
Q 021995 119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTMLPKCDIVVVNTPLT 184 (304)
Q Consensus 119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~--------------g~~~~~~l~ell~~aDvVi~~~p~~ 184 (304)
+|+|+|.|++|.++|..|...|.+|..|.|++...+...+. ......+++++++++|+|++++|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 68999999999999999999999999999975322222221 1234578999999999999999954
Q ss_pred hhhhccccHHHHhcCCCCCEEEEcCCCc
Q 021995 185 EKTRGMFDKDRIAKMKKGVLIVNNARGA 212 (304)
Q Consensus 185 ~~t~~~i~~~~l~~mk~g~ilVn~~rg~ 212 (304)
. .+.+ -++....++++..+|++..|-
T Consensus 81 ~-~~~~-~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 81 A-HREV-LEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp G-HHHH-HHHHTTTSHTT-EEEETS-SE
T ss_pred H-HHHH-HHHHhhccCCCCEEEEecCCc
Confidence 2 2223 355666778999999998774
No 113
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.51 E-value=1.2e-06 Score=80.56 Aligned_cols=129 Identities=21% Similarity=0.199 Sum_probs=89.0
Q ss_pred cccccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995 111 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 189 (304)
Q Consensus 111 ~~~~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~ 189 (304)
.+.++.||+|+|||. |.+|+.+|.+|...|+.|++|... ..++.+.+++||+|+++++.. +
T Consensus 152 ~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~----~ 213 (284)
T PRK14179 152 YNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRG----H 213 (284)
T ss_pred hCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCcc----c
Confidence 355789999999999 999999999999999999998421 126889999999999999854 4
Q ss_pred cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHH
Q 021995 190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR 269 (304)
Q Consensus 190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~ 269 (304)
++.... +|+|+++||+|-..+. +|++.| ||-..+- .-.--.+||=-+|--.=+...
T Consensus 214 ~v~~~~---ik~GavVIDvgin~~~----------~gkl~G---DVdf~~v--------~~~a~~iTPVPGGVGp~T~a~ 269 (284)
T PRK14179 214 FVTKEF---VKEGAVVIDVGMNRDE----------NGKLIG---DVDFDEV--------AEVASYITPVPGGVGPMTITM 269 (284)
T ss_pred cCCHHH---ccCCcEEEEecceecC----------CCCeec---CccHHHH--------HhhccEecCCCCCchHHHHHH
Confidence 565544 8999999999855432 244433 5532211 011245899777765555554
Q ss_pred HHHHHHHHHHHH
Q 021995 270 YAAGVKDMLDRY 281 (304)
Q Consensus 270 ~~~~~~~~l~~~ 281 (304)
+...+.+..+++
T Consensus 270 L~~N~~~a~~~~ 281 (284)
T PRK14179 270 LMEQTYQAALRS 281 (284)
T ss_pred HHHHHHHHHHHH
Confidence 444444433333
No 114
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.50 E-value=3.5e-07 Score=84.68 Aligned_cols=79 Identities=25% Similarity=0.357 Sum_probs=66.0
Q ss_pred ccccCCCEEEEEe-eChhhHHHHHHhccCCCeEEEEc-CCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995 112 AYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHD-RVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 189 (304)
Q Consensus 112 ~~~L~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~d-r~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~ 189 (304)
+.++.||+|+||| .|.||+.+|.+|...|+.|++|+ ++. ++++++++||+|+++++...
T Consensus 153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~---- 213 (296)
T PRK14188 153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPE---- 213 (296)
T ss_pred CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChh----
Confidence 4478999999999 99999999999999999999995 532 47889999999999998643
Q ss_pred cccHHHHhcCCCCCEEEEcCCCc
Q 021995 190 MFDKDRIAKMKKGVLIVNNARGA 212 (304)
Q Consensus 190 ~i~~~~l~~mk~g~ilVn~~rg~ 212 (304)
.+.... +|+|+++||+|--.
T Consensus 214 ~v~~~~---lk~GavVIDvGin~ 233 (296)
T PRK14188 214 MVKGDW---IKPGATVIDVGINR 233 (296)
T ss_pred hcchhe---ecCCCEEEEcCCcc
Confidence 444433 89999999998554
No 115
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.50 E-value=3.2e-07 Score=83.65 Aligned_cols=101 Identities=16% Similarity=0.228 Sum_probs=71.7
Q ss_pred CEEEEEeeChhhHHHHHHhccCC---CeEEEEcCCCCChhHHHh-cCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFN---CNLLYHDRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 193 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G---~~V~~~dr~~~~~~~~~~-~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~ 193 (304)
++|+|||+|.||+.+++.+...| .+|.+++|++...+...+ +|+....+.++++.++|+|++|+|.. ....++ +
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~-~ 80 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVL-S 80 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHH-H
Confidence 58999999999999999998878 789999997654444444 46666667888899999999999843 222222 2
Q ss_pred HHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995 194 DRIAKMKKGVLIVNNARGAIMDTQAVVDACS 224 (304)
Q Consensus 194 ~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~ 224 (304)
+....+ +.++|.+.-|- ..+.+.+.+.
T Consensus 81 ~l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 81 ELKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 232323 46788887664 4556665554
No 116
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=98.46 E-value=9e-07 Score=83.84 Aligned_cols=95 Identities=13% Similarity=0.140 Sum_probs=75.4
Q ss_pred hHHHHHHhccCCCeEEEEcCCCC-----ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCC
Q 021995 129 GKLLLQRLKPFNCNLLYHDRVKM-----DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 203 (304)
Q Consensus 129 G~~lA~~l~~~G~~V~~~dr~~~-----~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ 203 (304)
|..+|..|...|++|++||++.. ..+...+.|+....+..+++++||+|++++|....++.++ ......++++.
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence 78899999888999999999764 2233455677777788899999999999999765466666 46778899999
Q ss_pred EEEEcCCCchhch-HHHHHHHH
Q 021995 204 LIVNNARGAIMDT-QAVVDACS 224 (304)
Q Consensus 204 ilVn~~rg~~vd~-~aL~~aL~ 224 (304)
++||++.++.... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999887766 56666664
No 117
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.44 E-value=6.1e-07 Score=82.10 Aligned_cols=90 Identities=22% Similarity=0.355 Sum_probs=73.2
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCC-CChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 192 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~-~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~ 192 (304)
-|.||+|+|||+|+-|++-|..|+..|.+|++--|.. .+.+.+.+.|.+.. +.+|+.+++|+|++.+|...+ ..+..
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~-~v~ea~k~ADvim~L~PDe~q-~~vy~ 92 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVY-TVEEAAKRADVVMILLPDEQQ-KEVYE 92 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEee-cHHHHhhcCCEEEEeCchhhH-HHHHH
Confidence 4899999999999999999999999999987655544 34667778888765 899999999999999996543 34455
Q ss_pred HHHHhcCCCCCEE
Q 021995 193 KDRIAKMKKGVLI 205 (304)
Q Consensus 193 ~~~l~~mk~g~il 205 (304)
++.-+.|+.|..|
T Consensus 93 ~~I~p~Lk~G~aL 105 (338)
T COG0059 93 KEIAPNLKEGAAL 105 (338)
T ss_pred HHhhhhhcCCceE
Confidence 5777888888855
No 118
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.44 E-value=8.4e-07 Score=80.90 Aligned_cols=99 Identities=19% Similarity=0.323 Sum_probs=78.1
Q ss_pred CEEEEEeeChhhHHHHHHhccCC----CeEEEEcCCCCChh-HHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 192 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G----~~V~~~dr~~~~~~-~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~ 192 (304)
++|||||+|+||++++.-|...| .+|++.+|+..... ...++|+....+.+++..++|+|++++.. . . -
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKP--q---~-~ 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKP--Q---D-L 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeCh--H---h-H
Confidence 58999999999999999998888 57999999876553 66677776566778999999999999962 2 1 1
Q ss_pred HHHHhcCC---CCCEEEEcCCCchhchHHHHHHHH
Q 021995 193 KDRIAKMK---KGVLIVNNARGAIMDTQAVVDACS 224 (304)
Q Consensus 193 ~~~l~~mk---~g~ilVn~~rg~~vd~~aL~~aL~ 224 (304)
.+.++.++ ++.++|.++-| +..+.|.+.|.
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~ 108 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLG 108 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcC
Confidence 45666665 79999999877 45566777665
No 119
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.43 E-value=8.5e-08 Score=84.91 Aligned_cols=134 Identities=11% Similarity=0.116 Sum_probs=90.4
Q ss_pred ChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHh--ccCCCeEE-EEcC
Q 021995 72 NVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRL--KPFNCNLL-YHDR 148 (304)
Q Consensus 72 ~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l--~~~G~~V~-~~dr 148 (304)
.+...++|.+..++...|++.. | . ..++|+|||+|.+|+.+++.+ ...|++++ ++|+
T Consensus 59 ~G~~~~gy~v~~l~~~~~~~l~---------~----------~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~ 118 (213)
T PRK05472 59 FGKRGVGYNVEELLEFIEKILG---------L----------D-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV 118 (213)
T ss_pred cCCCCCCeeHHHHHHHHHHHhC---------C----------C-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC
Confidence 3355567888888888887641 1 1 345899999999999999863 46789876 5676
Q ss_pred CCCChh-HHHhcCceecCCHHhhcCc--CCEEEEcCCCChhh---hccccHHHHhcCCCCCEEEEcCCCchhchHHHHHH
Q 021995 149 VKMDPQ-LEKETGAKFEEDLDTMLPK--CDIVVVNTPLTEKT---RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDA 222 (304)
Q Consensus 149 ~~~~~~-~~~~~g~~~~~~l~ell~~--aDvVi~~~p~~~~t---~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~a 222 (304)
++.... ......+...+++++++++ .|.+++++|..... ..+.......-+....+.+|+.+|.+|+..+|..+
T Consensus 119 d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~ 198 (213)
T PRK05472 119 DPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVE 198 (213)
T ss_pred ChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHH
Confidence 542211 1111112233567777754 99999999976542 22222233344566788999999999999999998
Q ss_pred HHc
Q 021995 223 CSS 225 (304)
Q Consensus 223 L~~ 225 (304)
|..
T Consensus 199 l~~ 201 (213)
T PRK05472 199 LQT 201 (213)
T ss_pred HHH
Confidence 865
No 120
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.42 E-value=1.1e-06 Score=80.78 Aligned_cols=103 Identities=14% Similarity=0.274 Sum_probs=72.6
Q ss_pred CEEEEEeeChhhHHHHHHhccCC----CeEEEEcCCCCC-hhHH-Hhc-CceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMD-PQLE-KET-GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G----~~V~~~dr~~~~-~~~~-~~~-g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
.+|+|||+|+||..+++.|...| .+|.+|+++... .... ... ++....+..+++.++|+|++|+|.. ....+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~-~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPL-AVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHH-HHHHH
Confidence 47999999999999999998777 689999885421 1111 222 2333467888899999999999932 23333
Q ss_pred ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 224 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~ 224 (304)
+ .+..+.++++..+|.+.-| +..+.|.+.+.
T Consensus 81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~ 111 (277)
T PRK06928 81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITP 111 (277)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 2 3444556788899999888 55667777664
No 121
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.39 E-value=1.1e-06 Score=76.94 Aligned_cols=90 Identities=14% Similarity=0.225 Sum_probs=65.5
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCCh-hHH-HhcC--ceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLE-KETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 193 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~-~~~-~~~g--~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~ 193 (304)
++++|+|.|+||..+|++|...|++|++-+++..+. +.. +.++ +.. .+.++..+.+|+|++++|..... .+ .+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~-~~~~dA~~~aDVVvLAVP~~a~~-~v-~~ 78 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITG-GSNEDAAALADVVVLAVPFEAIP-DV-LA 78 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhcccccc-CChHHHHhcCCEEEEeccHHHHH-hH-HH
Confidence 589999999999999999999999999886654322 222 2222 223 46788999999999999975331 22 24
Q ss_pred HHHhcCCCCCEEEEcCCC
Q 021995 194 DRIAKMKKGVLIVNNARG 211 (304)
Q Consensus 194 ~~l~~mk~g~ilVn~~rg 211 (304)
++...++ |.++|++.-+
T Consensus 79 ~l~~~~~-~KIvID~tnp 95 (211)
T COG2085 79 ELRDALG-GKIVIDATNP 95 (211)
T ss_pred HHHHHhC-CeEEEecCCC
Confidence 5555555 8999999865
No 122
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.37 E-value=1.2e-06 Score=80.08 Aligned_cols=107 Identities=21% Similarity=0.304 Sum_probs=73.7
Q ss_pred CEEEEEeeChhhHHHHHHhccC--CCe-EEEEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPF--NCN-LLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 193 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~--G~~-V~~~dr~~~~~~~-~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~ 193 (304)
.+|||||+|.||+.+++.+... +++ +.++|+++...+. .+..+...+.++++++.++|+|+.|.|.... . +
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~--~---~ 76 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAV--E---E 76 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHH--H---H
Confidence 4899999999999999988764 577 4578887543332 2344566667899999999999999874322 1 2
Q ss_pred HHHhcCCCCCEEEEcCCCchhch---HHHHHHHHcCCce
Q 021995 194 DRIAKMKKGVLIVNNARGAIMDT---QAVVDACSSGHIA 229 (304)
Q Consensus 194 ~~l~~mk~g~ilVn~~rg~~vd~---~aL~~aL~~g~i~ 229 (304)
-....++.|.-++.++.|.+.|. +.|.++.++++..
T Consensus 77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~ 115 (265)
T PRK13304 77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK 115 (265)
T ss_pred HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence 22334556666777887777663 4566766665543
No 123
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.37 E-value=1.5e-06 Score=77.98 Aligned_cols=106 Identities=14% Similarity=0.256 Sum_probs=70.7
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCC---Ce-EEEEcCC-CCChh-HHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFN---CN-LLYHDRV-KMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 189 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G---~~-V~~~dr~-~~~~~-~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~ 189 (304)
..++|+|||.|+||+.+++.+...| .+ +++++++ +...+ ....+++....+++++++++|+|++++|... .+.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~-~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSA-HEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHH-HHH
Confidence 3568999999999999999887655 33 6778764 22222 2334566666788899999999999999432 222
Q ss_pred cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcC
Q 021995 190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 226 (304)
Q Consensus 190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g 226 (304)
++ ++.-..++ +.++|.++-|- +.+.|.+.+..+
T Consensus 82 v~-~~l~~~~~-~~~vis~~~gi--~~~~l~~~~~~~ 114 (245)
T PRK07634 82 LL-AELSPLLS-NQLVVTVAAGI--GPSYLEERLPKG 114 (245)
T ss_pred HH-HHHHhhcc-CCEEEEECCCC--CHHHHHHHcCCC
Confidence 22 23222334 67899998774 444566666543
No 124
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.35 E-value=1.5e-06 Score=80.14 Aligned_cols=80 Identities=24% Similarity=0.393 Sum_probs=67.7
Q ss_pred ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
+.++.|+++.|||.|. +|+.+|..|...|++|+.+++.. .++.+.+++||+|+.+++. .++
T Consensus 153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~----p~~ 214 (286)
T PRK14175 153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGK----PGL 214 (286)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCC----Ccc
Confidence 4478999999999999 99999999999999999888632 2688899999999999984 346
Q ss_pred ccHHHHhcCCCCCEEEEcCCCc
Q 021995 191 FDKDRIAKMKKGVLIVNNARGA 212 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg~ 212 (304)
+.++. +|+|+++||+|-..
T Consensus 215 i~~~~---vk~gavVIDvGi~~ 233 (286)
T PRK14175 215 VTKDV---VKEGAVIIDVGNTP 233 (286)
T ss_pred cCHHH---cCCCcEEEEcCCCc
Confidence 77664 68999999999654
No 125
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.34 E-value=8.5e-07 Score=86.28 Aligned_cols=96 Identities=26% Similarity=0.412 Sum_probs=71.5
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCC-CeEEEEcCCCCChh-HHHhcCcee--cCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQ-LEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG 189 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~-~~~~~g~~~--~~~l~ell~~aDvVi~~~p~~~~t~~ 189 (304)
.+.|++|+|+|+|.||+.+++.|...| .+|++++|+..... .+...+... .+++.+.+.++|+|+.|++.+ ..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~---~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAP---HP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCC---Cc
Confidence 478999999999999999999999999 67999999864433 444445322 246678889999999997643 35
Q ss_pred cccHHHHhcCC----CCCEEEEcCCCc
Q 021995 190 MFDKDRIAKMK----KGVLIVNNARGA 212 (304)
Q Consensus 190 ~i~~~~l~~mk----~g~ilVn~~rg~ 212 (304)
+++.+.++.+. ...++||.+...
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~Pr 280 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAVPR 280 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 67777776642 235888887543
No 126
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.34 E-value=1.2e-06 Score=82.09 Aligned_cols=94 Identities=27% Similarity=0.366 Sum_probs=67.2
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCC-CeEEEEcCCCCC-hhHHHhcCceec--CCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMD-PQLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G-~~V~~~dr~~~~-~~~~~~~g~~~~--~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
+.|++|+|||.|.||+.+++.|+..| .+|++++|++.. .+.+.++|.... +++.+.+.++|+|+.++|.... ..+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence 68999999999999999999998866 568999998643 345556665432 3466788899999999985533 222
Q ss_pred ccHHHHhcC-CCCCEEEEcCC
Q 021995 191 FDKDRIAKM-KKGVLIVNNAR 210 (304)
Q Consensus 191 i~~~~l~~m-k~g~ilVn~~r 210 (304)
+ +..++.. +++.++||++.
T Consensus 255 ~-~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeCC
Confidence 2 3333333 35778888874
No 127
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.34 E-value=8.6e-06 Score=77.07 Aligned_cols=158 Identities=14% Similarity=0.143 Sum_probs=118.9
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH-HhcC----ceecCCHHhh---cCcCCEEEEcCCCChhhhc
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETG----AKFEEDLDTM---LPKCDIVVVNTPLTEKTRG 189 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-~~~g----~~~~~~l~el---l~~aDvVi~~~p~~~~t~~ 189 (304)
..||+||+|-||+.+|......|++|.+|||+..+-+.+ ++.+ +....+++|+ ++.-.-|++.+........
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 469999999999999999999999999999987544433 2222 3345567765 5566677777755433344
Q ss_pred cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHH
Q 021995 190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR 269 (304)
Q Consensus 190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~ 269 (304)
.| ++++..|.+|-++||-+...--|+....++|.+..|.+.+.-|--.|-=...- |.+ +-|.+.++++.
T Consensus 84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~G-----PSi-----MpGG~~eay~~ 152 (473)
T COG0362 84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHG-----PSI-----MPGGQKEAYEL 152 (473)
T ss_pred HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccC-----CCc-----CCCCCHHHHHH
Confidence 44 68889999999999999999999999999999999999999888776422221 222 45788899998
Q ss_pred HHHHHHHHHHHHHcCCCC
Q 021995 270 YAAGVKDMLDRYFKGEDF 287 (304)
Q Consensus 270 ~~~~~~~~l~~~~~g~~~ 287 (304)
+...+.+ |-.-..|+|.
T Consensus 153 v~pil~~-IaAk~~g~pC 169 (473)
T COG0362 153 VAPILTK-IAAKVDGEPC 169 (473)
T ss_pred HHHHHHH-HHhhcCCCCc
Confidence 8775544 6666668776
No 128
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.32 E-value=5e-07 Score=76.99 Aligned_cols=96 Identities=21% Similarity=0.316 Sum_probs=68.9
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCcee--------------------------cCCH
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF--------------------------EEDL 167 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~--------------------------~~~l 167 (304)
.+...+|.|+|.|+.|+..++.++++|++|+.+|..+...+.....+... ...+
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 96 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF 96 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH
Confidence 56778999999999999999999999999999998653333333333211 1235
Q ss_pred HhhcCcCCEEEEc-CCCChhhhccccHHHHhcCCCCCEEEEcC
Q 021995 168 DTMLPKCDIVVVN-TPLTEKTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 168 ~ell~~aDvVi~~-~p~~~~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
.+.++.+|+|+.+ .-.......++.++.++.||++++++|++
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 6778899999864 33455667899999999999999999997
No 129
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.30 E-value=3.9e-06 Score=63.49 Aligned_cols=66 Identities=32% Similarity=0.473 Sum_probs=56.2
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccC-CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 192 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~-G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~ 192 (304)
.+.+++++|+|.|.+|+.+++.+... +.+|.++|| |+++.+.+.. +.+.
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~----~~~~ 69 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAG----VPVL 69 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCC----CCch
Confidence 58899999999999999999999988 677889987 9999998743 4555
Q ss_pred HHHHhcCCCCCEEEEcC
Q 021995 193 KDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 193 ~~~l~~mk~g~ilVn~~ 209 (304)
++..+.++++.++++++
T Consensus 70 ~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 70 EEATAKINEGAVVIDLA 86 (86)
T ss_pred HHHHHhcCCCCEEEecC
Confidence 66688899999999874
No 130
>PLN00203 glutamyl-tRNA reductase
Probab=98.28 E-value=1.5e-06 Score=86.45 Aligned_cols=96 Identities=20% Similarity=0.308 Sum_probs=71.5
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHH-hc-Cc----eecCCHHhhcCcCCEEEEcCCCChh
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEK-ET-GA----KFEEDLDTMLPKCDIVVVNTPLTEK 186 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~-~~-g~----~~~~~l~ell~~aDvVi~~~p~~~~ 186 (304)
++.+++|+|||.|.||+.+++.|...|+ +|++++|+....+... .+ +. ...+++.+.+.++|+|+.++|..
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~-- 340 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSE-- 340 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCC--
Confidence 3779999999999999999999999997 5999999865444333 33 22 12346778899999999998744
Q ss_pred hhccccHHHHhcCCC-------CCEEEEcCCCc
Q 021995 187 TRGMFDKDRIAKMKK-------GVLIVNNARGA 212 (304)
Q Consensus 187 t~~~i~~~~l~~mk~-------g~ilVn~~rg~ 212 (304)
..++.++.++.+++ ..+|||++-+.
T Consensus 341 -~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 341 -TPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred -CCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 34777888877642 24788887443
No 131
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.28 E-value=1.5e-06 Score=84.72 Aligned_cols=94 Identities=26% Similarity=0.415 Sum_probs=69.6
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChh-HHHhcCce--ecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRG 189 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~-~~~~~g~~--~~~~l~ell~~aDvVi~~~p~~~~t~~ 189 (304)
.+.|++|+|+|.|.||+.+++.|...|+ +|++++|++.... .+..+|.. ...++.+.+.++|+|+.++|... .
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~---~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPH---P 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCC---c
Confidence 3789999999999999999999999998 7999999764433 44555532 22456677889999999987542 3
Q ss_pred cccHHHHhcC-----CCCCEEEEcCC
Q 021995 190 MFDKDRIAKM-----KKGVLIVNNAR 210 (304)
Q Consensus 190 ~i~~~~l~~m-----k~g~ilVn~~r 210 (304)
++..+.++.+ +.+.++||++-
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 5666666553 24578888864
No 132
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.27 E-value=5.9e-06 Score=76.33 Aligned_cols=108 Identities=12% Similarity=0.158 Sum_probs=74.1
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCce-----------ecCCHHhhcCcCCEEEEcCCCChh
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-----------FEEDLDTMLPKCDIVVVNTPLTEK 186 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-----------~~~~l~ell~~aDvVi~~~p~~~~ 186 (304)
++|+|||.|.||..+|..|...|++|+.++|++...+...+.|.. ...+.+++ +.+|+|++++|.. +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence 479999999999999999998899999999865444444443431 13445555 8999999999954 3
Q ss_pred hhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995 187 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 229 (304)
Q Consensus 187 t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ 229 (304)
+..++ +...+.+.+++.+|....| +-.++.+.+.+....+.
T Consensus 79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~ 119 (304)
T PRK06522 79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL 119 (304)
T ss_pred HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence 33333 3444556777888888777 22345556656555544
No 133
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.25 E-value=2.4e-06 Score=75.90 Aligned_cols=94 Identities=17% Similarity=0.236 Sum_probs=64.3
Q ss_pred CEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh--------cCc--e-ecCCHHhhcCcCCEEEEcCCCCh
Q 021995 118 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------TGA--K-FEEDLDTMLPKCDIVVVNTPLTE 185 (304)
Q Consensus 118 ~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~--------~g~--~-~~~~l~ell~~aDvVi~~~p~~~ 185 (304)
++|+||| .|.||+.+++.|...|++|.+++|++...+.... .|. . ...+..+.++++|+|++++|...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~ 80 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH 80 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence 4799997 9999999999999999999999987644332221 111 0 12356778899999999999543
Q ss_pred hhhccccHHHHhcCCCCCEEEEcCCCchh
Q 021995 186 KTRGMFDKDRIAKMKKGVLIVNNARGAIM 214 (304)
Q Consensus 186 ~t~~~i~~~~l~~mk~g~ilVn~~rg~~v 214 (304)
...++ ++.-..++ +.++|++.-|--.
T Consensus 81 -~~~~l-~~l~~~l~-~~vvI~~~ngi~~ 106 (219)
T TIGR01915 81 -VLKTL-ESLRDELS-GKLVISPVVPLAS 106 (219)
T ss_pred -HHHHH-HHHHHhcc-CCEEEEeccCcee
Confidence 22222 22223343 5899999877544
No 134
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.24 E-value=1.9e-06 Score=74.36 Aligned_cols=103 Identities=15% Similarity=0.234 Sum_probs=71.2
Q ss_pred EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh------------------------cCceecCCHHhhcCcC
Q 021995 119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE------------------------TGAKFEEDLDTMLPKC 174 (304)
Q Consensus 119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~------------------------~g~~~~~~l~ell~~a 174 (304)
+|+|||.|.||+.+|..+...|++|..||+++...+...+ .......+++++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 6999999999999999999999999999997643221110 0134557888888 99
Q ss_pred CEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995 175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 224 (304)
Q Consensus 175 DvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~ 224 (304)
|+|+=++|-+.+.+.-+-+++-+.++++++|...+.+ +....|...+.
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~ 127 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALS 127 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSS
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccC
Confidence 9999999988877776667777788999998766544 44555655553
No 135
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.24 E-value=2.3e-05 Score=70.13 Aligned_cols=131 Identities=18% Similarity=0.158 Sum_probs=90.5
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCCe---EEEEcCCC----CCh--------hHHHhcCceec-CCHHhhcCcCCE
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN---LLYHDRVK----MDP--------QLEKETGAKFE-EDLDTMLPKCDI 176 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~---V~~~dr~~----~~~--------~~~~~~g~~~~-~~l~ell~~aDv 176 (304)
..+.++++.|+|.|.+|+.+++.|...|++ ++.+||+. ... +.++..+.... .++.+.++++|+
T Consensus 21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv 100 (226)
T cd05311 21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV 100 (226)
T ss_pred CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence 358899999999999999999999988985 99999983 221 12233321111 267788889999
Q ss_pred EEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCC-ceEEEeecCCCCCCCCCCCccCCCCeEE
Q 021995 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH-IAGYSGDVWNPQPAPKDHPWRYMPNQAM 255 (304)
Q Consensus 177 Vi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~-i~ga~lDV~~~ep~~~~~~l~~~~nv~l 255 (304)
|+.+.| .++++++.++.|.++.++...+... .+.-+.++.+.|- +.. |-. +.+ ..+..|+++
T Consensus 101 lIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP~--~e~~~~~A~~~ga~i~a---~G~--~~~-----~~Q~nn~~~ 163 (226)
T cd05311 101 FIGVSR-----PGVVKKEMIKKMAKDPIVFALANPV--PEIWPEEAKEAGADIVA---TGR--SDF-----PNQVNNVLG 163 (226)
T ss_pred EEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCCC--CcCCHHHHHHcCCcEEE---eCC--CCC-----ccccceeee
Confidence 999887 3677889999999999999988443 4554555555443 232 211 111 235578888
Q ss_pred ccCCC
Q 021995 256 TPHVS 260 (304)
Q Consensus 256 TPHia 260 (304)
=|=++
T Consensus 164 fPg~~ 168 (226)
T cd05311 164 FPGIF 168 (226)
T ss_pred cchhh
Confidence 88765
No 136
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.22 E-value=5.4e-06 Score=78.18 Aligned_cols=107 Identities=19% Similarity=0.301 Sum_probs=74.8
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCce-----------------ecCCHHhhcCcCCEEEEc
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-----------------FEEDLDTMLPKCDIVVVN 180 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-----------------~~~~l~ell~~aDvVi~~ 180 (304)
++|+|||.|.||..+|..|...|++|.+++|+.. .+...+.|.. ...+. +.+..+|+|+++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~ 80 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT 80 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence 5799999999999999999999999999998542 2333333322 12344 567899999999
Q ss_pred CCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995 181 TPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 229 (304)
Q Consensus 181 ~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ 229 (304)
+|... ...++ ++..+.++++.++|.+..| +-..+.+.+.+...++.
T Consensus 81 vk~~~-~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~ 126 (341)
T PRK08229 81 VKSAA-TADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVL 126 (341)
T ss_pred ecCcc-hHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEE
Confidence 98643 34443 4566667889999988654 34455666666655443
No 137
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.18 E-value=2.5e-06 Score=73.96 Aligned_cols=137 Identities=13% Similarity=0.161 Sum_probs=76.1
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh--------------------cCceecCCHHhhcCcCCEE
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------------TGAKFEEDLDTMLPKCDIV 177 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~--------------------~g~~~~~~l~ell~~aDvV 177 (304)
++|+|||+|.+|-.+|..|...|++|+++|.++...+...+ .......+.++.++++|++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 58999999999999999999999999999987432211110 1123446777888999999
Q ss_pred EEcCCCChhhhccc--------cHHHHhcCCCCCEEEEcCCCchhchHHHH-HHHHcCCceEEEee-cCCCCCCCCCCC-
Q 021995 178 VVNTPLTEKTRGMF--------DKDRIAKMKKGVLIVNNARGAIMDTQAVV-DACSSGHIAGYSGD-VWNPQPAPKDHP- 246 (304)
Q Consensus 178 i~~~p~~~~t~~~i--------~~~~l~~mk~g~ilVn~~rg~~vd~~aL~-~aL~~g~i~ga~lD-V~~~ep~~~~~~- 246 (304)
++|+|....-.+.. -++..+.++++.++|.-|.-++=..+.+. ..|++....+.-.+ +|-+|-+.+...
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~ 160 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI 160 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence 99998433222222 23455678999999999987776666443 44444332100000 245554443332
Q ss_pred --ccCCCCeE
Q 021995 247 --WRYMPNQA 254 (304)
Q Consensus 247 --l~~~~nv~ 254 (304)
+...|.++
T Consensus 161 ~d~~~~~rvV 170 (185)
T PF03721_consen 161 EDFRNPPRVV 170 (185)
T ss_dssp HHHHSSSEEE
T ss_pred hhccCCCEEE
Confidence 44556664
No 138
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.18 E-value=1e-05 Score=74.94 Aligned_cols=108 Identities=15% Similarity=0.194 Sum_probs=74.3
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCce-------------ecCCHHhhcCcCCEEEEcCCCC
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-------------FEEDLDTMLPKCDIVVVNTPLT 184 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-------------~~~~l~ell~~aDvVi~~~p~~ 184 (304)
++|+|||.|.||..+|..|...|++|++++| +...+...+.|.. ...+.++....+|+|++++|..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence 4799999999999999999988999999998 4333333333321 1235566678999999999954
Q ss_pred hhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995 185 EKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 229 (304)
Q Consensus 185 ~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ 229 (304)
. +..++ ++..+.++++.++|.+.-| +-..+.+.+.+.+.++.
T Consensus 80 ~-~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 80 Q-LDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred C-HHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 2 33332 3444556778888877665 33456677677655544
No 139
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.17 E-value=6.8e-06 Score=77.03 Aligned_cols=101 Identities=19% Similarity=0.203 Sum_probs=68.0
Q ss_pred CCCEEEEEeeChhhHHHHHHhcc-CC-CeEEEEcCCCCChhHHHhc----C--ceecCCHHhhcCcCCEEEEcCCCChhh
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEKET----G--AKFEEDLDTMLPKCDIVVVNTPLTEKT 187 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~-~G-~~V~~~dr~~~~~~~~~~~----g--~~~~~~l~ell~~aDvVi~~~p~~~~t 187 (304)
..++|+|||.|.+|+.+++.+.. ++ .+|.+|+|++.+.+.+.+. + +....++++.+++||+|+++.|..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence 56799999999999999985543 44 6799999987554433322 3 445678899999999998888754
Q ss_pred hccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHH
Q 021995 188 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDAC 223 (304)
Q Consensus 188 ~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL 223 (304)
..++.. +.+++|+ +||+.-........+-..+
T Consensus 201 ~pvl~~---~~l~~g~-~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 201 EPLVRG---EWLKPGT-HLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred CCEecH---HHcCCCC-EEEeeCCCCcccccCCHHH
Confidence 345554 3468998 4554433333333343333
No 140
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=98.15 E-value=1.8e-05 Score=72.15 Aligned_cols=125 Identities=15% Similarity=0.160 Sum_probs=77.8
Q ss_pred HHHHhccCC--CeEEEEcCCCCChhHHHhcCce--ecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEE
Q 021995 132 LLQRLKPFN--CNLLYHDRVKMDPQLEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVN 207 (304)
Q Consensus 132 lA~~l~~~G--~~V~~~dr~~~~~~~~~~~g~~--~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn 207 (304)
+|+.|+..| .+|++||+++...+.+.+.|+. ...+ .+.++++|+|++|+|... +..++ ++....+++|++++|
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~DlvvlavP~~~-~~~~l-~~~~~~~~~~~iv~D 77 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAVPVSA-IEDVL-EEIAPYLKPGAIVTD 77 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S-HHH-HHHHH-HHHHCGS-TTSEEEE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcCCHHH-HHHHH-HHhhhhcCCCcEEEE
Confidence 466777666 8899999987666666677763 2223 578899999999999543 33333 566777999999999
Q ss_pred cCCCchhchHHHHHHHHcCCceEEEe-ecCCCC---CCCCCCCccCCCCeEEccCCC
Q 021995 208 NARGAIMDTQAVVDACSSGHIAGYSG-DVWNPQ---PAPKDHPWRYMPNQAMTPHVS 260 (304)
Q Consensus 208 ~~rg~~vd~~aL~~aL~~g~i~ga~l-DV~~~e---p~~~~~~l~~~~nv~lTPHia 260 (304)
++.-+.--.+++.+.+. ......+. -.|-+| |...+..++.-.++++||+-.
T Consensus 78 v~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258)
T PF02153_consen 78 VGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258)
T ss_dssp --S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred eCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence 99877666666666666 22232222 122222 222356788888999999876
No 141
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.14 E-value=2.6e-05 Score=71.79 Aligned_cols=124 Identities=21% Similarity=0.286 Sum_probs=87.5
Q ss_pred cccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995 111 RAYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 189 (304)
Q Consensus 111 ~~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~ 189 (304)
.+.++.||++.|||-+. +|+.++..|...|+.|+.++.. ..++.+.+++||+|+.+++. .+
T Consensus 152 ~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~--------------t~~l~~~~~~ADIvI~AvG~----p~ 213 (284)
T PRK14190 152 YNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK--------------TKNLAELTKQADILIVAVGK----PK 213 (284)
T ss_pred cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC--------------chhHHHHHHhCCEEEEecCC----CC
Confidence 34578999999999755 8999999999999999988642 13688999999999999963 35
Q ss_pred cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHH
Q 021995 190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR 269 (304)
Q Consensus 190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~ 269 (304)
++..+.+ |+|+++||+|...+. +|++. =||-..+- . ..--.+||--+|--.-+...
T Consensus 214 ~i~~~~i---k~gavVIDvGi~~~~----------~gkl~---GDvd~e~v-------~-~~a~~iTPVPGGVGpvT~a~ 269 (284)
T PRK14190 214 LITADMV---KEGAVVIDVGVNRLE----------NGKLC---GDVDFDNV-------K-EKASYITPVPGGVGPMTITM 269 (284)
T ss_pred cCCHHHc---CCCCEEEEeeccccC----------CCCee---ccCcHHHH-------h-hhceEecCCCCCChHHHHHH
Confidence 7887775 899999999966532 33433 35532110 1 11256899888876555554
Q ss_pred HHHHHHH
Q 021995 270 YAAGVKD 276 (304)
Q Consensus 270 ~~~~~~~ 276 (304)
+...+++
T Consensus 270 L~~N~~~ 276 (284)
T PRK14190 270 LMHNTVE 276 (284)
T ss_pred HHHHHHH
Confidence 4444433
No 142
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=98.13 E-value=9.6e-06 Score=68.63 Aligned_cols=81 Identities=25% Similarity=0.343 Sum_probs=58.1
Q ss_pred ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
+.++.||++.|||-+. +|+.++..|...|+.|+.++... .++++.+++||+|+.+++- .++
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~----~~~ 92 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGK----PNL 92 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSS----TT-
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeecc----ccc
Confidence 3479999999999985 99999999999999999887632 4788999999999999973 355
Q ss_pred ccHHHHhcCCCCCEEEEcCCCch
Q 021995 191 FDKDRIAKMKKGVLIVNNARGAI 213 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg~~ 213 (304)
|..+ .+|+|+++||++.-..
T Consensus 93 i~~~---~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 93 IKAD---WIKPGAVVIDVGINYV 112 (160)
T ss_dssp B-GG---GS-TTEEEEE--CEEE
T ss_pred cccc---cccCCcEEEecCCccc
Confidence 6544 4699999999986554
No 143
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.12 E-value=1.3e-05 Score=73.79 Aligned_cols=80 Identities=19% Similarity=0.329 Sum_probs=66.2
Q ss_pred ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
+.++.||++.|||-|. +|+.++..|...|+.|+.+++.. .++++.+++||+|+.+++-. ++
T Consensus 154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvi~avG~p----~~ 215 (285)
T PRK10792 154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT--------------KNLRHHVRNADLLVVAVGKP----GF 215 (285)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC--------------CCHHHHHhhCCEEEEcCCCc----cc
Confidence 4578999999999999 99999999999999999987531 36889999999999999532 45
Q ss_pred ccHHHHhcCCCCCEEEEcCCCc
Q 021995 191 FDKDRIAKMKKGVLIVNNARGA 212 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg~ 212 (304)
+.. ..+|+|+++||+|-..
T Consensus 216 v~~---~~vk~gavVIDvGin~ 234 (285)
T PRK10792 216 IPG---EWIKPGAIVIDVGINR 234 (285)
T ss_pred ccH---HHcCCCcEEEEccccc
Confidence 655 4469999999998443
No 144
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=98.09 E-value=1e-05 Score=73.81 Aligned_cols=97 Identities=19% Similarity=0.330 Sum_probs=63.8
Q ss_pred CCEEEEEeeChhhHHHHHHhccCC----CeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995 117 GKTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 192 (304)
Q Consensus 117 g~~vgIIG~G~IG~~lA~~l~~~G----~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~ 192 (304)
.++|+|||+|+||.++++.|...| .++++++++... .+.....+..+++.++|+|++|+|.. .+..++
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~D~Vilavkp~-~~~~vl- 74 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN------TPFVYLQSNEELAKTCDIIVLAVKPD-LAGKVL- 74 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc------CCeEEeCChHHHHHhCCEEEEEeCHH-HHHHHH-
Confidence 468999999999999999998665 248899886532 23334457778888999999998832 333443
Q ss_pred HHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995 193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 224 (304)
Q Consensus 193 ~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~ 224 (304)
.+....++++ .+|.+.-|- +.+.+.+.+.
T Consensus 75 ~~i~~~l~~~-~iIS~~aGi--~~~~l~~~~~ 103 (260)
T PTZ00431 75 LEIKPYLGSK-LLISICGGL--NLKTLEEMVG 103 (260)
T ss_pred HHHHhhccCC-EEEEEeCCc--cHHHHHHHcC
Confidence 3343445544 556555453 3455555443
No 145
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=98.08 E-value=1.1e-05 Score=74.39 Aligned_cols=97 Identities=16% Similarity=0.252 Sum_probs=63.1
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCC-CeEEEEcCCCCChhHH-HhcCc----eecCCHHhhcCcCCEEEEcCCCChh
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLE-KETGA----KFEEDLDTMLPKCDIVVVNTPLTEK 186 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~~~-~~~g~----~~~~~l~ell~~aDvVi~~~p~~~~ 186 (304)
..+.++++.|+|.|.+|+.++..|...| .+|++++|+..+.+.. ...+. ....++.+.+.++|+|+.++|....
T Consensus 119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~ 198 (278)
T PRK00258 119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMS 198 (278)
T ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCC
Confidence 4688999999999999999999999999 6899999986443322 22221 1111345677899999999996532
Q ss_pred hhccccHHHHhcCCCCCEEEEcC
Q 021995 187 TRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 187 t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
...-...-.+..++++.+++|+.
T Consensus 199 ~~~~~~~~~~~~l~~~~~v~Div 221 (278)
T PRK00258 199 GELPLPPLPLSLLRPGTIVYDMI 221 (278)
T ss_pred CCCCCCCCCHHHcCCCCEEEEee
Confidence 11000011123445666666663
No 146
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=98.08 E-value=3.1e-05 Score=64.18 Aligned_cols=80 Identities=24% Similarity=0.306 Sum_probs=66.1
Q ss_pred ccccCCCEEEEEeeC-hhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 112 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G-~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
+.++.|++|.|+|-+ .+|+.++..|...|+.|..++++. .++++.+++||+|+.+++.. ++
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~----~~ 84 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKP----EK 84 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCC----Cc
Confidence 447999999999975 589999999999999999988632 26888999999999999854 56
Q ss_pred ccHHHHhcCCCCCEEEEcCCCc
Q 021995 191 FDKDRIAKMKKGVLIVNNARGA 212 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg~ 212 (304)
++.+. +|+|++++|++...
T Consensus 85 i~~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 85 VPTEW---IKPGATVINCSPTK 103 (140)
T ss_pred cCHHH---cCCCCEEEEcCCCc
Confidence 76655 68999999998544
No 147
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.07 E-value=1.3e-05 Score=73.68 Aligned_cols=79 Identities=27% Similarity=0.363 Sum_probs=65.8
Q ss_pred ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
+.++.|+++.|||.|. +|+.++..|...|+.|++++... .++.+..++||+|+.++.-. ++
T Consensus 159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvv~AvG~p----~~ 220 (287)
T PRK14176 159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------DDLKKYTLDADILVVATGVK----HL 220 (287)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------CCHHHHHhhCCEEEEccCCc----cc
Confidence 4578999999999999 99999999999999999887421 36888999999999987532 46
Q ss_pred ccHHHHhcCCCCCEEEEcCCC
Q 021995 191 FDKDRIAKMKKGVLIVNNARG 211 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg 211 (304)
+..+ .+|+|+++||+|-.
T Consensus 221 i~~~---~vk~gavVIDvGin 238 (287)
T PRK14176 221 IKAD---MVKEGAVIFDVGIT 238 (287)
T ss_pred cCHH---HcCCCcEEEEeccc
Confidence 6665 56899999999854
No 148
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.06 E-value=1.2e-05 Score=73.86 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=67.7
Q ss_pred ccccCCCEEEEEeeC-hhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 112 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G-~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
+.++.|+++.|+|.+ ..|+.+|..|..+|+.|+.+.++. .++.+.+++||+|+.+++.. ++
T Consensus 147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~----~l 208 (279)
T PRK14178 147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKA----GF 208 (279)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcc----cc
Confidence 457899999999999 899999999999999999887532 36889999999999999732 67
Q ss_pred ccHHHHhcCCCCCEEEEcCCCc
Q 021995 191 FDKDRIAKMKKGVLIVNNARGA 212 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg~ 212 (304)
+.++.+ |+|+++||+|-..
T Consensus 209 v~~~~v---k~GavVIDVgi~~ 227 (279)
T PRK14178 209 ITPDMV---KPGATVIDVGINQ 227 (279)
T ss_pred cCHHHc---CCCcEEEEeeccc
Confidence 877774 9999999998543
No 149
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=98.06 E-value=1.8e-05 Score=76.82 Aligned_cols=91 Identities=16% Similarity=0.357 Sum_probs=65.6
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChh-HHHhcC-c--eecCCHHhhcCcCCEEEEcCCCChhhh
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKETG-A--KFEEDLDTMLPKCDIVVVNTPLTEKTR 188 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~-~~~~~g-~--~~~~~l~ell~~aDvVi~~~p~~~~t~ 188 (304)
.+.|+++.|||.|.||+.+++.|...|+ ++++++|+..+.+ .+..++ . ..++++.+.+.++|+|+.|++.. .
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence 5789999999999999999999999896 5999999864433 333343 2 23356678899999999998753 2
Q ss_pred ccccHHHHhcCCCCCEEEEcC
Q 021995 189 GMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 189 ~~i~~~~l~~mk~g~ilVn~~ 209 (304)
.+|..+... .+..++||.+
T Consensus 255 ~vi~~~~~~--~~~~~~iDLa 273 (414)
T PRK13940 255 YIVTCKYVG--DKPRVFIDIS 273 (414)
T ss_pred eeECHHHhC--CCCeEEEEeC
Confidence 355555432 2335677775
No 150
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.06 E-value=1.6e-05 Score=73.39 Aligned_cols=80 Identities=23% Similarity=0.334 Sum_probs=65.7
Q ss_pred ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
+.++.|+++.|||.|. +|+.++..|...|++|+++++.. .++.+.++++|+|+.+++. + +.
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~-~---~~ 215 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGK-P---EL 215 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCC-C---Cc
Confidence 4578999999999998 99999999999999999998721 2577778999999999962 2 35
Q ss_pred ccHHHHhcCCCCCEEEEcCCCc
Q 021995 191 FDKDRIAKMKKGVLIVNNARGA 212 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg~ 212 (304)
+..+. +++|++++|++-..
T Consensus 216 v~~~~---lk~gavViDvg~n~ 234 (283)
T PRK14192 216 IKKDW---IKQGAVVVDAGFHP 234 (283)
T ss_pred CCHHH---cCCCCEEEEEEEee
Confidence 66554 69999999998544
No 151
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.06 E-value=1.1e-05 Score=74.31 Aligned_cols=123 Identities=20% Similarity=0.230 Sum_probs=85.5
Q ss_pred ccccCCCEEEEEeeC-hhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 112 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G-~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
+.++.|++|.|||-| .+|+.+|..|...|+.|+++.... .++.+.+++||+|+.+++. .++
T Consensus 152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~----p~~ 213 (285)
T PRK14191 152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGK----PDL 213 (285)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCC----CCc
Confidence 457899999999999 899999999999999999885421 2577899999999999973 357
Q ss_pred ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHHH
Q 021995 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRY 270 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~~ 270 (304)
+..+.+ |+|+++||+|-..+- +|++.| ||-..+- ...--.+||--+|--.-+...+
T Consensus 214 i~~~~v---k~GavVIDvGi~~~~----------~gklvG---Dvd~e~v--------~~~a~~iTPVPGGVGpvT~a~L 269 (285)
T PRK14191 214 IKASMV---KKGAVVVDIGINRLN----------DGRLVG---DVDFENV--------APKASFITPVPGGVGPMTIVSL 269 (285)
T ss_pred CCHHHc---CCCcEEEEeeccccc----------CCceec---cccHHHH--------hhhccEEecCCCCChHHHHHHH
Confidence 777765 999999999855421 244433 5432111 0112458997777655544444
Q ss_pred HHHHHH
Q 021995 271 AAGVKD 276 (304)
Q Consensus 271 ~~~~~~ 276 (304)
.+.+.+
T Consensus 270 ~~N~~~ 275 (285)
T PRK14191 270 LENTLI 275 (285)
T ss_pred HHHHHH
Confidence 443433
No 152
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=98.04 E-value=2.8e-05 Score=67.58 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=66.0
Q ss_pred ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHh---cCceec--CC----HHhhcCcCCEEEEcC
Q 021995 112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE---TGAKFE--ED----LDTMLPKCDIVVVNT 181 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~---~g~~~~--~~----l~ell~~aDvVi~~~ 181 (304)
+.++.||++.|||-+. +|+.+|..|...|+.|+.+|.+.... +.. ..-... .+ +.+.+++||+|+.++
T Consensus 57 ~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAv 134 (197)
T cd01079 57 GNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGV 134 (197)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--cccccccccccccccchhhHHHHHhhhCCEEEEcc
Confidence 5689999999999876 79999999999999999997533110 000 000001 12 778999999999999
Q ss_pred CCChhhhcc-ccHHHHhcCCCCCEEEEcCC
Q 021995 182 PLTEKTRGM-FDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 182 p~~~~t~~~-i~~~~l~~mk~g~ilVn~~r 210 (304)
+.. ++ +..+. .|+|+++||+|-
T Consensus 135 G~~----~~~i~~d~---ik~GavVIDVGi 157 (197)
T cd01079 135 PSP----NYKVPTEL---LKDGAICINFAS 157 (197)
T ss_pred CCC----CCccCHHH---cCCCcEEEEcCC
Confidence 843 45 66665 589999999983
No 153
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=98.03 E-value=1.1e-05 Score=74.28 Aligned_cols=95 Identities=18% Similarity=0.247 Sum_probs=73.4
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-cCce------ecCCHHhhcCcCCEEEEcC--CCC
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAK------FEEDLDTMLPKCDIVVVNT--PLT 184 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-~g~~------~~~~l~ell~~aDvVi~~~--p~~ 184 (304)
.+...+|.|||.|-+|...|+.+..+|.+|+..|.+.......+. ++.+ ....+++.+.++|+|+-++ |.
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpg- 243 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPG- 243 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecC-
Confidence 456679999999999999999999999999999987533322222 2222 1245788999999998653 53
Q ss_pred hhhhccccHHHHhcCCCCCEEEEcC
Q 021995 185 EKTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 185 ~~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
.....++.++.+++||||+++||++
T Consensus 244 akaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 244 AKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCCceehhHHHHHhcCCCcEEEEEE
Confidence 3445788899999999999999995
No 154
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.03 E-value=7.3e-05 Score=68.75 Aligned_cols=122 Identities=21% Similarity=0.273 Sum_probs=85.0
Q ss_pred ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
+.++.||++.|||-+. +|+.++..|...|+.|+.+.... .++++..++||+|+++++- .++
T Consensus 151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~----p~~ 212 (282)
T PRK14169 151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVGV----PHF 212 (282)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccCC----cCc
Confidence 4578999999999866 89999999999999999886421 3688999999999999973 357
Q ss_pred ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHHH
Q 021995 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRY 270 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~~ 270 (304)
+..+. +|+|+++||+|-..+. +|++. =||-..+-. -.--.+||=-+|--.-+...+
T Consensus 213 i~~~~---vk~GavVIDvGin~~~----------~gkl~---GDVd~~~v~--------~~a~~iTPVPGGVGp~T~a~L 268 (282)
T PRK14169 213 IGADA---VKPGAVVIDVGISRGA----------DGKLL---GDVDEAAVA--------PIASAITPVPGGVGPMTIASL 268 (282)
T ss_pred cCHHH---cCCCcEEEEeeccccC----------CCCee---ecCcHHHHH--------hhccEecCCCCCcHHHHHHHH
Confidence 77765 5899999999954421 34443 355322111 112468897777655444444
Q ss_pred HHHHH
Q 021995 271 AAGVK 275 (304)
Q Consensus 271 ~~~~~ 275 (304)
...++
T Consensus 269 ~~N~~ 273 (282)
T PRK14169 269 MAQTV 273 (282)
T ss_pred HHHHH
Confidence 33333
No 155
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.99 E-value=2.8e-05 Score=71.28 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=70.7
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH-Hhc---CceecCCHHh-hcCcCCEEEEcCCCCh--h
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KET---GAKFEEDLDT-MLPKCDIVVVNTPLTE--K 186 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-~~~---g~~~~~~l~e-ll~~aDvVi~~~p~~~--~ 186 (304)
...+++++|+|.|.+|+.++..|...|++|++++|+..+.+.. +.. +.....++++ ...++|+|+.++|... .
T Consensus 114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~ 193 (270)
T TIGR00507 114 LRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGN 193 (270)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCC
Confidence 3568899999999999999999998899999999976433222 221 2111123433 3457999999999742 1
Q ss_pred hhc-cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCc
Q 021995 187 TRG-MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 228 (304)
Q Consensus 187 t~~-~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i 228 (304)
... .++ ...++++.+++|+.-.+.. + .|.+..++..+
T Consensus 194 ~~~~~~~---~~~l~~~~~v~D~~y~p~~-T-~ll~~A~~~G~ 231 (270)
T TIGR00507 194 IDEPPVP---AEKLKEGMVVYDMVYNPGE-T-PFLAEAKSLGT 231 (270)
T ss_pred CCCCCCC---HHHcCCCCEEEEeccCCCC-C-HHHHHHHHCCC
Confidence 111 122 2446788888888765532 2 35555444433
No 156
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.99 E-value=2.4e-05 Score=73.66 Aligned_cols=89 Identities=19% Similarity=0.210 Sum_probs=66.1
Q ss_pred CCEEEEEeeChhhHHHHHHhcc--CCCeEEEEcCCCCChhHHH----hcC--ceecCCHHhhcCcCCEEEEcCCCChhhh
Q 021995 117 GKTVGTVGCGRIGKLLLQRLKP--FNCNLLYHDRVKMDPQLEK----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTR 188 (304)
Q Consensus 117 g~~vgIIG~G~IG~~lA~~l~~--~G~~V~~~dr~~~~~~~~~----~~g--~~~~~~l~ell~~aDvVi~~~p~~~~t~ 188 (304)
-+++||||+|.+|+..++.+.. ...+|.+|||+..+.+.+. +++ +..+.+.++++++||+|++|+|..+
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~--- 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK--- 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC---
Confidence 5789999999999997766543 2457999999875544322 335 3456789999999999999998642
Q ss_pred ccccHHHHhcCCCCCEEEEcCCC
Q 021995 189 GMFDKDRIAKMKKGVLIVNNARG 211 (304)
Q Consensus 189 ~~i~~~~l~~mk~g~ilVn~~rg 211 (304)
-++..+ .+|+|+.+..+|..
T Consensus 205 P~~~~~---~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 205 PVVKAD---WVSEGTHINAIGAD 224 (325)
T ss_pred cEecHH---HcCCCCEEEecCCC
Confidence 455544 45999999999853
No 157
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.98 E-value=3.6e-05 Score=70.82 Aligned_cols=127 Identities=22% Similarity=0.237 Sum_probs=87.3
Q ss_pred cccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995 111 RAYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 189 (304)
Q Consensus 111 ~~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~ 189 (304)
.+.++.||++.|||-+. +|+.++..|...|+.|+.+.... .++.+.+++||+|+.+++-. +
T Consensus 151 ~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~~----~ 212 (284)
T PRK14170 151 TGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT--------------KDLPQVAKEADILVVATGLA----K 212 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCc----C
Confidence 34578999999999876 89999999998899999886421 36889999999999999732 5
Q ss_pred cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHH
Q 021995 190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR 269 (304)
Q Consensus 190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~ 269 (304)
++..+. .|+|+++||+|-..+. +|++.| ||-...- .+ .--.+||--+|--.=+...
T Consensus 213 ~i~~~~---vk~GavVIDvGin~~~----------~gkl~G---Dvdfe~~-------~~-~a~~iTPVPGGVGpvT~a~ 268 (284)
T PRK14170 213 FVKKDY---IKPGAIVIDVGMDRDE----------NNKLCG---DVDFDDV-------VE-EAGFITPVPGGVGPMTITM 268 (284)
T ss_pred ccCHHH---cCCCCEEEEccCcccC----------CCCeec---ccchHHH-------Hh-hccEecCCCCChHHHHHHH
Confidence 677665 5899999999965531 344443 5532111 00 1246788777765555544
Q ss_pred HHHHHHHHHH
Q 021995 270 YAAGVKDMLD 279 (304)
Q Consensus 270 ~~~~~~~~l~ 279 (304)
+.+.+.+..+
T Consensus 269 L~~N~~~a~~ 278 (284)
T PRK14170 269 LLANTLKAAK 278 (284)
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 158
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.98 E-value=0.00015 Score=71.61 Aligned_cols=137 Identities=13% Similarity=0.126 Sum_probs=86.5
Q ss_pred CEEEEEeeChhhHHHHHHhccC--CCeEEEEcCCCCChhHHHh-----------------cC--ceecCCHHhhcCcCCE
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEKE-----------------TG--AKFEEDLDTMLPKCDI 176 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~--G~~V~~~dr~~~~~~~~~~-----------------~g--~~~~~~l~ell~~aDv 176 (304)
++|+|||+|.+|..+|..|... |++|+++|.++.+.+...+ .+ ....++.++.+++||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 5899999999999999999865 6889999986533222110 01 2334566778899999
Q ss_pred EEEcCCCChh-----------hhcc--ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEee-cCCCCCCC
Q 021995 177 VVVNTPLTEK-----------TRGM--FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD-VWNPQPAP 242 (304)
Q Consensus 177 Vi~~~p~~~~-----------t~~~--i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lD-V~~~ep~~ 242 (304)
+++|+|.... ...+ .-++.-+.++++.++|.-|.-++=-.+.+...|.+.. .|.-.. +|.+|-+.
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl~ 160 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFLA 160 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCccC
Confidence 9999863221 1111 1234556679999999988866666667777766521 110001 25566554
Q ss_pred CC---CCccCCCCeEE
Q 021995 243 KD---HPWRYMPNQAM 255 (304)
Q Consensus 243 ~~---~~l~~~~nv~l 255 (304)
+. +.+...|.+++
T Consensus 161 ~G~a~~d~~~p~riVi 176 (473)
T PLN02353 161 EGTAIEDLFKPDRVLI 176 (473)
T ss_pred CCCcccccCCCCEEEE
Confidence 43 34555666654
No 159
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.96 E-value=1.7e-05 Score=68.93 Aligned_cols=97 Identities=15% Similarity=0.083 Sum_probs=64.0
Q ss_pred cccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-c----Cc--ee--c---CCHHhhcCcCCEEEE
Q 021995 113 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-T----GA--KF--E---EDLDTMLPKCDIVVV 179 (304)
Q Consensus 113 ~~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-~----g~--~~--~---~~l~ell~~aDvVi~ 179 (304)
..+.++++.|+|. |.+|+.+++.|...|++|.+++|+..+.+...+ . +. .. . +++.+.++++|+|+.
T Consensus 24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 3578999999995 999999999999889999999987533222211 1 11 11 1 233467889999999
Q ss_pred cCCCChhhhccccHHHHhcCCCCCEEEEcCCCch
Q 021995 180 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI 213 (304)
Q Consensus 180 ~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~ 213 (304)
+.|....+ .. ..-...+++.+++|+.+.+.
T Consensus 104 at~~g~~~--~~--~~~~~~~~~~vv~D~~~~~~ 133 (194)
T cd01078 104 AGAAGVEL--LE--KLAWAPKPLAVAADVNAVPP 133 (194)
T ss_pred CCCCCcee--ch--hhhcccCceeEEEEccCCCC
Confidence 88865431 11 11112445778888776553
No 160
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.95 E-value=2.1e-05 Score=75.82 Aligned_cols=96 Identities=25% Similarity=0.396 Sum_probs=70.9
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCC-hhHHHhcCcee--cCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD-PQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG 189 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~-~~~~~~~g~~~--~~~l~ell~~aDvVi~~~p~~~~t~~ 189 (304)
+|.++++.|||.|.||..+|+.|...|. +|++.+|+..+ .+.++++|+.+ .+++.+.+.++|+|++++... ..
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~---~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAP---HP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCC---cc
Confidence 4889999999999999999999999995 58899998744 34566777543 456677899999999987532 34
Q ss_pred cccHHHHhcC---CCCCEEEEcCCCc
Q 021995 190 MFDKDRIAKM---KKGVLIVNNARGA 212 (304)
Q Consensus 190 ~i~~~~l~~m---k~g~ilVn~~rg~ 212 (304)
++..+.+... ++.-++||++-+.
T Consensus 252 ii~~~~ve~a~~~r~~~livDiavPR 277 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIAVPR 277 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEecCCC
Confidence 5655555433 1225788887443
No 161
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.92 E-value=0.00016 Score=67.00 Aligned_cols=135 Identities=20% Similarity=0.218 Sum_probs=90.4
Q ss_pred cccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995 111 RAYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 189 (304)
Q Consensus 111 ~~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~ 189 (304)
.+.++.||++.|||-+. +|+.++..|...|+.|+.+... ..++++.+++||+|+.++.- .+
T Consensus 161 ~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk----~~ 222 (299)
T PLN02516 161 SGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQ----AM 222 (299)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCC----cC
Confidence 35579999999999876 7999999999889999988642 13688999999999999863 26
Q ss_pred cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcC-CceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHH
Q 021995 190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG-HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQL 268 (304)
Q Consensus 190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g-~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~ 268 (304)
++..+. +|+|+++||+|-..+-+. ...+| + ..-||-..+- ...--.+||--+|--.-+..
T Consensus 223 ~i~~~~---vk~gavVIDvGin~~~~~-----~~~~g~k---l~GDvd~e~v--------~~~a~~iTPVPGGVGp~T~a 283 (299)
T PLN02516 223 MIKGDW---IKPGAAVIDVGTNAVSDP-----SKKSGYR---LVGDVDFAEV--------SKVAGWITPVPGGVGPMTVA 283 (299)
T ss_pred ccCHHH---cCCCCEEEEeeccccCcc-----cccCCCc---eEcCcChHHh--------hhhceEecCCCCCchHHHHH
Confidence 777665 589999999985442111 11112 2 3345532111 11123589987877665555
Q ss_pred HHHHHHHHHHHHHH
Q 021995 269 RYAAGVKDMLDRYF 282 (304)
Q Consensus 269 ~~~~~~~~~l~~~~ 282 (304)
.+...+++..++++
T Consensus 284 ~L~~N~v~a~~~~~ 297 (299)
T PLN02516 284 MLLKNTVDGAKRVF 297 (299)
T ss_pred HHHHHHHHHHHHHh
Confidence 55554544444444
No 162
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.90 E-value=4.4e-05 Score=70.23 Aligned_cols=81 Identities=19% Similarity=0.329 Sum_probs=66.5
Q ss_pred cccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995 111 RAYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 189 (304)
Q Consensus 111 ~~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~ 189 (304)
.+.++.||++.|||-+. +|+.++..|...|+.|+.++... .++.+..++||+|+.+++- .+
T Consensus 153 y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T--------------~~l~~~~~~ADIvIsAvGk----~~ 214 (284)
T PRK14177 153 YGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT--------------QNLPSIVRQADIIVGAVGK----PE 214 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEeCCC----cC
Confidence 34578999999999765 89999999999999999887522 3688899999999999973 35
Q ss_pred cccHHHHhcCCCCCEEEEcCCCc
Q 021995 190 MFDKDRIAKMKKGVLIVNNARGA 212 (304)
Q Consensus 190 ~i~~~~l~~mk~g~ilVn~~rg~ 212 (304)
++..+. .|+|+++||+|-..
T Consensus 215 ~i~~~~---ik~gavVIDvGin~ 234 (284)
T PRK14177 215 FIKADW---ISEGAVLLDAGYNP 234 (284)
T ss_pred ccCHHH---cCCCCEEEEecCcc
Confidence 677665 58999999998543
No 163
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.89 E-value=4.5e-05 Score=70.06 Aligned_cols=80 Identities=25% Similarity=0.364 Sum_probs=65.9
Q ss_pred ccccCCCEEEEEeeC-hhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 112 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G-~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
+.++.||++.|||-| .+|+.++.+|...|+.|+.+... ..++.+..++||+|+.++.- .++
T Consensus 152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~--------------T~~l~~~~~~ADIvV~AvGk----p~~ 213 (281)
T PRK14183 152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF--------------TKDLKAHTKKADIVIVGVGK----PNL 213 (281)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CcCHHHHHhhCCEEEEecCc----ccc
Confidence 457899999999998 79999999999889999877542 13678899999999999973 356
Q ss_pred ccHHHHhcCCCCCEEEEcCCCc
Q 021995 191 FDKDRIAKMKKGVLIVNNARGA 212 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg~ 212 (304)
+..+. .|+|+++||+|-..
T Consensus 214 i~~~~---vk~gavvIDvGin~ 232 (281)
T PRK14183 214 ITEDM---VKEGAIVIDIGINR 232 (281)
T ss_pred cCHHH---cCCCcEEEEeeccc
Confidence 77665 48999999999544
No 164
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.88 E-value=3.2e-05 Score=72.22 Aligned_cols=101 Identities=21% Similarity=0.267 Sum_probs=72.6
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh--------------cCceecCCHHhhcCcCCEEEEcCCC
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------TGAKFEEDLDTMLPKCDIVVVNTPL 183 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~--------------~g~~~~~~l~ell~~aDvVi~~~p~ 183 (304)
++|+|||.|..|.++|+.|...|++|..|.|++.-...... .++....+++++++.||+|++.+|.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 58999999999999999999999999999985422111111 1234457899999999999999994
Q ss_pred ChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHH
Q 021995 184 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV 220 (304)
Q Consensus 184 ~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~ 220 (304)
. ..+.++ ++.-..++++..+|+++-|=-.+.-.+.
T Consensus 82 ~-~~r~v~-~~l~~~l~~~~~iv~~sKGie~~t~~l~ 116 (329)
T COG0240 82 Q-ALREVL-RQLKPLLLKDAIIVSATKGLEPETGRLL 116 (329)
T ss_pred H-HHHHHH-HHHhhhccCCCeEEEEeccccCCCcchH
Confidence 2 222222 3333456899999999988665544443
No 165
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.88 E-value=4.8e-05 Score=69.93 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=66.3
Q ss_pred ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
+.++.||++.|||-+. +|+.++..|...|+.|+.+.... .++++..++||+|+.++.- .++
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvGk----p~~ 213 (282)
T PRK14166 152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGC----VNL 213 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCC----cCc
Confidence 4578999999999866 89999999998899999887522 3688999999999999973 367
Q ss_pred ccHHHHhcCCCCCEEEEcCCCc
Q 021995 191 FDKDRIAKMKKGVLIVNNARGA 212 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg~ 212 (304)
+..+. .|+|+++||+|-..
T Consensus 214 i~~~~---vk~GavVIDvGin~ 232 (282)
T PRK14166 214 LRSDM---VKEGVIVVDVGINR 232 (282)
T ss_pred cCHHH---cCCCCEEEEecccc
Confidence 77765 58999999998443
No 166
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.88 E-value=5.1e-05 Score=69.94 Aligned_cols=130 Identities=22% Similarity=0.247 Sum_probs=87.4
Q ss_pred ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
+.++.||++.|||-+. +|+.++..|...|+.|+.+.... .++++..++||+|+.++.- .++
T Consensus 150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~~~ADIvIsAvGk----p~~ 211 (287)
T PRK14173 150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVTRRADVLVVAVGR----PHL 211 (287)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCC----cCc
Confidence 4578999999999765 89999999998999999886522 3688999999999999973 367
Q ss_pred ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHHH
Q 021995 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRY 270 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~~ 270 (304)
+..+.+ |+|+++||+|-..+.++ +|+. ...=||- .+- .. .--.+||=-+|--.-+...+
T Consensus 212 i~~~~v---k~GavVIDVGin~~~~~--------~gk~-~l~GDVd-~~v-------~~-~a~~iTPVPGGVGp~T~a~L 270 (287)
T PRK14173 212 ITPEMV---RPGAVVVDVGINRVGGN--------GGRD-ILTGDVH-PEV-------AE-VAGALTPVPGGVGPMTVAML 270 (287)
T ss_pred cCHHHc---CCCCEEEEccCccccCC--------CCce-eeecccc-HhH-------Hh-hCcEEecCCCChhHHHHHHH
Confidence 777664 89999999996654221 3330 0233554 111 11 11358887777655444444
Q ss_pred HHHHHHHHHH
Q 021995 271 AAGVKDMLDR 280 (304)
Q Consensus 271 ~~~~~~~l~~ 280 (304)
...+++..++
T Consensus 271 ~~N~~~a~~~ 280 (287)
T PRK14173 271 MANTVIAALR 280 (287)
T ss_pred HHHHHHHHHH
Confidence 4444433333
No 167
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.88 E-value=0.00017 Score=67.52 Aligned_cols=159 Identities=13% Similarity=0.154 Sum_probs=118.2
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-----cCceecCCHHhh---cCcCCEEEEcCCCChhhhc
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TGAKFEEDLDTM---LPKCDIVVVNTPLTEKTRG 189 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-----~g~~~~~~l~el---l~~aDvVi~~~p~~~~t~~ 189 (304)
..+|+||++-||+.++......|+.|.+|+|+..+.+.+.. ..+....+++++ ++.-..|++.+........
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 46899999999999999999999999999998755433221 123334577776 4567788887776666666
Q ss_pred cccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHH
Q 021995 190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR 269 (304)
Q Consensus 190 ~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~ 269 (304)
+| +++...|.+|-++||-+...--|+..-.+.|.+..|...+.-|--.|--...-| .+ +-|.+.+++..
T Consensus 87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-----Sl-----MpGg~~~Awp~ 155 (487)
T KOG2653|consen 87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-----SL-----MPGGSKEAWPH 155 (487)
T ss_pred HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC-----cc-----CCCCChHHHHH
Confidence 65 688899999999999999999999999999999999888888877764322222 11 44677888888
Q ss_pred HHHHHHHHHHHHHcCCCC
Q 021995 270 YAAGVKDMLDRYFKGEDF 287 (304)
Q Consensus 270 ~~~~~~~~l~~~~~g~~~ 287 (304)
+..++...--..-.|+|.
T Consensus 156 ik~ifq~iaakv~~~epC 173 (487)
T KOG2653|consen 156 IKDIFQKIAAKVSDGEPC 173 (487)
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 777665543333355665
No 168
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.88 E-value=5.2e-05 Score=70.23 Aligned_cols=127 Identities=20% Similarity=0.223 Sum_probs=87.3
Q ss_pred ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
+.++.||++.|||-+. +|+.++..|...|+.|+.+.... .++++.+++||+|+++++-. ++
T Consensus 153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvIsAvGkp----~~ 214 (297)
T PRK14186 153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT--------------QDLASITREADILVAAAGRP----NL 214 (297)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCc----Cc
Confidence 4578999999999865 89999999999999999886421 36889999999999999832 56
Q ss_pred ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHHH
Q 021995 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRY 270 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~~ 270 (304)
+..+. +|+|+++||+|-..+.|.. ++|++. =||-..+- .+ .--.+||--+|--.=+...+
T Consensus 215 i~~~~---ik~gavVIDvGin~~~~~~------~~gkl~---GDvd~~~v-------~~-~a~~iTPVPGGVGp~T~a~L 274 (297)
T PRK14186 215 IGAEM---VKPGAVVVDVGIHRLPSSD------GKTRLC---GDVDFEEV-------EP-VAAAITPVPGGVGPMTVTML 274 (297)
T ss_pred cCHHH---cCCCCEEEEeccccccccc------cCCcee---CCccHHHH-------Hh-hceEecCCCCCchHHHHHHH
Confidence 77665 5899999999965532211 134433 35432111 11 12468998888765555544
Q ss_pred HHHHHH
Q 021995 271 AAGVKD 276 (304)
Q Consensus 271 ~~~~~~ 276 (304)
...+++
T Consensus 275 ~~Nl~~ 280 (297)
T PRK14186 275 LVNTVL 280 (297)
T ss_pred HHHHHH
Confidence 444433
No 169
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.87 E-value=7.6e-05 Score=68.49 Aligned_cols=115 Identities=24% Similarity=0.335 Sum_probs=82.6
Q ss_pred ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
+.++.||++.|||-+. +|+.++..|...|+.|+.++... .++.+..++||+|+.+++-. ++
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T--------------~~l~~~~~~ADIvIsAvGkp----~~ 214 (278)
T PRK14172 153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT--------------KNLKEVCKKADILVVAIGRP----KF 214 (278)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCc----Cc
Confidence 4578999999999765 89999999999999999887521 36889999999999999733 57
Q ss_pred ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHH
Q 021995 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLR 269 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~ 269 (304)
+..+. .|+|+++||+|-..+ +|++. =||-..+- .+ .--.+||--+|--.=+...
T Consensus 215 i~~~~---ik~gavVIDvGin~~-----------~gkl~---GDvd~~~v-------~~-~a~~iTPVPGGVGp~T~a~ 268 (278)
T PRK14172 215 IDEEY---VKEGAIVIDVGTSSV-----------NGKIT---GDVNFDKV-------ID-KASYITPVPGGVGSLTTTL 268 (278)
T ss_pred cCHHH---cCCCcEEEEeecccc-----------CCcee---eeccHHHH-------Hh-hccEecCCCCCccHHHHHH
Confidence 77766 589999999985442 23443 36532111 01 1245899888876554443
No 170
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.86 E-value=5.7e-05 Score=69.44 Aligned_cols=79 Identities=23% Similarity=0.328 Sum_probs=65.4
Q ss_pred ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
+.++.||++.|||-+. +|+.++..|...|+.|+.+.... .++.+..++||+|+.+++- .++
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvGk----p~~ 214 (282)
T PRK14180 153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGK----PNF 214 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccCC----cCc
Confidence 4578999999999765 89999999998899999887521 3688889999999999973 356
Q ss_pred ccHHHHhcCCCCCEEEEcCCC
Q 021995 191 FDKDRIAKMKKGVLIVNNARG 211 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg 211 (304)
+..+. .|+|+++||+|-.
T Consensus 215 i~~~~---vk~gavVIDvGin 232 (282)
T PRK14180 215 ITADM---VKEGAVVIDVGIN 232 (282)
T ss_pred CCHHH---cCCCcEEEEeccc
Confidence 77655 5899999999843
No 171
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.84 E-value=6.3e-05 Score=69.53 Aligned_cols=80 Identities=21% Similarity=0.345 Sum_probs=66.5
Q ss_pred ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
+.++.||++.|||-+. +|+.++..|...|+.|+.+.... .++.+.+++||+|+.+++- .++
T Consensus 155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvGk----p~~ 216 (294)
T PRK14187 155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVGI----PNF 216 (294)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCC----cCc
Confidence 4578999999999866 89999999999999999887522 3688999999999999973 356
Q ss_pred ccHHHHhcCCCCCEEEEcCCCc
Q 021995 191 FDKDRIAKMKKGVLIVNNARGA 212 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg~ 212 (304)
+..+. .|+|+++||+|-..
T Consensus 217 i~~~~---ik~gaiVIDVGin~ 235 (294)
T PRK14187 217 VKYSW---IKKGAIVIDVGINS 235 (294)
T ss_pred cCHHH---cCCCCEEEEecccc
Confidence 77666 47999999998544
No 172
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.84 E-value=5.7e-05 Score=71.17 Aligned_cols=87 Identities=26% Similarity=0.261 Sum_probs=61.5
Q ss_pred EEEEeeChhhHHHHHHhcc-CCCeEEEEcC-CCCCh-hHHHhcCce------------------ecCCHHhhcCcCCEEE
Q 021995 120 VGTVGCGRIGKLLLQRLKP-FNCNLLYHDR-VKMDP-QLEKETGAK------------------FEEDLDTMLPKCDIVV 178 (304)
Q Consensus 120 vgIIG~G~IG~~lA~~l~~-~G~~V~~~dr-~~~~~-~~~~~~g~~------------------~~~~l~ell~~aDvVi 178 (304)
|||+|||.||+.+++.+.. -+++|++++. ++... ..+..+++. ...++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6999999999999998763 4788776543 22111 222222321 1346889999999999
Q ss_pred EcCCCChhhhccccHHHHhcCCCCCEEEEcC
Q 021995 179 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 179 ~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
.|.|. +.+..+++.+..|+.+.+|+-.-
T Consensus 81 e~Tp~---~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 81 DATPG---GIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred ECCCC---CCChhhHHHHHhCCcCEEEECCC
Confidence 99864 45678889999999888887543
No 173
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.84 E-value=5.9e-05 Score=71.31 Aligned_cols=100 Identities=29% Similarity=0.370 Sum_probs=71.4
Q ss_pred ccccCCCEEEEEee-ChhhHHHHHHhc-cCC-CeEEEEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhh
Q 021995 112 AYDLEGKTVGTVGC-GRIGKLLLQRLK-PFN-CNLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKT 187 (304)
Q Consensus 112 ~~~L~g~~vgIIG~-G~IG~~lA~~l~-~~G-~~V~~~dr~~~~~~~-~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t 187 (304)
+..+.|++|.|+|. |.||+.+++.|. ..| .+++.++|+...... ..+.+.....++++.+.++|+|+.+.....
T Consensus 150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~-- 227 (340)
T PRK14982 150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPK-- 227 (340)
T ss_pred ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCc--
Confidence 34689999999998 899999999996 456 478899987543332 223321223468899999999987764322
Q ss_pred hccccHHHHhcCCCCCEEEEcCCCchhch
Q 021995 188 RGMFDKDRIAKMKKGVLIVNNARGAIMDT 216 (304)
Q Consensus 188 ~~~i~~~~l~~mk~g~ilVn~~rg~~vd~ 216 (304)
.-+++.+. ++++.++||+++..=||.
T Consensus 228 ~~~I~~~~---l~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 228 GVEIDPET---LKKPCLMIDGGYPKNLDT 253 (340)
T ss_pred CCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence 12467664 489999999998876654
No 174
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.83 E-value=0.00015 Score=66.28 Aligned_cols=119 Identities=26% Similarity=0.302 Sum_probs=86.2
Q ss_pred ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
+.+|+|+++.|||-++ +|+.++..|...++.|+++.... .++.+..++||+|+.++-. .++
T Consensus 151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG~----p~~ 212 (283)
T COG0190 151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVGK----PHF 212 (283)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecCC----ccc
Confidence 4578999999999988 69999999999999999987632 3788999999999999863 256
Q ss_pred ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHHH
Q 021995 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRY 270 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~~ 270 (304)
+..+ ..|+|+++||++--.+-+ +++. -||-..+. ....-.+||--||--+-+...+
T Consensus 213 i~~d---~vk~gavVIDVGinrv~~----------~kl~---GDVdf~~v--------~~~a~~iTPVPGGVGPmTvamL 268 (283)
T COG0190 213 IKAD---MVKPGAVVIDVGINRVND----------GKLV---GDVDFDSV--------KEKASAITPVPGGVGPMTVAML 268 (283)
T ss_pred cccc---cccCCCEEEecCCccccC----------CceE---eeccHHHH--------HHhhcccCCCCCccCHHHHHHH
Confidence 6544 468999999999655433 4443 36644331 1123467888888766555544
Q ss_pred HH
Q 021995 271 AA 272 (304)
Q Consensus 271 ~~ 272 (304)
..
T Consensus 269 l~ 270 (283)
T COG0190 269 LE 270 (283)
T ss_pred HH
Confidence 43
No 175
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.83 E-value=4.2e-05 Score=59.82 Aligned_cols=87 Identities=18% Similarity=0.199 Sum_probs=59.1
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCce-ecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 192 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~-~~~~l~ell~~aDvVi~~~p~~~~t~~~i~ 192 (304)
.++|++|.|||.|.+|..=++.|...|++|+++++.. +..+ ..++ ....+++.+.++|+|+.+.+.. -++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~-~~i~~~~~~~~~~l~~~~lV~~at~d~-----~~n 74 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSE-GLIQLIRREFEEDLDGADLVFAATDDP-----ELN 74 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHH-TSCEEEESS-GGGCTTESEEEE-SS-H-----HHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhh-hHHHHHhhhHHHHHhhheEEEecCCCH-----HHH
Confidence 5899999999999999999999999999999999864 1111 1111 1234567788999998887642 234
Q ss_pred HHHHhcCCCCCEEEEcC
Q 021995 193 KDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 193 ~~~l~~mk~g~ilVn~~ 209 (304)
+......+.-.++||+.
T Consensus 75 ~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 75 EAIYADARARGILVNVV 91 (103)
T ss_dssp HHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhhCCEEEEEC
Confidence 55555666667788875
No 176
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.83 E-value=4.9e-05 Score=71.40 Aligned_cols=93 Identities=14% Similarity=0.247 Sum_probs=63.3
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc--------------CceecCCHHhhc-CcCCEEEEcCC
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTML-PKCDIVVVNTP 182 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~--------------g~~~~~~l~ell-~~aDvVi~~~p 182 (304)
++|+|||.|.||..++..|...|.+|..|+|++...+...+. ++....++++.+ ..+|+|++++|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 369999999999999999999999999999865322222211 112335666665 58999999999
Q ss_pred CChhhhccccHHHHh-cCCCCCEEEEcCCCc
Q 021995 183 LTEKTRGMFDKDRIA-KMKKGVLIVNNARGA 212 (304)
Q Consensus 183 ~~~~t~~~i~~~~l~-~mk~g~ilVn~~rg~ 212 (304)
.. .+..++ ++..+ .++++..+|.+..|-
T Consensus 81 s~-~~~~~l-~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 81 TQ-QLRTIC-QQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred HH-HHHHHH-HHHHHhcCCCCCEEEEEEcCe
Confidence 53 233333 33334 566777777777664
No 177
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.82 E-value=4.2e-05 Score=72.54 Aligned_cols=95 Identities=17% Similarity=0.138 Sum_probs=66.5
Q ss_pred EEEEEeeChhhHHHHHHhccCC--------CeEEEEcCCCC--ChhHHHh-----------------cCceecCCHHhhc
Q 021995 119 TVGTVGCGRIGKLLLQRLKPFN--------CNLLYHDRVKM--DPQLEKE-----------------TGAKFEEDLDTML 171 (304)
Q Consensus 119 ~vgIIG~G~IG~~lA~~l~~~G--------~~V~~~dr~~~--~~~~~~~-----------------~g~~~~~~l~ell 171 (304)
+|+|||.|+.|.++|..|...| .+|..|.|... ..+.... .++...+++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999998766 99999987320 1111110 0123446899999
Q ss_pred CcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhc
Q 021995 172 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMD 215 (304)
Q Consensus 172 ~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd 215 (304)
+.||+|++++|.. ..+.+ -.+.-+.++++..+|+++-|=-.+
T Consensus 81 ~~ADiIIlAVPs~-~i~~v-l~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 81 KGADILVFVIPHQ-FLEGI-CKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred hcCCEEEEECChH-HHHHH-HHHHHhhcCCCCEEEEEeCCcccC
Confidence 9999999999943 22222 244555678899999999885443
No 178
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.82 E-value=0.00039 Score=65.02 Aligned_cols=108 Identities=17% Similarity=0.196 Sum_probs=73.5
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCce--------------ecCCHHhhcCcCCEEEEcCCC
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK--------------FEEDLDTMLPKCDIVVVNTPL 183 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~--------------~~~~l~ell~~aDvVi~~~p~ 183 (304)
++|+|||.|.||..+|..|...|++|.++.|+. .+.....|.. ...+. +....+|+|++|++.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK~ 82 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD--YEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLKT 82 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC--HHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEecC
Confidence 689999999999999999999999999999864 2323333321 11122 346789999999985
Q ss_pred ChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEE
Q 021995 184 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 231 (304)
Q Consensus 184 ~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga 231 (304)
.. +...+ +.....+++++.++...-| +-.++.|.+.+...++.++
T Consensus 83 ~~-~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g 127 (313)
T PRK06249 83 TA-NALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGG 127 (313)
T ss_pred CC-hHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence 43 22222 3444556788888887665 4456667777766666554
No 179
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.81 E-value=7.6e-05 Score=68.58 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=66.2
Q ss_pred ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
+.++.||++.|||-+. +|+.++.+|...|+.|+.+.... .++++..++||+|+.+++- .++
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T--------------~nl~~~~~~ADIvI~AvGk----~~~ 213 (282)
T PRK14182 152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT--------------ADLAGEVGRADILVAAIGK----AEL 213 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCC----cCc
Confidence 4578999999999866 89999999998899999886521 3688899999999999973 357
Q ss_pred ccHHHHhcCCCCCEEEEcCCCc
Q 021995 191 FDKDRIAKMKKGVLIVNNARGA 212 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg~ 212 (304)
+..+. .|+|+++||+|-..
T Consensus 214 i~~~~---ik~gaiVIDvGin~ 232 (282)
T PRK14182 214 VKGAW---VKEGAVVIDVGMNR 232 (282)
T ss_pred cCHHH---cCCCCEEEEeecee
Confidence 77666 58999999998554
No 180
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.81 E-value=7.1e-05 Score=69.01 Aligned_cols=123 Identities=21% Similarity=0.214 Sum_probs=84.9
Q ss_pred ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
+.++.||++.|||-+. +|+.++..|...|+.|+.+.... .++.+..++||+|+.++.- .++
T Consensus 154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T--------------~~L~~~~~~ADIvV~AvGk----p~~ 215 (288)
T PRK14171 154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT--------------HNLSSITSKADIVVAAIGS----PLK 215 (288)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCC----CCc
Confidence 3478999999999866 89999999998899999886421 3688999999999999973 257
Q ss_pred ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHHH
Q 021995 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRY 270 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~~ 270 (304)
+..+. .|+|+++||+|-..+ .+|++. =||-.+.- ...--.+||=-+|--.-+...+
T Consensus 216 i~~~~---vk~GavVIDvGin~~----------~~gkl~---GDVd~~~v--------~~~a~~iTPVPGGVGp~T~a~L 271 (288)
T PRK14171 216 LTAEY---FNPESIVIDVGINRI----------SGNKII---GDVDFENV--------KSKVKYITPVPGGIGPMTIAFL 271 (288)
T ss_pred cCHHH---cCCCCEEEEeecccc----------CCCCeE---CCccHHHH--------HhhceEeCCCCCCcHHHHHHHH
Confidence 77665 589999999984432 134443 35432111 0012467897777755555444
Q ss_pred HHHHHH
Q 021995 271 AAGVKD 276 (304)
Q Consensus 271 ~~~~~~ 276 (304)
.+.+++
T Consensus 272 ~~N~v~ 277 (288)
T PRK14171 272 LKNTVK 277 (288)
T ss_pred HHHHHH
Confidence 444443
No 181
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.80 E-value=4.6e-05 Score=72.26 Aligned_cols=93 Identities=17% Similarity=0.181 Sum_probs=65.6
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc---------------CceecCCHHhhcCcCCEEEEcCC
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET---------------GAKFEEDLDTMLPKCDIVVVNTP 182 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~---------------g~~~~~~l~ell~~aDvVi~~~p 182 (304)
++|+|||.|.+|..+|..|...| +|..|.+++...+...+. .+....++++.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 58999999999999999999888 677787754322222211 12234577788899999999999
Q ss_pred CChhhhccccHHHHhcCCCCCEEEEcCCCch
Q 021995 183 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAI 213 (304)
Q Consensus 183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~ 213 (304)
.. .++..+ ++..+.++++..+|++.-|=-
T Consensus 87 s~-~~~~vl-~~i~~~l~~~~~vIsl~kGi~ 115 (341)
T PRK12439 87 SH-GFRGVL-TELAKELRPWVPVVSLVKGLE 115 (341)
T ss_pred HH-HHHHHH-HHHHhhcCCCCEEEEEEeCCc
Confidence 32 333333 345556788888999988643
No 182
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.80 E-value=7.5e-05 Score=70.56 Aligned_cols=80 Identities=13% Similarity=0.231 Sum_probs=66.3
Q ss_pred ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
+.++.||++.|||-+. +|+.++..|...|+.|+.+.... .++++.+++||+|+.++.- .++
T Consensus 226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T--------------~nl~~~~r~ADIVIsAvGk----p~~ 287 (364)
T PLN02616 226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITREADIIISAVGQ----PNM 287 (364)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC--------------CCHHHHHhhCCEEEEcCCC----cCc
Confidence 4578999999999765 89999999999999999886421 3788999999999999973 357
Q ss_pred ccHHHHhcCCCCCEEEEcCCCc
Q 021995 191 FDKDRIAKMKKGVLIVNNARGA 212 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg~ 212 (304)
+..+. .|+|+++||+|-..
T Consensus 288 i~~d~---vK~GAvVIDVGIn~ 306 (364)
T PLN02616 288 VRGSW---IKPGAVVIDVGINP 306 (364)
T ss_pred CCHHH---cCCCCEEEeccccc
Confidence 77766 58999999999544
No 183
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.80 E-value=5.3e-05 Score=70.74 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=67.5
Q ss_pred cCCCEEEEEeeChhhHHHHHHhcc-CCC-eEEEEcCCCCChhHHH-hc---Ccee-cCCHHhhcCcCCEEEEcCCCChhh
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLEK-ET---GAKF-EEDLDTMLPKCDIVVVNTPLTEKT 187 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~-~G~-~V~~~dr~~~~~~~~~-~~---g~~~-~~~l~ell~~aDvVi~~~p~~~~t 187 (304)
...++++|||.|.+|+..++.+.. ++. +|.+|+|++.+.+.+. +. +... +.++++++.++|+|+.++|...
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~-- 200 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT-- 200 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC--
Confidence 356799999999999999998863 564 5999999865443322 22 2222 4688999999999999998653
Q ss_pred hccccHHHHhcCCCCCEEEEcCCCc
Q 021995 188 RGMFDKDRIAKMKKGVLIVNNARGA 212 (304)
Q Consensus 188 ~~~i~~~~l~~mk~g~ilVn~~rg~ 212 (304)
.++.. .+|+|+.+..+|.-.
T Consensus 201 -Pl~~~----~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 201 -PVYPE----AARAGRLVVAVGAFT 220 (304)
T ss_pred -ceeCc----cCCCCCEEEecCCCC
Confidence 45543 369999999998543
No 184
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.80 E-value=5.2e-05 Score=72.49 Aligned_cols=98 Identities=12% Similarity=0.182 Sum_probs=67.1
Q ss_pred CCEEEEEeeChhhHHHHHHhccCC-------CeEEEEcCCCCC-----hhHHHhc--------------CceecCCHHhh
Q 021995 117 GKTVGTVGCGRIGKLLLQRLKPFN-------CNLLYHDRVKMD-----PQLEKET--------------GAKFEEDLDTM 170 (304)
Q Consensus 117 g~~vgIIG~G~IG~~lA~~l~~~G-------~~V~~~dr~~~~-----~~~~~~~--------------g~~~~~~l~el 170 (304)
.++|+|||.|+.|.++|..|...| .+|..|.|+..- .+...+. ++...++++++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 468999999999999999997655 789999876531 1111110 13345788899
Q ss_pred cCcCCEEEEcCCCChhhhccccHHHHh--cCCCCCEEEEcCCCchhch
Q 021995 171 LPKCDIVVVNTPLTEKTRGMFDKDRIA--KMKKGVLIVNNARGAIMDT 216 (304)
Q Consensus 171 l~~aDvVi~~~p~~~~t~~~i~~~~l~--~mk~g~ilVn~~rg~~vd~ 216 (304)
++.+|+|++++|.. ..+.++ ++.-. .++++.++|+++-|=-.++
T Consensus 91 v~~aDiIvlAVPsq-~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~t 136 (365)
T PTZ00345 91 VEDADLLIFVIPHQ-FLESVL-SQIKENNNLKKHARAISLTKGIIVEN 136 (365)
T ss_pred HhcCCEEEEEcChH-HHHHHH-HHhccccccCCCCEEEEEeCCcccCC
Confidence 99999999999943 222222 23323 4566789999988755444
No 185
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.79 E-value=0.00014 Score=75.46 Aligned_cols=115 Identities=13% Similarity=0.143 Sum_probs=81.7
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-----------hc-------------CceecCCHHhhcCc
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------ET-------------GAKFEEDLDTMLPK 173 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~-------------g~~~~~~l~ell~~ 173 (304)
++|+|||.|.||..+|..+...|++|+.||+++...+... +. .+....+++ .+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYA-GFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcC
Confidence 6899999999999999999999999999999764322110 00 123345664 4789
Q ss_pred CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecC
Q 021995 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236 (304)
Q Consensus 174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~ 236 (304)
||+|+=++|-+.+.+.-+-.++-+.++++++|...+ +.+....|.+.+.. .-+.+++--|
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNT--Ssl~i~~la~~~~~-p~r~~g~Hff 452 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNT--STISISLLAKALKR-PENFCGMHFF 452 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcC--CCCCHHHHHhhcCC-CccEEEEecC
Confidence 999999999888888777777778889999885544 34555666666643 3333444433
No 186
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.79 E-value=8e-05 Score=70.04 Aligned_cols=129 Identities=17% Similarity=0.257 Sum_probs=85.9
Q ss_pred ccccCCCEEEEEeeCh-hhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcc
Q 021995 112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~ 190 (304)
+.++.||++.|||-+. +|+.++..|...|+.|+.+.... .++++..++||+|+.+++- .++
T Consensus 209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~~~ADIvIsAvGk----p~~ 270 (345)
T PLN02897 209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQITRKADIVIAAAGI----PNL 270 (345)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHHhhCCEEEEccCC----cCc
Confidence 4578999999999866 79999999998999999886421 3688899999999999973 357
Q ss_pred ccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHHHH
Q 021995 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRY 270 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~~~ 270 (304)
+..+. +|+|+++||+|--.+.+... ++|. ...=||..++-.+ .--.+||=-+|--.-+...+
T Consensus 271 v~~d~---vk~GavVIDVGin~~~~~~~-----~~g~--klvGDVdfe~v~~--------~as~iTPVPGGVGpmTvamL 332 (345)
T PLN02897 271 VRGSW---LKPGAVVIDVGTTPVEDSSC-----EFGY--RLVGDVCYEEALG--------VASAITPVPGGVGPMTITML 332 (345)
T ss_pred cCHHH---cCCCCEEEEccccccccccc-----cCCC--eeEecccHHHHHh--------hccccCCCCCchhHHHHHHH
Confidence 77665 58999999999544211100 0130 2344665333211 12357887777655544444
Q ss_pred HHHHHH
Q 021995 271 AAGVKD 276 (304)
Q Consensus 271 ~~~~~~ 276 (304)
...+++
T Consensus 333 m~N~~~ 338 (345)
T PLN02897 333 LCNTLD 338 (345)
T ss_pred HHHHHH
Confidence 443333
No 187
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.78 E-value=9.6e-05 Score=68.11 Aligned_cols=80 Identities=21% Similarity=0.331 Sum_probs=65.5
Q ss_pred ccccCCCEEEEEeeCh-hhHHHHHHhccC----CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 021995 112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK 186 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~----G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~ 186 (304)
+.++.||++.|||-+. +|+.++..|... ++.|+.+.... .++++.+++||+|+.+++-.
T Consensus 148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T--------------~~l~~~~~~ADIvV~AvG~p-- 211 (287)
T PRK14181 148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS--------------ENLTEILKTADIIIAAIGVP-- 211 (287)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCc--
Confidence 4578999999999866 899999999877 78998876421 36889999999999999732
Q ss_pred hhccccHHHHhcCCCCCEEEEcCCCc
Q 021995 187 TRGMFDKDRIAKMKKGVLIVNNARGA 212 (304)
Q Consensus 187 t~~~i~~~~l~~mk~g~ilVn~~rg~ 212 (304)
+++..+. +|+|+++||+|-..
T Consensus 212 --~~i~~~~---ik~GavVIDvGin~ 232 (287)
T PRK14181 212 --LFIKEEM---IAEKAVIVDVGTSR 232 (287)
T ss_pred --CccCHHH---cCCCCEEEEecccc
Confidence 5777666 58999999999554
No 188
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.77 E-value=7.8e-05 Score=65.84 Aligned_cols=96 Identities=27% Similarity=0.451 Sum_probs=67.9
Q ss_pred CEEEEEeeChhhHHHHHHhcc--CCCe-EEEEcCCCCChh-HHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995 118 KTVGTVGCGRIGKLLLQRLKP--FNCN-LLYHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 193 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~--~G~~-V~~~dr~~~~~~-~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~ 193 (304)
.+|||||+|.||+.+.+.+.. ..++ +.+||++..+.. ..+..+....++++|++++.|+++=|.... . +-+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~-A----v~e 75 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPE-A----VRE 75 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHH-H----HHH
Confidence 379999999999999999984 2455 779999764433 333455555578999999999998877522 1 222
Q ss_pred HHHhcCCCCCEEEEcCCCchhchHH
Q 021995 194 DRIAKMKKGVLIVNNARGAIMDTQA 218 (304)
Q Consensus 194 ~~l~~mk~g~ilVn~~rg~~vd~~a 218 (304)
-..+.|+.|.=+|-+|-|.+.|+.-
T Consensus 76 ~~~~~L~~g~d~iV~SVGALad~~l 100 (255)
T COG1712 76 YVPKILKAGIDVIVMSVGALADEGL 100 (255)
T ss_pred HhHHHHhcCCCEEEEechhccChHH
Confidence 2344567777677778888886654
No 189
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.75 E-value=0.00011 Score=67.57 Aligned_cols=118 Identities=20% Similarity=0.305 Sum_probs=83.9
Q ss_pred ccccCCCEEEEEeeCh-hhHHHHHHhcc--CCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhh
Q 021995 112 AYDLEGKTVGTVGCGR-IGKLLLQRLKP--FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR 188 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~--~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~ 188 (304)
+.++.||++.|||-+. +|+.++..|.. .++.|+.+... ..++.+.+++||+|+.++.-.
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGkp---- 214 (284)
T PRK14193 153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGVA---- 214 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCCc----
Confidence 4578999999999755 89999999987 78999988652 136889999999999999733
Q ss_pred ccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHHH
Q 021995 189 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQL 268 (304)
Q Consensus 189 ~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~~ 268 (304)
+++..+. +|+|+++||+|...+ .+|++. =||- .+- .+. --.+||--+|--.=+..
T Consensus 215 ~~i~~~~---ik~GavVIDvGin~~----------~~gkl~---GDvd-~~v-------~~~-a~~iTPVPGGVGp~T~a 269 (284)
T PRK14193 215 HLVTADM---VKPGAAVLDVGVSRA----------GDGKLV---GDVH-PDV-------WEV-AGAVSPNPGGVGPMTRA 269 (284)
T ss_pred CccCHHH---cCCCCEEEEcccccc----------CCCcEE---eecC-HhH-------Hhh-CCEEeCCCCChhHHHHH
Confidence 5777666 589999999996553 234443 3654 221 111 13689988886555444
Q ss_pred HHHH
Q 021995 269 RYAA 272 (304)
Q Consensus 269 ~~~~ 272 (304)
.+..
T Consensus 270 ~L~~ 273 (284)
T PRK14193 270 FLLT 273 (284)
T ss_pred HHHH
Confidence 4333
No 190
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.74 E-value=0.00034 Score=62.67 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=70.6
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEE-cCC-------CCChhHHH----hcC-------ceecCCHHhh-cC
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DRV-------KMDPQLEK----ETG-------AKFEEDLDTM-LP 172 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~-dr~-------~~~~~~~~----~~g-------~~~~~~l~el-l~ 172 (304)
.++.|++|.|.|+|++|+.+++.|..+|++|+++ |.+ ....+... +.| .... +.+++ -.
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~ 105 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLEL 105 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceee
Confidence 3689999999999999999999999999998844 431 11222211 122 1112 22222 23
Q ss_pred cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995 173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 229 (304)
Q Consensus 173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ 229 (304)
+||+++-|.+. +.++.+...+++ =.+++-.+.+++ . ....+.|.++.+.
T Consensus 106 ~~Dvlip~a~~-----~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~ 154 (227)
T cd01076 106 DCDILIPAALE-----NQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVL 154 (227)
T ss_pred cccEEEecCcc-----CccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCE
Confidence 68999988853 467788888887 334444445555 4 6666888888776
No 191
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.74 E-value=9.9e-05 Score=68.03 Aligned_cols=79 Identities=22% Similarity=0.260 Sum_probs=65.3
Q ss_pred ccccCCCEEEEEeeCh-hhHHHHHHhcc----CCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 021995 112 AYDLEGKTVGTVGCGR-IGKLLLQRLKP----FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK 186 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~----~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~ 186 (304)
+.++.||++.|||-+. +|+.++..|.. .++.|+.+.... .++.+.+++||+|+.+++
T Consensus 152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG---- 213 (286)
T PRK14184 152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIG---- 213 (286)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecC----
Confidence 4578999999999866 89999999987 789998876422 368899999999999996
Q ss_pred hhccccHHHHhcCCCCCEEEEcCCC
Q 021995 187 TRGMFDKDRIAKMKKGVLIVNNARG 211 (304)
Q Consensus 187 t~~~i~~~~l~~mk~g~ilVn~~rg 211 (304)
..+++.++.+ |+|+++||+|-.
T Consensus 214 ~p~li~~~~v---k~GavVIDVGi~ 235 (286)
T PRK14184 214 RPRFVTADMV---KPGAVVVDVGIN 235 (286)
T ss_pred CCCcCCHHHc---CCCCEEEEeeee
Confidence 3467877766 999999999843
No 192
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.74 E-value=0.0001 Score=69.49 Aligned_cols=89 Identities=21% Similarity=0.185 Sum_probs=66.0
Q ss_pred CCCEEEEEeeChhhHHHHHHhc-cCCC-eEEEEcCCCCChhHHH-----hcCc--eecCCHHhhcCcCCEEEEcCCCChh
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDPQLEK-----ETGA--KFEEDLDTMLPKCDIVVVNTPLTEK 186 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~-~~G~-~V~~~dr~~~~~~~~~-----~~g~--~~~~~l~ell~~aDvVi~~~p~~~~ 186 (304)
..++++|||.|.+|+..++.+. ..++ +|.+|+|++.+.+.+. ..+. ..+++++++++++|+|++|+|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 4679999999999999887764 4565 4889999875443322 2243 34678899999999999999865
Q ss_pred hhccccHHHHhcCCCCCEEEEcCCC
Q 021995 187 TRGMFDKDRIAKMKKGVLIVNNARG 211 (304)
Q Consensus 187 t~~~i~~~~l~~mk~g~ilVn~~rg 211 (304)
..++. ..+|+|+.++.+|.-
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGSF 223 (325)
T ss_pred -CcchH----HhcCCCcEEEecCCC
Confidence 23443 567999999999753
No 193
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.74 E-value=0.00011 Score=67.89 Aligned_cols=71 Identities=24% Similarity=0.221 Sum_probs=53.3
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHH-hcC-------ceecCCHHhhcCcCCEEEEcCCCC
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEK-ETG-------AKFEEDLDTMLPKCDIVVVNTPLT 184 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~-~~g-------~~~~~~l~ell~~aDvVi~~~p~~ 184 (304)
.+.++++.|+|.|.+|++++..|...|+ +|+++||+..+.+... .++ +...+++.+.++++|+|+.++|..
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 5788999999999999999999999998 6999999864433222 211 112234556778899999999864
No 194
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.74 E-value=0.00051 Score=62.40 Aligned_cols=129 Identities=13% Similarity=0.159 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCCeEE-EEc----
Q 021995 73 VVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHD---- 147 (304)
Q Consensus 73 ~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~-~~d---- 147 (304)
.++++--++..+..++++. +.++.|+||.|.|||++|+.+|+.|..+|++|+ +.|
T Consensus 14 ~~aTg~Gv~~~~~~~~~~~--------------------~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~ 73 (254)
T cd05313 14 PEATGYGLVYFVEEMLKDR--------------------NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGY 73 (254)
T ss_pred CchhHHHHHHHHHHHHHhc--------------------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCce
Confidence 4556666666666665532 346899999999999999999999999999988 434
Q ss_pred ---CCCCChhHH------H-hc------------CceecCCHHhh-cCcCCEEEEcCCCChhhhccccHHHHhcCC--CC
Q 021995 148 ---RVKMDPQLE------K-ET------------GAKFEEDLDTM-LPKCDIVVVNTPLTEKTRGMFDKDRIAKMK--KG 202 (304)
Q Consensus 148 ---r~~~~~~~~------~-~~------------g~~~~~~l~el-l~~aDvVi~~~p~~~~t~~~i~~~~l~~mk--~g 202 (304)
+.....+.. + .. +.+.. +.+++ -..||+++-|. +.+.|+.+..+.++ +=
T Consensus 74 i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~a 147 (254)
T cd05313 74 VYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-EGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGC 147 (254)
T ss_pred EECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-CCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCC
Confidence 222211111 0 11 12322 23333 34699998875 56788888888884 33
Q ss_pred CEEEEcCCCchhchHHHHHHHHcCCce
Q 021995 203 VLIVNNARGAIMDTQAVVDACSSGHIA 229 (304)
Q Consensus 203 ~ilVn~~rg~~vd~~aL~~aL~~g~i~ 229 (304)
.+++-.+.+++-+ +-.+.|.++.+.
T Consensus 148 k~I~EgAN~p~t~--~a~~~L~~rGI~ 172 (254)
T cd05313 148 KYVAEGANMPCTA--EAIEVFRQAGVL 172 (254)
T ss_pred EEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 4566666677643 455777777776
No 195
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=97.73 E-value=0.00021 Score=66.50 Aligned_cols=116 Identities=15% Similarity=0.122 Sum_probs=80.0
Q ss_pred CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-----------hcC-------------ceecCCHHhhcC
Q 021995 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------ETG-------------AKFEEDLDTMLP 172 (304)
Q Consensus 117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~l~ell~ 172 (304)
-++|||||.|.||+.+|..+...|++|..+|+++...+... +.| +....++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 46999999999999999999887799999999743211111 111 11222333 688
Q ss_pred cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecC
Q 021995 173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236 (304)
Q Consensus 173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~ 236 (304)
+||+|+=++|-+.+.++-+-++.=+..+++++|=.- -+.+.-.++.+++ ++.-+..++=-|
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASN--TSsl~it~ia~~~-~rper~iG~HFf 142 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASN--TSSLSITELAEAL-KRPERFIGLHFF 142 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeec--cCCCCHHHHHHHh-CCchhEEEEecc
Confidence 999999999988887776666776778899988433 3345566777777 444444555433
No 196
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.73 E-value=0.00038 Score=67.94 Aligned_cols=111 Identities=17% Similarity=0.267 Sum_probs=71.1
Q ss_pred ccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcC--------CCCChhHH------------------HhcCceecC
Q 021995 112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR--------VKMDPQLE------------------KETGAKFEE 165 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr--------~~~~~~~~------------------~~~g~~~~~ 165 (304)
+.+|.|+||.|.|+|++|+..|+.|..+|++|++++. .....+.. ...++...
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i- 301 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV- 301 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-
Confidence 4579999999999999999999999999999987433 11111110 01123332
Q ss_pred CHHhhc-CcCCEEEEcCCCChhhhccccHHHHhcCCC-CCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995 166 DLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKK-GVLIVNNARGAIMDTQAVVDACSSGHIA 229 (304)
Q Consensus 166 ~l~ell-~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~-g~ilVn~~rg~~vd~~aL~~aL~~g~i~ 229 (304)
+.++++ ..||+++-|. +.+.|+.+..+.++. ++.+|--+--.+...++. +.|.++.|.
T Consensus 302 ~~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~-~~L~~rgI~ 361 (444)
T PRK14031 302 EGARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANMPSTPEAI-KVFQDAKIL 361 (444)
T ss_pred CCcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCCCCCHHHH-HHHHHCCcE
Confidence 233432 4699998776 457888888888864 555555554445555554 445555544
No 197
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.73 E-value=0.00013 Score=66.49 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=67.9
Q ss_pred CEEEEEeeChhhHHHHHHhccC---CCeEE-EEcCCCCChhHHHhcCceecCCHHhh-cCcCCEEEEcCCCChhhhcccc
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPF---NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTM-LPKCDIVVVNTPLTEKTRGMFD 192 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~---G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~el-l~~aDvVi~~~p~~~~t~~~i~ 192 (304)
.+|||||||.||+.+++.+..- ++++. ++++.+...+.... .+..+.+++++ ....|+|+=|.+.. .+-
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-~~~~~~~l~~ll~~~~DlVVE~A~~~-----av~ 76 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-RVALLDGLPGLLAWRPDLVVEAAGQQ-----AIA 76 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-cCcccCCHHHHhhcCCCEEEECCCHH-----HHH
Confidence 5899999999999999988642 36644 56665422222222 25567789997 58899999887632 222
Q ss_pred HHHHhcCCCCCEEEEcCCCchhc---hHHHHHHHHcC
Q 021995 193 KDRIAKMKKGVLIVNNARGAIMD---TQAVVDACSSG 226 (304)
Q Consensus 193 ~~~l~~mk~g~ilVn~~rg~~vd---~~aL~~aL~~g 226 (304)
+-..+-|+.|.-++=+|-|.+-| .+.|.++.+++
T Consensus 77 e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~ 113 (267)
T PRK13301 77 EHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAG 113 (267)
T ss_pred HHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhC
Confidence 22334456777788888888887 44455555443
No 198
>PLN02477 glutamate dehydrogenase
Probab=97.72 E-value=0.0021 Score=62.32 Aligned_cols=110 Identities=17% Similarity=0.284 Sum_probs=74.1
Q ss_pred ccccCCCEEEEEeeChhhHHHHHHhccCCCeEE-EEcCC-------CCChhHHHh----c-------CceecCCHHhhcC
Q 021995 112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLEKE----T-------GAKFEEDLDTMLP 172 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~-~~dr~-------~~~~~~~~~----~-------g~~~~~~l~ell~ 172 (304)
+.+|.|++|.|.|||++|+.+|+.|...|++|+ +.|.+ ....+...+ . +.+..+.-+-+..
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~ 280 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE 280 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence 347899999999999999999999999999988 44443 222222111 0 1122222222345
Q ss_pred cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995 173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 229 (304)
Q Consensus 173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ 229 (304)
.||+++-|. ..+.|+++...+++ -.+++-.+.+++ +.+-.+.|.++.|.
T Consensus 281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~--t~ea~~~L~~rGI~ 329 (410)
T PLN02477 281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT--DPEADEILRKKGVV 329 (410)
T ss_pred cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC--CHHHHHHHHHCCcE
Confidence 799998776 34678888888775 456677777777 44456888888776
No 199
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.71 E-value=0.00039 Score=61.81 Aligned_cols=109 Identities=20% Similarity=0.193 Sum_probs=69.7
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCCeEE-EEcCCC----------CChhHHHhc-CceecC-----CHHhhc-CcC
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRVK----------MDPQLEKET-GAKFEE-----DLDTML-PKC 174 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~-~~dr~~----------~~~~~~~~~-g~~~~~-----~l~ell-~~a 174 (304)
.+|.|++|.|.|||++|+.+|+.|...|.+|+ +.|.+. ...+..++. ++..+. +-++++ .+|
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV 98 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence 36899999999999999999999999999755 556544 111111122 121111 112322 379
Q ss_pred CEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995 175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 229 (304)
Q Consensus 175 DvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ 229 (304)
|+++-|.+. +.++.+....++ =.+++-.+.+++-+ .-.+.|.+..+.
T Consensus 99 DVlipaA~~-----~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~ 145 (217)
T cd05211 99 DIFAPCALG-----NVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV 145 (217)
T ss_pred cEEeecccc-----CccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 999988864 477777777776 34455566666654 445666666655
No 200
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.70 E-value=0.00014 Score=68.49 Aligned_cols=88 Identities=17% Similarity=0.253 Sum_probs=65.8
Q ss_pred CCCEEEEEeeChhhHHHHHHhc-cCCC-eEEEEcCCCCChhHHH-h----cCc--eecCCHHhhcCcCCEEEEcCCCChh
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDPQLEK-E----TGA--KFEEDLDTMLPKCDIVVVNTPLTEK 186 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~-~~G~-~V~~~dr~~~~~~~~~-~----~g~--~~~~~l~ell~~aDvVi~~~p~~~~ 186 (304)
..++++|||.|.+|+..++.+. ..+. +|.+|+|++.+.+.+. + .+. ..++++++.+++||+|+.++|..+
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~- 206 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET- 206 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC-
Confidence 4579999999999999999886 4674 5999999875444322 2 243 335788999999999999998643
Q ss_pred hhccccHHHHhcCCCCCEEEEcC
Q 021995 187 TRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 187 t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
.++..+. +|+|..+..++
T Consensus 207 --p~i~~~~---l~~g~~i~~vg 224 (326)
T TIGR02992 207 --PILHAEW---LEPGQHVTAMG 224 (326)
T ss_pred --cEecHHH---cCCCcEEEeeC
Confidence 4555444 68998888776
No 201
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.70 E-value=0.00015 Score=67.00 Aligned_cols=80 Identities=16% Similarity=0.299 Sum_probs=64.6
Q ss_pred ccccCCCEEEEEeeCh-hhHHHHHHhccC----CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 021995 112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK 186 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~----G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~ 186 (304)
+.++.||++.|||-+. +|+.++..|... ++.|+.+.... .++.+.+++||+|+.+++-
T Consensus 152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~~~ADIvIsAvGk--- 214 (293)
T PRK14185 152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKECLEADIIIAALGQ--- 214 (293)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHHhhCCEEEEccCC---
Confidence 4578999999999866 899999999866 68898886422 3688999999999999973
Q ss_pred hhccccHHHHhcCCCCCEEEEcCCCc
Q 021995 187 TRGMFDKDRIAKMKKGVLIVNNARGA 212 (304)
Q Consensus 187 t~~~i~~~~l~~mk~g~ilVn~~rg~ 212 (304)
.+++..+. .|+|+++||+|-..
T Consensus 215 -p~~i~~~~---vk~gavVIDvGin~ 236 (293)
T PRK14185 215 -PEFVKADM---VKEGAVVIDVGTTR 236 (293)
T ss_pred -cCccCHHH---cCCCCEEEEecCcc
Confidence 25676655 58999999998544
No 202
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.69 E-value=0.00014 Score=67.47 Aligned_cols=80 Identities=18% Similarity=0.338 Sum_probs=65.0
Q ss_pred ccccCCCEEEEEeeCh-hhHHHHHHhcc----CCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 021995 112 AYDLEGKTVGTVGCGR-IGKLLLQRLKP----FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK 186 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~----~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~ 186 (304)
+.++.||++.|||-+. +|+.++..|.. .|+.|..+.... .++++.+++||+|+.+++..
T Consensus 154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~~-- 217 (295)
T PRK14174 154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGKA-- 217 (295)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCcc--
Confidence 4578999999999865 89999999876 588888776522 36889999999999999633
Q ss_pred hhccccHHHHhcCCCCCEEEEcCCCc
Q 021995 187 TRGMFDKDRIAKMKKGVLIVNNARGA 212 (304)
Q Consensus 187 t~~~i~~~~l~~mk~g~ilVn~~rg~ 212 (304)
+++..+.+ |+|+++||+|-..
T Consensus 218 --~li~~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 218 --RFITADMV---KPGAVVIDVGINR 238 (295)
T ss_pred --CccCHHHc---CCCCEEEEeeccc
Confidence 67888876 9999999998443
No 203
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.67 E-value=0.00028 Score=73.13 Aligned_cols=115 Identities=14% Similarity=0.046 Sum_probs=80.4
Q ss_pred CEEEEEeeChhhHHHHHHhc-cCCCeEEEEcCCCCChhHHH-----------h-------------cCceecCCHHhhcC
Q 021995 118 KTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEK-----------E-------------TGAKFEEDLDTMLP 172 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~-~~G~~V~~~dr~~~~~~~~~-----------~-------------~g~~~~~~l~ell~ 172 (304)
++|+|||.|.||..+|..+. ..|++|+.||+++...+... + ..+...++++ .++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-GFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-Hhc
Confidence 58999999999999999887 57999999998753221110 0 0123445664 578
Q ss_pred cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecC
Q 021995 173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236 (304)
Q Consensus 173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~ 236 (304)
+||+|+=++|-+.+.+.-+-.++-+.++++++|...+ +.+....|.+.+.. .-+.+++--|
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnT--S~l~i~~la~~~~~-p~r~~g~Hff 444 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNT--SSLPIGQIAAAASR-PENVIGLHYF 444 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCC--CCCCHHHHHHhcCC-cccEEEEecC
Confidence 9999999999888887777777778889998886444 34555666666643 3333455534
No 204
>PRK06046 alanine dehydrogenase; Validated
Probab=97.67 E-value=0.00013 Score=68.67 Aligned_cols=87 Identities=28% Similarity=0.420 Sum_probs=64.1
Q ss_pred CCEEEEEeeChhhHHHHHHhc-cCCCe-EEEEcCCCCChhHHHh-----cC--ceecCCHHhhcCcCCEEEEcCCCChhh
Q 021995 117 GKTVGTVGCGRIGKLLLQRLK-PFNCN-LLYHDRVKMDPQLEKE-----TG--AKFEEDLDTMLPKCDIVVVNTPLTEKT 187 (304)
Q Consensus 117 g~~vgIIG~G~IG~~lA~~l~-~~G~~-V~~~dr~~~~~~~~~~-----~g--~~~~~~l~ell~~aDvVi~~~p~~~~t 187 (304)
-+++||||+|.+|+..++.+. ..+.+ |.+|||++...+.+.+ .+ +..+++++++++ +|+|++|+|...
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~-- 205 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK-- 205 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC--
Confidence 469999999999999998886 34655 7789998744333222 23 344678899887 999999998653
Q ss_pred hccccHHHHhcCCCCCEEEEcCC
Q 021995 188 RGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 188 ~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
-++..+ .+|+|+.+..+|.
T Consensus 206 -P~~~~~---~l~~g~hV~~iGs 224 (326)
T PRK06046 206 -PVVKAE---WIKEGTHINAIGA 224 (326)
T ss_pred -cEecHH---HcCCCCEEEecCC
Confidence 455554 3589999888874
No 205
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.67 E-value=0.00024 Score=65.00 Aligned_cols=107 Identities=17% Similarity=0.206 Sum_probs=65.4
Q ss_pred CEEEEEeeChhhHHHHHHhccC-CCeEE-EEcCCCCChhHHHhc--CceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKET--GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 193 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~-G~~V~-~~dr~~~~~~~~~~~--g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~ 193 (304)
.+|||||+|.||+.+++.+... ++++. ++++........... ++..+.+++++-.+.|+|+.|.|.... -+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-----~e 76 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-----KE 76 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-----HH
Confidence 4899999999999999998765 56654 444432211111222 455667888885569999999985322 12
Q ss_pred HHHhcCCCCCEEEEcCCCchhch---HHHHHHHHcCCce
Q 021995 194 DRIAKMKKGVLIVNNARGAIMDT---QAVVDACSSGHIA 229 (304)
Q Consensus 194 ~~l~~mk~g~ilVn~~rg~~vd~---~aL~~aL~~g~i~ 229 (304)
-....++.|.-++-.+-+.+.|. +.|.++.+++...
T Consensus 77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 33344556666665655554443 4455655555433
No 206
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.67 E-value=0.00017 Score=67.99 Aligned_cols=92 Identities=7% Similarity=0.094 Sum_probs=61.9
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhcccc
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 192 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~ 192 (304)
.+.|++|.|||.|.||+.+++.|...|+ +|++.+|+....+ ++-... ...++..++|+|+.+...|.....++.
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~----~~~~~~-~~~~~~~~~DvVIs~t~~Tas~~p~i~ 245 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLP----YRTVVR-EELSFQDPYDVIFFGSSESAYAFPHLS 245 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccc----hhhhhh-hhhhcccCCCEEEEcCCcCCCCCceee
Confidence 5889999999999999999999999996 5999999863211 110000 111556799999987433333334556
Q ss_pred HHHHhcCCCCCEEEEcCCC
Q 021995 193 KDRIAKMKKGVLIVNNARG 211 (304)
Q Consensus 193 ~~~l~~mk~g~ilVn~~rg 211 (304)
.+.++..++ .+|||.+=+
T Consensus 246 ~~~~~~~~~-r~~iDLAvP 263 (338)
T PRK00676 246 WESLADIPD-RIVFDFNVP 263 (338)
T ss_pred HHHHhhccC-cEEEEecCC
Confidence 666654332 488888743
No 207
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.66 E-value=0.00015 Score=71.90 Aligned_cols=72 Identities=24% Similarity=0.336 Sum_probs=52.6
Q ss_pred ccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH-HhcCceecCCHHhh--cCcCCEEEEcCCCC
Q 021995 112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAKFEEDLDTM--LPKCDIVVVNTPLT 184 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~~~l~el--l~~aDvVi~~~p~~ 184 (304)
+..+.+++++|+|.|.+|++++..|...|++|.+++|+..+.+.. ...+.... +++++ +.++|+|+.|+|..
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~-~~~~~~~l~~~DiVInatP~g 401 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAF-PLESLPELHRIDIIINCLPPS 401 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccee-chhHhcccCCCCEEEEcCCCC
Confidence 346789999999999999999999999999999999875433322 22222211 22222 57899999999965
No 208
>PRK06444 prephenate dehydrogenase; Provisional
Probab=97.65 E-value=0.00023 Score=62.39 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=47.6
Q ss_pred CEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHH
Q 021995 118 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI 196 (304)
Q Consensus 118 ~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l 196 (304)
.+++|||- |.||+.++++++..|+.|. +++||+|++|+|... + .+.+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv~~-~-----~~~i 48 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPIDA-A-----LNYI 48 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCHHH-H-----HHHH
Confidence 37999997 9999999999999999985 368999999999542 2 2334
Q ss_pred hcCCCCCEEEEcCCCch
Q 021995 197 AKMKKGVLIVNNARGAI 213 (304)
Q Consensus 197 ~~mk~g~ilVn~~rg~~ 213 (304)
+.+. .+++|++.-+.
T Consensus 49 ~~~~--~~v~Dv~SvK~ 63 (197)
T PRK06444 49 ESYD--NNFVEISSVKW 63 (197)
T ss_pred HHhC--CeEEeccccCH
Confidence 3333 47899987443
No 209
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.65 E-value=0.00019 Score=66.49 Aligned_cols=136 Identities=16% Similarity=0.186 Sum_probs=88.1
Q ss_pred cccccCCCEEEEEeeCh-hhHHHHHHhccC----CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCCh
Q 021995 111 RAYDLEGKTVGTVGCGR-IGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE 185 (304)
Q Consensus 111 ~~~~L~g~~vgIIG~G~-IG~~lA~~l~~~----G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~ 185 (304)
.+.++.||++.|||-+. +|+.++..|... ++.|+.+.... .++++.+++||+|+.++.-
T Consensus 155 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T--------------~~l~~~~~~ADIvVsAvGk-- 218 (297)
T PRK14168 155 SGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS--------------KNLARHCQRADILIVAAGV-- 218 (297)
T ss_pred hCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC--------------cCHHHHHhhCCEEEEecCC--
Confidence 35678999999999755 899999999876 78898875421 3688899999999999863
Q ss_pred hhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHH
Q 021995 186 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID 265 (304)
Q Consensus 186 ~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e 265 (304)
.+++..+. +|+|+++||+|-..+.+. ..+|+.. ..=||-..+- .. .--.+||--+|--.-
T Consensus 219 --p~~i~~~~---ik~gavVIDvGin~~~~~------~~~g~~~-~~GDVdfe~v-------~~-~a~~iTPVPGGVGp~ 278 (297)
T PRK14168 219 --PNLVKPEW---IKPGATVIDVGVNRVGTN------ESTGKAI-LSGDVDFDAV-------KE-IAGKITPVPGGVGPM 278 (297)
T ss_pred --cCccCHHH---cCCCCEEEecCCCccCcc------ccCCCcc-eeccccHHHH-------Hh-hccEecCCCCCchHH
Confidence 25677665 589999999996542211 0123200 2335432110 11 124589987777655
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021995 266 AQLRYAAGVKDMLDRYF 282 (304)
Q Consensus 266 ~~~~~~~~~~~~l~~~~ 282 (304)
+...+...+++..++|+
T Consensus 279 T~a~L~~N~~~a~~~~~ 295 (297)
T PRK14168 279 TIAMLMRNTLKSAKFHL 295 (297)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55555554544444443
No 210
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.62 E-value=0.00029 Score=73.08 Aligned_cols=115 Identities=10% Similarity=0.016 Sum_probs=81.8
Q ss_pred CEEEEEeeChhhHHHHHHhc-cCCCeEEEEcCCCCChhHHH-----------hc-------------CceecCCHHhhcC
Q 021995 118 KTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEK-----------ET-------------GAKFEEDLDTMLP 172 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~-~~G~~V~~~dr~~~~~~~~~-----------~~-------------g~~~~~~l~ell~ 172 (304)
++|+|||.|.||..+|..+. ..|++|+.+|+++...+... +. .+....++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 68999999999999999987 77999999998753222110 00 12334555 4578
Q ss_pred cCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecC
Q 021995 173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236 (304)
Q Consensus 173 ~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~ 236 (304)
+||+|+=++|-+.+.+.-+-+++=+.++++++|...+ +.+....|.+.+.. .-+.+++--|
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnT--S~l~i~~la~~~~~-p~r~ig~Hff 449 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNT--SSLPIGQIAAAAAR-PEQVIGLHYF 449 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECC--CCCCHHHHHHhcCc-ccceEEEecC
Confidence 9999999999888887777777778889999986544 44566667776643 3333455544
No 211
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.62 E-value=0.00026 Score=73.65 Aligned_cols=115 Identities=13% Similarity=0.081 Sum_probs=82.3
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-----------hc-------------CceecCCHHhhcCc
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------ET-------------GAKFEEDLDTMLPK 173 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~-------------g~~~~~~l~ell~~ 173 (304)
++|+|||.|.||..+|..+...|++|+.+|+++...+... +. .+....+++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 5899999999999999999988999999998764322110 00 123345564 5789
Q ss_pred CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEEeecC
Q 021995 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236 (304)
Q Consensus 174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~lDV~ 236 (304)
||+|+=++|-+.+.+.-+-.++=+.++++++|... .+.++..+|.+.+.. .-+.+++--|
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasN--TSsl~i~~la~~~~~-p~r~ig~Hff 474 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASN--TSALPIKDIAAVSSR-PEKVIGMHYF 474 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEc--CCCCCHHHHHhhcCC-ccceEEEecc
Confidence 99999999988888777777777888999988533 344566677776643 3334555544
No 212
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.62 E-value=0.00038 Score=72.24 Aligned_cols=104 Identities=14% Similarity=0.174 Sum_probs=77.0
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-----------hc-------------CceecCCHHhhcCc
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------ET-------------GAKFEEDLDTMLPK 173 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~-------------g~~~~~~l~ell~~ 173 (304)
++|+|||.|.||..+|..+...|++|+.+|+++...+... +. .+....++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5899999999999999999989999999998764322111 00 12333455 34789
Q ss_pred CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 224 (304)
Q Consensus 174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~ 224 (304)
||+|+=++|-+.+.+.-+-+++=+.++++++|-..+ +.++..+|...++
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnT--S~l~i~~ia~~~~ 441 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNT--STISISLLAKALK 441 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECC--CCCCHHHHHhhcC
Confidence 999999999888877777677778889999985544 4455666766664
No 213
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.62 E-value=0.0002 Score=67.53 Aligned_cols=88 Identities=17% Similarity=0.293 Sum_probs=62.9
Q ss_pred CCCEEEEEeeChhhHHHHHHhcc-CC-CeEEEEcCCCCChhHHHh-----cCc--eecCCHHhhcCcCCEEEEcCCCChh
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEKE-----TGA--KFEEDLDTMLPKCDIVVVNTPLTEK 186 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~-~G-~~V~~~dr~~~~~~~~~~-----~g~--~~~~~l~ell~~aDvVi~~~p~~~~ 186 (304)
..++++|||.|.+|+..+..+.. .+ .+|.+|+|+..+.+.+.+ .++ ..++++++++.++|+|+.++|...
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~- 209 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE- 209 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC-
Confidence 45799999999999998887763 55 469999998654443322 233 335788999999999999998643
Q ss_pred hhccccHHHHhcCCCCCEEEEcC
Q 021995 187 TRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 187 t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
.++..+. +++|..+..++
T Consensus 210 --p~i~~~~---l~~g~~v~~vg 227 (330)
T PRK08291 210 --PILKAEW---LHPGLHVTAMG 227 (330)
T ss_pred --cEecHHH---cCCCceEEeeC
Confidence 3554443 57777666644
No 214
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.61 E-value=0.00025 Score=65.75 Aligned_cols=80 Identities=23% Similarity=0.320 Sum_probs=64.1
Q ss_pred ccccCCCEEEEEeeCh-hhHHHHHHhccC----CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 021995 112 AYDLEGKTVGTVGCGR-IGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK 186 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~-IG~~lA~~l~~~----G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~ 186 (304)
+.++.||++.|||-+. +|+.++..|... ++.|+.+.... .++++..++||+|+.++.-
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~~~ADIvIsAvGk--- 214 (297)
T PRK14167 152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKTRRADIVVAAAGV--- 214 (297)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCC---
Confidence 4578999999999865 899999999765 78998875421 3688999999999998863
Q ss_pred hhccccHHHHhcCCCCCEEEEcCCCc
Q 021995 187 TRGMFDKDRIAKMKKGVLIVNNARGA 212 (304)
Q Consensus 187 t~~~i~~~~l~~mk~g~ilVn~~rg~ 212 (304)
.+++..+. +|+|+++||+|-..
T Consensus 215 -p~~i~~~~---ik~gaiVIDvGin~ 236 (297)
T PRK14167 215 -PELIDGSM---LSEGATVIDVGINR 236 (297)
T ss_pred -cCccCHHH---cCCCCEEEEccccc
Confidence 25777655 58999999999544
No 215
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.60 E-value=9e-05 Score=58.79 Aligned_cols=66 Identities=26% Similarity=0.445 Sum_probs=52.3
Q ss_pred EEEEEeeChhhHHHHHHhccC--CCeEE-EEcCCCCChh-HHHhcCceecCCHHhhcC--cCCEEEEcCCCC
Q 021995 119 TVGTVGCGRIGKLLLQRLKPF--NCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTMLP--KCDIVVVNTPLT 184 (304)
Q Consensus 119 ~vgIIG~G~IG~~lA~~l~~~--G~~V~-~~dr~~~~~~-~~~~~g~~~~~~l~ell~--~aDvVi~~~p~~ 184 (304)
+|||||+|.+|+.....+... +.++. ++|+++...+ ..+.++...+++++++++ +.|+|++++|..
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~ 73 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPS 73 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGG
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCc
Confidence 799999999999999877654 56754 7788764333 345678888889999998 799999999954
No 216
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.60 E-value=0.00038 Score=65.44 Aligned_cols=117 Identities=18% Similarity=0.277 Sum_probs=72.0
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCC-CeEEEEcCCCCChhH-HH--h-----cC----ceecCCHHhhcCcCCEEEEcC
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQL-EK--E-----TG----AKFEEDLDTMLPKCDIVVVNT 181 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~~-~~--~-----~g----~~~~~~l~ell~~aDvVi~~~ 181 (304)
+..++|+|||.|.+|..++..+...| .++..+|.+....+. +. . .+ +....+++ .+++||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 45679999999999999999888777 689999986532211 11 0 11 12234666 679999999998
Q ss_pred --CCChh-hh--------cccc--HHHHhcCCCCCEEEEcCCCchhchHHHHHHHH--cCCceEEE
Q 021995 182 --PLTEK-TR--------GMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDACS--SGHIAGYS 232 (304)
Q Consensus 182 --p~~~~-t~--------~~i~--~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~--~g~i~ga~ 232 (304)
|..+. ++ .++. .+.+....|.+++|+++...-+-...+.+.-. ..++.|.+
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 43330 00 1110 12233346888999997655444444544322 35566555
No 217
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.59 E-value=0.00067 Score=64.64 Aligned_cols=144 Identities=18% Similarity=0.278 Sum_probs=92.4
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH-------------------HhcC-ceecCCHHhhcCcCCEE
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-------------------KETG-AKFEEDLDTMLPKCDIV 177 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-------------------~~~g-~~~~~~l~ell~~aDvV 177 (304)
.+|||||+|-||-.+|-.+...|++|+++|.++..-+.. .+.| .+...+.++ ++.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cccCCEE
Confidence 799999999999999999999999999999875322111 1112 233344544 4599999
Q ss_pred EEcCCCChhhh-c------cc--cHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcC--CceEEEeec---CCCCCCCC
Q 021995 178 VVNTPLTEKTR-G------MF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG--HIAGYSGDV---WNPQPAPK 243 (304)
Q Consensus 178 i~~~p~~~~t~-~------~i--~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g--~i~ga~lDV---~~~ep~~~ 243 (304)
++|+|. |-+. + +. .+..-+.||+|.++|==|.-.+=.++.++.-|.+. .+. ..-|. |.+|-.-+
T Consensus 89 iI~VPT-Pl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P 166 (436)
T COG0677 89 IICVPT-PLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP 166 (436)
T ss_pred EEEecC-CcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC
Confidence 999983 2111 1 11 23455679999999998887777788887776653 233 22342 44554333
Q ss_pred CCCc---cCCCCeEEccCCCcCCHHHHHH
Q 021995 244 DHPW---RYMPNQAMTPHVSGTTIDAQLR 269 (304)
Q Consensus 244 ~~~l---~~~~nv~lTPHia~~t~e~~~~ 269 (304)
.+.+ .+.|.| +||.|+.+.+.
T Consensus 167 G~~~~el~~~~kV-----IgG~tp~~~e~ 190 (436)
T COG0677 167 GNVLKELVNNPKV-----IGGVTPKCAEL 190 (436)
T ss_pred CchhhhhhcCCce-----eecCCHHHHHH
Confidence 3333 344555 56667665443
No 218
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.58 E-value=0.00017 Score=63.30 Aligned_cols=96 Identities=23% Similarity=0.282 Sum_probs=68.8
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCC---CCChhH----HHhcC-------------------cee--
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV---KMDPQL----EKETG-------------------AKF-- 163 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~---~~~~~~----~~~~g-------------------~~~-- 163 (304)
..|..++|+|+|+|.+|..+|+.|...|. +++.+|++ ...... ..+.| +..
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 36889999999999999999999999999 59999987 110000 00111 111
Q ss_pred ----cCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcC
Q 021995 164 ----EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 164 ----~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
.+++++++.++|+|+.| ..+.+++..+.......++...++...+
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~g 145 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAASG 145 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEec
Confidence 02345678899999988 6788888888888888888766666433
No 219
>PRK14030 glutamate dehydrogenase; Provisional
Probab=97.57 E-value=0.001 Score=65.00 Aligned_cols=110 Identities=16% Similarity=0.194 Sum_probs=74.3
Q ss_pred ccccCCCEEEEEeeChhhHHHHHHhccCCCeEEE--------EcCCCCChhHH---H---------------hc-Cceec
Q 021995 112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLY--------HDRVKMDPQLE---K---------------ET-GAKFE 164 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~--------~dr~~~~~~~~---~---------------~~-g~~~~ 164 (304)
+.+|.|+||.|-|+|++|+.+|+.|..+|++|++ ||++....+.. . .+ +.+..
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i 302 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF 302 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence 4478999999999999999999999999999998 78765443321 0 11 33333
Q ss_pred CCHHhhc-CcCCEEEEcCCCChhhhccccHHHHhcCC-CCC-EEEEcCCCchhchHHHHHHHHcCCce
Q 021995 165 EDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMK-KGV-LIVNNARGAIMDTQAVVDACSSGHIA 229 (304)
Q Consensus 165 ~~l~ell-~~aDvVi~~~p~~~~t~~~i~~~~l~~mk-~g~-ilVn~~rg~~vd~~aL~~aL~~g~i~ 229 (304)
+.++++ ..||+++-|. +.+.|+.+..+.+. .++ +++-.+.+ ++..+ -.+.|.++.|.
T Consensus 303 -~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~e-A~~iL~~rGI~ 362 (445)
T PRK14030 303 -AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAE-AIDKFIAAKQL 362 (445)
T ss_pred -CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHH-HHHHHHHCCCE
Confidence 223333 4599988776 56788888777773 334 45555556 55544 34667777666
No 220
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.55 E-value=0.00026 Score=56.76 Aligned_cols=89 Identities=18% Similarity=0.193 Sum_probs=54.2
Q ss_pred EEEEEe-eChhhHHHHHHhccC-CCeEEEE-cCCCCChhHHH-hcC-ce-e-cCCH--Hhh-cCcCCEEEEcCCCChhhh
Q 021995 119 TVGTVG-CGRIGKLLLQRLKPF-NCNLLYH-DRVKMDPQLEK-ETG-AK-F-EEDL--DTM-LPKCDIVVVNTPLTEKTR 188 (304)
Q Consensus 119 ~vgIIG-~G~IG~~lA~~l~~~-G~~V~~~-dr~~~~~~~~~-~~g-~~-~-~~~l--~el-l~~aDvVi~~~p~~~~t~ 188 (304)
++||+| .|.+|+.+++.+... ++++.++ +++....+... ..+ .. . ..+. +++ ..++|+|++|+|......
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~ 80 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE 80 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence 589999 599999999988874 7887655 44321111122 111 10 0 0111 111 258999999999664332
Q ss_pred ccccHHHHhcCCCCCEEEEcC
Q 021995 189 GMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 189 ~~i~~~~l~~mk~g~ilVn~~ 209 (304)
.+ ......+++|.++|+++
T Consensus 81 -~~-~~~~~~~~~g~~viD~s 99 (122)
T smart00859 81 -IA-PLLPKAAEAGVKVIDLS 99 (122)
T ss_pred -HH-HHHHhhhcCCCEEEECC
Confidence 22 13345679999999997
No 221
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.55 E-value=0.00022 Score=68.44 Aligned_cols=88 Identities=22% Similarity=0.229 Sum_probs=63.5
Q ss_pred CEEEEEeeChhhHHHHHHhccCC-CeEEEEcCCCCChhHHHhcC----------ceecCCHHhhcCcCCEEEEcCCCChh
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETG----------AKFEEDLDTMLPKCDIVVVNTPLTEK 186 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~~~~~~g----------~~~~~~l~ell~~aDvVi~~~p~~~~ 186 (304)
++|.|||+|.+|+.+|..|.+.| .+|++.||+..+........ +...+.+.+++++.|+|+.++|..-
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~- 80 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV- 80 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh-
Confidence 68999999999999999998888 89999999865554443332 1223467789999999999998542
Q ss_pred hhccccHHHH-hcCCCCCEEEEcCCC
Q 021995 187 TRGMFDKDRI-AKMKKGVLIVNNARG 211 (304)
Q Consensus 187 t~~~i~~~~l-~~mk~g~ilVn~~rg 211 (304)
+...+ +.++.|.-.++++-.
T Consensus 81 -----~~~i~ka~i~~gv~yvDts~~ 101 (389)
T COG1748 81 -----DLTILKACIKTGVDYVDTSYY 101 (389)
T ss_pred -----hHHHHHHHHHhCCCEEEcccC
Confidence 23444 334666667777643
No 222
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.55 E-value=0.0003 Score=66.02 Aligned_cols=106 Identities=15% Similarity=0.192 Sum_probs=69.2
Q ss_pred CEEEEEeeChhhHHHHHHhccC-CCeEE-EEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHH
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR 195 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~-G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~ 195 (304)
.+|||||+|+||+.+++.+... +++++ ++++++. .......++....+.++++.+.|+|++|+|.... -...
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~-~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th-----~~~~ 77 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGA-ETLDTETPVYAVADDEKHLDDVDVLILCMGSATD-----IPEQ 77 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcH-HHHhhcCCccccCCHHHhccCCCEEEEcCCCccC-----HHHH
Confidence 5899999999999999988754 88976 5687641 1122233444445777888999999999985432 1445
Q ss_pred HhcCCCCCEEEEcCCCch--hc-hHHHHHHHHc-CCce
Q 021995 196 IAKMKKGVLIVNNARGAI--MD-TQAVVDACSS-GHIA 229 (304)
Q Consensus 196 l~~mk~g~ilVn~~rg~~--vd-~~aL~~aL~~-g~i~ 229 (304)
...|+.|.-+|+..-... -+ .+.|.++-++ |+..
T Consensus 78 ~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs 115 (324)
T TIGR01921 78 APYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS 115 (324)
T ss_pred HHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 556777777888753211 12 2334445553 5554
No 223
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.53 E-value=0.00028 Score=66.20 Aligned_cols=89 Identities=19% Similarity=0.320 Sum_probs=66.1
Q ss_pred CCCEEEEEeeChhhHHHHHHhcc-CCC-eEEEEcCCCCChhHHH----hcC--ceecCCHHhhcCcCCEEEEcCCCChhh
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLEK----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKT 187 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~-~G~-~V~~~dr~~~~~~~~~----~~g--~~~~~~l~ell~~aDvVi~~~p~~~~t 187 (304)
.-++++|||.|..|+..++.+.. +.. +|.+|+|++.+.+.+. +.+ +..+++.++++++||+|+++++.+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~--- 203 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR--- 203 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC---
Confidence 35699999999999999887753 333 5999999876544322 123 334678999999999999998754
Q ss_pred hccccHHHHhcCCCCCEEEEcCC
Q 021995 188 RGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 188 ~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
.-+++.+ .+|+|+.++.+|.
T Consensus 204 ~P~~~~~---~l~~G~hi~~iGs 223 (315)
T PRK06823 204 EPLLQAE---DIQPGTHITAVGA 223 (315)
T ss_pred CceeCHH---HcCCCcEEEecCC
Confidence 3466555 4689999999984
No 224
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.49 E-value=0.00036 Score=65.22 Aligned_cols=116 Identities=22% Similarity=0.238 Sum_probs=73.8
Q ss_pred CEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChh-HHHh---------c--CceecCCHHhhcCcCCEEEEcCCCC
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKE---------T--GAKFEEDLDTMLPKCDIVVVNTPLT 184 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~-~~~~---------~--g~~~~~~l~ell~~aDvVi~~~p~~ 184 (304)
++|+|||.|.||..+|..+...|. +|+.+|....... ...+ . .+....++++ +++||+|+++.+..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 489999999999999999887665 8999998543222 1110 0 1223356766 78999999998732
Q ss_pred hh-----------hhccccH--HHHhcCCCCCEEEEcCCCchhchHHHHHH--HHcCCceEEE--ee
Q 021995 185 EK-----------TRGMFDK--DRIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGYS--GD 234 (304)
Q Consensus 185 ~~-----------t~~~i~~--~~l~~mk~g~ilVn~~rg~~vd~~aL~~a--L~~g~i~ga~--lD 234 (304)
.. +..++.. +.+....+++++|+++..-=+-...+.+. +...++.|.+ ||
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 11 1112210 12233357899999987665555555555 5555666665 56
No 225
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.48 E-value=0.00015 Score=60.05 Aligned_cols=109 Identities=17% Similarity=0.211 Sum_probs=71.0
Q ss_pred EEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec--------------CCHHhhcCcCCEEEEcCCCCh
Q 021995 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--------------EDLDTMLPKCDIVVVNTPLTE 185 (304)
Q Consensus 120 vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~--------------~~l~ell~~aDvVi~~~p~~~ 185 (304)
|+|+|.|.||..+|.+|+..|++|..+.|.. ..+..++.|.... .+..+....+|+|++|+...+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc
Confidence 6899999999999999988999999999865 4444444443211 111245678999999997543
Q ss_pred hhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEE
Q 021995 186 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS 232 (304)
Q Consensus 186 ~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~ 232 (304)
+...+ ......+.+++.++-.-.| +-.++.+.+.+...++.++.
T Consensus 80 -~~~~l-~~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~ 123 (151)
T PF02558_consen 80 -LEQAL-QSLKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV 123 (151)
T ss_dssp -HHHHH-HHHCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred -hHHHH-HHHhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence 33333 2344556677677766555 44456666666555555433
No 226
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=97.48 E-value=0.0008 Score=60.90 Aligned_cols=110 Identities=22% Similarity=0.289 Sum_probs=71.9
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEE--------cCCCCChhHHH----hcCc--eecC----------CHH-
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH--------DRVKMDPQLEK----ETGA--KFEE----------DLD- 168 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~--------dr~~~~~~~~~----~~g~--~~~~----------~l~- 168 (304)
++.|+++.|-|+|++|+.+|+.|...|++|++. |+...+.+... +.+. ..+. +-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 108 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD 108 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence 589999999999999999999999999998765 55433222222 1222 1111 121
Q ss_pred hhc-CcCCEEEEcCCCChhhhccccHHHHh-cCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995 169 TML-PKCDIVVVNTPLTEKTRGMFDKDRIA-KMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 229 (304)
Q Consensus 169 ell-~~aDvVi~~~p~~~~t~~~i~~~~l~-~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ 229 (304)
+++ ..||+++.|. ..+.|+.+... .+++++.+|--+--..+..++.. .|.++.|.
T Consensus 109 ~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~-~L~~rGI~ 165 (244)
T PF00208_consen 109 EILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE-ILRERGIL 165 (244)
T ss_dssp HGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH-HHHHTT-E
T ss_pred ccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH-HHHHCCCE
Confidence 444 5799999885 34678888888 77777665555544444455544 78877776
No 227
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.47 E-value=0.00056 Score=62.33 Aligned_cols=92 Identities=20% Similarity=0.277 Sum_probs=59.1
Q ss_pred CEEEEEee-ChhhHHHHHHhcc-CCCeEE-EEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHH
Q 021995 118 KTVGTVGC-GRIGKLLLQRLKP-FNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 194 (304)
Q Consensus 118 ~~vgIIG~-G~IG~~lA~~l~~-~G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~ 194 (304)
.+|+|+|+ |.||+.+++.+.. -++++. ++|+++.........++..+.+++++++.+|+|+.++|.... .+-
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~~~-----~~~ 76 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPEAT-----LEN 76 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHHHH-----HHH
Confidence 48999998 9999999998875 478865 577765332222334555567899999899999977763221 122
Q ss_pred HHhcCCCCCEEEEcCCCchh
Q 021995 195 RIAKMKKGVLIVNNARGAIM 214 (304)
Q Consensus 195 ~l~~mk~g~ilVn~~rg~~v 214 (304)
....++.|.-+|-...|-..
T Consensus 77 ~~~al~~G~~vvigttG~s~ 96 (257)
T PRK00048 77 LEFALEHGKPLVIGTTGFTE 96 (257)
T ss_pred HHHHHHcCCCEEEECCCCCH
Confidence 33334555555533344333
No 228
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.45 E-value=0.0009 Score=65.47 Aligned_cols=110 Identities=17% Similarity=0.299 Sum_probs=72.3
Q ss_pred ccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEE-cCC-------CCChhHHHh-----------c----CceecCCHH
Q 021995 112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DRV-------KMDPQLEKE-----------T----GAKFEEDLD 168 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~-dr~-------~~~~~~~~~-----------~----g~~~~~~l~ 168 (304)
+.+|.|+||.|.|||++|+.+|+.|..+|++|+++ |.+ ....+...+ + +.+.. +.+
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~ 305 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGG 305 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCc
Confidence 34689999999999999999999999999998877 522 112221110 0 11222 333
Q ss_pred hhcC-cCCEEEEcCCCChhhhccccHHHHhcCC-CC-CEEEEcCCCchhchHHHHHHHHcCCce
Q 021995 169 TMLP-KCDIVVVNTPLTEKTRGMFDKDRIAKMK-KG-VLIVNNARGAIMDTQAVVDACSSGHIA 229 (304)
Q Consensus 169 ell~-~aDvVi~~~p~~~~t~~~i~~~~l~~mk-~g-~ilVn~~rg~~vd~~aL~~aL~~g~i~ 229 (304)
+++. +||+++-|.. .+.|+.+....++ ++ .+++-.+.+++ +.+-.+.|.++.|.
T Consensus 306 ~i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~--t~~A~~~L~~rGI~ 362 (445)
T PRK09414 306 SPWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS--TPEAIEVFLEAGVL 362 (445)
T ss_pred cccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC--CHHHHHHHHHCCcE
Confidence 4443 6999998875 3566677666663 23 45666667776 45566777887776
No 229
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.42 E-value=0.00034 Score=63.80 Aligned_cols=115 Identities=16% Similarity=0.182 Sum_probs=73.7
Q ss_pred EEEEee-ChhhHHHHHHhccCC----CeEEEEcCCCCChhHHH-h----------cCceecCCHHhhcCcCCEEEEcCCC
Q 021995 120 VGTVGC-GRIGKLLLQRLKPFN----CNLLYHDRVKMDPQLEK-E----------TGAKFEEDLDTMLPKCDIVVVNTPL 183 (304)
Q Consensus 120 vgIIG~-G~IG~~lA~~l~~~G----~~V~~~dr~~~~~~~~~-~----------~g~~~~~~l~ell~~aDvVi~~~p~ 183 (304)
|+|||. |.+|..++..+...| .++..||.+....+... + ..+...+++++.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999987767 78999998764322111 0 1223345667889999999996522
Q ss_pred --Ch---------hhhccccHH---HHhcCCCCCEEEEcCCCchhchHHHHHH--HHcCCceEEE-eec
Q 021995 184 --TE---------KTRGMFDKD---RIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGYS-GDV 235 (304)
Q Consensus 184 --~~---------~t~~~i~~~---~l~~mk~g~ilVn~~rg~~vd~~aL~~a--L~~g~i~ga~-lDV 235 (304)
.+ .+..++ .+ .+....+++++||.+..-=+-...+.+. +...++.|.+ +|.
T Consensus 81 ~~~~g~~r~~~~~~n~~i~-~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~ 148 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIV-KEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDP 148 (263)
T ss_pred CCCcCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchH
Confidence 11 111111 22 2333458999999974443444445444 4667788888 775
No 230
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.41 E-value=0.0002 Score=67.12 Aligned_cols=92 Identities=21% Similarity=0.259 Sum_probs=56.1
Q ss_pred CEEEEEeeChhhHHHHHHhcc-CCC-eEEEEcCCCCChhHHH----hcC--ceecCCHHhhcCcCCEEEEcCCCChhhhc
Q 021995 118 KTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLEK----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTRG 189 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~-~G~-~V~~~dr~~~~~~~~~----~~g--~~~~~~l~ell~~aDvVi~~~p~~~~t~~ 189 (304)
++++|||.|..|+..++.+.. ++. +|.+|+|++...+.+. .++ +..+++.++++++||+|+.++|.+..+ -
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P 207 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P 207 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence 589999999999999987753 555 5999999864433222 123 345688999999999999999866422 4
Q ss_pred cccHHHHhcCCCCCEEEEcCCCch
Q 021995 190 MFDKDRIAKMKKGVLIVNNARGAI 213 (304)
Q Consensus 190 ~i~~~~l~~mk~g~ilVn~~rg~~ 213 (304)
+++.+ .+++|+.++.+|....
T Consensus 208 ~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 208 VFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp SB-GG---GS-TT-EEEE-S-SST
T ss_pred cccHH---HcCCCcEEEEecCCCC
Confidence 55544 5789999999986543
No 231
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.40 E-value=0.00053 Score=63.94 Aligned_cols=89 Identities=11% Similarity=0.134 Sum_probs=65.2
Q ss_pred CCCEEEEEeeChhhHHHHHHhcc-CCC-eEEEEcCCCCChhHH-Hh----cC--ceecCCHHhhcCcCCEEEEcCCCChh
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLE-KE----TG--AKFEEDLDTMLPKCDIVVVNTPLTEK 186 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~-~G~-~V~~~dr~~~~~~~~-~~----~g--~~~~~~l~ell~~aDvVi~~~p~~~~ 186 (304)
.-+++||||.|..|+..++.+.. +.. +|.+|+|++.+.+.+ ++ .+ +..++++++++.+||+|+.++|.+
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~-- 193 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD-- 193 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC--
Confidence 35799999999999998887764 444 499999987544332 22 24 345678999999999999998854
Q ss_pred hhccccHHHHhcCCCCCEEEEcCC
Q 021995 187 TRGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 187 t~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
.-++..+ .+|||+.+.-+|.
T Consensus 194 -~P~~~~~---~l~pg~hV~aiGs 213 (301)
T PRK06407 194 -TPIFNRK---YLGDEYHVNLAGS 213 (301)
T ss_pred -CcEecHH---HcCCCceEEecCC
Confidence 3566555 4578887777764
No 232
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.39 E-value=0.00052 Score=63.39 Aligned_cols=71 Identities=11% Similarity=0.052 Sum_probs=51.9
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHH-HhcC----ceec---CCHHhhcCcCCEEEEcCCCC
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-KETG----AKFE---EDLDTMLPKCDIVVVNTPLT 184 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~-~~~g----~~~~---~~l~ell~~aDvVi~~~p~~ 184 (304)
.+.|+++.|||.|.+|++++..|...|+ +|++++|+..+.+.. ...+ +... +++.+.+.++|+|+.++|..
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 4678999999999999999999999998 599999986433322 2221 1112 22345667899999999864
No 233
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.38 E-value=0.00041 Score=60.96 Aligned_cols=91 Identities=14% Similarity=0.169 Sum_probs=58.6
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCCh-hHHHhcC-ceec-CC-HHhhcCcCCEEEEcCCCChhhh
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKETG-AKFE-ED-LDTMLPKCDIVVVNTPLTEKTR 188 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~-~~~~~~g-~~~~-~~-l~ell~~aDvVi~~~p~~~~t~ 188 (304)
.+|.|++|.|||.|.+|...++.|...|++|+++++...+. ......+ +... .. .++.+..+|+|+.++...+.+
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN- 84 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVN- 84 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHH-
Confidence 47999999999999999999999999999999998754221 1111112 2211 11 134578899988887654332
Q ss_pred ccccHHHHhcCCCCCEEEEcC
Q 021995 189 GMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 189 ~~i~~~~l~~mk~g~ilVn~~ 209 (304)
.......+.+ .++|++
T Consensus 85 ----~~i~~~a~~~-~lvn~~ 100 (202)
T PRK06718 85 ----EQVKEDLPEN-ALFNVI 100 (202)
T ss_pred ----HHHHHHHHhC-CcEEEC
Confidence 2222223333 467774
No 234
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=97.36 E-value=0.0035 Score=61.32 Aligned_cols=111 Identities=20% Similarity=0.253 Sum_probs=71.1
Q ss_pred ccccCCCEEEEEeeChhhHHHHHHhccCCCeEE-EEcCC-------CCChhHH--------------Hhc-----Cceec
Q 021995 112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLE--------------KET-----GAKFE 164 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~-~~dr~-------~~~~~~~--------------~~~-----g~~~~ 164 (304)
+.+|.|+||.|-|+|++|+.+|++|..+|++|+ +.|.+ ..+.+.. ..+ ++++.
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~ 311 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV 311 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence 457899999999999999999999999999988 44544 1111111 000 22332
Q ss_pred CCHHhh-cCcCCEEEEcCCCChhhhccccHHHHhcC-CCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995 165 EDLDTM-LPKCDIVVVNTPLTEKTRGMFDKDRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGHIA 229 (304)
Q Consensus 165 ~~l~el-l~~aDvVi~~~p~~~~t~~~i~~~~l~~m-k~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ 229 (304)
+ -+++ --.||+++-|. +.+.|+.+..+.+ +.++.+|--+-...... +-.+.|.++.|.
T Consensus 312 ~-~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~-eA~~~L~~~GI~ 371 (454)
T PTZ00079 312 P-GKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTI-EATHLFKKNGVI 371 (454)
T ss_pred C-CcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCH-HHHHHHHHCCcE
Confidence 2 2222 24699998776 5577877777765 55666665554444444 344666666665
No 235
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.36 E-value=0.00055 Score=65.85 Aligned_cols=91 Identities=18% Similarity=0.235 Sum_probs=66.2
Q ss_pred CCEEEEEeeChhhHHHHHHhcc-C-CC-eEEEEcCCCCChhHHH-----hc-C---ceecCCHHhhcCcCCEEEEcCCCC
Q 021995 117 GKTVGTVGCGRIGKLLLQRLKP-F-NC-NLLYHDRVKMDPQLEK-----ET-G---AKFEEDLDTMLPKCDIVVVNTPLT 184 (304)
Q Consensus 117 g~~vgIIG~G~IG~~lA~~l~~-~-G~-~V~~~dr~~~~~~~~~-----~~-g---~~~~~~l~ell~~aDvVi~~~p~~ 184 (304)
-++++|||.|..|+..++.+.. + .. +|.+|+|++.+.+.+. .+ + +..+++.++++++||+|+.|++.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 4699999999999999988765 4 23 6999999875443221 11 2 445688999999999999998754
Q ss_pred h---hhhccccHHHHhcCCCCCEEEEcCC
Q 021995 185 E---KTRGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 185 ~---~t~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
. .+.-++..+ .+|+|+.++.++.
T Consensus 235 ~~~~s~~Pv~~~~---~lkpG~hv~~ig~ 260 (379)
T PRK06199 235 TGDPSTYPYVKRE---WVKPGAFLLMPAA 260 (379)
T ss_pred CCCCCcCcEecHH---HcCCCcEEecCCc
Confidence 3 233566555 4589988877765
No 236
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=97.30 E-value=0.00092 Score=64.14 Aligned_cols=96 Identities=22% Similarity=0.443 Sum_probs=68.7
Q ss_pred ccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCC------------------Ch-hHHHhcCceecCCHHhhc-
Q 021995 112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM------------------DP-QLEKETGAKFEEDLDTML- 171 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~------------------~~-~~~~~~g~~~~~~l~ell- 171 (304)
+.+|.|+||.|-|+|++|+.+|+.|...|.+|++++-+.. .. ......+.++... ++++
T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~ 280 (411)
T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLE 280 (411)
T ss_pred CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-ccccc
Confidence 3358999999999999999999999988999988875543 11 1111224455533 4444
Q ss_pred CcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchh
Q 021995 172 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM 214 (304)
Q Consensus 172 ~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~v 214 (304)
..||+++-|. +.+.|+.+...+++-. +++-.+.+++-
T Consensus 281 ~~cDIl~PcA-----~~n~I~~~na~~l~ak-~V~EgAN~P~t 317 (411)
T COG0334 281 VDCDILIPCA-----LENVITEDNADQLKAK-IVVEGANGPTT 317 (411)
T ss_pred ccCcEEcccc-----cccccchhhHHHhhhc-EEEeccCCCCC
Confidence 4699987665 5678888888888865 67777777754
No 237
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=97.27 E-value=0.00081 Score=52.85 Aligned_cols=79 Identities=23% Similarity=0.212 Sum_probs=55.7
Q ss_pred hhHHHHHHhccCCCeEEEEcCCCCChhHHHh----cCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCC
Q 021995 128 IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 203 (304)
Q Consensus 128 IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~----~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ 203 (304)
-+..+++.|+..|++|.+|||.-. ...... .++...+++++.++.+|+|+++++.. +...+--.+....|+++.
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~~~~~~~~~~~~~ 95 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVD-EEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELDWEEIAKLMRKPP 95 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSH-HHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCGHHHHHHHSCSSE
T ss_pred HHHHHHHHHHHCCCEEEEECCccC-hHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccCHHHHHHhcCCCC
Confidence 456899999999999999999643 233333 46777789999999999999999854 333332345567788899
Q ss_pred EEEEc
Q 021995 204 LIVNN 208 (304)
Q Consensus 204 ilVn~ 208 (304)
++||+
T Consensus 96 ~iiD~ 100 (106)
T PF03720_consen 96 VIIDG 100 (106)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99987
No 238
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.27 E-value=0.00085 Score=63.22 Aligned_cols=88 Identities=22% Similarity=0.268 Sum_probs=68.3
Q ss_pred CCEEEEEeeChhhHHHHHHhc-cCCC-eEEEEcCCCCChhHHH-----hcC--ceecCCHHhhcCcCCEEEEcCCCChhh
Q 021995 117 GKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDPQLEK-----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKT 187 (304)
Q Consensus 117 g~~vgIIG~G~IG~~lA~~l~-~~G~-~V~~~dr~~~~~~~~~-----~~g--~~~~~~l~ell~~aDvVi~~~p~~~~t 187 (304)
-++++|||.|..++.-++.++ -++. +|.+|+|++...+.+. +.+ +...++.+++++.||+|+.++|.++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 458999999999999999886 4565 4999999875544333 222 3567899999999999999999765
Q ss_pred hccccHHHHhcCCCCCEEEEcCC
Q 021995 188 RGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 188 ~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
-++..+. +++|..+..+|.
T Consensus 208 -Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 208 -PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred -CeecHhh---cCCCcEEEecCC
Confidence 4666555 579999988884
No 239
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.27 E-value=0.00072 Score=59.59 Aligned_cols=92 Identities=20% Similarity=0.126 Sum_probs=61.9
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCCh-hHHHhc-Cceec--CCHHhhcCcCCEEEEcCCCChhhh
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKET-GAKFE--EDLDTMLPKCDIVVVNTPLTEKTR 188 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~-~~~~~~-g~~~~--~~l~ell~~aDvVi~~~p~~~~t~ 188 (304)
.+|.|++|.|||.|.+|..-++.|..+|++|+++++...+. ....+. .+... +--.+.+.++|+|+.+....+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~--- 81 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEE--- 81 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHH---
Confidence 36899999999999999999999999999999999865321 111122 22211 111345788999887765332
Q ss_pred ccccHHHHhcCCCCCEEEEcC
Q 021995 189 GMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 189 ~~i~~~~l~~mk~g~ilVn~~ 209 (304)
+|.......+.-.++||+.
T Consensus 82 --ln~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 82 --LNRRVAHAARARGVPVNVV 100 (205)
T ss_pred --HHHHHHHHHHHcCCEEEEC
Confidence 2445555566667778864
No 240
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.27 E-value=0.00051 Score=55.18 Aligned_cols=86 Identities=22% Similarity=0.324 Sum_probs=51.9
Q ss_pred EEEEEe-eChhhHHHHHHhcc-CCCeEE-EEcCCC-CChhHHHhcC----c---eecCCHHhhcCcCCEEEEcCCCChhh
Q 021995 119 TVGTVG-CGRIGKLLLQRLKP-FNCNLL-YHDRVK-MDPQLEKETG----A---KFEEDLDTMLPKCDIVVVNTPLTEKT 187 (304)
Q Consensus 119 ~vgIIG-~G~IG~~lA~~l~~-~G~~V~-~~dr~~-~~~~~~~~~g----~---~~~~~l~ell~~aDvVi~~~p~~~~t 187 (304)
+|+||| .|.+|+.+.+.|.. ..+++. +++++. .........+ . ...+...+.+.++|+|++|+|....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~- 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGAS- 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHH-
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHH-
Confidence 699999 99999999999975 456644 455544 1111221111 1 1111122445999999999994422
Q ss_pred hccccHHHHhc-CCCCCEEEEcCC
Q 021995 188 RGMFDKDRIAK-MKKGVLIVNNAR 210 (304)
Q Consensus 188 ~~~i~~~~l~~-mk~g~ilVn~~r 210 (304)
.+..+. +++|..+||.+.
T Consensus 80 -----~~~~~~~~~~g~~ViD~s~ 98 (121)
T PF01118_consen 80 -----KELAPKLLKAGIKVIDLSG 98 (121)
T ss_dssp -----HHHHHHHHHTTSEEEESSS
T ss_pred -----HHHHHHHhhCCcEEEeCCH
Confidence 222222 578999999974
No 241
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.27 E-value=0.00077 Score=64.03 Aligned_cols=90 Identities=13% Similarity=0.142 Sum_probs=63.4
Q ss_pred CCEEEEEeeChhhHHHHHHhc-cCCC-eEEEEcCCCCChhHHH-h---cC--ceecCCHHhhcCcCCEEEEcCCCChhhh
Q 021995 117 GKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDPQLEK-E---TG--AKFEEDLDTMLPKCDIVVVNTPLTEKTR 188 (304)
Q Consensus 117 g~~vgIIG~G~IG~~lA~~l~-~~G~-~V~~~dr~~~~~~~~~-~---~g--~~~~~~l~ell~~aDvVi~~~p~~~~t~ 188 (304)
-++++|||.|..|+..++.+. -+.. +|.+|+|++.+.+.+. + .+ +..++++++++++||+|++++|.+. ..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-NA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-CC
Confidence 468999999999988877654 3444 5999999875443222 1 12 3446789999999999999997432 12
Q ss_pred ccccHHHHhcCCCCCEEEEcCC
Q 021995 189 GMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 189 ~~i~~~~l~~mk~g~ilVn~~r 210 (304)
-++..+ .+|+|+.+.-+|.
T Consensus 208 Pvl~~~---~lkpG~hV~aIGs 226 (346)
T PRK07589 208 TILTDD---MVEPGMHINAVGG 226 (346)
T ss_pred ceecHH---HcCCCcEEEecCC
Confidence 345544 4689998877763
No 242
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.26 E-value=0.0019 Score=63.62 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=74.1
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCCh-----hHHHhcCceec--CCHHhhcCcCCEEEEcCCCChh
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEK 186 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~-----~~~~~~g~~~~--~~l~ell~~aDvVi~~~p~~~~ 186 (304)
.+.+++|+|+|+|..|.++|+.|+..|++|.++|.+.... ......|+... ....+.+.++|+|+.. |.-+.
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~ 89 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI 89 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC
Confidence 4678999999999999999999999999999999764311 12344465432 2234556789999887 43322
Q ss_pred hhc-----------cccH-HHHhcC-CCCCEEEEcCCCchhchHHHHHHHHcCCc
Q 021995 187 TRG-----------MFDK-DRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGHI 228 (304)
Q Consensus 187 t~~-----------~i~~-~~l~~m-k~g~ilVn~~rg~~vd~~aL~~aL~~g~i 228 (304)
+.. ++.+ +.+.+. +...+-|--+.|+.-...-+...|.....
T Consensus 90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~ 144 (458)
T PRK01710 90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGY 144 (458)
T ss_pred CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 211 1211 222222 33355666667888888888888875443
No 243
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.26 E-value=0.0013 Score=53.11 Aligned_cols=103 Identities=21% Similarity=0.291 Sum_probs=61.7
Q ss_pred EEEEEee-ChhhHHHHHHhcc-CCCeE-EEEcCCCCCh---hHH-----HhcCceecCCHHhhcCcCCEEEEcCCCChhh
Q 021995 119 TVGTVGC-GRIGKLLLQRLKP-FNCNL-LYHDRVKMDP---QLE-----KETGAKFEEDLDTMLPKCDIVVVNTPLTEKT 187 (304)
Q Consensus 119 ~vgIIG~-G~IG~~lA~~l~~-~G~~V-~~~dr~~~~~---~~~-----~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t 187 (304)
+|+|+|+ |+||+.+++.+.. -|+++ .++++.+.+. +.. ...++...+++++++.++|+++-.. +++.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~~ 79 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPDA 79 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChHH
Confidence 7999999 9999999999986 68885 4667755111 110 1335556689999999999998766 2222
Q ss_pred hccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcC
Q 021995 188 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 226 (304)
Q Consensus 188 ~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g 226 (304)
-. ...-..++.+.-+|-...|-.-++.+.++.+.+.
T Consensus 80 ~~---~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 80 VY---DNLEYALKHGVPLVIGTTGFSDEQIDELEELAKK 115 (124)
T ss_dssp HH---HHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTT
T ss_pred hH---HHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhcc
Confidence 11 1111223456777777777755554555554443
No 244
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.22 E-value=0.0016 Score=60.43 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=33.9
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCC
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVK 150 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~ 150 (304)
.+.++++.|+|.|.+|++++..|...|++ |.+++|+.
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 56789999999999999999999999997 99999975
No 245
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=97.21 E-value=0.0018 Score=60.93 Aligned_cols=91 Identities=22% Similarity=0.272 Sum_probs=68.1
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-----CCHHhhcC---cCCEEEEcCCCCh
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP---KCDIVVVNTPLTE 185 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-----~~l~ell~---~aDvVi~~~p~~~ 185 (304)
..|++|.|+|.|.+|...++.++..|+ +|++.++++...+.++++|+..+ .++.++.. ..|+++-++....
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~ 247 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPS 247 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHH
Confidence 368999999999999999999999999 58888887777778888886432 12333332 2789888875321
Q ss_pred hhhccccHHHHhcCCCCCEEEEcCC
Q 021995 186 KTRGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 186 ~t~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
. -...++.++++..+|.++.
T Consensus 248 ~-----~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 248 S-----INTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred H-----HHHHHHHhhcCCEEEEEcc
Confidence 1 1466788899999999875
No 246
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=97.15 E-value=0.0029 Score=53.38 Aligned_cols=94 Identities=17% Similarity=0.317 Sum_probs=67.8
Q ss_pred CCCEEEEEee--ChhhHHHHHHhccCCCeEEEEcCCC--CCh--hHH-------HhcC--ceecCCHHhhcCcCCEEEEc
Q 021995 116 EGKTVGTVGC--GRIGKLLLQRLKPFNCNLLYHDRVK--MDP--QLE-------KETG--AKFEEDLDTMLPKCDIVVVN 180 (304)
Q Consensus 116 ~g~~vgIIG~--G~IG~~lA~~l~~~G~~V~~~dr~~--~~~--~~~-------~~~g--~~~~~~l~ell~~aDvVi~~ 180 (304)
.|++|++||= +++.++++..+..||+++.++.|.. -+. +.. .+.| +...+++++.++++|+|...
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 4789999993 8999999999999999999998865 222 111 2223 34568999999999999876
Q ss_pred CCC----Chh-------hhccccHHHHhcCCCCCEEEEcC
Q 021995 181 TPL----TEK-------TRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 181 ~p~----~~~-------t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
.-. .+. ....++++.++.+|++++|..+.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 543 111 11457888999899999888775
No 247
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.15 E-value=0.0014 Score=63.74 Aligned_cols=111 Identities=13% Similarity=0.094 Sum_probs=67.3
Q ss_pred CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhh--------
Q 021995 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR-------- 188 (304)
Q Consensus 117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~-------- 188 (304)
.++|.|||+|.+|.++|+.|+..|++|+++|++...........-......+....++|+++.+.+..+...
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~ 82 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS 82 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence 468999999999999999999999999999986532211100000111233344578999888765433211
Q ss_pred --ccccHHHH--hc--C-CCCCEEEEcCCCchhchHHHHHHHHcCC
Q 021995 189 --GMFDKDRI--AK--M-KKGVLIVNNARGAIMDTQAVVDACSSGH 227 (304)
Q Consensus 189 --~~i~~~~l--~~--m-k~g~ilVn~~rg~~vd~~aL~~aL~~g~ 227 (304)
.++.+..+ .. + +...+=|--+.|+.-...-|...|+...
T Consensus 83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g 128 (418)
T PRK00683 83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLG 128 (418)
T ss_pred CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcC
Confidence 12222222 21 1 2224555556788877777777787543
No 248
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.14 E-value=0.0014 Score=52.39 Aligned_cols=100 Identities=20% Similarity=0.290 Sum_probs=66.3
Q ss_pred CEEEEEe----eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995 118 KTVGTVG----CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 193 (304)
Q Consensus 118 ~~vgIIG----~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~ 193 (304)
|+|+||| -+..|..+.+.|+..|++|+.+++.... -.|...+.+++|.-...|++++++|.. .+..++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~-----i~G~~~y~sl~e~p~~iDlavv~~~~~-~~~~~v-- 72 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE-----ILGIKCYPSLAEIPEPIDLAVVCVPPD-KVPEIV-- 72 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE-----ETTEE-BSSGGGCSST-SEEEE-S-HH-HHHHHH--
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE-----ECcEEeeccccCCCCCCCEEEEEcCHH-HHHHHH--
Confidence 5899999 6889999999999999999999986521 235666788988558899999999843 222333
Q ss_pred HHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995 194 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 229 (304)
Q Consensus 194 ~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ 229 (304)
+.+..+.-+.+++..+ ..++++.+.+++..+.
T Consensus 73 ~~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 73 DEAAALGVKAVWLQPG----AESEELIEAAREAGIR 104 (116)
T ss_dssp HHHHHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred HHHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence 2233346678888887 6777888888887776
No 249
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=97.13 E-value=0.013 Score=54.75 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=84.0
Q ss_pred HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEee-ChhhHHHHHH
Q 021995 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGC-GRIGKLLLQR 135 (304)
Q Consensus 57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~-G~IG~~lA~~ 135 (304)
.+...+++|.|.-+....++ .+|+=++.+.+++ | .+.|.+|+++|- +++.++++..
T Consensus 115 ~a~~~~vPVINag~~~~HPt--QaL~Dl~Ti~e~~--------------------g-~l~gl~i~~vGd~~~v~~Sl~~~ 171 (304)
T PRK00779 115 LAEYSTVPVINGLTDLSHPC--QILADLLTIYEHR--------------------G-SLKGLKVAWVGDGNNVANSLLLA 171 (304)
T ss_pred HHHhCCCCEEeCCCCCCChH--HHHHHHHHHHHHh--------------------C-CcCCcEEEEEeCCCccHHHHHHH
Confidence 45667899999865433332 2344444444321 1 378999999997 7899999999
Q ss_pred hccCCCeEEEEcCCCC-Ch-hH----HHhcC--ceecCCHHhhcCcCCEEEEcC----CCCh---h-----hhccccHHH
Q 021995 136 LKPFNCNLLYHDRVKM-DP-QL----EKETG--AKFEEDLDTMLPKCDIVVVNT----PLTE---K-----TRGMFDKDR 195 (304)
Q Consensus 136 l~~~G~~V~~~dr~~~-~~-~~----~~~~g--~~~~~~l~ell~~aDvVi~~~----p~~~---~-----t~~~i~~~~ 195 (304)
+..+|++|....|... .. +. +++.| +...+++++.++++|+|.... .... + -..-++++.
T Consensus 172 l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~ 251 (304)
T PRK00779 172 AALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEEL 251 (304)
T ss_pred HHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCccccccchhHHHHHHHhcccCCCHHH
Confidence 9999999999987542 21 22 23345 345679999999999998752 1100 0 122356667
Q ss_pred HhcCCCCCEEEEc
Q 021995 196 IAKMKKGVLIVNN 208 (304)
Q Consensus 196 l~~mk~g~ilVn~ 208 (304)
++.+|++++|..+
T Consensus 252 l~~~~~~~ivmHp 264 (304)
T PRK00779 252 MALAKPDAIFMHC 264 (304)
T ss_pred HHhcCCCeEEecC
Confidence 7777777666554
No 250
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=97.12 E-value=0.0015 Score=61.69 Aligned_cols=90 Identities=13% Similarity=0.233 Sum_probs=64.8
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCC---CCChhHHHhcCceecC----CHHh--hcCcCCEEEEcCCCChh
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV---KMDPQLEKETGAKFEE----DLDT--MLPKCDIVVVNTPLTEK 186 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~---~~~~~~~~~~g~~~~~----~l~e--ll~~aDvVi~~~p~~~~ 186 (304)
.|++|.|+|.|.+|...++.++..|++|++++++ +.+.+.++++|+.... ++.+ .....|+|+-++....
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~- 250 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP- 250 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH-
Confidence 6889999999999999999999999999999873 4445566677765431 1111 2245788888876321
Q ss_pred hhccccHHHHhcCCCCCEEEEcCC
Q 021995 187 TRGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 187 t~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
. -.+.++.|+++..++.++.
T Consensus 251 ---~-~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 251 ---L-AFEALPALAPNGVVILFGV 270 (355)
T ss_pred ---H-HHHHHHHccCCcEEEEEec
Confidence 1 2466788888888887763
No 251
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=97.11 E-value=0.011 Score=56.07 Aligned_cols=131 Identities=16% Similarity=0.175 Sum_probs=84.6
Q ss_pred HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeC--hhhHHHHH
Q 021995 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCG--RIGKLLLQ 134 (304)
Q Consensus 57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G--~IG~~lA~ 134 (304)
.++..+|+|.|.-+....++ .+|+=++.+.+. .+..+.|++|++||-+ ++.++++.
T Consensus 118 ~a~~~~vPVINa~~~~~HPt--QaL~Dl~Ti~e~--------------------~g~~l~gl~ia~vGD~~~~v~~Sl~~ 175 (334)
T PRK01713 118 LAEYAGVPVFNGLTDEFHPT--QMLADVLTMIEN--------------------CDKPLSEISYVYIGDARNNMGNSLLL 175 (334)
T ss_pred HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHH--------------------cCCCcCCcEEEEECCCccCHHHHHHH
Confidence 45667899999855433221 234444444331 1224789999999986 68898999
Q ss_pred HhccCCCeEEEEcCCCC-Chh--------HHHhcC--ceecCCHHhhcCcCCEEEEcC----CCC-h---h-----hhcc
Q 021995 135 RLKPFNCNLLYHDRVKM-DPQ--------LEKETG--AKFEEDLDTMLPKCDIVVVNT----PLT-E---K-----TRGM 190 (304)
Q Consensus 135 ~l~~~G~~V~~~dr~~~-~~~--------~~~~~g--~~~~~~l~ell~~aDvVi~~~----p~~-~---~-----t~~~ 190 (304)
.+..+|++|.++.|... +.+ .++..| +...+++++.++++|+|..-. ... + + ....
T Consensus 176 ~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~~w~sm~~~~~~~~~~~~~~~~y~ 255 (334)
T PRK01713 176 IGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTDVWVSMGEPLETWGERIKLLMPYQ 255 (334)
T ss_pred HHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcceeecccchhhHHHHHHhccCCc
Confidence 99999999999987542 221 112235 345689999999999998742 100 0 0 0123
Q ss_pred ccHHHHhcC-CCCCEEEEcC
Q 021995 191 FDKDRIAKM-KKGVLIVNNA 209 (304)
Q Consensus 191 i~~~~l~~m-k~g~ilVn~~ 209 (304)
++++.++.. |++++|..+.
T Consensus 256 v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 256 VTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred CCHHHHhccCCCCCEEECCC
Confidence 677777775 6888887765
No 252
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.11 E-value=0.0027 Score=60.71 Aligned_cols=110 Identities=16% Similarity=0.231 Sum_probs=78.6
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh----------------c---C-ceecCCHHhhcCcCCEE
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----------------T---G-AKFEEDLDTMLPKCDIV 177 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~----------------~---g-~~~~~~l~ell~~aDvV 177 (304)
++|.|+|.|-+|-..+..|..+|++|+++|..+.+-+...+ . | .....+.++.++.+|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 58999999999999999999999999999986533222111 0 1 34456788899999999
Q ss_pred EEcCCCChhhhcccc--------HHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCC
Q 021995 178 VVNTPLTEKTRGMFD--------KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 227 (304)
Q Consensus 178 i~~~p~~~~t~~~i~--------~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~ 227 (304)
++++|..+.-.+-+| ++..+.++..+++|+=|.-++=-.+.+.+-+....
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~ 138 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREEN 138 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhc
Confidence 999986554344433 34556677779999998866655555555444433
No 253
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=97.10 E-value=0.017 Score=54.05 Aligned_cols=129 Identities=16% Similarity=0.236 Sum_probs=84.4
Q ss_pred HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEee-ChhhHHHHHH
Q 021995 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGC-GRIGKLLLQR 135 (304)
Q Consensus 57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~-G~IG~~lA~~ 135 (304)
.++..+++|.|.-+....++ .+|+=++.+.+++ | .+.|.+|+++|- +++.++++..
T Consensus 111 ~a~~~~vPVINa~~~~~HPt--QaL~Dl~Ti~e~~--------------------g-~l~g~~v~~vGd~~~v~~Sl~~~ 167 (304)
T TIGR00658 111 LAKYASVPVINGLTDLFHPC--QALADLLTIIEHF--------------------G-KLKGVKVVYVGDGNNVCNSLMLA 167 (304)
T ss_pred HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHHh--------------------C-CCCCcEEEEEeCCCchHHHHHHH
Confidence 45677899999865433332 2344444444321 1 378999999996 7899999999
Q ss_pred hccCCCeEEEEcCCCCCh-h-H-------HHhcC--ceecCCHHhhcCcCCEEEEcC--CCCh----------hhhcccc
Q 021995 136 LKPFNCNLLYHDRVKMDP-Q-L-------EKETG--AKFEEDLDTMLPKCDIVVVNT--PLTE----------KTRGMFD 192 (304)
Q Consensus 136 l~~~G~~V~~~dr~~~~~-~-~-------~~~~g--~~~~~~l~ell~~aDvVi~~~--p~~~----------~t~~~i~ 192 (304)
+..+|++|.+..|..... + . +.+.| +...+++++.++++|+|..-. .... .....++
T Consensus 168 l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~ 247 (304)
T TIGR00658 168 GAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVWVSMGEEDKKEERLKLFRPYQVN 247 (304)
T ss_pred HHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCcccCccccccHHHHHHhcCCcCC
Confidence 999999999998754221 1 1 22334 345679999999999998743 1000 0122467
Q ss_pred HHHHhcCCCCCEEEEc
Q 021995 193 KDRIAKMKKGVLIVNN 208 (304)
Q Consensus 193 ~~~l~~mk~g~ilVn~ 208 (304)
++.++.+|++++|..+
T Consensus 248 ~~~l~~~~~~~ivmHp 263 (304)
T TIGR00658 248 EELMELAKPEVIFMHC 263 (304)
T ss_pred HHHHhhcCCCCEEECC
Confidence 7777777777776654
No 254
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.09 E-value=0.002 Score=60.06 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=71.7
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-cCcee----------c-CCHHhhcCcCCEEEEcCCCCh
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKF----------E-EDLDTMLPKCDIVVVNTPLTE 185 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-~g~~~----------~-~~l~ell~~aDvVi~~~p~~~ 185 (304)
++|+|+|.|.||..+|-+|...|++|+.++|.....+...+ .|... . ....+....+|+|++|+-..+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~~ 82 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAYD 82 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHHh
Confidence 47999999999999999999999999999986433332222 12210 0 011123457899999987542
Q ss_pred hhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEEE
Q 021995 186 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS 232 (304)
Q Consensus 186 ~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga~ 232 (304)
+...+ +...+.+.+++.+|-.-.| +-.++.+.+.+...++.++.
T Consensus 83 -~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~ 126 (305)
T PRK05708 83 -AEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFAS 126 (305)
T ss_pred -HHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEE
Confidence 33332 4555667788877766544 34455677777665555443
No 255
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.08 E-value=0.0015 Score=55.06 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=49.3
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCc-ee-cCCH-HhhcCcCCEEEEcCCCC
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA-KF-EEDL-DTMLPKCDIVVVNTPLT 184 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~-~~-~~~l-~ell~~aDvVi~~~p~~ 184 (304)
.+|.|++|.|||.|.+|...++.|...|++|+++++.. .+...+++. .. ...+ ++-+.++|+|+.++...
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~--~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~ 81 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI--CKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQH 81 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc--CHHHHhccCcEEEecccChhcCCCceEEEECCCCH
Confidence 47999999999999999999999999999999997643 222223321 11 0111 23467889888877543
No 256
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.07 E-value=0.00075 Score=60.31 Aligned_cols=69 Identities=22% Similarity=0.264 Sum_probs=51.0
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh--cCcee-------cCCHHhh-cCcCCEEEEcCCCChh
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--TGAKF-------EEDLDTM-LPKCDIVVVNTPLTEK 186 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~--~g~~~-------~~~l~el-l~~aDvVi~~~p~~~~ 186 (304)
+++.|+|+|.+|..+|+.|...|++|+.+++++...+.... ..... .+.|+++ +.++|+++.+...+..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~ 79 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEV 79 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH
Confidence 57999999999999999999999999999997754444222 33221 1235555 7889999988876543
No 257
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.03 E-value=0.0034 Score=58.00 Aligned_cols=92 Identities=18% Similarity=0.252 Sum_probs=61.1
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHH-hcCc-------eecCCHHhhcCcCCEEEEcCCC
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEK-ETGA-------KFEEDLDTMLPKCDIVVVNTPL 183 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~-~~g~-------~~~~~l~ell~~aDvVi~~~p~ 183 (304)
....|+++.|+|.|..+++++..|+..|+ +|++++|+..+.+... .++. ....+++. ..++|+||.++|.
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~-~~~~dliINaTp~ 200 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEG-LEEADLLINATPV 200 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccccccccccccccc-ccccCEEEECCCC
Confidence 35678999999999999999999999995 6999999875433332 2221 11122222 2269999999997
Q ss_pred Chhhh--c-cccHHHHhcCCCCCEEEEc
Q 021995 184 TEKTR--G-MFDKDRIAKMKKGVLIVNN 208 (304)
Q Consensus 184 ~~~t~--~-~i~~~~l~~mk~g~ilVn~ 208 (304)
.-.-. . .++ ...++++.++.|+
T Consensus 201 Gm~~~~~~~~~~---~~~l~~~~~v~D~ 225 (283)
T COG0169 201 GMAGPEGDSPVP---AELLPKGAIVYDV 225 (283)
T ss_pred CCCCCCCCCCCc---HHhcCcCCEEEEe
Confidence 54332 1 233 4456666666665
No 258
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=97.00 E-value=0.019 Score=52.85 Aligned_cols=180 Identities=14% Similarity=0.132 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccC----CC-------eEE
Q 021995 76 VAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPF----NC-------NLL 144 (304)
Q Consensus 76 vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~----G~-------~V~ 144 (304)
+|--+++.+|+.+|- .+..|...+|.|+|.|..|-.+|+.+... |. +++
T Consensus 4 Ta~V~lAgllnAlk~--------------------~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~ 63 (279)
T cd05312 4 TAAVALAGLLAALRI--------------------TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIW 63 (279)
T ss_pred HHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEE
Confidence 455678888888873 24468899999999999999999998776 77 788
Q ss_pred EEcCCCC----C--h-----hHHHhcCceecCCHHhhcC--cCCEEEEcCCCChhhhccccHHHHhcCC---CCCEEEEc
Q 021995 145 YHDRVKM----D--P-----QLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFDKDRIAKMK---KGVLIVNN 208 (304)
Q Consensus 145 ~~dr~~~----~--~-----~~~~~~g~~~~~~l~ell~--~aDvVi~~~p~~~~t~~~i~~~~l~~mk---~g~ilVn~ 208 (304)
.+|+... . . +.++...-....+|.|+++ +.|+++=+.. .-+++.++.++.|. +..++.=.
T Consensus 64 ~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaL 139 (279)
T cd05312 64 LVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSG----VGGAFTEEVVRAMAKSNERPIIFAL 139 (279)
T ss_pred EEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCC----CCCCCCHHHHHHHHhcCCCCEEEEC
Confidence 9998631 0 0 1111111012358999999 8899875442 12789999999998 89999999
Q ss_pred CCCchhchHHHHHHHH--cCC-ceEEEeecCCCCCCCC------CCCccCCCCeEEccCCCcCCHHH-----HHHHHHHH
Q 021995 209 ARGAIMDTQAVVDACS--SGH-IAGYSGDVWNPQPAPK------DHPWRYMPNQAMTPHVSGTTIDA-----QLRYAAGV 274 (304)
Q Consensus 209 ~rg~~vd~~aL~~aL~--~g~-i~ga~lDV~~~ep~~~------~~~l~~~~nv~lTPHia~~t~e~-----~~~~~~~~ 274 (304)
|+....-|-.=.++++ +|+ |.+.+ -|+++ ....-+..|+++=|=++-..-.+ -+.|...+
T Consensus 140 SNPt~~~E~~pe~a~~~t~G~ai~ATG------sPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aA 213 (279)
T cd05312 140 SNPTSKAECTAEDAYKWTDGRALFASG------SPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAA 213 (279)
T ss_pred CCcCCccccCHHHHHHhhcCCEEEEeC------CCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHH
Confidence 9987744444444444 355 44322 23221 11112456788888775432211 13344445
Q ss_pred HHHHHHHHcCC
Q 021995 275 KDMLDRYFKGE 285 (304)
Q Consensus 275 ~~~l~~~~~g~ 285 (304)
.+.|-++..-+
T Consensus 214 A~aLA~~~~~~ 224 (279)
T cd05312 214 AEALASLVTDE 224 (279)
T ss_pred HHHHHHhCCcc
Confidence 55555554433
No 259
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=97.00 E-value=0.016 Score=54.93 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=82.9
Q ss_pred HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEee-ChhhHHHHHH
Q 021995 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGC-GRIGKLLLQR 135 (304)
Q Consensus 57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~-G~IG~~lA~~ 135 (304)
.++..+|+|.|.-+....++ .+|+=++.+.+++ | .+..+.|.+|+++|- .++.++++..
T Consensus 114 ~a~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~---------g---------~g~~l~glkv~~vGD~~~v~~Sl~~~ 173 (338)
T PRK02255 114 LAKYATVPVINGMSDYNHPT--QELGDLFTMIEHL---------P---------EGKKLEDCKVVFVGDATQVCVSLMFI 173 (338)
T ss_pred HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHHh---------C---------CCCCCCCCEEEEECCCchHHHHHHHH
Confidence 35567899999654332221 2333344443321 0 012588999999996 6789999999
Q ss_pred hccCCCeEEEEcCCCC-C-hhHH-------HhcC--ceecCCHHhhcCcCCEEEEcC-----CCC---hh------hhcc
Q 021995 136 LKPFNCNLLYHDRVKM-D-PQLE-------KETG--AKFEEDLDTMLPKCDIVVVNT-----PLT---EK------TRGM 190 (304)
Q Consensus 136 l~~~G~~V~~~dr~~~-~-~~~~-------~~~g--~~~~~~l~ell~~aDvVi~~~-----p~~---~~------t~~~ 190 (304)
+..+|++|.++.|... . .+.. +..| +...+++++.++++|+|..-. ... ++ -...
T Consensus 174 ~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~w~~~~~~~~~~~~r~~~~~~~y~ 253 (338)
T PRK02255 174 ATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDVWYGLYDAELSEEERMAIFYPKYQ 253 (338)
T ss_pred HHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcccHhhccchhhHHHHHHhhCCCce
Confidence 9999999999987642 2 1221 1224 445689999999999998833 110 00 0134
Q ss_pred ccHHHHhcCCCCCEEEEcC
Q 021995 191 FDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~ 209 (304)
++++.++.+|++++|..+.
T Consensus 254 v~~ell~~a~~~~ivmHpL 272 (338)
T PRK02255 254 VTPELMAKAGPHAKFMHCL 272 (338)
T ss_pred ECHHHHhccCCCCEEeCCC
Confidence 5677777777777666553
No 260
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.00 E-value=0.0017 Score=63.43 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=51.5
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-cCcee-------cCCHHhh-cCcCCEEEEcCCCChh
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKF-------EEDLDTM-LPKCDIVVVNTPLTEK 186 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-~g~~~-------~~~l~el-l~~aDvVi~~~p~~~~ 186 (304)
++|.|+|+|.+|+.+++.|...|++|+++++++...+..++ .++.. ...++++ +.++|.|+++++....
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~ 78 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET 78 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence 47999999999999999999999999999987654444433 33321 1234455 7889999999886543
No 261
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.99 E-value=0.0046 Score=60.80 Aligned_cols=114 Identities=14% Similarity=0.177 Sum_probs=72.5
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcC--CCC-h----h
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT--PLT-E----K 186 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~--p~~-~----~ 186 (304)
++.|++|.|+|+|..|..+|+.|+..|++|.++|..........+.|+.....-.+.+.++|+|+..- |.+ + .
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~ 85 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV 85 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence 47789999999999999999999999999999997543222233446543211123356899887642 321 1 1
Q ss_pred hh---c----cccH-HHHhc-C-----CCCCEEEEcCCCchhchHHHHHHHHcCC
Q 021995 187 TR---G----MFDK-DRIAK-M-----KKGVLIVNNARGAIMDTQAVVDACSSGH 227 (304)
Q Consensus 187 t~---~----~i~~-~~l~~-m-----k~g~ilVn~~rg~~vd~~aL~~aL~~g~ 227 (304)
.. . ++.+ +.+.. + +...+-|--+.|+.-...-|...|+...
T Consensus 86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g 140 (460)
T PRK01390 86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAG 140 (460)
T ss_pred HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence 11 1 1222 22222 2 3345667777899988888888887643
No 262
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.97 E-value=0.013 Score=55.01 Aligned_cols=95 Identities=9% Similarity=0.024 Sum_probs=70.3
Q ss_pred hhHHHHHHhccCCCeEEEEcCCCCChh-------HH-----------HhcC-------------ceecCC--HHhhcCcC
Q 021995 128 IGKLLLQRLKPFNCNLLYHDRVKMDPQ-------LE-----------KETG-------------AKFEED--LDTMLPKC 174 (304)
Q Consensus 128 IG~~lA~~l~~~G~~V~~~dr~~~~~~-------~~-----------~~~g-------------~~~~~~--l~ell~~a 174 (304)
||..+|..+...|++|..||+++...+ .. .+.| +....+ +.+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 689999999988999999999874210 00 0111 222222 55788999
Q ss_pred CEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHH
Q 021995 175 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS 224 (304)
Q Consensus 175 DvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~ 224 (304)
|+|+-++|.+.+.+..+-.+..+.++++++| ++.-+.+....|.+.+.
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~ 128 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVA 128 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcC
Confidence 9999999999998888877888889999999 55556667777777664
No 263
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.96 E-value=0.0041 Score=57.91 Aligned_cols=113 Identities=18% Similarity=0.245 Sum_probs=66.9
Q ss_pred CEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhH-HHh---c----C----ceecCCHHhhcCcCCEEEEcCC--
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKE---T----G----AKFEEDLDTMLPKCDIVVVNTP-- 182 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~-~~~---~----g----~~~~~~l~ell~~aDvVi~~~p-- 182 (304)
++|+|||.|.+|..+|..+...|. +|..+|++...... ..+ . + +....+. +.+++||+|+++..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~p 81 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGVP 81 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCCC
Confidence 589999999999999999887654 99999986543211 111 0 1 1122355 45789999999863
Q ss_pred CChh---------hhccccHHHH---hcCCCCCEEEEcCCCchhchHHHHHH--HHcCCceEEE
Q 021995 183 LTEK---------TRGMFDKDRI---AKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGYS 232 (304)
Q Consensus 183 ~~~~---------t~~~i~~~~l---~~mk~g~ilVn~~rg~~vd~~aL~~a--L~~g~i~ga~ 232 (304)
..+. +..++ .+.+ ....+++++|+.+...-+-...+.+. +...++.|.+
T Consensus 82 ~~~~~~r~~~~~~n~~i~-~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~g 144 (307)
T PRK06223 82 RKPGMSRDDLLGINAKIM-KDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMA 144 (307)
T ss_pred CCcCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeC
Confidence 2211 11111 2222 22346788888876554444444442 2234566654
No 264
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=96.95 E-value=0.0023 Score=58.49 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=62.6
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceecCC---HHh----hc--CcCCEEEEcCCCCh
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEED---LDT----ML--PKCDIVVVNTPLTE 185 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~~~---l~e----ll--~~aDvVi~~~p~~~ 185 (304)
.|++|.|+|.|.+|..+++.++.+|.+ |++.++++.+.+.++++|+..+-+ ..+ +. ...|+++-++....
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~ 199 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATA 199 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChH
Confidence 688999999999999999999999997 888887766666777777643211 111 11 24788877764322
Q ss_pred hhhccccHHHHhcCCCCCEEEEcC
Q 021995 186 KTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 186 ~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
. -.+.++.++++..++.++
T Consensus 200 ~-----~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 200 A-----VRACLESLDVGGTAVLAG 218 (280)
T ss_pred H-----HHHHHHHhcCCCEEEEec
Confidence 1 145567778888888776
No 265
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.94 E-value=0.0045 Score=58.89 Aligned_cols=95 Identities=16% Similarity=0.196 Sum_probs=60.3
Q ss_pred CEEEEEee-ChhhHHHHHHhccC-CCeEE-EEcCCCCChh-HHHhcC----c--eecC--CHHhhcCcCCEEEEcCCCCh
Q 021995 118 KTVGTVGC-GRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETG----A--KFEE--DLDTMLPKCDIVVVNTPLTE 185 (304)
Q Consensus 118 ~~vgIIG~-G~IG~~lA~~l~~~-G~~V~-~~dr~~~~~~-~~~~~g----~--~~~~--~l~ell~~aDvVi~~~p~~~ 185 (304)
++|+|+|. |.+|+.+++.|... ++++. .+++.....+ ....++ . ..+. +.++++.++|++++|+|...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 47999998 99999999999876 77877 4454331111 111111 0 0112 45666678999999999542
Q ss_pred hhhccccHHHHhcC-CCCCEEEEcCCCchhchHH
Q 021995 186 KTRGMFDKDRIAKM-KKGVLIVNNARGAIMDTQA 218 (304)
Q Consensus 186 ~t~~~i~~~~l~~m-k~g~ilVn~~rg~~vd~~a 218 (304)
. .+....+ +.|..+||.|..--.+..+
T Consensus 81 s------~~~~~~~~~~G~~VIDlS~~fR~~~~~ 108 (346)
T TIGR01850 81 S------AELAPELLAAGVKVIDLSADFRLKDPE 108 (346)
T ss_pred H------HHHHHHHHhCCCEEEeCChhhhcCChh
Confidence 2 3333333 5789999999655555433
No 266
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.94 E-value=0.00032 Score=62.10 Aligned_cols=121 Identities=16% Similarity=0.142 Sum_probs=73.3
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc-----------C------------------ceecC
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-----------G------------------AKFEE 165 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~-----------g------------------~~~~~ 165 (304)
..-+.|+|||.|.||+.+|+.....|+.|+.+|++......+.+. + ++...
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence 345689999999999999999999999999999976433322210 0 11124
Q ss_pred CHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEE-EcCCCchhchHHHHHHHHcCCceEEEeecCCCC
Q 021995 166 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ 239 (304)
Q Consensus 166 ~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilV-n~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~e 239 (304)
++.++++.+|+|+=+.--+.+.+.-+-++.=..+|+.+++. |++ .+...++..+++.... .++|--|.+-
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTS---Sl~lt~ia~~~~~~sr-f~GlHFfNPv 159 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTS---SLSLTDIASATQRPSR-FAGLHFFNPV 159 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeeccc---ceeHHHHHhhccChhh-hceeeccCCc
Confidence 45566777777765554332222222223333457777775 333 3445566666655443 3677766543
No 267
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.92 E-value=0.0034 Score=59.09 Aligned_cols=116 Identities=16% Similarity=0.256 Sum_probs=70.4
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChh-HHH----h---cC----ceecCCHHhhcCcCCEEEEcC
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEK----E---TG----AKFEEDLDTMLPKCDIVVVNT 181 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~-~~~----~---~g----~~~~~~l~ell~~aDvVi~~~ 181 (304)
+..++|+|||.|.+|..+|..+...|. +|+.+|.++.... ... . .+ +....+. +.+++||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 345799999999999999998877774 8999998764321 011 0 11 2223466 4679999999976
Q ss_pred CCC--h--------------hhhccccHHH---HhcCCCCCEEEEcCCCchhchHHHHHHHH--cCCceEEE
Q 021995 182 PLT--E--------------KTRGMFDKDR---IAKMKKGVLIVNNARGAIMDTQAVVDACS--SGHIAGYS 232 (304)
Q Consensus 182 p~~--~--------------~t~~~i~~~~---l~~mk~g~ilVn~~rg~~vd~~aL~~aL~--~g~i~ga~ 232 (304)
-.. + .+..++ .+. +....|.+++|+++...-+-...+.+... ..++.|.+
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~-~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIM-DEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 321 1 111111 122 23335778999998655444555544332 34566655
No 268
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.91 E-value=0.002 Score=56.50 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=33.9
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCC
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV 149 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~ 149 (304)
..|.+++|.|+|+|.+|..+++.|...|. +++.+|+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46899999999999999999999999998 68999876
No 269
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.91 E-value=0.0023 Score=50.43 Aligned_cols=85 Identities=24% Similarity=0.294 Sum_probs=57.3
Q ss_pred EEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec----CCH---Hh-hcCcCCEEEEcCCCChhhhccc
Q 021995 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDL---DT-MLPKCDIVVVNTPLTEKTRGMF 191 (304)
Q Consensus 120 vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~----~~l---~e-ll~~aDvVi~~~p~~~~t~~~i 191 (304)
|.|+|+|.+|+.+++.|+..+.+|+++++++...+.+.+.|+... .+. ++ -++++|.++++.+....+ +.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n--~~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEEN--LL 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHH--HH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHH--HH
Confidence 579999999999999999977799999987755566666664321 122 22 357899999998855443 33
Q ss_pred cHHHHhcCCCCCEEE
Q 021995 192 DKDRIAKMKKGVLIV 206 (304)
Q Consensus 192 ~~~~l~~mk~g~ilV 206 (304)
-...++.+-+...+|
T Consensus 79 ~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 79 IALLARELNPDIRII 93 (116)
T ss_dssp HHHHHHHHTTTSEEE
T ss_pred HHHHHHHHCCCCeEE
Confidence 245555555555554
No 270
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.89 E-value=0.002 Score=64.09 Aligned_cols=113 Identities=18% Similarity=0.232 Sum_probs=72.2
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecC--CHHhhcCcCCEEEEcCCCChhhh----
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE--DLDTMLPKCDIVVVNTPLTEKTR---- 188 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~--~l~ell~~aDvVi~~~p~~~~t~---- 188 (304)
+.|++|.|+|+|.+|.+.++.|+..|++|+++|..+...+.+++.|+.... ...+.++++|+|+.+-.-.+...
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~ 89 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA 89 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence 478999999999999999999999999999999754333334445664431 23456778998887642222111
Q ss_pred ------ccccHHHHh-cC--------CCCCEEEEcCCCchhchHHHHHHHHcCC
Q 021995 189 ------GMFDKDRIA-KM--------KKGVLIVNNARGAIMDTQAVVDACSSGH 227 (304)
Q Consensus 189 ------~~i~~~~l~-~m--------k~g~ilVn~~rg~~vd~~aL~~aL~~g~ 227 (304)
.++.+-.+. .+ +...+-|--+-|+.-...-+.+.|+...
T Consensus 90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g 143 (488)
T PRK03369 90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAG 143 (488)
T ss_pred HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 122222221 11 1124455556788888887888887643
No 271
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=96.88 E-value=0.0018 Score=63.28 Aligned_cols=107 Identities=13% Similarity=0.022 Sum_probs=67.3
Q ss_pred CEEEEEeeChhhHHHHH---Hh---ccCCCeEEEEcCCCCChhHHHh--------c----CceecCCHHhhcCcCCEEEE
Q 021995 118 KTVGTVGCGRIGKLLLQ---RL---KPFNCNLLYHDRVKMDPQLEKE--------T----GAKFEEDLDTMLPKCDIVVV 179 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~---~l---~~~G~~V~~~dr~~~~~~~~~~--------~----g~~~~~~l~ell~~aDvVi~ 179 (304)
.+|+|||.|.+|...+- .+ ...|.+|..||+++...+.... . .+....++++.++.||+|+.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 37999999999998554 22 3447799999997643322111 1 12345688899999999999
Q ss_pred cCCCCh--h-hh--------c-------------c--------ccHHHHhcC---CCCCEEEEcCCCchhchHHHHHHHH
Q 021995 180 NTPLTE--K-TR--------G-------------M--------FDKDRIAKM---KKGVLIVNNARGAIMDTQAVVDACS 224 (304)
Q Consensus 180 ~~p~~~--~-t~--------~-------------~--------i~~~~l~~m---k~g~ilVn~~rg~~vd~~aL~~aL~ 224 (304)
+.|... . .+ + + +-.+..+.+ .|+++++|.+...-+-..++.+...
T Consensus 81 ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k~~~ 160 (423)
T cd05297 81 TIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTP 160 (423)
T ss_pred eeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHHhCC
Confidence 998310 0 00 0 0 111233333 3689999998777666666665543
No 272
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.87 E-value=0.0067 Score=54.96 Aligned_cols=88 Identities=18% Similarity=0.335 Sum_probs=60.9
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHh
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA 197 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~ 197 (304)
.++-|+|.|.+++.+++.++.+|++|+++|..+. .. ....+..++.+....| .+.+.
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~---~~----------~~~~~~~~~~~~~~~~----------~~~~~ 157 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA---EF----------PEDLPDGVATLVTDEP----------EAEVA 157 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc---cc----------cccCCCCceEEecCCH----------HHHHh
Confidence 4899999999999999999999999999997542 00 0011234443332222 23333
Q ss_pred cCCCCCEEEEcCCCchhchHHHHHHHHcCCc
Q 021995 198 KMKKGVLIVNNARGAIMDTQAVVDACSSGHI 228 (304)
Q Consensus 198 ~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i 228 (304)
.+.++..+|=+.++.-.|.+.|..+|.+...
T Consensus 158 ~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~ 188 (246)
T TIGR02964 158 EAPPGSYFLVLTHDHALDLELCHAALRRGDF 188 (246)
T ss_pred cCCCCcEEEEEeCChHHHHHHHHHHHhCCCC
Confidence 4567778888889999999999999854433
No 273
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=96.87 E-value=0.013 Score=55.39 Aligned_cols=132 Identities=14% Similarity=0.133 Sum_probs=82.4
Q ss_pred HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeC--hhhHHHHH
Q 021995 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCG--RIGKLLLQ 134 (304)
Q Consensus 57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G--~IG~~lA~ 134 (304)
.++..+|+|.|.-+....++ .+|+=++.+.+++ .+..+.|.+|++||-+ ++.++++.
T Consensus 117 ~a~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~-------------------g~~~l~g~~ia~vGD~~~~v~~Sl~~ 175 (336)
T PRK03515 117 LAEYAGVPVWNGLTNEFHPT--QLLADLLTMQEHL-------------------PGKAFNEMTLAYAGDARNNMGNSLLE 175 (336)
T ss_pred HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHHh-------------------CCCCcCCCEEEEeCCCcCcHHHHHHH
Confidence 45667899999754332221 2344444444321 0124789999999976 68999999
Q ss_pred HhccCCCeEEEEcCCCC-Chh--------HHHhcC--ceecCCHHhhcCcCCEEEEcCCCCh-------------hhhcc
Q 021995 135 RLKPFNCNLLYHDRVKM-DPQ--------LEKETG--AKFEEDLDTMLPKCDIVVVNTPLTE-------------KTRGM 190 (304)
Q Consensus 135 ~l~~~G~~V~~~dr~~~-~~~--------~~~~~g--~~~~~~l~ell~~aDvVi~~~p~~~-------------~t~~~ 190 (304)
.+..+|+++.++.|... +.+ .++..| +...+++++.++++|+|....=... .....
T Consensus 176 ~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd~W~sm~~~~~~~~er~~~~~~y~ 255 (336)
T PRK03515 176 AAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTDVWVSMGEPKEVWAERIALLRPYQ 255 (336)
T ss_pred HHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCcccCcchhHHHHHHHHhccCCc
Confidence 99999999999987542 221 122234 4456899999999999987521100 01123
Q ss_pred ccHHHHhcC-CCCCEEEEcC
Q 021995 191 FDKDRIAKM-KKGVLIVNNA 209 (304)
Q Consensus 191 i~~~~l~~m-k~g~ilVn~~ 209 (304)
++++.++.. |++++|..+.
T Consensus 256 v~~~lm~~a~k~~~ivmHcL 275 (336)
T PRK03515 256 VNSKMMQLTGNPQVKFLHCL 275 (336)
T ss_pred cCHHHHhcccCCCCEEECCC
Confidence 456666653 5666666553
No 274
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.86 E-value=0.038 Score=50.14 Aligned_cols=159 Identities=14% Similarity=0.107 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCC-----------eEE
Q 021995 76 VAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-----------NLL 144 (304)
Q Consensus 76 vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-----------~V~ 144 (304)
+|--+++.+|+.+|- .+..|...+|.|+|.|..|-.+|+.+...+. +++
T Consensus 4 TaaV~lAgllnAlk~--------------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~ 63 (254)
T cd00762 4 TASVAVAGLLAALKV--------------------TKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIW 63 (254)
T ss_pred hHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEE
Confidence 455678888888872 2346889999999999999999999987655 688
Q ss_pred EEcCCCC----C--h-hHHHh---c--CceecCCHHhhcC--cCCEEEEcCCCChhhhccccHHHHhcCC---CCCEEEE
Q 021995 145 YHDRVKM----D--P-QLEKE---T--GAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFDKDRIAKMK---KGVLIVN 207 (304)
Q Consensus 145 ~~dr~~~----~--~-~~~~~---~--g~~~~~~l~ell~--~aDvVi~~~p~~~~t~~~i~~~~l~~mk---~g~ilVn 207 (304)
.+|+... . . ...+. + ......+|.|+++ +.|+++=... ..+++.++.++.|. +..++.=
T Consensus 64 ~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFa 139 (254)
T cd00762 64 XVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSR----VGGAFTPEVIRAXAEINERPVIFA 139 (254)
T ss_pred EECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCC----CCCCCCHHHHHHHhhcCCCCEEEE
Confidence 8887631 0 0 00011 1 1122358999999 9999875432 23789999999998 8999999
Q ss_pred cCCCchhchHHHHHHHHc--C-CceEEEeecCCCCCCCCCC---CccCCCCeEEccCCCc
Q 021995 208 NARGAIMDTQAVVDACSS--G-HIAGYSGDVWNPQPAPKDH---PWRYMPNQAMTPHVSG 261 (304)
Q Consensus 208 ~~rg~~vd~~aL~~aL~~--g-~i~ga~lDV~~~ep~~~~~---~l~~~~nv~lTPHia~ 261 (304)
.|+....-|-.=.++.+- | .|.+-+. ...|..-+. ..-+..|+++=|=++-
T Consensus 140 LSNPt~~aE~tpe~a~~~t~G~ai~AtGs---pf~pv~~~g~~~~~~Q~NN~~iFPGigl 196 (254)
T cd00762 140 LSNPTSKAECTAEEAYTATEGRAIFASGS---PFHPVELNGGTYKPGQGNNLYIFPGVAL 196 (254)
T ss_pred CCCcCCccccCHHHHHhhcCCCEEEEECC---CCCCcccCCceeecccccceeeccchhh
Confidence 999887444333333333 3 3433222 111221111 1124568888887754
No 275
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.85 E-value=0.0037 Score=59.32 Aligned_cols=67 Identities=27% Similarity=0.314 Sum_probs=44.7
Q ss_pred CEEEEEeeChhhHHHHHHhcc-CCCeEEEE-cCCCCChh-HHHhc------------------CceecCCHHhhcCcCCE
Q 021995 118 KTVGTVGCGRIGKLLLQRLKP-FNCNLLYH-DRVKMDPQ-LEKET------------------GAKFEEDLDTMLPKCDI 176 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~-~G~~V~~~-dr~~~~~~-~~~~~------------------g~~~~~~l~ell~~aDv 176 (304)
.+|||+|+|.||+.+++.+.. -++++.+. ++++.... .++.. ++....++++++.++|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 389999999999999998874 47887655 43321111 11111 22233567788889999
Q ss_pred EEEcCCCC
Q 021995 177 VVVNTPLT 184 (304)
Q Consensus 177 Vi~~~p~~ 184 (304)
|+.|.|..
T Consensus 82 VIdaT~~~ 89 (341)
T PRK04207 82 VVDATPGG 89 (341)
T ss_pred EEECCCch
Confidence 99998743
No 276
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=96.85 E-value=0.0038 Score=58.54 Aligned_cols=90 Identities=16% Similarity=0.132 Sum_probs=67.3
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHH-hhcCcCCEEEEcCCCChhhhccccHH
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD-TMLPKCDIVVVNTPLTEKTRGMFDKD 194 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~-ell~~aDvVi~~~p~~~~t~~~i~~~ 194 (304)
.|.+|.|.|.|.+|..+++.++.+|++|++.++++.+.+.++++|+..+-+.. +.-...|+++.+.... . . -..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~-~~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---L-VPP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---H-HHH
Confidence 58899999999999999999999999999998887777888888875432211 1123468777665532 1 2 256
Q ss_pred HHhcCCCCCEEEEcCC
Q 021995 195 RIAKMKKGVLIVNNAR 210 (304)
Q Consensus 195 ~l~~mk~g~ilVn~~r 210 (304)
.++.++++..++.++.
T Consensus 240 ~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 240 ALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHhhCCCcEEEEEec
Confidence 7788999999988874
No 277
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.85 E-value=0.0082 Score=55.84 Aligned_cols=106 Identities=13% Similarity=0.193 Sum_probs=74.6
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhh-------
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR------- 188 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~------- 188 (304)
.|++++|||--.--..++++|.+.|++|.++.-... + -...|+...++.+++++++|+|++-.|.+.+..
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~--~-~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~ 77 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQL--D-HGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFS 77 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccc--c-cccCCceeeccHHHHhccCCEEEECCccccCCceeecccc
Confidence 378999999999999999999999999987653211 1 122366666678899999999999888653221
Q ss_pred ---ccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995 189 ---GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 229 (304)
Q Consensus 189 ---~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ 229 (304)
--++.+.+++|++++.++ ++.+..- +-+.+.+.++.
T Consensus 78 ~~~~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~ 116 (296)
T PRK08306 78 NEKLVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRK 116 (296)
T ss_pred ccCCcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCe
Confidence 113678999999998544 4443322 33556677776
No 278
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=96.82 E-value=0.0067 Score=57.64 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=73.7
Q ss_pred CEEEEEeeChhhHHHHHHhccC--CCeEE-EEcCCCCC-hhHHHhcCceecCCHHhhcCcCCEEEEcCCCC-hhhhcccc
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPF--NCNLL-YHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT-EKTRGMFD 192 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~--G~~V~-~~dr~~~~-~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~-~~t~~~i~ 192 (304)
.+|||||. .+|+..++.++.. +++++ ++|++... .+.++++|+..++++++++.+.|++++++|.+ +...|.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~-- 80 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGS-- 80 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHH--
Confidence 58999999 6799999888764 57755 67876543 34556678777789999999999999998742 221221
Q ss_pred HHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCceEE
Q 021995 193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 231 (304)
Q Consensus 193 ~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ga 231 (304)
+-..+.|+.|.-++.=---..-+.++|+++.++..+...
T Consensus 81 e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 81 ALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred HHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 233344555544443222224566778888887776633
No 279
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=96.82 E-value=0.019 Score=54.24 Aligned_cols=131 Identities=15% Similarity=0.188 Sum_probs=83.3
Q ss_pred HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeC--hhhHHHHH
Q 021995 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCG--RIGKLLLQ 134 (304)
Q Consensus 57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G--~IG~~lA~ 134 (304)
.++..+|+|.|.-+....++ .+|+=++.+.+++ .| .+.|++|++||-+ ++.++++.
T Consensus 117 ~a~~s~vPVINa~~~~~HPt--QaL~Dl~Ti~e~~-------------------~g-~l~g~kia~vGD~~~~v~~Sl~~ 174 (332)
T PRK04284 117 LAEYSGVPVWNGLTDEDHPT--QVLADFLTAKEHL-------------------KK-PYKDIKFTYVGDGRNNVANALMQ 174 (332)
T ss_pred HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHHh-------------------cC-CcCCcEEEEecCCCcchHHHHHH
Confidence 45667899999754433222 2344444444321 01 3789999999975 88999999
Q ss_pred HhccCCCeEEEEcCCCC-Chh-H-------HHhcC--ceecCCHHhhcCcCCEEEEcCCCC--h------h-----hhcc
Q 021995 135 RLKPFNCNLLYHDRVKM-DPQ-L-------EKETG--AKFEEDLDTMLPKCDIVVVNTPLT--E------K-----TRGM 190 (304)
Q Consensus 135 ~l~~~G~~V~~~dr~~~-~~~-~-------~~~~g--~~~~~~l~ell~~aDvVi~~~p~~--~------~-----t~~~ 190 (304)
.+..+|++|.+..|... +.+ . ++..| +....++++.++++|+|..-.=.. . + -...
T Consensus 175 ~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~y~ 254 (332)
T PRK04284 175 GAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDVWVSMGEPDEVWEERIKLLKPYQ 254 (332)
T ss_pred HHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECCcccCccchhhHHHHHHhccCCc
Confidence 99999999999987542 211 1 12344 345689999999999998752100 0 0 1223
Q ss_pred ccHHHHhcCC-CCCEEEEcC
Q 021995 191 FDKDRIAKMK-KGVLIVNNA 209 (304)
Q Consensus 191 i~~~~l~~mk-~g~ilVn~~ 209 (304)
++++.++.++ ++++|..+.
T Consensus 255 v~~e~l~~a~~~~~ivmHpl 274 (332)
T PRK04284 255 VNKEMMKKTGNPNAIFEHCL 274 (332)
T ss_pred CCHHHHhhcCCCCcEEECCC
Confidence 5667777775 477766654
No 280
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=96.81 E-value=0.0099 Score=55.47 Aligned_cols=96 Identities=21% Similarity=0.287 Sum_probs=67.3
Q ss_pred ccCCCEEEEEeeC---hhhHHHHHHhccCCCeEEEEcCCCC--Chh---HHHhcCc--eecCCHHhhcCcCCEEEEcCCC
Q 021995 114 DLEGKTVGTVGCG---RIGKLLLQRLKPFNCNLLYHDRVKM--DPQ---LEKETGA--KFEEDLDTMLPKCDIVVVNTPL 183 (304)
Q Consensus 114 ~L~g~~vgIIG~G---~IG~~lA~~l~~~G~~V~~~dr~~~--~~~---~~~~~g~--~~~~~l~ell~~aDvVi~~~p~ 183 (304)
.+.|.+|+++|-| ++.++++..+..+|++|.+..|... +.+ .+++.|. ...+++++.++++|+|....-.
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~~~ 226 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTRIQ 226 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECCcc
Confidence 4789999999985 9999999999999999999987653 222 1223353 3467999999999999774211
Q ss_pred C-----h-h-----hhccccHHHHhcCCCCCEEEEcC
Q 021995 184 T-----E-K-----TRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 184 ~-----~-~-----t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
. . + ...-++++.++.++++++|..+.
T Consensus 227 ~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHcl 263 (301)
T TIGR00670 227 KERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPL 263 (301)
T ss_pred ccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCC
Confidence 0 0 0 02235667777777777776554
No 281
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=96.81 E-value=0.003 Score=57.39 Aligned_cols=101 Identities=27% Similarity=0.233 Sum_probs=65.4
Q ss_pred cccccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhH------HHhcCceecCCHHhhcCcCCEEEEcCCC
Q 021995 111 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQL------EKETGAKFEEDLDTMLPKCDIVVVNTPL 183 (304)
Q Consensus 111 ~~~~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~------~~~~g~~~~~~l~ell~~aDvVi~~~p~ 183 (304)
.|.+|+..+++|+|+ |.||..+|+.|.+.++.....-|....... ..+.+.....+++..+.+.|+++-....
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~ 240 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASM 240 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeec
Confidence 467899999999996 999999999999988886666543321111 1122333334566555555555433221
Q ss_pred ChhhhccccHHHHhcCCCCCEEEEcCCCchhch
Q 021995 184 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDT 216 (304)
Q Consensus 184 ~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~ 216 (304)
.+-..|+.+. +|||+.+||-++..=+|+
T Consensus 241 --~~g~~I~pq~---lkpg~~ivD~g~P~dvd~ 268 (351)
T COG5322 241 --PKGVEIFPQH---LKPGCLIVDGGYPKDVDT 268 (351)
T ss_pred --CCCceechhh---ccCCeEEEcCCcCccccc
Confidence 1234555554 699999999998775544
No 282
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.80 E-value=0.0064 Score=56.85 Aligned_cols=93 Identities=20% Similarity=0.277 Sum_probs=64.1
Q ss_pred ccCCCEEEEEee---ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh----
Q 021995 114 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK---- 186 (304)
Q Consensus 114 ~L~g~~vgIIG~---G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~---- 186 (304)
.+.|++|+++|- +++.++++..+..+|++|.+..|....++... .....+++++.++++|+|....-..+.
T Consensus 153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~--~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~ 230 (305)
T PRK00856 153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMP--EYGVHTDLDEVIEDADVVMMLRVQKERMDGG 230 (305)
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCccccc--ceEEECCHHHHhCCCCEEEECCccccccccc
Confidence 478999999997 58999999999999999999987542221111 135568999999999999775411000
Q ss_pred ----h-----hccccHHHHhcCCCCCEEEEc
Q 021995 187 ----T-----RGMFDKDRIAKMKKGVLIVNN 208 (304)
Q Consensus 187 ----t-----~~~i~~~~l~~mk~g~ilVn~ 208 (304)
. ...++++.++.+|++++|..+
T Consensus 231 ~~~~~~~~~~~y~v~~~ll~~a~~~~~~mHc 261 (305)
T PRK00856 231 LLPSYEEYKRSYGLTAERLALAKPDAIVMHP 261 (305)
T ss_pred chHHHHHHhccCccCHHHHhhcCCCCEEECC
Confidence 0 123566666666666666544
No 283
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=96.78 E-value=0.0068 Score=56.42 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=60.2
Q ss_pred CCEEEEEeeChhhHHHHHHhcc-CCCeEE-EEcCCCCCh--hHHHhcCcee-cCCHHhhcC-----cCCEEEEcCCCChh
Q 021995 117 GKTVGTVGCGRIGKLLLQRLKP-FNCNLL-YHDRVKMDP--QLEKETGAKF-EEDLDTMLP-----KCDIVVVNTPLTEK 186 (304)
Q Consensus 117 g~~vgIIG~G~IG~~lA~~l~~-~G~~V~-~~dr~~~~~--~~~~~~g~~~-~~~l~ell~-----~aDvVi~~~p~~~~ 186 (304)
..++||||.|+||+.+...+.. -++++. ++|+++... ..++++|+.. +++++++++ +.|+|+.++|....
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H 83 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH 83 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence 4589999999999997766654 467755 667765432 4566678754 468888884 58889999985322
Q ss_pred hhccccHHHHhcCCCCCEEEEcC
Q 021995 187 TRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 187 t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
. +......+.|..+|+-+
T Consensus 84 ~-----e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 84 V-----RHAAKLREAGIRAIDLT 101 (302)
T ss_pred H-----HHHHHHHHcCCeEEECC
Confidence 1 22233356788888876
No 284
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=96.78 E-value=0.026 Score=53.33 Aligned_cols=130 Identities=17% Similarity=0.230 Sum_probs=82.1
Q ss_pred HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeC--hhhHHHHH
Q 021995 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCG--RIGKLLLQ 134 (304)
Q Consensus 57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G--~IG~~lA~ 134 (304)
.++..+|+|.|.-+....++ .+|+=++.+.+++ | .+.|++|++||-+ ++.++++.
T Consensus 118 ~a~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~--------------------g-~l~g~~va~vGd~~~~v~~Sl~~ 174 (331)
T PRK02102 118 LAKYSGVPVWNGLTDEWHPT--QMLADFMTMKEHF--------------------G-PLKGLKLAYVGDGRNNMANSLMV 174 (331)
T ss_pred HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHHh--------------------C-CCCCCEEEEECCCcccHHHHHHH
Confidence 45567899999855332221 2333344443311 1 3789999999987 79999999
Q ss_pred HhccCCCeEEEEcCCCC-Chh--------HHHhcCc--eecCCHHhhcCcCCEEEEcCCC--C-----hh-----hhccc
Q 021995 135 RLKPFNCNLLYHDRVKM-DPQ--------LEKETGA--KFEEDLDTMLPKCDIVVVNTPL--T-----EK-----TRGMF 191 (304)
Q Consensus 135 ~l~~~G~~V~~~dr~~~-~~~--------~~~~~g~--~~~~~l~ell~~aDvVi~~~p~--~-----~~-----t~~~i 191 (304)
.+..+|++|.+..|... ..+ .++..|. ...++++++++++|+|..-+=. . ++ ...-+
T Consensus 175 ~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~w~~~~~~~~~~~~~~~~~~y~v 254 (331)
T PRK02102 175 GGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTDVWVSMGEEDEWEERIKLLKPYQV 254 (331)
T ss_pred HHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCcccCccccchHHHHHhccCCcC
Confidence 99999999999987542 221 1223343 3457899999999999875311 0 00 11235
Q ss_pred cHHHHh-cCCCCCEEEEcC
Q 021995 192 DKDRIA-KMKKGVLIVNNA 209 (304)
Q Consensus 192 ~~~~l~-~mk~g~ilVn~~ 209 (304)
+++.++ .+|++++|..+.
T Consensus 255 t~ell~~~~~~d~ivmH~l 273 (331)
T PRK02102 255 NMDLMKATGNPDVIFMHCL 273 (331)
T ss_pred CHHHHhhhcCCCCEEECCC
Confidence 666666 367777766553
No 285
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.76 E-value=0.0097 Score=55.17 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=49.2
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCC---Chh-HHHhcCc-----eecCCH------HhhcCcCCE
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKM---DPQ-LEKETGA-----KFEEDL------DTMLPKCDI 176 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~---~~~-~~~~~g~-----~~~~~l------~ell~~aDv 176 (304)
..+.|+++.|+|.|..+++++..|...|+ +|++++|+.. +.+ .+...+. ....++ .+.+.++|+
T Consensus 120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDi 199 (288)
T PRK12749 120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADI 199 (288)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCE
Confidence 45789999999999999999998888887 6999999853 221 2222211 011222 234567899
Q ss_pred EEEcCCCC
Q 021995 177 VVVNTPLT 184 (304)
Q Consensus 177 Vi~~~p~~ 184 (304)
|+.++|..
T Consensus 200 vINaTp~G 207 (288)
T PRK12749 200 LTNGTKVG 207 (288)
T ss_pred EEECCCCC
Confidence 99988853
No 286
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.76 E-value=0.0025 Score=60.39 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=34.2
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCC
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK 150 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~ 150 (304)
..|.+++|.|||+|.+|..+|+.|...|. ++.++|+..
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 46899999999999999999999999998 688888863
No 287
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.74 E-value=0.027 Score=52.81 Aligned_cols=67 Identities=16% Similarity=0.200 Sum_probs=51.5
Q ss_pred ccCCCEEEEEee---ChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEc
Q 021995 114 DLEGKTVGTVGC---GRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVN 180 (304)
Q Consensus 114 ~L~g~~vgIIG~---G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~ 180 (304)
.+.|.+|+++|- +++.++++..+..+|+ +|.+..|....++......+...+++++.++++|+|...
T Consensus 154 ~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~~ 224 (310)
T PRK13814 154 HWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVTL 224 (310)
T ss_pred CcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEEC
Confidence 378999999997 6999999999999999 899988754222211112345568999999999999773
No 288
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.74 E-value=0.0036 Score=63.85 Aligned_cols=92 Identities=21% Similarity=0.221 Sum_probs=65.7
Q ss_pred CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec----CCHH---h-hcCcCCEEEEcCCCChhhh
Q 021995 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLD---T-MLPKCDIVVVNTPLTEKTR 188 (304)
Q Consensus 117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~----~~l~---e-ll~~aDvVi~~~p~~~~t~ 188 (304)
..+|.|+|+|++|+.+++.|...|.++++.|.++...+..++.|...+ .+.+ + -+++||.++++.+..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 457999999999999999999999999999998766666666664321 2222 2 2678999999999776654
Q ss_pred ccccHHHHhcCCCCCEEEEcCC
Q 021995 189 GMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 189 ~~i~~~~l~~mk~g~ilVn~~r 210 (304)
.++ ...+.+.|...+|--+|
T Consensus 480 ~i~--~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 480 KIV--ELCQQHFPHLHILARAR 499 (601)
T ss_pred HHH--HHHHHHCCCCeEEEEeC
Confidence 442 34455556655655443
No 289
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=96.73 E-value=0.037 Score=52.39 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=84.3
Q ss_pred HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeC--hhhHHHHH
Q 021995 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCG--RIGKLLLQ 134 (304)
Q Consensus 57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G--~IG~~lA~ 134 (304)
.++..+|+|.|.-+....++ .+|+=++.+.+++ .+..+.|.+|++||-+ ++.++++.
T Consensus 117 ~a~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~-------------------g~~~l~gl~va~vGD~~~~v~~S~~~ 175 (334)
T PRK12562 117 LAEYAGVPVWNGLTNEFHPT--QLLADLLTMQEHL-------------------PGKAFNEMTLVYAGDARNNMGNSMLE 175 (334)
T ss_pred HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHHh-------------------CCCCcCCcEEEEECCCCCCHHHHHHH
Confidence 45667899999865433332 2344444444321 1124789999999975 78999999
Q ss_pred HhccCCCeEEEEcCCCC-Chh-H-------HHhcC--ceecCCHHhhcCcCCEEEEcCC----C-Ch---h-----hhcc
Q 021995 135 RLKPFNCNLLYHDRVKM-DPQ-L-------EKETG--AKFEEDLDTMLPKCDIVVVNTP----L-TE---K-----TRGM 190 (304)
Q Consensus 135 ~l~~~G~~V~~~dr~~~-~~~-~-------~~~~g--~~~~~~l~ell~~aDvVi~~~p----~-~~---~-----t~~~ 190 (304)
.+..+|++|.+..|... +.+ . ++..| +...+++++.++++|+|....= . .+ + -..-
T Consensus 176 ~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~w~sm~~~~~~~~~~~~~~~~y~ 255 (334)
T PRK12562 176 AAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDVWVSMGEPKEKWAERIALLRGYQ 255 (334)
T ss_pred HHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCccccccchhhHHHHHHhccCCc
Confidence 99999999999887542 211 1 12234 3446799999999999987541 0 00 0 1223
Q ss_pred ccHHHHhcC-CCCCEEEEcC
Q 021995 191 FDKDRIAKM-KKGVLIVNNA 209 (304)
Q Consensus 191 i~~~~l~~m-k~g~ilVn~~ 209 (304)
++++.++.. +++++|..+.
T Consensus 256 v~~ell~~a~~~~~i~mHcL 275 (334)
T PRK12562 256 VNSKMMALTGNPQVKFLHCL 275 (334)
T ss_pred CCHHHHHhhcCCCCEEECCC
Confidence 567777774 6777777664
No 290
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=96.73 E-value=0.0062 Score=55.00 Aligned_cols=91 Identities=13% Similarity=0.190 Sum_probs=72.5
Q ss_pred hHHHHHHhccCCCeEEEEcCCCCC--h---hHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCC
Q 021995 129 GKLLLQRLKPFNCNLLYHDRVKMD--P---QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 203 (304)
Q Consensus 129 G~~lA~~l~~~G~~V~~~dr~~~~--~---~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ 203 (304)
|..+|-.+...|+.|+..+|+..- . +...+.|++.+++-.+..+.+.+.++..|....|.++. ++.+..++.|+
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence 667888888889999999987632 2 22345688887777789999999999999998887775 78999999999
Q ss_pred EEEEcCCCchhchHHHHHHH
Q 021995 204 LIVNNARGAIMDTQAVVDAC 223 (304)
Q Consensus 204 ilVn~~rg~~vd~~aL~~aL 223 (304)
++.|+..-+.+ .|+..|
T Consensus 112 VicnTCT~sp~---vLy~~L 128 (340)
T COG4007 112 VICNTCTVSPV---VLYYSL 128 (340)
T ss_pred EecccccCchh---HHHHHh
Confidence 99999876544 455555
No 291
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=96.70 E-value=0.0032 Score=59.63 Aligned_cols=63 Identities=22% Similarity=0.385 Sum_probs=47.5
Q ss_pred CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH-HhcCc-eec---CCHHhhcCcCCEEEE
Q 021995 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGA-KFE---EDLDTMLPKCDIVVV 179 (304)
Q Consensus 117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-~~~g~-~~~---~~l~ell~~aDvVi~ 179 (304)
+++|||||-|-.|+.++.....+|++|++.|+++..+... .+.-+ ..+ ..+.++.+.||+|..
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 4799999999999999999999999999999877543221 11111 112 257789999999976
No 292
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.69 E-value=0.0042 Score=57.94 Aligned_cols=92 Identities=18% Similarity=0.204 Sum_probs=58.6
Q ss_pred CEEEEEeeChhhHHHHHHhccCC--CeEEEEcCCCCChhH-HHhc-------Cc--e-ecCCHHhhcCcCCEEEEcCCCC
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQL-EKET-------GA--K-FEEDLDTMLPKCDIVVVNTPLT 184 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~~-~~~~-------g~--~-~~~~l~ell~~aDvVi~~~p~~ 184 (304)
++|+|||.|.+|+.+|..|...| .+|..+|++....+. +.++ +. . ...+. +.+++||+|+++....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~~aDIVIitag~~ 79 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhCCCCEEEEccCCC
Confidence 48999999999999999998888 479999997643321 1111 11 1 12234 4578999999987642
Q ss_pred hh---hh--------cccc--HHHHhcCCCCCEEEEcCC
Q 021995 185 EK---TR--------GMFD--KDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 185 ~~---t~--------~~i~--~~~l~~mk~g~ilVn~~r 210 (304)
.. ++ .++. .+.+....+.+++++++.
T Consensus 80 ~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN 118 (306)
T cd05291 80 QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118 (306)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 11 11 1110 112334467889999873
No 293
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.68 E-value=0.0055 Score=56.95 Aligned_cols=111 Identities=19% Similarity=0.293 Sum_probs=63.8
Q ss_pred EEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChh-----HHHh---cC----ceecCCHHhhcCcCCEEEEcCCC--C
Q 021995 120 VGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----LEKE---TG----AKFEEDLDTMLPKCDIVVVNTPL--T 184 (304)
Q Consensus 120 vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~-----~~~~---~g----~~~~~~l~ell~~aDvVi~~~p~--~ 184 (304)
|+|||.|.||..+|..+...|. +|+.+|+++.... .... .+ +....+.+ .+++||+|+++... .
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~-~l~dADiVIit~g~p~~ 79 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYE-DIAGSDVVVITAGIPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHH-HhCCCCEEEEecCCCCC
Confidence 6899999999999998876554 9999998754221 0000 01 12224554 58999999997632 1
Q ss_pred h---------hhhccccHHH---HhcCCCCCEEEEcCCCchhchHHHHHHH--HcCCceEEE
Q 021995 185 E---------KTRGMFDKDR---IAKMKKGVLIVNNARGAIMDTQAVVDAC--SSGHIAGYS 232 (304)
Q Consensus 185 ~---------~t~~~i~~~~---l~~mk~g~ilVn~~rg~~vd~~aL~~aL--~~g~i~ga~ 232 (304)
+ .+..++ .+. +....+++++|+.+...-+-...+.+.. ...++.|.+
T Consensus 80 ~~~~r~e~~~~n~~i~-~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg 140 (300)
T cd01339 80 PGMSRDDLLGTNAKIV-KEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA 140 (300)
T ss_pred cCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec
Confidence 1 111111 122 2334567888888855444444444432 223455555
No 294
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.68 E-value=0.034 Score=49.58 Aligned_cols=93 Identities=19% Similarity=0.230 Sum_probs=59.4
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCCh-------------------hHH----HhcC----cee-
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------QLE----KETG----AKF- 163 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~-------------------~~~----~~~g----~~~- 163 (304)
..|..++|.|+|+|.+|..+|+.|...|. +++.+|...... +.+ ++.. ++.
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 46899999999999999999999999998 477776542100 000 0110 111
Q ss_pred -----cCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcC
Q 021995 164 -----EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 164 -----~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
.++++++++++|+|+.|+. +..++..+++...+ .+.-+|+++
T Consensus 97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g 143 (228)
T cd00757 97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA 143 (228)
T ss_pred cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence 1234567888999888865 45566666544443 344566664
No 295
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.68 E-value=0.0037 Score=60.25 Aligned_cols=100 Identities=15% Similarity=0.065 Sum_probs=64.2
Q ss_pred cCCCEEEEEee-ChhhHHHHHHhccC-CCeEEEEcCCCCChhHHHhcC-------ceecCCHH-hhcCcCCEEEEcCCCC
Q 021995 115 LEGKTVGTVGC-GRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETG-------AKFEEDLD-TMLPKCDIVVVNTPLT 184 (304)
Q Consensus 115 L~g~~vgIIG~-G~IG~~lA~~l~~~-G~~V~~~dr~~~~~~~~~~~g-------~~~~~~l~-ell~~aDvVi~~~p~~ 184 (304)
...++|+|+|. |.+|+.+.+.|... +++|..+.+.....+...... .....+++ +.++++|+|++++|..
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 35569999996 99999999999876 778887765332211111101 11112222 2258899999999953
Q ss_pred hhhhccccHHHHhcCCCCCEEEEcCCCchhchHHHH
Q 021995 185 EKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV 220 (304)
Q Consensus 185 ~~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~ 220 (304)
...+..+.|+.|..+||.+..--.+.++.+
T Consensus 116 ------~s~~i~~~~~~g~~VIDlSs~fRl~~~~~y 145 (381)
T PLN02968 116 ------TTQEIIKALPKDLKIVDLSADFRLRDIAEY 145 (381)
T ss_pred ------HHHHHHHHHhCCCEEEEcCchhccCCcccc
Confidence 224555556788999999976666555433
No 296
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=96.67 E-value=0.014 Score=57.88 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=69.6
Q ss_pred ccCCCEEEEEee----------ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc----------------------Cc
Q 021995 114 DLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----------------------GA 161 (304)
Q Consensus 114 ~L~g~~vgIIG~----------G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~----------------------g~ 161 (304)
.+.|++|+|+|+ ..-...+++.|...|.+|.+||+.-...+....+ .+
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 588999999997 5578899999999999999999863221111111 12
Q ss_pred eecCCHHhhcCcCCEEEEcCCCChhhhccccH-HHHhcCCCCCEEEEcCCCchhchHHH
Q 021995 162 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK-DRIAKMKKGVLIVNNARGAIMDTQAV 219 (304)
Q Consensus 162 ~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~-~~l~~mk~g~ilVn~~rg~~vd~~aL 219 (304)
....++++.++++|+|+++....+ .+. ++- +..+.|++..+++|. |+- +|.+.+
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~e-f~~-l~~~~~~~~m~~~~~viD~-rn~-l~~~~~ 455 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWDE-FKT-LDYQKIYDNMQKPAFVFDG-RNV-LDHEKL 455 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCChH-hcc-cCHHHHHHhccCCCEEEEC-CCC-CCHHHH
Confidence 445567789999999999988543 223 333 335667766688885 443 354444
No 297
>PLN02342 ornithine carbamoyltransferase
Probab=96.67 E-value=0.055 Score=51.51 Aligned_cols=130 Identities=12% Similarity=0.093 Sum_probs=83.8
Q ss_pred HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEee-ChhhHHHHHH
Q 021995 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGC-GRIGKLLLQR 135 (304)
Q Consensus 57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~-G~IG~~lA~~ 135 (304)
.++..+++|.|.-+....++ .+|+-++.+.+++ | .+.|++|+++|- .++.++++..
T Consensus 157 la~~~~vPVINA~~~~~HPt--QaLaDl~Ti~e~~--------------------G-~l~glkva~vGD~~nva~Sli~~ 213 (348)
T PLN02342 157 LAEYSSVPVINGLTDYNHPC--QIMADALTIIEHI--------------------G-RLEGTKVVYVGDGNNIVHSWLLL 213 (348)
T ss_pred HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHHh--------------------C-CcCCCEEEEECCCchhHHHHHHH
Confidence 45667899999855332221 2344444443321 1 478999999996 4688888899
Q ss_pred hccCCCeEEEEcCCCC-Chh-H---HHhcC---ceecCCHHhhcCcCCEEEEcC----CCChh--------hhccccHHH
Q 021995 136 LKPFNCNLLYHDRVKM-DPQ-L---EKETG---AKFEEDLDTMLPKCDIVVVNT----PLTEK--------TRGMFDKDR 195 (304)
Q Consensus 136 l~~~G~~V~~~dr~~~-~~~-~---~~~~g---~~~~~~l~ell~~aDvVi~~~----p~~~~--------t~~~i~~~~ 195 (304)
+..+|++|.+..|... +.+ . +++.| +...+++++.++++|+|.... ...+. ....++++.
T Consensus 214 ~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s~~~~e~~~~~~~~~~~y~vt~el 293 (348)
T PLN02342 214 AAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASMGQKEEAEKRKKAFQGFQVNEAL 293 (348)
T ss_pred HHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccccccchhhHHHHHhccCCccCHHH
Confidence 9999999999987642 221 1 22233 345689999999999998763 11111 113467777
Q ss_pred HhcCCCCCEEEEcC
Q 021995 196 IAKMKKGVLIVNNA 209 (304)
Q Consensus 196 l~~mk~g~ilVn~~ 209 (304)
++.+|++++|..+.
T Consensus 294 l~~ak~~aivMHpL 307 (348)
T PLN02342 294 MKLAGPQAYFMHCL 307 (348)
T ss_pred HhccCCCcEEeCCC
Confidence 77778777776553
No 298
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.66 E-value=0.0078 Score=57.17 Aligned_cols=95 Identities=22% Similarity=0.304 Sum_probs=58.7
Q ss_pred CEEEEEee-ChhhHHHHHHhccC-CCeEEE-EcCCCCChhHHHhcC-ce-----ecCCHHh-hcCcCCEEEEcCCCChhh
Q 021995 118 KTVGTVGC-GRIGKLLLQRLKPF-NCNLLY-HDRVKMDPQLEKETG-AK-----FEEDLDT-MLPKCDIVVVNTPLTEKT 187 (304)
Q Consensus 118 ~~vgIIG~-G~IG~~lA~~l~~~-G~~V~~-~dr~~~~~~~~~~~g-~~-----~~~~l~e-ll~~aDvVi~~~p~~~~t 187 (304)
++|+|+|. |.+|+.+++.|... ++++.+ +++...........+ .. .++++++ ...++|+|++|+|....
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~- 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS- 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH-
Confidence 58999996 99999999999876 678654 554322111111111 10 1223332 45789999999996432
Q ss_pred hccccHHHHh-cCCCCCEEEEcCCCchhchHH
Q 021995 188 RGMFDKDRIA-KMKKGVLIVNNARGAIMDTQA 218 (304)
Q Consensus 188 ~~~i~~~~l~-~mk~g~ilVn~~rg~~vd~~a 218 (304)
.+... .++.|..+||.|-.--.+..+
T Consensus 82 -----~~~v~~a~~aG~~VID~S~~fR~~~~~ 108 (343)
T PRK00436 82 -----MDLAPQLLEAGVKVIDLSADFRLKDPE 108 (343)
T ss_pred -----HHHHHHHHhCCCEEEECCcccCCCCch
Confidence 22222 235789999999666554433
No 299
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=96.65 E-value=0.0065 Score=56.87 Aligned_cols=108 Identities=16% Similarity=0.193 Sum_probs=70.3
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec------------CCHHhhcCcCCEEEEcCCCCh
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------------EDLDTMLPKCDIVVVNTPLTE 185 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~------------~~l~ell~~aDvVi~~~p~~~ 185 (304)
++|.|+|.|.||.-++.+|...|..|+.+.|++. .+..++.|.... ....+.+..+|+|++++-...
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQ 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecccc
Confidence 4899999999999999999999977888888553 444454443211 122355668999999987543
Q ss_pred hhhccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995 186 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 229 (304)
Q Consensus 186 ~t~~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ 229 (304)
. ...+ +...+.+++.+.++-.-.| +=.++.+...+...++.
T Consensus 80 ~-~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il 120 (307)
T COG1893 80 L-EEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVL 120 (307)
T ss_pred H-HHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEE
Confidence 2 2332 5666777888776644333 22334555555555444
No 300
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.64 E-value=0.0073 Score=55.87 Aligned_cols=71 Identities=21% Similarity=0.218 Sum_probs=49.9
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHH-hc----Cc---eec--CCHHhhcCcCCEEEEcCC
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEK-ET----GA---KFE--EDLDTMLPKCDIVVVNTP 182 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~-~~----g~---~~~--~~l~ell~~aDvVi~~~p 182 (304)
.+.++++.|+|.|..|++++..|...|+ +|.++||+..+.+... .. +. ... .++++.+..+|+|+.++|
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp 203 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP 203 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence 4678999999999999999999998898 5899999764433222 11 11 111 112345667899999888
Q ss_pred CC
Q 021995 183 LT 184 (304)
Q Consensus 183 ~~ 184 (304)
..
T Consensus 204 ~G 205 (283)
T PRK14027 204 MG 205 (283)
T ss_pred CC
Confidence 54
No 301
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.62 E-value=0.004 Score=61.64 Aligned_cols=114 Identities=17% Similarity=0.184 Sum_probs=72.8
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChh-HHHhcCceecC--CHHhhcCcCCEEEEcC--CC-Chhh
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAKFEE--DLDTMLPKCDIVVVNT--PL-TEKT 187 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~-~~~~~g~~~~~--~l~ell~~aDvVi~~~--p~-~~~t 187 (304)
.+.+++|.|+|+|..|+++|+.|...|++|.++|++..... ...+.|+.... ...+.+.++|+|+..- |. .+..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~ 91 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL 91 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence 57889999999999999999999999999999997543222 12345665432 2234567899887762 32 2211
Q ss_pred h-------ccccHHHHhc-------C-CC-CCEEEEcCCCchhchHHHHHHHHcCC
Q 021995 188 R-------GMFDKDRIAK-------M-KK-GVLIVNNARGAIMDTQAVVDACSSGH 227 (304)
Q Consensus 188 ~-------~~i~~~~l~~-------m-k~-g~ilVn~~rg~~vd~~aL~~aL~~g~ 227 (304)
. .++.+-.+.. + .+ ..+-|--+-|+.-...-|.+.|+...
T Consensus 92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g 147 (473)
T PRK00141 92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG 147 (473)
T ss_pred HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence 1 1222222221 1 12 24555555788888888888887644
No 302
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.61 E-value=0.0046 Score=62.44 Aligned_cols=87 Identities=16% Similarity=0.213 Sum_probs=60.6
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec----CCH---Hh-hcCcCCEEEEcCCCChhhhc
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDL---DT-MLPKCDIVVVNTPLTEKTRG 189 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~----~~l---~e-ll~~aDvVi~~~p~~~~t~~ 189 (304)
.++-|+|+|++|+.+++.|+..|.+|++.|.++...+..++.|.... .+. ++ -++++|.++++++.++++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 57899999999999999999999999999998766666666664321 122 21 25689999999987766544
Q ss_pred cccHHHHhcCCCCCEEE
Q 021995 190 MFDKDRIAKMKKGVLIV 206 (304)
Q Consensus 190 ~i~~~~l~~mk~g~ilV 206 (304)
++. . ...+.++..+|
T Consensus 498 iv~-~-~~~~~~~~~ii 512 (558)
T PRK10669 498 IVA-S-AREKRPDIEII 512 (558)
T ss_pred HHH-H-HHHHCCCCeEE
Confidence 432 2 23334454554
No 303
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=96.60 E-value=0.013 Score=51.98 Aligned_cols=92 Identities=27% Similarity=0.272 Sum_probs=62.9
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhh-----cCcCCEEEEcCCCC
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTM-----LPKCDIVVVNTPLT 184 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~el-----l~~aDvVi~~~p~~ 184 (304)
..|++|.|.|.|.+|+.+++.++..|.+|++.+++....+..++.|.... .+..+. -...|+++.+++..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~ 212 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP 212 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence 36789999999999999999999999999999886544444444443211 011111 24578888777632
Q ss_pred hhhhccccHHHHhcCCCCCEEEEcCCC
Q 021995 185 EKTRGMFDKDRIAKMKKGVLIVNNARG 211 (304)
Q Consensus 185 ~~t~~~i~~~~l~~mk~g~ilVn~~rg 211 (304)
. .....+..|+++..+++++..
T Consensus 213 ~-----~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 213 E-----TLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred H-----HHHHHHHhcccCCEEEEEccC
Confidence 1 124567778888888888754
No 304
>PRK04148 hypothetical protein; Provisional
Probab=96.59 E-value=0.0046 Score=50.73 Aligned_cols=69 Identities=13% Similarity=0.136 Sum_probs=52.8
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHhhcCcCCEEEEcCCCCh
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTMLPKCDIVVVNTPLTE 185 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~ell~~aDvVi~~~p~~~ 185 (304)
.++++..||+| -|..+|..|...|++|++.|.++...+.+++.+.... +.-.++-+.+|+|-..-|..+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~e 89 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRD 89 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHH
Confidence 56799999999 9999999999999999999998766665666554321 222367788999887777443
No 305
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=96.57 E-value=0.012 Score=54.41 Aligned_cols=87 Identities=21% Similarity=0.273 Sum_probs=56.5
Q ss_pred CEEEEEeeChhhHHHHHHhc-cCCCeEE-EEcCCCCC--hhHHHhcCce-ecCCHHhhcC--cCCEEEEcCCCChhhhcc
Q 021995 118 KTVGTVGCGRIGKLLLQRLK-PFNCNLL-YHDRVKMD--PQLEKETGAK-FEEDLDTMLP--KCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~-~~G~~V~-~~dr~~~~--~~~~~~~g~~-~~~~l~ell~--~aDvVi~~~p~~~~t~~~ 190 (304)
.+|||||.|.||+.++..+. .-++++. ++|+++.+ ...++++|+. .+.+.+++++ +.|+|++++|.....
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~--- 78 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHA--- 78 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHH---
Confidence 37999999999998876555 4467765 56776644 2456667764 3457888885 578899999854321
Q ss_pred ccHHHHhcCCCCCEEEEcC
Q 021995 191 FDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~ 209 (304)
+.....++.|..+++-.
T Consensus 79 --e~a~~al~aGk~VIdek 95 (285)
T TIGR03215 79 --RHARLLAELGKIVIDLT 95 (285)
T ss_pred --HHHHHHHHcCCEEEECC
Confidence 22233345565564443
No 306
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=96.55 E-value=0.0044 Score=57.31 Aligned_cols=96 Identities=22% Similarity=0.249 Sum_probs=71.8
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec------------------------CCHH
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------------------------EDLD 168 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~------------------------~~l~ 168 (304)
-...+.++.++|+|-+|-..+-..+..|+-|..+|-.+...+..+..|.+.. +-+.
T Consensus 160 gtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a 239 (356)
T COG3288 160 GTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVA 239 (356)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHH
Confidence 3567788999999999999999999999999999876544343333332110 1134
Q ss_pred hhcCcCCEEEEc--CCCChhhhccccHHHHhcCCCCCEEEEcC
Q 021995 169 TMLPKCDIVVVN--TPLTEKTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 169 ell~~aDvVi~~--~p~~~~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
+..++.|+|+.+ .|..+. ..++.++..+.||||+++||.+
T Consensus 240 ~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 240 EQAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HHhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence 568899999876 465544 4688899999999999999986
No 307
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=96.54 E-value=0.027 Score=52.23 Aligned_cols=149 Identities=17% Similarity=0.269 Sum_probs=88.7
Q ss_pred cchhhhccccceeeccccccchhchhHHH---hcC-CCcEEEEEeeecccCCCCcccHHHHHhCCc-EEEEcCCCC-hhH
Q 021995 2 AMKRVASSAINAFASSGFLRSSSRFSRHY---ASS-GSKKIVGVFYKGNEYASMNPNFLAAAAAGL-TVAEVTGSN-VVS 75 (304)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~-~~lk~i~~~~~G~d~~~~~~d~~~~~~~gI-~v~n~~g~~-~~~ 75 (304)
||+|.-.+-+|..-.+.-...+..+...+ ... ...=+|--+..|.- ..++..-++ +|.|+.... ..+
T Consensus 67 A~krLG~~Vv~~~~~~sSs~KGEtL~DT~~tl~ayg~D~iViRH~~egaa-------~~~a~~~~~~pvINaGDG~~qHP 139 (316)
T COG0540 67 AMKRLGADVVNFSDSESSSKKGETLADTIRTLSAYGVDAIVIRHPEEGAA-------RLLAEFSGVNPVINAGDGSHQHP 139 (316)
T ss_pred HHHHcCCcEEeecCCcccccccccHHHHHHHHHhhCCCEEEEeCccccHH-------HHHHHhcCCCceEECCCCCCCCc
Confidence 56666666666655222225555554443 332 33334443444443 224555566 688875432 222
Q ss_pred HHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEe---eChhhHHHHHHhccCCCeEEEEcCCCCC
Q 021995 76 VAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVG---CGRIGKLLLQRLKPFNCNLLYHDRVKMD 152 (304)
Q Consensus 76 vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG---~G~IG~~lA~~l~~~G~~V~~~dr~~~~ 152 (304)
+ .++--++...+.+ | .+.|++|+|+| .|+..++.++.|+.||.+|..+.|....
T Consensus 140 T--Q~LLDl~TI~~~~--------------------G-~~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~ 196 (316)
T COG0540 140 T--QALLDLYTIREEF--------------------G-RLDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLL 196 (316)
T ss_pred c--HHHHHHHHHHHHh--------------------C-CcCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhC
Confidence 1 2333334443321 2 38999999999 8999999999999999999999986533
Q ss_pred h-----hHHHhcC-c-eecCCHHhhcCcCCEEEEc
Q 021995 153 P-----QLEKETG-A-KFEEDLDTMLPKCDIVVVN 180 (304)
Q Consensus 153 ~-----~~~~~~g-~-~~~~~l~ell~~aDvVi~~ 180 (304)
. +.....| . ...+..+|.++++|++.+.
T Consensus 197 ~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~l 231 (316)
T COG0540 197 PPEYILEELEEKGGVVVEHDSDEEVIEEADVLYML 231 (316)
T ss_pred CchhHHHHHhhcCceEEEecchhhhhccCCEEEee
Confidence 3 2233332 2 3455666699999999664
No 308
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.54 E-value=0.0042 Score=54.97 Aligned_cols=91 Identities=23% Similarity=0.230 Sum_probs=64.8
Q ss_pred ccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHH---hcCce---ecCCHHhhcCcCCEEEEcCCCCh
Q 021995 112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK---ETGAK---FEEDLDTMLPKCDIVVVNTPLTE 185 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~---~~g~~---~~~~l~ell~~aDvVi~~~p~~~ 185 (304)
..+|.|++|.|||-|.+|..=++.|...|++|+++.+.. .++... +.++. ...+.++ +..+++|+.+++..
T Consensus 7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~-~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~- 83 (210)
T COG1648 7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF-EPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDE- 83 (210)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc-cHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCH-
Confidence 347999999999999999999999999999999999865 222211 11111 1113333 44599999988743
Q ss_pred hhhccccHHHHhcCCCCCEEEEcC
Q 021995 186 KTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 186 ~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
-+|+..+..+++-.++||+.
T Consensus 84 ----~ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 84 ----ELNERIAKAARERRILVNVV 103 (210)
T ss_pred ----HHHHHHHHHHHHhCCceecc
Confidence 34567777777778889884
No 309
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.53 E-value=0.014 Score=55.57 Aligned_cols=91 Identities=23% Similarity=0.270 Sum_probs=66.8
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHh-cCceecCCH-H--------hhc--CcCCEEEEcCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKE-TGAKFEEDL-D--------TML--PKCDIVVVNTP 182 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~-~g~~~~~~l-~--------ell--~~aDvVi~~~p 182 (304)
.+.+|.|+|.|.||...++.++.+|.. |++.|+++...+.+++ .+.....+. + ++. ..+|+++-|+.
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 344999999999999999999999965 7788998877888877 454422111 1 233 34999999987
Q ss_pred CChhhhccccHHHHhcCCCCCEEEEcCCC
Q 021995 183 LTEKTRGMFDKDRIAKMKKGVLIVNNARG 211 (304)
Q Consensus 183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~rg 211 (304)
.. . . -.+.++.++++..++.+|-.
T Consensus 248 ~~-~---~-~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 248 SP-P---A-LDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CH-H---H-HHHHHHHhcCCCEEEEEecc
Confidence 22 2 1 25778889999999998843
No 310
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=96.52 E-value=0.062 Score=52.45 Aligned_cols=133 Identities=19% Similarity=0.242 Sum_probs=82.5
Q ss_pred HHHhCCcEEEEcC-CCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEee---ChhhHHH
Q 021995 57 AAAAAGLTVAEVT-GSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGC---GRIGKLL 132 (304)
Q Consensus 57 ~~~~~gI~v~n~~-g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~---G~IG~~l 132 (304)
.++..+|+|.|.- |....++ .+|+=++.+.+++ |. .+..+.|++|+++|- +++.+++
T Consensus 199 ~A~~s~vPVINAgdg~~~HPt--QaLaDl~Ti~E~~---------g~--------~g~~l~G~kIa~vGD~~~~rv~~Sl 259 (429)
T PRK11891 199 FARATNLPVINGGDGPGEHPS--QALLDLYTIQREF---------SR--------LGKIVDGAHIALVGDLKYGRTVHSL 259 (429)
T ss_pred HHHhCCCCEEECCCCCCCCcH--HHHHHHHHHHHHh---------Cc--------cCCCcCCCEEEEECcCCCChHHHHH
Confidence 4566789999986 4332221 1233333333321 11 122488999999998 5899999
Q ss_pred HHHhccC-CCeEEEEcCCCC-C-hhH---HHhcC--ceecCCHHhhcCcCCEEEEcCCCChh----------hhccccHH
Q 021995 133 LQRLKPF-NCNLLYHDRVKM-D-PQL---EKETG--AKFEEDLDTMLPKCDIVVVNTPLTEK----------TRGMFDKD 194 (304)
Q Consensus 133 A~~l~~~-G~~V~~~dr~~~-~-~~~---~~~~g--~~~~~~l~ell~~aDvVi~~~p~~~~----------t~~~i~~~ 194 (304)
+..+..+ |++|.+..|... . .+. +++.| +...+++++.++++|+|....-..+. ....++++
T Consensus 260 ~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~q~er~~~~~~~~~~~~y~vt~e 339 (429)
T PRK11891 260 VKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRIQKERFADESFEGYTPDFQINQA 339 (429)
T ss_pred HHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCchhhcccCHHHHHhccCCcCCHH
Confidence 9988876 999999887542 2 221 22234 34568999999999999875421110 01235666
Q ss_pred HHhc-CCCCCEEEEc
Q 021995 195 RIAK-MKKGVLIVNN 208 (304)
Q Consensus 195 ~l~~-mk~g~ilVn~ 208 (304)
.++. .|++++|..+
T Consensus 340 ll~~~ak~dai~MHc 354 (429)
T PRK11891 340 LVDAVCKPDTLIMHP 354 (429)
T ss_pred HHhCccCCCcEEECC
Confidence 7766 6777766654
No 311
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=96.52 E-value=0.01 Score=59.68 Aligned_cols=71 Identities=21% Similarity=0.243 Sum_probs=47.7
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH-HhcCce--ecCCHHhh-cCcCCEEEEcCCCC
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAK--FEEDLDTM-LPKCDIVVVNTPLT 184 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~--~~~~l~el-l~~aDvVi~~~p~~ 184 (304)
.+.++++.|+|.|.+|++++..|...|++|++++|+..+.+.. ...+.. ...++.+. ...+|+|+.++|..
T Consensus 376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vG 450 (529)
T PLN02520 376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVG 450 (529)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCC
Confidence 5778999999999999999999999999999999975332222 222211 11222222 23467777777643
No 312
>PLN02527 aspartate carbamoyltransferase
Probab=96.52 E-value=0.022 Score=53.33 Aligned_cols=96 Identities=20% Similarity=0.284 Sum_probs=65.3
Q ss_pred ccCCCEEEEEeeC---hhhHHHHHHhccC-CCeEEEEcCCCC-C-hhH---HHhcCc--eecCCHHhhcCcCCEEEEcCC
Q 021995 114 DLEGKTVGTVGCG---RIGKLLLQRLKPF-NCNLLYHDRVKM-D-PQL---EKETGA--KFEEDLDTMLPKCDIVVVNTP 182 (304)
Q Consensus 114 ~L~g~~vgIIG~G---~IG~~lA~~l~~~-G~~V~~~dr~~~-~-~~~---~~~~g~--~~~~~l~ell~~aDvVi~~~p 182 (304)
.+.|.+|+++|-+ ++.++++..+..+ |++|.+..|... . .+. +++.|. ...+++++.++++|+|....-
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~ 227 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRI 227 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCc
Confidence 4789999999975 6899999988887 999998887542 2 222 222243 346799999999999988542
Q ss_pred CCh------h-h-----hccccHHHHhcCCCCCEEEEcC
Q 021995 183 LTE------K-T-----RGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 183 ~~~------~-t-----~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
..+ . . ...++++.++.++++++|..+.
T Consensus 228 q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHcl 266 (306)
T PLN02527 228 QRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPL 266 (306)
T ss_pred chhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCC
Confidence 111 0 1 1345666777777777766553
No 313
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=96.51 E-value=0.019 Score=52.57 Aligned_cols=106 Identities=20% Similarity=0.259 Sum_probs=63.1
Q ss_pred CEEEEEe-eChhhHHHHHHhcc-CCCeEE-EEcCCCCCh---hHHH-----hcCceecCCHHhhcCcCCEEEEcCCCChh
Q 021995 118 KTVGTVG-CGRIGKLLLQRLKP-FNCNLL-YHDRVKMDP---QLEK-----ETGAKFEEDLDTMLPKCDIVVVNTPLTEK 186 (304)
Q Consensus 118 ~~vgIIG-~G~IG~~lA~~l~~-~G~~V~-~~dr~~~~~---~~~~-----~~g~~~~~~l~ell~~aDvVi~~~p~~~~ 186 (304)
.+|+|+| +|.||+.+++.+.. -++++. ++|+..... .... ..++..+.+++++...+|+|+.+.|....
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p~~~ 81 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTPEGV 81 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCChHHH
Confidence 3899999 69999999998874 588865 577432111 1111 13455567888886679999998863211
Q ss_pred hhccccHHHHhcCCCCCEEEEcCCCchh-chHHHHHHHHcCCc
Q 021995 187 TRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHI 228 (304)
Q Consensus 187 t~~~i~~~~l~~mk~g~ilVn~~rg~~v-d~~aL~~aL~~g~i 228 (304)
.......++.|.-+|-...|-.. +.+.|.++.++..+
T Consensus 82 -----~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~ 119 (266)
T TIGR00036 82 -----LNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGI 119 (266)
T ss_pred -----HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCc
Confidence 12333445556555554445433 23334555455433
No 314
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.50 E-value=0.0073 Score=56.70 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=58.4
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChh-HHHhc--------Ccee-cCCHHhhcCcCCEEEEcCCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET--------GAKF-EEDLDTMLPKCDIVVVNTPL 183 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~-~~~~~--------g~~~-~~~l~ell~~aDvVi~~~p~ 183 (304)
.+++|+|||.|.+|..+|..+...|. ++..+|++....+ ...++ .... ..+. +.+++||+|+++.-.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIitag~ 83 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVITAGA 83 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence 56799999999999999999987777 7999998654321 11111 1111 1233 558999999997643
Q ss_pred --Ch-hhh--------cccc--HHHHhcCCCCCEEEEcCC
Q 021995 184 --TE-KTR--------GMFD--KDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 184 --~~-~t~--------~~i~--~~~l~~mk~g~ilVn~~r 210 (304)
.+ .++ .++. .+.+....+++++|+++-
T Consensus 84 ~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 84 PQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 21 111 1111 112222346889999984
No 315
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.50 E-value=0.026 Score=55.12 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=72.3
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCCh----hHHHhcCceec--CCHHhhcCc-CCEEEEcC--CCC
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP----QLEKETGAKFE--EDLDTMLPK-CDIVVVNT--PLT 184 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~----~~~~~~g~~~~--~~l~ell~~-aDvVi~~~--p~~ 184 (304)
++.|+++.|+|.|.+|.++|+.|...|++|+++|++.... +.....|+... ....+++.. +|+|+... |.+
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~ 81 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT 81 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence 3678999999999999999999999999999999754221 22334455432 223344454 89887754 322
Q ss_pred -hhh-------hccccH-HHHhcC-CCCCEEEEcCCCchhchHHHHHHHHcCC
Q 021995 185 -EKT-------RGMFDK-DRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGH 227 (304)
Q Consensus 185 -~~t-------~~~i~~-~~l~~m-k~g~ilVn~~rg~~vd~~aL~~aL~~g~ 227 (304)
+.. ..++.+ +++..+ +...+-|--+.|+.-...-+...|+...
T Consensus 82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g 134 (447)
T PRK02472 82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGG 134 (447)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCC
Confidence 210 112322 232333 3345556666788888888888887543
No 316
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=96.50 E-value=0.009 Score=55.82 Aligned_cols=90 Identities=19% Similarity=0.206 Sum_probs=63.8
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec-C----C---HHhhcC--cCCEEEEcCCCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-E----D---LDTMLP--KCDIVVVNTPLT 184 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~-~----~---l~ell~--~aDvVi~~~p~~ 184 (304)
.|.+|.|+|.|.+|..+++.++.+|++ |++.+++..+.+.++++|+..+ . + +.++.. ..|+++-+....
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~ 242 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNT 242 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCH
Confidence 489999999999999999999999999 9999887666666667775321 1 1 112222 478888776532
Q ss_pred hhhhccccHHHHhcCCCCCEEEEcCC
Q 021995 185 EKTRGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 185 ~~t~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
.. ....+..++++..++.++.
T Consensus 243 ~~-----~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 243 AA-----RRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred HH-----HHHHHHHhhcCCEEEEEcC
Confidence 11 1355677888888887764
No 317
>PRK11579 putative oxidoreductase; Provisional
Probab=96.48 E-value=0.0094 Score=56.43 Aligned_cols=66 Identities=15% Similarity=0.197 Sum_probs=46.3
Q ss_pred CEEEEEeeChhhHH-HHHHhcc-CCCeEE-EEcCCCCChhHHHhc-CceecCCHHhhcC--cCCEEEEcCCCCh
Q 021995 118 KTVGTVGCGRIGKL-LLQRLKP-FNCNLL-YHDRVKMDPQLEKET-GAKFEEDLDTMLP--KCDIVVVNTPLTE 185 (304)
Q Consensus 118 ~~vgIIG~G~IG~~-lA~~l~~-~G~~V~-~~dr~~~~~~~~~~~-g~~~~~~l~ell~--~aDvVi~~~p~~~ 185 (304)
.+|||||+|.||+. .+..++. -++++. ++|++... ....+ +...+++++++++ +.|+|++++|...
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~--~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~ 76 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATK--VKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDT 76 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHH--HHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 48999999999984 5665554 478876 57775422 22233 3455689999996 5799999999643
No 318
>PRK06270 homoserine dehydrogenase; Provisional
Probab=96.48 E-value=0.019 Score=54.51 Aligned_cols=112 Identities=18% Similarity=0.259 Sum_probs=67.8
Q ss_pred CEEEEEeeChhhHHHHHHhccC----------CCeEE-EEcCCC-------CChhHH----HhcCc-e------ecCCHH
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPF----------NCNLL-YHDRVK-------MDPQLE----KETGA-K------FEEDLD 168 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~----------G~~V~-~~dr~~-------~~~~~~----~~~g~-~------~~~~l~ 168 (304)
.+|||+|+|.||+.+++.+... +.+|. ++|++. ...+.. ...+. . ...+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 3799999999999999998644 56755 556432 112111 11121 1 123778
Q ss_pred hhc--CcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCch-hchHHHHHHHHcCCce
Q 021995 169 TML--PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIA 229 (304)
Q Consensus 169 ell--~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~-vd~~aL~~aL~~g~i~ 229 (304)
+++ .+.|+|+.++|....+...--.-....|+.|.-+|-...+.+ ...++|.++.++....
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~ 146 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVR 146 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCE
Confidence 887 468999999986543222212233566777877776544443 2456777777776554
No 319
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=96.47 E-value=0.014 Score=55.41 Aligned_cols=90 Identities=13% Similarity=0.192 Sum_probs=62.9
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCC-hhHHHhcCceec---C---CHHhhcCcCCEEEEcCCCChhhh
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFE---E---DLDTMLPKCDIVVVNTPLTEKTR 188 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~-~~~~~~~g~~~~---~---~l~ell~~aDvVi~~~p~~~~t~ 188 (304)
.|++|.|.|.|.+|..+++.++.+|.+|++.+.+... .+.++++|+... . .+.+.....|+++-++.....
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~~~-- 260 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVHA-- 260 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCHHH--
Confidence 6889999999999999999999999998887765433 234456676321 1 123333457888877652211
Q ss_pred ccccHHHHhcCCCCCEEEEcCC
Q 021995 189 GMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 189 ~~i~~~~l~~mk~g~ilVn~~r 210 (304)
+ .+.++.++++..+|.++.
T Consensus 261 --~-~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 261 --L-GPLLGLLKVNGKLITLGL 279 (360)
T ss_pred --H-HHHHHHhcCCcEEEEeCC
Confidence 1 456778899999988864
No 320
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.46 E-value=0.0075 Score=61.78 Aligned_cols=89 Identities=13% Similarity=0.154 Sum_probs=63.0
Q ss_pred CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec----CCHH----hhcCcCCEEEEcCCCChhhh
Q 021995 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLD----TMLPKCDIVVVNTPLTEKTR 188 (304)
Q Consensus 117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~----~~l~----ell~~aDvVi~~~p~~~~t~ 188 (304)
..+|-|+|+|++|+.+++.|.+.|.++++.|.++...+..++.|...+ .+.+ .-++++|.++++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 468999999999999999999999999999988766666666665321 2222 23568999999998766654
Q ss_pred ccccHHHHhcCCCCCEEEE
Q 021995 189 GMFDKDRIAKMKKGVLIVN 207 (304)
Q Consensus 189 ~~i~~~~l~~mk~g~ilVn 207 (304)
.++ ...+.+.|+..++-
T Consensus 480 ~i~--~~ar~~~p~~~iia 496 (621)
T PRK03562 480 QLV--ELVKEHFPHLQIIA 496 (621)
T ss_pred HHH--HHHHHhCCCCeEEE
Confidence 442 34444555544543
No 321
>PRK12862 malic enzyme; Reviewed
Probab=96.43 E-value=0.042 Score=57.45 Aligned_cols=122 Identities=16% Similarity=0.146 Sum_probs=93.8
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCC
Q 021995 61 AGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFN 140 (304)
Q Consensus 61 ~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G 140 (304)
.+|+|.|.. . .-+|--+++.+++.+|- .++.|...+|.|.|.|..|-.+++.|...|
T Consensus 160 ~~ip~f~DD-~--~GTa~v~la~l~~a~~~--------------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G 216 (763)
T PRK12862 160 MKIPVFHDD-Q--HGTAIIVAAALLNGLKL--------------------VGKDIEDVKLVASGAGAAALACLDLLVSLG 216 (763)
T ss_pred CCCceEecC-c--ccHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEEChhHHHHHHHHHHHHcC
Confidence 369999984 2 34566678888888883 245789999999999999999999999889
Q ss_pred C---eEEEEcCCCC------------ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEE
Q 021995 141 C---NLLYHDRVKM------------DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLI 205 (304)
Q Consensus 141 ~---~V~~~dr~~~------------~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~il 205 (304)
. +++.+|+... +...++.. ...+|+|+++.+|+++=+.- .+++.++.++.|.+..++
T Consensus 217 ~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~---~~~~l~e~~~~~~v~iG~s~-----~g~~~~~~v~~M~~~pii 288 (763)
T PRK12862 217 VKRENIWVTDIKGVVYEGRTELMDPWKARYAQKT---DARTLAEVIEGADVFLGLSA-----AGVLKPEMVKKMAPRPLI 288 (763)
T ss_pred CCcccEEEEcCCCeeeCCCCccccHHHHHHhhhc---ccCCHHHHHcCCCEEEEcCC-----CCCCCHHHHHHhccCCEE
Confidence 8 6889996531 11112221 23589999999999875432 379999999999999999
Q ss_pred EEcCCCch
Q 021995 206 VNNARGAI 213 (304)
Q Consensus 206 Vn~~rg~~ 213 (304)
.-.|....
T Consensus 289 falsNP~~ 296 (763)
T PRK12862 289 FALANPTP 296 (763)
T ss_pred EeCCCCcc
Confidence 99998885
No 322
>PRK10206 putative oxidoreductase; Provisional
Probab=96.42 E-value=0.0072 Score=57.33 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=46.7
Q ss_pred EEEEEeeChhhHH-HHHHh-cc-CCCeEE-EEcCCCCChhHHHhcC-ceecCCHHhhcC--cCCEEEEcCCCCh
Q 021995 119 TVGTVGCGRIGKL-LLQRL-KP-FNCNLL-YHDRVKMDPQLEKETG-AKFEEDLDTMLP--KCDIVVVNTPLTE 185 (304)
Q Consensus 119 ~vgIIG~G~IG~~-lA~~l-~~-~G~~V~-~~dr~~~~~~~~~~~g-~~~~~~l~ell~--~aDvVi~~~p~~~ 185 (304)
++||||+|.+++. .+..+ .. -++++. ++|+++...+...+++ ...+++++++++ +.|+|++++|...
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~ 76 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADS 76 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchH
Confidence 7999999998753 34434 32 367865 6888654444444554 456678999996 5799999999653
No 323
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.41 E-value=0.0052 Score=48.79 Aligned_cols=100 Identities=21% Similarity=0.316 Sum_probs=60.7
Q ss_pred eeChhhHHHHHHhccC----CCeEE-EEcCC--CCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCChhhhccccHH
Q 021995 124 GCGRIGKLLLQRLKPF----NCNLL-YHDRV--KMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFDKD 194 (304)
Q Consensus 124 G~G~IG~~lA~~l~~~----G~~V~-~~dr~--~~~~~~~~~~g~~~~~~l~ell~--~aDvVi~~~p~~~~t~~~i~~~ 194 (304)
|+|.||+.+++.+... +++|. +++++ ..........+.....++++++. ..|+|+=|.+..+. .+-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~-----~~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAV-----AEY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHH-----HHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHH-----HHH
Confidence 8999999999999764 67755 66765 11111112223345678999998 89999988654322 233
Q ss_pred HHhcCCCCCEEEEcCCCchh---chHHHHHHHHcCCc
Q 021995 195 RIAKMKKGVLIVNNARGAIM---DTQAVVDACSSGHI 228 (304)
Q Consensus 195 ~l~~mk~g~ilVn~~rg~~v---d~~aL~~aL~~g~i 228 (304)
..+.|+.|.-+|-.+-+.+. ..+.|.++.+++..
T Consensus 76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~ 112 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALADEALYEELREAARKNGV 112 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-
T ss_pred HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCC
Confidence 45667889999999988888 33344454444443
No 324
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.40 E-value=0.0096 Score=58.64 Aligned_cols=113 Identities=19% Similarity=0.179 Sum_probs=73.8
Q ss_pred cCCCEEEEEeeChhhHH-HHHHhccCCCeEEEEcCCCCC-hhHHHhcCceec-CCHHhhcCcCCEEEEcC--CC-Chhhh
Q 021995 115 LEGKTVGTVGCGRIGKL-LLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFE-EDLDTMLPKCDIVVVNT--PL-TEKTR 188 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~-lA~~l~~~G~~V~~~dr~~~~-~~~~~~~g~~~~-~~l~ell~~aDvVi~~~--p~-~~~t~ 188 (304)
.++++|.|+|+|..|.+ +|+.|+..|++|.++|..... .+...+.|+... ..-.+.+.++|+|+..- |. ++...
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 56789999999999999 799999999999999975432 122334465442 12234567899987753 32 22221
Q ss_pred -------ccccH-HHHhcC-CC-CCEEEEcCCCchhchHHHHHHHHcCC
Q 021995 189 -------GMFDK-DRIAKM-KK-GVLIVNNARGAIMDTQAVVDACSSGH 227 (304)
Q Consensus 189 -------~~i~~-~~l~~m-k~-g~ilVn~~rg~~vd~~aL~~aL~~g~ 227 (304)
.++.+ +++..+ ++ ..+-|--+.|+.-...-+.+.|+...
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 23333 343333 32 35566666799888888888887654
No 325
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.40 E-value=0.007 Score=56.58 Aligned_cols=65 Identities=18% Similarity=0.224 Sum_probs=46.5
Q ss_pred CEEEEEeeChhhHHHHHHhccCC--CeEEEEcCCCCChh-HHHhcC-ce--------ecCCHHhhcCcCCEEEEcCCC
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKETG-AK--------FEEDLDTMLPKCDIVVVNTPL 183 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~-~~~~~g-~~--------~~~~l~ell~~aDvVi~~~p~ 183 (304)
++|+|||.|.+|..+|..|...| .+|..+|++....+ .+.++. .. ...+. +.+++||+++++.+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~ 77 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGA 77 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCC
Confidence 37999999999999999998888 57999998764332 122111 11 11344 558999999999875
No 326
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.40 E-value=0.0098 Score=55.62 Aligned_cols=68 Identities=26% Similarity=0.340 Sum_probs=50.5
Q ss_pred CEEEEEeeChhhH-HHHHHhccCC--Ce-EEEEcCCCCC-hhHHHhcCce-ecCCHHhhcCc--CCEEEEcCCCCh
Q 021995 118 KTVGTVGCGRIGK-LLLQRLKPFN--CN-LLYHDRVKMD-PQLEKETGAK-FEEDLDTMLPK--CDIVVVNTPLTE 185 (304)
Q Consensus 118 ~~vgIIG~G~IG~-~lA~~l~~~G--~~-V~~~dr~~~~-~~~~~~~g~~-~~~~l~ell~~--aDvVi~~~p~~~ 185 (304)
.+|||||+|.+++ ..+..+...+ ++ |.++|+++.. ...++++++. .+.+++++++. .|+|++++|...
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~ 79 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNAL 79 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChh
Confidence 5899999997764 5777777765 35 5577887744 3455667763 67799999987 589999999654
No 327
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.39 E-value=0.01 Score=56.80 Aligned_cols=67 Identities=25% Similarity=0.378 Sum_probs=53.5
Q ss_pred cCCCEEEEEee----------ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc--CceecCCHHhhcCcCCEEEEcCC
Q 021995 115 LEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--GAKFEEDLDTMLPKCDIVVVNTP 182 (304)
Q Consensus 115 L~g~~vgIIG~----------G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~--g~~~~~~l~ell~~aDvVi~~~p 182 (304)
|.||+|||+|+ ..-...++++|+..|++|.+|||... +.+... ++.+..++++++++||+++++..
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~--~~~~~~~~~~~~~~~~~~~~~~aDaivi~te 385 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAM--ENAFRNFPDVELESDAEEALKGADAIVINTE 385 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhh--HHHHhcCCCceEeCCHHHHHhhCCEEEEecc
Confidence 88999999997 35577889999999999999998542 222221 35778899999999999999876
Q ss_pred C
Q 021995 183 L 183 (304)
Q Consensus 183 ~ 183 (304)
.
T Consensus 386 w 386 (414)
T COG1004 386 W 386 (414)
T ss_pred H
Confidence 4
No 328
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.39 E-value=0.02 Score=55.57 Aligned_cols=89 Identities=26% Similarity=0.324 Sum_probs=62.7
Q ss_pred ccCCCEEEEEee----------ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCC
Q 021995 114 DLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL 183 (304)
Q Consensus 114 ~L~g~~vgIIG~----------G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~ 183 (304)
.+.|++|+|+|+ ..-...+++.|...|++|.+|||.-.... .... ....++++.++++|+|+++.+.
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~-~~~~--~~~~~~~~~~~~ad~~v~~t~~ 386 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEE-VKGL--PLIDDLEEALKGADALVILTDH 386 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhh-hhhc--ccCCCHHHHHhCCCEEEEecCC
Confidence 478999999997 45678999999999999999998643222 2222 2246888999999999999875
Q ss_pred ChhhhccccHHHHh-cCCCCCEEEEc
Q 021995 184 TEKTRGMFDKDRIA-KMKKGVLIVNN 208 (304)
Q Consensus 184 ~~~t~~~i~~~~l~-~mk~g~ilVn~ 208 (304)
.+ .+. ++-+.+. .|+ ..+++|.
T Consensus 387 ~~-~~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 387 DE-FKD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred HH-Hhc-cCHHHHHHhcC-CCEEEeC
Confidence 43 222 3444444 344 4577774
No 329
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.39 E-value=0.017 Score=54.11 Aligned_cols=113 Identities=14% Similarity=0.185 Sum_probs=66.0
Q ss_pred CEEEEEeeChhhHHHHHHhccCC--CeEEEEcCCCCChh-HHHhc----------CceecCCHHhhcCcCCEEEEcCCC-
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKET----------GAKFEEDLDTMLPKCDIVVVNTPL- 183 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~-~~~~~----------g~~~~~~l~ell~~aDvVi~~~p~- 183 (304)
.+|+|||.|.+|..+|..|...| -++..+|.+....+ .+.++ .+....+.++ +++||+|+++.-.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence 48999999999999999886555 46999998653221 11111 1122245554 8999999997542
Q ss_pred -Ch-hhhc-cc--cH-------HHHhcCCCCCEEEEcCCCchhchHHHHHH--HHcCCceEE
Q 021995 184 -TE-KTRG-MF--DK-------DRIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGY 231 (304)
Q Consensus 184 -~~-~t~~-~i--~~-------~~l~~mk~g~ilVn~~rg~~vd~~aL~~a--L~~g~i~ga 231 (304)
.+ .++. ++ |. +.+....+++++|+++..-=+-...+.+. +...++.|.
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~ 144 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGS 144 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEec
Confidence 21 1221 11 11 22333478899999984433333333333 444555555
No 330
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=96.38 E-value=0.013 Score=56.20 Aligned_cols=89 Identities=17% Similarity=0.199 Sum_probs=60.9
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCC-hhHHHhcCceec---CC---HHhhcCcCCEEEEcCCCChhhh
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKTR 188 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~-~~~~~~~g~~~~---~~---l~ell~~aDvVi~~~p~~~~t~ 188 (304)
.|++|.|.|.|.+|..+++.++.+|.+|++.+++... .+.++++|+... .+ +.+.....|+++-++.....
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~~-- 255 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHA-- 255 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHHH--
Confidence 5889999999999999999999999999888765432 345556666322 11 22233456888877642211
Q ss_pred ccccHHHHhcCCCCCEEEEcC
Q 021995 189 GMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 189 ~~i~~~~l~~mk~g~ilVn~~ 209 (304)
-.+.++.++++..++.++
T Consensus 256 ---~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 256 ---LLPLFSLLKVSGKLVALG 273 (375)
T ss_pred ---HHHHHHhhcCCCEEEEEc
Confidence 135566778888888776
No 331
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=96.38 E-value=0.081 Score=55.15 Aligned_cols=126 Identities=13% Similarity=0.103 Sum_probs=94.2
Q ss_pred hCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccC
Q 021995 60 AAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPF 139 (304)
Q Consensus 60 ~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~ 139 (304)
+.+|+|.|.. . .-+|--+++.+++.+|- .+..+...+|.|.|.|..|-.+++.|...
T Consensus 151 ~~~ip~f~DD-~--~GTa~v~lA~l~na~~~--------------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~ 207 (752)
T PRK07232 151 RMDIPVFHDD-Q--HGTAIISAAALLNALEL--------------------VGKKIEDVKIVVSGAGAAAIACLNLLVAL 207 (752)
T ss_pred hcCCCeeccc-c--chHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECccHHHHHHHHHHHHc
Confidence 3479999874 2 44566678888888883 24578899999999999999999999988
Q ss_pred CC---eEEEEcCCCC----C---hhHHH-hcCc-eecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEE
Q 021995 140 NC---NLLYHDRVKM----D---PQLEK-ETGA-KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVN 207 (304)
Q Consensus 140 G~---~V~~~dr~~~----~---~~~~~-~~g~-~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn 207 (304)
|. +++.+|+... . ....+ .+-. ....+|+|+++.+|+++=.. +.+++.++.++.|.+..++.-
T Consensus 208 G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~s-----~~g~~~~~~v~~M~~~piifa 282 (752)
T PRK07232 208 GAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGLS-----AAGVLTPEMVKSMADNPIIFA 282 (752)
T ss_pred CCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCCEEEe
Confidence 88 6889987631 0 01111 1110 22358999999999887432 137999999999999999999
Q ss_pred cCCCch
Q 021995 208 NARGAI 213 (304)
Q Consensus 208 ~~rg~~ 213 (304)
.+....
T Consensus 283 lsNP~~ 288 (752)
T PRK07232 283 LANPDP 288 (752)
T ss_pred cCCCCc
Confidence 999886
No 332
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=96.37 E-value=0.026 Score=53.11 Aligned_cols=90 Identities=13% Similarity=0.140 Sum_probs=61.7
Q ss_pred CCCEEEEEeeChhhHHHHHHhcc-CC-CeEEEEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCChhhhccc
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMF 191 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~-~G-~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvVi~~~p~~~~t~~~i 191 (304)
.|.+|.|+|.|.+|...++.++. +| .+|++.++++.+.+.++..+.... .+++.. ..|+|+-++... .+...+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~--~~~~~~~~g~d~viD~~G~~-~~~~~~ 239 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYL--IDDIPEDLAVDHAFECVGGR-GSQSAI 239 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceee--hhhhhhccCCcEEEECCCCC-ccHHHH
Confidence 58899999999999999988875 54 679999987766666655444321 222222 479998887631 011112
Q ss_pred cHHHHhcCCCCCEEEEcC
Q 021995 192 DKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 192 ~~~~l~~mk~g~ilVn~~ 209 (304)
.+.++.++++..++.++
T Consensus 240 -~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 240 -NQIIDYIRPQGTIGLMG 256 (341)
T ss_pred -HHHHHhCcCCcEEEEEe
Confidence 46778899999988876
No 333
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=96.35 E-value=0.0096 Score=56.14 Aligned_cols=90 Identities=14% Similarity=0.237 Sum_probs=60.9
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec----C----CHHhhcC------cCC----EE
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----E----DLDTMLP------KCD----IV 177 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~----~----~l~ell~------~aD----vV 177 (304)
.|.+|.|+|.|.+|..+++.++..|.+|++.++++...+.++++|+... + ++.+.+. ..| ++
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v 245 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKI 245 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEE
Confidence 5889999999999999999999999999999887766666667775321 0 1111111 233 56
Q ss_pred EEcCCCChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995 178 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 178 i~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
+-+...... ....++.++++..++.++.
T Consensus 246 ~d~~g~~~~-----~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 246 FECSGSKPG-----QESALSLLSHGGTLVVVGY 273 (349)
T ss_pred EECCCChHH-----HHHHHHHHhcCCeEEEECc
Confidence 655543211 1345677788888888775
No 334
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.34 E-value=0.012 Score=63.33 Aligned_cols=69 Identities=16% Similarity=0.278 Sum_probs=47.7
Q ss_pred CCCEEEEEeeChhhHHHHHHhccC-CCe-------------EEEEcCCCCChhHH-Hhc-Cc---ee-cCCHHh---hcC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPF-NCN-------------LLYHDRVKMDPQLE-KET-GA---KF-EEDLDT---MLP 172 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~-G~~-------------V~~~dr~~~~~~~~-~~~-g~---~~-~~~l~e---ll~ 172 (304)
..++|+|||.|.||+.+++.|... +++ |.+.|++....+.. +.. ++ .. +.+.++ +++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 467999999999999999999653 334 88889876433322 222 31 22 335444 447
Q ss_pred cCCEEEEcCCCC
Q 021995 173 KCDIVVVNTPLT 184 (304)
Q Consensus 173 ~aDvVi~~~p~~ 184 (304)
++|+|++++|..
T Consensus 648 ~~DaVIsalP~~ 659 (1042)
T PLN02819 648 QVDVVISLLPAS 659 (1042)
T ss_pred CCCEEEECCCch
Confidence 899999999963
No 335
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.33 E-value=0.01 Score=59.11 Aligned_cols=116 Identities=18% Similarity=0.216 Sum_probs=71.8
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCCh--hHHHhc--Cceec--CCHHhhcCcCCEEEEc--CCCC-
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKET--GAKFE--EDLDTMLPKCDIVVVN--TPLT- 184 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~--~~~~~~--g~~~~--~~l~ell~~aDvVi~~--~p~~- 184 (304)
++.+++|.|+|+|..|.++|+.|+..|++|.++|...... +..... |+... ....+.+.++|+|+.. +|.+
T Consensus 4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~ 83 (498)
T PRK02006 4 DLQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLE 83 (498)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCcc
Confidence 3578899999999999999999999999999999754321 112233 33321 1123556789999886 3432
Q ss_pred ----hhh-------hccc-cHHHHhc-C--------CCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995 185 ----EKT-------RGMF-DKDRIAK-M--------KKGVLIVNNARGAIMDTQAVVDACSSGHIA 229 (304)
Q Consensus 185 ----~~t-------~~~i-~~~~l~~-m--------k~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ 229 (304)
|.. ..++ ..+.+.. + ++..+-|--+-|+.-...-|.+.|+.....
T Consensus 84 ~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~ 149 (498)
T PRK02006 84 AALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKK 149 (498)
T ss_pred cccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence 211 1122 1222221 2 123455555678888888888888765443
No 336
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.33 E-value=0.028 Score=54.98 Aligned_cols=113 Identities=21% Similarity=0.290 Sum_probs=70.8
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCC-h----hHHHhcCcee--cCCHHhhcCcCCEEEEcCCCChh
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-P----QLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEK 186 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~-~----~~~~~~g~~~--~~~l~ell~~aDvVi~~~p~~~~ 186 (304)
.+.++++.|+|.|.+|..+|+.|...|++|+++|++... . +.....|... .+..++....+|+|+.+.-..+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence 368899999999999999999999999999999986421 1 1112234432 22334556789999887543322
Q ss_pred hhcc----------cc-HHHHhc-CCCCCEEEEcCCCchhchHHHHHHHHcC
Q 021995 187 TRGM----------FD-KDRIAK-MKKGVLIVNNARGAIMDTQAVVDACSSG 226 (304)
Q Consensus 187 t~~~----------i~-~~~l~~-mk~g~ilVn~~rg~~vd~~aL~~aL~~g 226 (304)
...+ +. .+.+.. .+...+-|--+.|+.-...-|...|...
T Consensus 82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~ 133 (450)
T PRK14106 82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNA 133 (450)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHc
Confidence 2111 11 112222 2323444555578888888788888653
No 337
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.32 E-value=0.035 Score=51.44 Aligned_cols=105 Identities=14% Similarity=0.183 Sum_probs=75.8
Q ss_pred CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhh--------
Q 021995 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR-------- 188 (304)
Q Consensus 117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~-------- 188 (304)
|++++|||--.--..+++.|...|++|..|.-...... . .|+...+..++.++++|+|++=+|.+.+..
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~-~--~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~ 77 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDG-F--TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSN 77 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccc-c--ccceeecchhhhhccCCEEEECCccccCCceEeccccc
Confidence 67999999999999999999999999887764211111 1 155555566777999999999999765421
Q ss_pred --ccccHHHHhcCCCCCEEEEcCCCchhchHHHHHHHHcCCce
Q 021995 189 --GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 229 (304)
Q Consensus 189 --~~i~~~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i~ 229 (304)
-.++++.+++|+++++ +-+| ++..++.++.++..|.
T Consensus 78 ~~~~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~ 115 (287)
T TIGR02853 78 EKVVLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK 115 (287)
T ss_pred CCccccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe
Confidence 1257889999998665 3444 4556666677777776
No 338
>PRK12861 malic enzyme; Reviewed
Probab=96.28 E-value=0.047 Score=56.87 Aligned_cols=121 Identities=17% Similarity=0.137 Sum_probs=93.2
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccCCC
Q 021995 62 GLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 141 (304)
Q Consensus 62 gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~ 141 (304)
.|+|.|.. . .-+|=-+++.+|+.+|- .+..|...+|.|.|.|..|..+++.+...|.
T Consensus 157 ~ipvf~DD-~--qGTa~v~lA~llnal~~--------------------~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~ 213 (764)
T PRK12861 157 KIPVFHDD-Q--HGTAITVSAAFINGLKV--------------------VGKSIKEVKVVTSGAGAAALACLDLLVDLGL 213 (764)
T ss_pred CCCeeccc-c--chHHHHHHHHHHHHHHH--------------------hCCChhHcEEEEECHhHHHHHHHHHHHHcCC
Confidence 79999974 2 34566678888988883 2457889999999999999999999998898
Q ss_pred ---eEEEEcCCC-----C----C---hhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEE
Q 021995 142 ---NLLYHDRVK-----M----D---PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV 206 (304)
Q Consensus 142 ---~V~~~dr~~-----~----~---~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilV 206 (304)
+++.+|+.. . . .+.++.. ...+|.|+++.+|+++=+. ..+++.++.++.|.+..++.
T Consensus 214 ~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~---~~~~L~eai~~advliG~S-----~~g~ft~e~v~~Ma~~PIIF 285 (764)
T PRK12861 214 PVENIWVTDIEGVVYRGRTTLMDPDKERFAQET---DARTLAEVIGGADVFLGLS-----AGGVLKAEMLKAMAARPLIL 285 (764)
T ss_pred ChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhc---CCCCHHHHHhcCCEEEEcC-----CCCCCCHHHHHHhccCCEEE
Confidence 689999653 1 1 1122221 2358999999999886432 13799999999999999999
Q ss_pred EcCCCch
Q 021995 207 NNARGAI 213 (304)
Q Consensus 207 n~~rg~~ 213 (304)
=.|....
T Consensus 286 aLsNPtp 292 (764)
T PRK12861 286 ALANPTP 292 (764)
T ss_pred ECCCCCc
Confidence 9998875
No 339
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.28 E-value=0.0043 Score=52.59 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=47.5
Q ss_pred EEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCCCC
Q 021995 120 VGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPLT 184 (304)
Q Consensus 120 vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVi~~~p~~ 184 (304)
|.|+|. |.+|+.+++.|...|++|+++.|++.+.+. ..+++. .+++.+.++.+|.|+.+++..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence 678995 999999999999999999999997654332 223221 134567788999999998644
No 340
>PRK05086 malate dehydrogenase; Provisional
Probab=96.26 E-value=0.02 Score=53.74 Aligned_cols=95 Identities=25% Similarity=0.310 Sum_probs=58.5
Q ss_pred CEEEEEee-ChhhHHHHHHhc---cCCCeEEEEcCCCCCh----hHHH-h--cCcee--cCCHHhhcCcCCEEEEcCCCC
Q 021995 118 KTVGTVGC-GRIGKLLLQRLK---PFNCNLLYHDRVKMDP----QLEK-E--TGAKF--EEDLDTMLPKCDIVVVNTPLT 184 (304)
Q Consensus 118 ~~vgIIG~-G~IG~~lA~~l~---~~G~~V~~~dr~~~~~----~~~~-~--~g~~~--~~~l~ell~~aDvVi~~~p~~ 184 (304)
++|+|||. |.+|+.++..+. ..+.++..+|+++... +... . ..+.. .+++.+.++++|+|++|.-..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 58999999 999999997773 4566889999865321 1111 1 01111 246667889999999987532
Q ss_pred hh---hh-cc------ccHHHHhcC---CCCCEEEEcCCCc
Q 021995 185 EK---TR-GM------FDKDRIAKM---KKGVLIVNNARGA 212 (304)
Q Consensus 185 ~~---t~-~~------i~~~~l~~m---k~g~ilVn~~rg~ 212 (304)
.. ++ .+ +-++..+.| .+.+++++++..-
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 11 01 11 112333333 5778999998654
No 341
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=96.26 E-value=0.1 Score=49.91 Aligned_cols=68 Identities=16% Similarity=0.281 Sum_probs=49.8
Q ss_pred ccCCCEEEEEeeC--------hhhHHHHHHhccCCCeEEEEcCCCC--ChhH-------HHhcCc--eecCCHHhhcCcC
Q 021995 114 DLEGKTVGTVGCG--------RIGKLLLQRLKPFNCNLLYHDRVKM--DPQL-------EKETGA--KFEEDLDTMLPKC 174 (304)
Q Consensus 114 ~L~g~~vgIIG~G--------~IG~~lA~~l~~~G~~V~~~dr~~~--~~~~-------~~~~g~--~~~~~l~ell~~a 174 (304)
.|.|++|+|+|.| ++.++++..+..+|++|.+..|... ..+. +++.|. ...+++++.++++
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 3789999999853 4457788888899999999988642 2222 123443 3568999999999
Q ss_pred CEEEEcC
Q 021995 175 DIVVVNT 181 (304)
Q Consensus 175 DvVi~~~ 181 (304)
|+|....
T Consensus 247 Dvvyt~~ 253 (357)
T TIGR03316 247 DIVYPKS 253 (357)
T ss_pred CEEEECC
Confidence 9998763
No 342
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=96.25 E-value=0.012 Score=55.91 Aligned_cols=90 Identities=17% Similarity=0.133 Sum_probs=63.8
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-----CCHH----hhcC-cCCEEEEcCCCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLD----TMLP-KCDIVVVNTPLT 184 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-----~~l~----ell~-~aDvVi~~~p~~ 184 (304)
.|++|.|.|.|.+|..+++.++..|+ +|++.++++.+.+.++++|+... .++. ++.. ..|+++-++...
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~ 270 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV 270 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence 57899999999999999999999999 59899887766677777776321 1111 1111 478888777532
Q ss_pred hhhhccccHHHHhcCCCCCEEEEcCC
Q 021995 185 EKTRGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 185 ~~t~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
+. -...++.++++..+|.++-
T Consensus 271 ~~-----~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 271 PA-----LETAYEITRRGGTTVTAGL 291 (371)
T ss_pred HH-----HHHHHHHHhcCCEEEEEcc
Confidence 21 1355677888888888763
No 343
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=96.25 E-value=0.012 Score=54.53 Aligned_cols=87 Identities=13% Similarity=0.035 Sum_probs=57.3
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHH
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 194 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~ 194 (304)
.|+++.|+|.|.+|...++.++.+|++ |.+.+++....+.+....+ ...-++.-...|+++-++.... .+ ..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~--i~~~~~~~~g~Dvvid~~G~~~----~~-~~ 216 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV--LDPEKDPRRDYRAIYDASGDPS----LI-DT 216 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc--cChhhccCCCCCEEEECCCCHH----HH-HH
Confidence 577899999999999999999999998 5566664433333322221 1111112235788888776321 11 45
Q ss_pred HHhcCCCCCEEEEcC
Q 021995 195 RIAKMKKGVLIVNNA 209 (304)
Q Consensus 195 ~l~~mk~g~ilVn~~ 209 (304)
.++.++++..++.+|
T Consensus 217 ~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 217 LVRRLAKGGEIVLAG 231 (308)
T ss_pred HHHhhhcCcEEEEEe
Confidence 678889999988876
No 344
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=96.23 E-value=0.014 Score=55.16 Aligned_cols=90 Identities=18% Similarity=0.257 Sum_probs=63.3
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec-----CCH----HhhcC--cCCEEEEcCCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDL----DTMLP--KCDIVVVNTPL 183 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~-----~~l----~ell~--~aDvVi~~~p~ 183 (304)
.|++|.|.|.|.+|..+++.++.+|.+ |++.+++....+.++++|+..+ .+. .++.. ..|+++-++..
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~ 255 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGR 255 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence 588999999999999999999999995 8888887766677777775321 111 12222 47888877653
Q ss_pred ChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995 184 TEKTRGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 184 ~~~t~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
... + ...+..++++..+|.++-
T Consensus 256 ~~~----~-~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 256 PET----Y-KQAFYARDLAGTVVLVGV 277 (358)
T ss_pred HHH----H-HHHHHHhccCCEEEEECC
Confidence 211 1 345677788888888764
No 345
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=96.22 E-value=0.018 Score=53.87 Aligned_cols=90 Identities=20% Similarity=0.248 Sum_probs=64.2
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec---CC---HHhhcCcCCEEEEcCCCChhhhc
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKTRG 189 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~---~~---l~ell~~aDvVi~~~p~~~~t~~ 189 (304)
.|.++.|.|.|.+|+.+++.++.+|++|++.+++....+.+.++|+..+ .+ .++.-...|+++-+.+...
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~---- 244 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASH---- 244 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcc----
Confidence 5779999999999999999999999999999887655566666665321 11 1122345788887776431
Q ss_pred cccHHHHhcCCCCCEEEEcCC
Q 021995 190 MFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 190 ~i~~~~l~~mk~g~ilVn~~r 210 (304)
...+.++.++++..+++++.
T Consensus 245 -~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 245 -DLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred -hHHHHHHHhcCCCEEEEEec
Confidence 12566777888888888864
No 346
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.20 E-value=0.036 Score=54.39 Aligned_cols=125 Identities=18% Similarity=0.254 Sum_probs=78.6
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhH----HHhcCceec--CCHHhhcCcCCEEEEc--CCCChh
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL----EKETGAKFE--EDLDTMLPKCDIVVVN--TPLTEK 186 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~----~~~~g~~~~--~~l~ell~~aDvVi~~--~p~~~~ 186 (304)
..+++|.|+|+|.-|.++++.|...|++|+++|.++.+... ....++... .-..+....+|+|+.. +|.+..
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p 84 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHP 84 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCH
Confidence 44999999999999999999999999999999976644111 112333221 1112567889999886 333221
Q ss_pred -h-------hccc-cHHHHhcC-CCC-CEEEEcCCCchhchHHHHHHHHc--------CCceEEEeecCCCC
Q 021995 187 -T-------RGMF-DKDRIAKM-KKG-VLIVNNARGAIMDTQAVVDACSS--------GHIAGYSGDVWNPQ 239 (304)
Q Consensus 187 -t-------~~~i-~~~~l~~m-k~g-~ilVn~~rg~~vd~~aL~~aL~~--------g~i~ga~lDV~~~e 239 (304)
. ..++ +-+++-+. ++. .+-|--+.|+.-.+.-+...|++ |.|...++|+.+++
T Consensus 85 ~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~ 156 (448)
T COG0771 85 LVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQA 156 (448)
T ss_pred HHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhccc
Confidence 0 0122 22334443 123 44455556887777777777766 45677788888763
No 347
>PLN02740 Alcohol dehydrogenase-like
Probab=96.19 E-value=0.015 Score=55.62 Aligned_cols=90 Identities=17% Similarity=0.116 Sum_probs=61.8
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec---C----CHHh----hcC-cCCEEEEcCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE---E----DLDT----MLP-KCDIVVVNTP 182 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~---~----~l~e----ll~-~aDvVi~~~p 182 (304)
.|++|.|+|.|.+|..+++.++.+|. +|++.++++...+.++++|+... . ++.+ +.. ..|+++-++.
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G 277 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECAG 277 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence 58899999999999999999999999 59999987777777777775321 1 1222 121 4788877765
Q ss_pred CChhhhccccHHHHhcCCCC-CEEEEcCC
Q 021995 183 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR 210 (304)
Q Consensus 183 ~~~~t~~~i~~~~l~~mk~g-~ilVn~~r 210 (304)
.... -.+.+..++++ ..++.++-
T Consensus 278 ~~~~-----~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 278 NVEV-----LREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred ChHH-----HHHHHHhhhcCCCEEEEEcc
Confidence 3211 13555667665 66666653
No 348
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.14 E-value=0.024 Score=55.40 Aligned_cols=108 Identities=17% Similarity=0.183 Sum_probs=64.7
Q ss_pred CEEEEEeeChhhHHHHHHhccC----------CCeEE-EEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCC
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPF----------NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLT 184 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~----------G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvVi~~~p~~ 184 (304)
.+|||+|+|.+|+.+++.+... +.+|. +++++..........+...+.++++++. +.|+|+.+++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 4899999999999998877432 45644 5677543322111122345578899985 479999887653
Q ss_pred hhhhccccHHHHhcCCCCCEEEEcCCCchh-chHHHHHHHHcCCce
Q 021995 185 EKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA 229 (304)
Q Consensus 185 ~~t~~~i~~~~l~~mk~g~ilVn~~rg~~v-d~~aL~~aL~~g~i~ 229 (304)
.... .-..+.|+.|.-+|..--+... .-+.|.++.++....
T Consensus 84 ~~~~----~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~ 125 (426)
T PRK06349 84 EPAR----ELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD 125 (426)
T ss_pred hHHH----HHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence 2211 2223556677666644332222 336677777666654
No 349
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.11 E-value=0.015 Score=50.11 Aligned_cols=66 Identities=14% Similarity=0.081 Sum_probs=48.2
Q ss_pred CEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc-----CceecCCHHhhcCcCCEEEEcCCC
Q 021995 118 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-----GAKFEEDLDTMLPKCDIVVVNTPL 183 (304)
Q Consensus 118 ~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~-----g~~~~~~l~ell~~aDvVi~~~p~ 183 (304)
++|+|||. |.+|+.+++-++..|++|+++-|++.+....+.. .+.-.+++.+.+...|+|+.+...
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence 58999995 9999999999999999999999987443321111 111123445788999999987643
No 350
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.11 E-value=0.013 Score=57.96 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=72.7
Q ss_pred ccccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCC-----hhHHHhcCceec--CCHHhhcCcCCEEEEcCC--
Q 021995 112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-----PQLEKETGAKFE--EDLDTMLPKCDIVVVNTP-- 182 (304)
Q Consensus 112 ~~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~-----~~~~~~~g~~~~--~~l~ell~~aDvVi~~~p-- 182 (304)
+..+.+++|.|||.|.+|.++|+.|+..|++|+++|+.... .+..++.|+... ... +....+|+|+++.-
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~-~~~~~~D~Vv~s~Gi~ 89 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGP-TLPEDTDLVVTSPGWR 89 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc-cccCCCCEEEECCCcC
Confidence 34678999999999999999999999999999999965421 122334566442 111 24457999988753
Q ss_pred -CChhh-----hc--cccH-HHH-hcCCC----CCEEEEcCCCchhchHHHHHHHHcCC
Q 021995 183 -LTEKT-----RG--MFDK-DRI-AKMKK----GVLIVNNARGAIMDTQAVVDACSSGH 227 (304)
Q Consensus 183 -~~~~t-----~~--~i~~-~~l-~~mk~----g~ilVn~~rg~~vd~~aL~~aL~~g~ 227 (304)
.++.. .+ ++.+ +++ ..+.+ ..+-|--+.|+.-...-+...|+...
T Consensus 90 ~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g 148 (480)
T PRK01438 90 PDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAG 148 (480)
T ss_pred CCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcC
Confidence 33311 11 2222 333 33322 24556566788887777778887633
No 351
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.07 E-value=0.0059 Score=58.59 Aligned_cols=64 Identities=22% Similarity=0.300 Sum_probs=44.2
Q ss_pred EEEEeeChhhHHHHHHhccCC-C-eEEEEcCCCCChhHHHh--c--Cce-------ecCCHHhhcCcCCEEEEcCCC
Q 021995 120 VGTVGCGRIGKLLLQRLKPFN-C-NLLYHDRVKMDPQLEKE--T--GAK-------FEEDLDTMLPKCDIVVVNTPL 183 (304)
Q Consensus 120 vgIIG~G~IG~~lA~~l~~~G-~-~V~~~dr~~~~~~~~~~--~--g~~-------~~~~l~ell~~aDvVi~~~p~ 183 (304)
|+|+|.|.+|+.+++.|...+ . +|++.||+..+.+...+ . .+. ..++++++++++|+|+.|+|.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 789999999999999998765 5 89999997654333322 1 111 113477899999999999974
No 352
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=96.03 E-value=0.031 Score=51.45 Aligned_cols=66 Identities=21% Similarity=0.183 Sum_probs=46.3
Q ss_pred CCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHH-HhcCceecCCHHhhcCcCCEEEEcCCCC
Q 021995 117 GKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLE-KETGAKFEEDLDTMLPKCDIVVVNTPLT 184 (304)
Q Consensus 117 g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~-~~~g~~~~~~l~ell~~aDvVi~~~p~~ 184 (304)
++++.|+|.|..+++++..|...|+. |.+++|+..+.+.. ...+......+ ....+|+|+.|+|..
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~G 189 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPIG 189 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCccc
Confidence 57899999999999999999999985 99999986443332 22332211111 124589999999853
No 353
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=95.98 E-value=0.02 Score=53.15 Aligned_cols=89 Identities=22% Similarity=0.151 Sum_probs=63.8
Q ss_pred CCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec------CCHHhhc-----CcCCEEEEcCCC
Q 021995 116 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------EDLDTML-----PKCDIVVVNTPL 183 (304)
Q Consensus 116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~------~~l~ell-----~~aDvVi~~~p~ 183 (304)
.|.+|.|.| .|.+|+.+++.++.+|++|++.+++..+.+.++++|+..+ +++.+.+ ...|+++-++..
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G~ 217 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGG 217 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCCH
Confidence 578999999 5999999999999999999988877666666667775321 1232221 246888776652
Q ss_pred ChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995 184 TEKTRGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 184 ~~~t~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
+. + .+.++.++++..+|..+.
T Consensus 218 -~~----~-~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 218 -EF----S-NTVIGQMKKFGRIAICGA 238 (325)
T ss_pred -HH----H-HHHHHHhCcCcEEEEecc
Confidence 11 1 567788899999988874
No 354
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.97 E-value=0.013 Score=54.54 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=47.3
Q ss_pred CEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCC
Q 021995 118 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTP 182 (304)
Q Consensus 118 ~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVi~~~p 182 (304)
++|.|.| .|.+|+.+++.|...|++|.+.+|+..+.......+++. .+++.++++.+|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4789999 599999999999999999999998753322222233321 2346678999999987654
No 355
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=95.97 E-value=0.025 Score=52.23 Aligned_cols=90 Identities=18% Similarity=0.154 Sum_probs=62.7
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhc--CcCCEEEEcCCCChhhhcccc
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML--PKCDIVVVNTPLTEKTRGMFD 192 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell--~~aDvVi~~~p~~~~t~~~i~ 192 (304)
-.|.+|.|.|.|.+|+.+++.++..|.+|++.+.++...+.++++|+....+..+.. ...|+++-+...... -
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~g~~~~-----~ 228 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEATGSPSG-----L 228 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECCCChHH-----H
Confidence 357899999999999999999999999998888766556666667764332222211 347888877643211 1
Q ss_pred HHHHhcCCCCCEEEEcC
Q 021995 193 KDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 193 ~~~l~~mk~g~ilVn~~ 209 (304)
...++.++++..++..+
T Consensus 229 ~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 229 ELALRLVRPRGTVVLKS 245 (319)
T ss_pred HHHHHHhhcCCEEEEEc
Confidence 45566778888777654
No 356
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=95.95 E-value=0.026 Score=52.71 Aligned_cols=90 Identities=17% Similarity=0.237 Sum_probs=61.2
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHh-h--cCcCCEEEEcCCCChhh
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDT-M--LPKCDIVVVNTPLTEKT 187 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~e-l--l~~aDvVi~~~p~~~~t 187 (304)
.|++|.|.|.|.+|+.+++.++.+|.+|++.+++....+.++++|+... .++.+ + +...|+++-+.....
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~~-- 240 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATAPNAK-- 240 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECCCchH--
Confidence 5789999999999999999999999999999887655666666665321 11211 1 134677776543211
Q ss_pred hccccHHHHhcCCCCCEEEEcCC
Q 021995 188 RGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 188 ~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
. -...+..++++..+|+++.
T Consensus 241 --~-~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 241 --A-ISALVGGLAPRGKLLILGA 260 (333)
T ss_pred --H-HHHHHHHcccCCEEEEEec
Confidence 1 2455677788888887763
No 357
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.94 E-value=0.028 Score=54.91 Aligned_cols=92 Identities=18% Similarity=0.128 Sum_probs=59.5
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc--Cceec----CC---H-HhhcCcCCEEEEcCCCC
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--GAKFE----ED---L-DTMLPKCDIVVVNTPLT 184 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~--g~~~~----~~---l-~ell~~aDvVi~~~p~~ 184 (304)
+..+++.|+|+|.+|+.+++.|...|.+|+++|+++...+...+. +.... .+ | +.-+.++|.|+++++..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 346889999999999999999999999999999876543333332 22111 12 2 12357899999888865
Q ss_pred hhhhccccHHHHhcCCCCCEEEEc
Q 021995 185 EKTRGMFDKDRIAKMKKGVLIVNN 208 (304)
Q Consensus 185 ~~t~~~i~~~~l~~mk~g~ilVn~ 208 (304)
.. +++-....+.+....+++-+
T Consensus 309 ~~--n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 309 EA--NILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred HH--HHHHHHHHHHhCCCeEEEEE
Confidence 43 33323333445554455433
No 358
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=95.91 E-value=0.022 Score=54.20 Aligned_cols=89 Identities=19% Similarity=0.142 Sum_probs=59.5
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceecC-------CHHh----hc-CcCCEEEEcCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEE-------DLDT----ML-PKCDIVVVNTP 182 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~-------~l~e----ll-~~aDvVi~~~p 182 (304)
.|.+|.|+|.|.+|...++.++.+|. +|++.++++.+.+.++++|+...- ++.+ +. ...|+++-++.
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G 264 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECIG 264 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECCC
Confidence 58899999999999999999999999 799998877666667777753211 1111 11 14677777665
Q ss_pred CChhhhccccHHHHhcCCCC-CEEEEcC
Q 021995 183 LTEKTRGMFDKDRIAKMKKG-VLIVNNA 209 (304)
Q Consensus 183 ~~~~t~~~i~~~~l~~mk~g-~ilVn~~ 209 (304)
.... -.+.++.++++ ..++.++
T Consensus 265 ~~~~-----~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 265 NVNV-----MRAALECCHKGWGESIIIG 287 (368)
T ss_pred CHHH-----HHHHHHHhhcCCCeEEEEe
Confidence 3211 13455666664 6666665
No 359
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=95.91 E-value=0.028 Score=50.75 Aligned_cols=91 Identities=18% Similarity=0.104 Sum_probs=63.8
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcC-ceecCCHH-hh--cCcCCEEEEcCCCChhhhcc
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETG-AKFEEDLD-TM--LPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g-~~~~~~l~-el--l~~aDvVi~~~p~~~~t~~~ 190 (304)
.|.++.|.|.|.+|+.+++.++..|.+ |++.+++....+.+++.| ........ +. -...|+++.++.... .
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~----~ 172 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS----A 172 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH----H
Confidence 578999999999999999999999999 988887665555556665 22111111 11 135888887765322 1
Q ss_pred ccHHHHhcCCCCCEEEEcCCC
Q 021995 191 FDKDRIAKMKKGVLIVNNARG 211 (304)
Q Consensus 191 i~~~~l~~mk~g~ilVn~~rg 211 (304)
-...+..++++..+++++-.
T Consensus 173 -~~~~~~~l~~~g~~~~~g~~ 192 (277)
T cd08255 173 -LETALRLLRDRGRVVLVGWY 192 (277)
T ss_pred -HHHHHHHhcCCcEEEEEecc
Confidence 25667888999999988754
No 360
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.91 E-value=0.0086 Score=49.52 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=44.9
Q ss_pred CEEEEEee-ChhhHHHHHHhc--cCCCeEEEEcCCCCChh-HHHhc---------CceecCCHHhhcCcCCEEEEcCC
Q 021995 118 KTVGTVGC-GRIGKLLLQRLK--PFNCNLLYHDRVKMDPQ-LEKET---------GAKFEEDLDTMLPKCDIVVVNTP 182 (304)
Q Consensus 118 ~~vgIIG~-G~IG~~lA~~l~--~~G~~V~~~dr~~~~~~-~~~~~---------g~~~~~~l~ell~~aDvVi~~~p 182 (304)
.+|+|||. |.+|+.+|..|. .++-++..+|++....+ .+.++ .........+.+++||+|+++..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 48999999 999999999886 45568999998642111 11111 11222355678899999999874
No 361
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=95.87 E-value=0.023 Score=52.69 Aligned_cols=92 Identities=25% Similarity=0.230 Sum_probs=62.6
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCcee-c----CCHH--h--hcCcCCEEEEcCCCCh
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKF-E----EDLD--T--MLPKCDIVVVNTPLTE 185 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~-~----~~l~--e--ll~~aDvVi~~~p~~~ 185 (304)
.|.+|.|+|.|.+|+.+++.+++.|++ |++.+++....+..++.|+.. . .+.. . .-...|+++-+.+...
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~~ 238 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVPK 238 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCChH
Confidence 578999999999999999999999998 788887665445555555421 1 1111 0 1245788887765321
Q ss_pred hhhccccHHHHhcCCCCCEEEEcCCCc
Q 021995 186 KTRGMFDKDRIAKMKKGVLIVNNARGA 212 (304)
Q Consensus 186 ~t~~~i~~~~l~~mk~g~ilVn~~rg~ 212 (304)
...+.++.|+++..+|+++...
T Consensus 239 -----~~~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 239 -----TLEQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred -----HHHHHHHHHhcCCEEEEEecCC
Confidence 1245677788888888887543
No 362
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.87 E-value=0.019 Score=50.75 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=33.2
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCC
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV 149 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~ 149 (304)
..|..++|+|||+|.+|..+++.|...|.. +..+|..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 368999999999999999999999988986 8888876
No 363
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=95.86 E-value=0.022 Score=53.43 Aligned_cols=89 Identities=20% Similarity=0.225 Sum_probs=58.4
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec---C--CHH---hhcC--cCC-EEEEcCCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE---E--DLD---TMLP--KCD-IVVVNTPL 183 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~---~--~l~---ell~--~aD-vVi~~~p~ 183 (304)
.|++|.|.|.|.+|..+++.++.+|.+ |++.+++....+.++++|+... . +.+ ++.. ..| +++-|+..
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G~ 239 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAGV 239 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCCC
Confidence 578999999999999999999999997 6788876655566666665321 0 111 1221 345 55555542
Q ss_pred ChhhhccccHHHHhcCCCCCEEEEcC
Q 021995 184 TEKTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 184 ~~~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
. . .+ .+.++.++++..++.++
T Consensus 240 ~-~---~~-~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 240 P-Q---TV-ELAIEIAGPRAQLALVG 260 (347)
T ss_pred H-H---HH-HHHHHHhhcCCEEEEEc
Confidence 1 1 11 45567777777777775
No 364
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=95.86 E-value=0.038 Score=51.88 Aligned_cols=90 Identities=21% Similarity=0.257 Sum_probs=63.4
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-----CCH----HhhcC--cCCEEEEcCCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDL----DTMLP--KCDIVVVNTPL 183 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-----~~l----~ell~--~aDvVi~~~p~ 183 (304)
.|++|.|.|.|.+|+.+++.++..|+ +|++.+++....+.+.++|+... .++ .++.. ..|+++-+...
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~ 251 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGV 251 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCC
Confidence 57899999999999999999999999 78888876655555555665321 111 22332 38888887753
Q ss_pred ChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995 184 TEKTRGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 184 ~~~t~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
... -.+.++.++++..++.++.
T Consensus 252 ~~~-----~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 252 QAT-----LDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred HHH-----HHHHHHhccCCCEEEEEcc
Confidence 221 1456777888888888874
No 365
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=95.85 E-value=0.11 Score=48.61 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=51.8
Q ss_pred ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChh-------HHHhcC-ceecCCHHhhcCcCCEEEEc
Q 021995 114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-------LEKETG-AKFEEDLDTMLPKCDIVVVN 180 (304)
Q Consensus 114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~-------~~~~~g-~~~~~~l~ell~~aDvVi~~ 180 (304)
.+.|++|++||- +++.++++..+..+|++|.+..|.....+ .+++.| +....++++.++++|+|..-
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d 225 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTD 225 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence 478999999997 78999999999999999999988553211 112223 34457899999999999874
No 366
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.85 E-value=0.015 Score=55.10 Aligned_cols=37 Identities=24% Similarity=0.259 Sum_probs=33.9
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCC
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV 149 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~ 149 (304)
..|..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999999999999998 78899875
No 367
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=95.85 E-value=0.014 Score=56.00 Aligned_cols=63 Identities=21% Similarity=0.400 Sum_probs=45.0
Q ss_pred CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhH-HHhcCc-eecC---CHHhhcCcCCEEEE
Q 021995 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGA-KFEE---DLDTMLPKCDIVVV 179 (304)
Q Consensus 117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~-~~~~g~-~~~~---~l~ell~~aDvVi~ 179 (304)
.++|||||-|..|+.++..++.+|++|+++|+++..+.. ..+.-+ ..+. .+.++++.||+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 378999999999999999999999999999987643221 111101 0122 35678889998864
No 368
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.84 E-value=0.017 Score=52.30 Aligned_cols=37 Identities=27% Similarity=0.189 Sum_probs=32.6
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCC
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV 149 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~ 149 (304)
..|..++|+|||+|.+|..+++.|...|. ++.++|..
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46899999999999999999999998887 57787764
No 369
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.82 E-value=0.015 Score=47.91 Aligned_cols=79 Identities=16% Similarity=0.264 Sum_probs=46.4
Q ss_pred EEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcC
Q 021995 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM 199 (304)
Q Consensus 120 vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~m 199 (304)
+-|+|.|.+|+++++.++.+|++|+++|+.+. .++.++-+ .+.+.. . + .+.+ .+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e------------------~~~~~~~~-~~~~~~-~---~--~~~~-~~ 54 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE------------------RFPEADEV-ICIPPD-D---I--LEDL-EI 54 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC------------------C-TTSSEE-ECSHHH-H---H--HHHC--S
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc------------------ccCCCCcc-EecChH-H---H--Hhcc-CC
Confidence 46899999999999999999999999998532 11233332 222211 0 1 0111 34
Q ss_pred CCCCEEEEcCCCchhchHHHHHHHHc
Q 021995 200 KKGVLIVNNARGAIMDTQAVVDACSS 225 (304)
Q Consensus 200 k~g~ilVn~~rg~~vd~~aL~~aL~~ 225 (304)
.++..+| ++++.-.|...|.++|++
T Consensus 55 ~~~t~Vv-~th~h~~D~~~L~~~l~~ 79 (136)
T PF13478_consen 55 DPNTAVV-MTHDHELDAEALEAALAS 79 (136)
T ss_dssp -TT-EEE---S-CCCHHHHHHHHTTS
T ss_pred CCCeEEE-EcCCchhHHHHHHHHHcC
Confidence 5555555 778888888888887777
No 370
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=95.81 E-value=0.022 Score=47.45 Aligned_cols=86 Identities=22% Similarity=0.324 Sum_probs=55.6
Q ss_pred cCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995 115 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 193 (304)
Q Consensus 115 L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~ 193 (304)
..|++|++||+ .. +++.++..+.++.++|+++.... ...+.......++++++||+|+++-.. -..+-+ .
T Consensus 9 ~~~~~V~~VG~f~P----~~~~l~~~~~~v~v~d~~~~~~~--~~~~~~~~~~~~~~l~~aD~viiTGsT--lvN~Ti-~ 79 (147)
T PF04016_consen 9 GPGDKVGMVGYFQP----LVEKLKERGAEVRVFDLNPDNIG--EEPGDVPDEDAEEILPWADVVIITGST--LVNGTI-D 79 (147)
T ss_dssp TTTSEEEEES--HC----CHHHHCCCCSEEEEEESSGGG----SSCT-EEGGGHHHHGGG-SEEEEECHH--CCTTTH-H
T ss_pred cCCCEEEEEcCcHH----HHHHHhcCCCCEEEEECCCCCCC--CCCCcCCHHHHHHHHccCCEEEEEeee--eecCCH-H
Confidence 47899999995 33 67788888999999999762211 111111344678999999999987531 011222 4
Q ss_pred HHHhcCCCCCEEEEcC
Q 021995 194 DRIAKMKKGVLIVNNA 209 (304)
Q Consensus 194 ~~l~~mk~g~ilVn~~ 209 (304)
++++..+++..++=.|
T Consensus 80 ~iL~~~~~~~~vil~G 95 (147)
T PF04016_consen 80 DILELARNAREVILYG 95 (147)
T ss_dssp HHHHHTTTSSEEEEES
T ss_pred HHHHhCccCCeEEEEe
Confidence 6777788777777665
No 371
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=95.81 E-value=0.14 Score=50.02 Aligned_cols=96 Identities=14% Similarity=0.172 Sum_probs=62.3
Q ss_pred ccccCCCEEEEEee----------ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcC
Q 021995 112 AYDLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT 181 (304)
Q Consensus 112 ~~~L~g~~vgIIG~----------G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~ 181 (304)
+..+.|++|+|+|+ ..-+..+++.|...|++|.+|||.-...+....++.... + ...++.+|+|++++
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~-~-~~~~~~ad~vvi~t 386 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPV-S-EVKSSHYDAIIVAV 386 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccc-h-hhhhcCCCEEEEcc
Confidence 34689999999998 567889999999999999999985322222222332111 1 22467899999998
Q ss_pred CCChhhhccccHHHH-hcCCCCCEEEEcCCCc
Q 021995 182 PLTEKTRGMFDKDRI-AKMKKGVLIVNNARGA 212 (304)
Q Consensus 182 p~~~~t~~~i~~~~l-~~mk~g~ilVn~~rg~ 212 (304)
...+ .+. ++-+.+ +.|+...++||+ |+-
T Consensus 387 ~h~~-f~~-~~~~~~~~~~~~~~~iiD~-r~~ 415 (425)
T PRK15182 387 GHQQ-FKQ-MGSEDIRGFGKDKHVLYDL-KYV 415 (425)
T ss_pred CCHH-hhc-CCHHHHHHhcCCCCEEEEC-CCC
Confidence 7543 222 344444 345545688884 544
No 372
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.81 E-value=0.024 Score=55.93 Aligned_cols=92 Identities=12% Similarity=0.098 Sum_probs=62.6
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChh-HHHhcC-ceec--CCHHhhcCcCCEEEEcCCCChhhh
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETG-AKFE--EDLDTMLPKCDIVVVNTPLTEKTR 188 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~-~~~~~g-~~~~--~~l~ell~~aDvVi~~~p~~~~t~ 188 (304)
.+|.|++|.|||-|.+|..=++.|..+|++|+++.+.-.+.- .....| +... +-.++.++.+++|+.++...
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~---- 83 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDD---- 83 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCH----
Confidence 479999999999999999989999999999999987542211 111111 1111 11235578899888887543
Q ss_pred ccccHHHHhcCCCCCEEEEcC
Q 021995 189 GMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 189 ~~i~~~~l~~mk~g~ilVn~~ 209 (304)
-+|++....++...+++|++
T Consensus 84 -~~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 84 -AVNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred -HHhHHHHHHHHHcCcEEEEC
Confidence 34566666666667788875
No 373
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.79 E-value=0.033 Score=47.69 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=28.3
Q ss_pred EEEEEeeChhhHHHHHHhccCCCe-EEEEcCCC
Q 021995 119 TVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVK 150 (304)
Q Consensus 119 ~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~ 150 (304)
+|+|||+|.+|..+++.|...|.. +..+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999999999999999988985 88888753
No 374
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=95.79 E-value=0.035 Score=52.58 Aligned_cols=91 Identities=13% Similarity=0.157 Sum_probs=63.1
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHH-HhcCceec---CC---HHhhcCcCCEEEEcCCCChhh
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKT 187 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~---~~---l~ell~~aDvVi~~~p~~~~t 187 (304)
-.|.++.|.|.|.+|..+++.++..|.+|++.+++....+.+ +++|+... .+ +.+.....|+++-+++....
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~- 257 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP- 257 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH-
Confidence 368899999999999999999999999988887654333222 34665321 11 22333457999888763221
Q ss_pred hccccHHHHhcCCCCCEEEEcCC
Q 021995 188 RGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 188 ~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
-.+.++.++++..++.++.
T Consensus 258 ----~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 258 ----LEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ----HHHHHHHhccCCEEEEECC
Confidence 1456778899999999874
No 375
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=95.79 E-value=0.22 Score=48.14 Aligned_cols=184 Identities=15% Similarity=0.133 Sum_probs=116.3
Q ss_pred hCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccC
Q 021995 60 AAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPF 139 (304)
Q Consensus 60 ~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~ 139 (304)
+..|+|.|..= .-+|-.+++.+|+.+|- .+..|+..+|.+.|.|.-|-.+++.+++.
T Consensus 165 ~~~IPvFhDDq---qGTaiv~lA~llnalk~--------------------~gk~l~d~kiv~~GAGAAgiaia~~l~~~ 221 (432)
T COG0281 165 RMNIPVFHDDQ---QGTAIVTLAALLNALKL--------------------TGKKLKDQKIVINGAGAAGIAIADLLVAA 221 (432)
T ss_pred cCCCCcccccc---cHHHHHHHHHHHHHHHH--------------------hCCCccceEEEEeCCcHHHHHHHHHHHHh
Confidence 45677777643 44667788899998872 35679999999999999999999999999
Q ss_pred CC---eEEEEcCCCCChhHH-----HhcCce-------ecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCE
Q 021995 140 NC---NLLYHDRVKMDPQLE-----KETGAK-------FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVL 204 (304)
Q Consensus 140 G~---~V~~~dr~~~~~~~~-----~~~g~~-------~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~i 204 (304)
|+ +|+.+|+...-.+.. .+.... .... ++.+..+|+++-+.- .+.+.++.++.|.++.+
T Consensus 222 g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S~-----~G~~t~e~V~~Ma~~Pi 295 (432)
T COG0281 222 GVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVSG-----VGAFTEEMVKEMAKHPI 295 (432)
T ss_pred CCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcCC-----CCCcCHHHHHHhccCCE
Confidence 98 599999864211100 000000 0111 457889999876542 28899999999999999
Q ss_pred EEEcCCCchhchHHHHHHHHcC-CceEEEeecCCCCCCCCCCCccCCCCeEEccCCCcCCHHHH-----HHHHHHHHHHH
Q 021995 205 IVNNARGAIMDTQAVVDACSSG-HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ-----LRYAAGVKDML 278 (304)
Q Consensus 205 lVn~~rg~~vd~~aL~~aL~~g-~i~ga~lDV~~~ep~~~~~~l~~~~nv~lTPHia~~t~e~~-----~~~~~~~~~~l 278 (304)
+.=++....--....+.+-..| .|-+ +.-|.. |- +..|+++-|-+.-..-+++ +.|...+.+-|
T Consensus 296 IfalaNP~pEi~Pe~a~~~~~~aaiva------TGrsd~---Pn-QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~Ai 365 (432)
T COG0281 296 IFALANPTPEITPEDAKEWGDGAAIVA------TGRSDY---PN-QVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAI 365 (432)
T ss_pred EeecCCCCccCCHHHHhhcCCCCEEEE------eCCCCC---cc-cccceeEcchhhhhhHhhccccCCHHHHHHHHHHH
Confidence 9999887743222222222222 2321 223322 21 5678999998864432221 33333444445
Q ss_pred HHHH
Q 021995 279 DRYF 282 (304)
Q Consensus 279 ~~~~ 282 (304)
-++.
T Consensus 366 A~~~ 369 (432)
T COG0281 366 ADLA 369 (432)
T ss_pred Hhhc
Confidence 5553
No 376
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.76 E-value=0.017 Score=52.09 Aligned_cols=37 Identities=27% Similarity=0.181 Sum_probs=32.3
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCC
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV 149 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~ 149 (304)
..|.+++|.|+|+|.+|..+++.|...|.. ++.+|..
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 368999999999999999999999988874 7777765
No 377
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=95.73 E-value=0.038 Score=52.42 Aligned_cols=90 Identities=16% Similarity=0.079 Sum_probs=58.9
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceecC-------CHHh----hcC-cCCEEEEcCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEE-------DLDT----MLP-KCDIVVVNTP 182 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~-------~l~e----ll~-~aDvVi~~~p 182 (304)
.|.+|.|+|.|.+|..+++.++.+|+ +|++.+++....+.++++|+...- ++.+ +.. ..|+++-++.
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~G 266 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECTG 266 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEECCC
Confidence 58899999999999999999999999 799998877666667777753211 1111 111 3677766654
Q ss_pred CChhhhccccHHHHhcCCCC-CEEEEcCC
Q 021995 183 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR 210 (304)
Q Consensus 183 ~~~~t~~~i~~~~l~~mk~g-~ilVn~~r 210 (304)
.... -...+..++++ ..++.++.
T Consensus 267 ~~~~-----~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 267 NIDA-----MISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred ChHH-----HHHHHHHhhcCCCEEEEECc
Confidence 2111 13445566664 66666653
No 378
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=95.72 E-value=0.028 Score=52.44 Aligned_cols=87 Identities=20% Similarity=0.160 Sum_probs=60.2
Q ss_pred CCEEEEEee-ChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHh-cCceec-----CCHHhhc-----CcCCEEEEcCCC
Q 021995 117 GKTVGTVGC-GRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKE-TGAKFE-----EDLDTML-----PKCDIVVVNTPL 183 (304)
Q Consensus 117 g~~vgIIG~-G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~-~g~~~~-----~~l~ell-----~~aDvVi~~~p~ 183 (304)
|++|.|.|. |.+|..+++.++.+|+ +|++.+++..+.+.+++ +|+... .++.+.+ ...|+++-++..
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~ 234 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG 234 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence 489999998 9999999999999999 79988876544444443 665321 1222211 247888877653
Q ss_pred ChhhhccccHHHHhcCCCCCEEEEcC
Q 021995 184 TEKTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 184 ~~~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
. . + .+.++.++++..+|.++
T Consensus 235 ~-~----~-~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 235 E-I----S-DTVISQMNENSHIILCG 254 (345)
T ss_pred H-H----H-HHHHHHhccCCEEEEEe
Confidence 1 1 1 56778888888888876
No 379
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.72 E-value=0.036 Score=51.62 Aligned_cols=91 Identities=18% Similarity=0.202 Sum_probs=56.4
Q ss_pred EEEEeeChhhHHHHHHhccCC--CeEEEEcCCCCChh-HHHhc-------C---ceecCCHHhhcCcCCEEEEcCCCChh
Q 021995 120 VGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKET-------G---AKFEEDLDTMLPKCDIVVVNTPLTEK 186 (304)
Q Consensus 120 vgIIG~G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~-~~~~~-------g---~~~~~~l~ell~~aDvVi~~~p~~~~ 186 (304)
|+|||.|.+|..+|..+...| .++..+|++....+ ...++ . +....+ .+.+++||+|+++......
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence 589999999999999988777 57999998653222 11111 0 111233 4678999999998753211
Q ss_pred ---hh--------cccc--HHHHhcCCCCCEEEEcCCC
Q 021995 187 ---TR--------GMFD--KDRIAKMKKGVLIVNNARG 211 (304)
Q Consensus 187 ---t~--------~~i~--~~~l~~mk~g~ilVn~~rg 211 (304)
++ .++. .+.+....|++++|+++..
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP 117 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNP 117 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCh
Confidence 11 1110 1122334588999999843
No 380
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=95.69 E-value=0.033 Score=51.63 Aligned_cols=90 Identities=18% Similarity=0.257 Sum_probs=62.9
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-CC----H-HhhcCcCCEEEEcCCCChhhhc
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-ED----L-DTMLPKCDIVVVNTPLTEKTRG 189 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-~~----l-~ell~~aDvVi~~~p~~~~t~~ 189 (304)
.|.+|.|+|.|.+|+.+++.++.+|++|++.+++....+..++.|.... .. . .......|+++-++....
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~---- 237 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA---- 237 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH----
Confidence 5789999999999999999999999999999887655555555554211 11 1 111235788887764321
Q ss_pred cccHHHHhcCCCCCEEEEcCC
Q 021995 190 MFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 190 ~i~~~~l~~mk~g~ilVn~~r 210 (304)
...+.+..|+++..+|+++.
T Consensus 238 -~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 238 -AAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -HHHHHHHhcccCCEEEEECC
Confidence 12566788999999998864
No 381
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=95.67 E-value=0.035 Score=52.72 Aligned_cols=91 Identities=20% Similarity=0.128 Sum_probs=59.0
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec---C----CHHh----hc-CcCCEEEEcC
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE---E----DLDT----ML-PKCDIVVVNT 181 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~---~----~l~e----ll-~~aDvVi~~~ 181 (304)
-.|.+|.|+|.|.+|..+++.++.+|. +|++.+++..+.+.++++|+..+ . ++.+ +. ...|+|+-+.
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~ 262 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECT 262 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEECC
Confidence 358899999999999999999999999 68888887655566666665211 0 0111 11 2467777665
Q ss_pred CCChhhhccccHHHHhcCCCC-CEEEEcCC
Q 021995 182 PLTEKTRGMFDKDRIAKMKKG-VLIVNNAR 210 (304)
Q Consensus 182 p~~~~t~~~i~~~~l~~mk~g-~ilVn~~r 210 (304)
.... . -.+.+..|+++ ..+|.++.
T Consensus 263 g~~~----~-~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 263 GNAD----L-MNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CChH----H-HHHHHHhcccCCCEEEEEcC
Confidence 4221 1 13456667664 67766653
No 382
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=95.60 E-value=0.029 Score=52.47 Aligned_cols=88 Identities=25% Similarity=0.200 Sum_probs=61.4
Q ss_pred CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh-cCceec------CCHHhhc-----CcCCEEEEcCC
Q 021995 116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKFE------EDLDTML-----PKCDIVVVNTP 182 (304)
Q Consensus 116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~-~g~~~~------~~l~ell-----~~aDvVi~~~p 182 (304)
.|++|.|.|. |.+|+.+++.++.+|++|++..++..+.+..++ +|+... .++.+.+ ...|+++-++.
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g 230 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVG 230 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCC
Confidence 5889999998 999999999999999999888876655555555 665211 1222211 24678877664
Q ss_pred CChhhhccccHHHHhcCCCCCEEEEcC
Q 021995 183 LTEKTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
. . . -.+.++.++++..++.++
T Consensus 231 ~-~----~-~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 231 G-K----M-LDAVLLNMNLHGRIAACG 251 (338)
T ss_pred H-H----H-HHHHHHHhccCcEEEEec
Confidence 2 1 1 146677788888888876
No 383
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.60 E-value=0.029 Score=55.51 Aligned_cols=113 Identities=17% Similarity=0.193 Sum_probs=70.3
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCC-Chh---HHHhcCcee-cCCHHhhcCcCCEEEEcC--CCC-hh
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQ---LEKETGAKF-EEDLDTMLPKCDIVVVNT--PLT-EK 186 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~-~~~---~~~~~g~~~-~~~l~ell~~aDvVi~~~--p~~-~~ 186 (304)
+.|++|+|+|+|.-|.+.++.|...|++|+++|.+.. ... ..++.+... .....+.+.++|+|+..- |.+ |.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~ 85 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE 85 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence 5689999999999999999999999999999996432 111 111211111 111235567899987753 322 21
Q ss_pred h-------hccccHHH--Hhc-CC-----CCCEEEEcCCCchhchHHHHHHHHcCC
Q 021995 187 T-------RGMFDKDR--IAK-MK-----KGVLIVNNARGAIMDTQAVVDACSSGH 227 (304)
Q Consensus 187 t-------~~~i~~~~--l~~-mk-----~g~ilVn~~rg~~vd~~aL~~aL~~g~ 227 (304)
. ..++.+-. +.. ++ ...+-|--+.|+.-...-+.+.|+...
T Consensus 86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g 141 (468)
T PRK04690 86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAG 141 (468)
T ss_pred HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcC
Confidence 1 11343333 333 32 135566666788888888888887643
No 384
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=95.60 E-value=0.093 Score=51.11 Aligned_cols=109 Identities=13% Similarity=0.183 Sum_probs=70.5
Q ss_pred EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChh-----HHH-hcCceec--CCHHhhcCcCCEEEEcC--CC-Chhh
Q 021995 119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-----LEK-ETGAKFE--EDLDTMLPKCDIVVVNT--PL-TEKT 187 (304)
Q Consensus 119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~-----~~~-~~g~~~~--~~l~ell~~aDvVi~~~--p~-~~~t 187 (304)
++.|||+|.+|.++|+.|+..|++|.++|....... ..+ ..|+... .+ .+.+.++|+|+..- |. +|..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 478999999999999999999999999997543211 112 2365432 23 45567899887653 32 2321
Q ss_pred h-------ccccH-HHHhc-CCCCCEEEEcCCCchhchHHHHHHHHcCCc
Q 021995 188 R-------GMFDK-DRIAK-MKKGVLIVNNARGAIMDTQAVVDACSSGHI 228 (304)
Q Consensus 188 ~-------~~i~~-~~l~~-mk~g~ilVn~~rg~~vd~~aL~~aL~~g~i 228 (304)
. .++.+ +++.. ++...+-|--+.|+.-...-+...|+....
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~ 129 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGL 129 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 1 12322 33333 344466677778999888888888886543
No 385
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=95.57 E-value=0.099 Score=50.58 Aligned_cols=67 Identities=16% Similarity=0.323 Sum_probs=50.9
Q ss_pred ccCCCEEEEEee-----C---hhhHHHHHHhccCCCeEEEEcCCCC--ChhH-------HHhcC--ceecCCHHhhcCcC
Q 021995 114 DLEGKTVGTVGC-----G---RIGKLLLQRLKPFNCNLLYHDRVKM--DPQL-------EKETG--AKFEEDLDTMLPKC 174 (304)
Q Consensus 114 ~L~g~~vgIIG~-----G---~IG~~lA~~l~~~G~~V~~~dr~~~--~~~~-------~~~~g--~~~~~~l~ell~~a 174 (304)
.+.|++|+|+|- | ++.++++..+..+|++|.+..|..- .++. +++.| +...+++++.++++
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a 263 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA 263 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 478999999985 5 5668999999999999999988642 2221 22334 34568999999999
Q ss_pred CEEEEc
Q 021995 175 DIVVVN 180 (304)
Q Consensus 175 DvVi~~ 180 (304)
|+|..-
T Consensus 264 DvVYtd 269 (395)
T PRK07200 264 DIVYPK 269 (395)
T ss_pred CEEEEc
Confidence 999876
No 386
>PTZ00325 malate dehydrogenase; Provisional
Probab=95.56 E-value=0.034 Score=52.36 Aligned_cols=69 Identities=23% Similarity=0.223 Sum_probs=46.7
Q ss_pred ccCCCEEEEEee-ChhhHHHHHHhcc--CCCeEEEEcCCCCChhHHHh-------cCceec---CCHHhhcCcCCEEEEc
Q 021995 114 DLEGKTVGTVGC-GRIGKLLLQRLKP--FNCNLLYHDRVKMDPQLEKE-------TGAKFE---EDLDTMLPKCDIVVVN 180 (304)
Q Consensus 114 ~L~g~~vgIIG~-G~IG~~lA~~l~~--~G~~V~~~dr~~~~~~~~~~-------~g~~~~---~~l~ell~~aDvVi~~ 180 (304)
-++.++|+|||. |.+|..+|..|.. ...++..+|+..... .+.+ ..+... .+..+.+++||+|+++
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g-~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVit 83 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPG-VAADLSHIDTPAKVTGYADGELWEKALRGADLVLIC 83 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcc-cccchhhcCcCceEEEecCCCchHHHhCCCCEEEEC
Confidence 467789999999 9999999998874 446799999832111 1111 112212 1225789999999988
Q ss_pred CCC
Q 021995 181 TPL 183 (304)
Q Consensus 181 ~p~ 183 (304)
+-.
T Consensus 84 aG~ 86 (321)
T PTZ00325 84 AGV 86 (321)
T ss_pred CCC
Confidence 643
No 387
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.56 E-value=0.034 Score=54.52 Aligned_cols=110 Identities=16% Similarity=0.205 Sum_probs=70.1
Q ss_pred CCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCCh--hHHHh--cCceec---CCHHhhcCcCCEEEEcC--CC-Chh
Q 021995 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKE--TGAKFE---EDLDTMLPKCDIVVVNT--PL-TEK 186 (304)
Q Consensus 117 g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~--~~~~~--~g~~~~---~~l~ell~~aDvVi~~~--p~-~~~ 186 (304)
+-+|+|+|+|.+|.++|+.|+..|++|.++|...... +..++ .|+... .+ .+.+.++|+|+..- |. +|.
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~-~~~~~~~d~vV~sp~i~~~~p~ 84 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFD-CELLVQASEIIISPGLALDTPA 84 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCC-hHHhcCCCEEEECCCCCCCCHH
Confidence 4589999999999999999999999999999754321 11222 255432 13 34567899887653 32 221
Q ss_pred hh-------ccccH-HHHhc-CCCCCEEEEcCCCchhchHHHHHHHHcCC
Q 021995 187 TR-------GMFDK-DRIAK-MKKGVLIVNNARGAIMDTQAVVDACSSGH 227 (304)
Q Consensus 187 t~-------~~i~~-~~l~~-mk~g~ilVn~~rg~~vd~~aL~~aL~~g~ 227 (304)
.. .++.+ +++.. ++...+-|--+.|+.-...-+...|+...
T Consensus 85 ~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 134 (448)
T PRK03803 85 LRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAG 134 (448)
T ss_pred HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence 11 12322 33333 34345566666798888888888887643
No 388
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=95.56 E-value=0.039 Score=51.99 Aligned_cols=90 Identities=18% Similarity=0.231 Sum_probs=61.1
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec---C--C-------HHhhc--CcCCEEEEc
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE---E--D-------LDTML--PKCDIVVVN 180 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~---~--~-------l~ell--~~aDvVi~~ 180 (304)
.|++|.|.|.|.+|+.+++.++.+|+ +|++.+++....+..+++|+... . + +.++. ...|+++-+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~ 256 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEA 256 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEEC
Confidence 68899999999999999999999999 89888876655555556665211 1 1 11222 246888776
Q ss_pred CCCChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995 181 TPLTEKTRGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 181 ~p~~~~t~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
..... . ..+.+..++++..+|.++.
T Consensus 257 ~g~~~----~-~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 257 SGHPA----A-VPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred CCChH----H-HHHHHHHhccCCEEEEEcC
Confidence 64211 1 1456677788888887763
No 389
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.55 E-value=0.022 Score=52.97 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=26.7
Q ss_pred EEEEEeeChhhHHHHHHhccCCCe-EEEEcCC
Q 021995 119 TVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV 149 (304)
Q Consensus 119 ~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~ 149 (304)
+|.|+|+|.+|..+|+.|...|.. ++.+|..
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 589999999999999999999975 7777643
No 390
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.55 E-value=0.037 Score=52.65 Aligned_cols=86 Identities=23% Similarity=0.291 Sum_probs=51.6
Q ss_pred CCCEEEEEe-eChhhHHHHHHhccCCC---eEEEE--cCCCCChhHHHhcCce-ecCCH-HhhcCcCCEEEEcCCCChhh
Q 021995 116 EGKTVGTVG-CGRIGKLLLQRLKPFNC---NLLYH--DRVKMDPQLEKETGAK-FEEDL-DTMLPKCDIVVVNTPLTEKT 187 (304)
Q Consensus 116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~---~V~~~--dr~~~~~~~~~~~g~~-~~~~l-~ell~~aDvVi~~~p~~~~t 187 (304)
...+|+|+| .|.+|+.+.+.|...++ ++.++ .++..+.. ...+.. .+.++ .+.+.++|+|++++|....
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~--~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s- 82 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKV--TFEGRDYTVEELTEDSFDGVDIALFSAGGSIS- 82 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCee--eecCceeEEEeCCHHHHcCCCEEEECCCcHHH-
Confidence 456899999 59999999999987554 33333 22211111 111111 11122 2345889999999995422
Q ss_pred hccccHHHHhcC-CCCCEEEEcC
Q 021995 188 RGMFDKDRIAKM-KKGVLIVNNA 209 (304)
Q Consensus 188 ~~~i~~~~l~~m-k~g~ilVn~~ 209 (304)
.+..+.+ +.|+.+||.|
T Consensus 83 -----~~~~~~~~~~g~~VIDlS 100 (344)
T PLN02383 83 -----KKFGPIAVDKGAVVVDNS 100 (344)
T ss_pred -----HHHHHHHHhCCCEEEECC
Confidence 3333333 5789999998
No 391
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=95.55 E-value=0.042 Score=51.58 Aligned_cols=98 Identities=16% Similarity=0.134 Sum_probs=66.5
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhcc-------CCCeEEEEcCCCCCh----hHHHh-----------------cCceecC
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKP-------FNCNLLYHDRVKMDP----QLEKE-----------------TGAKFEE 165 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~-------~G~~V~~~dr~~~~~----~~~~~-----------------~g~~~~~ 165 (304)
+..-++|+|||.|+-|+.+|+.+.. |..+|..|-+...-. ...+- ..+..+.
T Consensus 18 ~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~ 97 (372)
T KOG2711|consen 18 ERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP 97 (372)
T ss_pred hcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence 3455799999999999999998753 344565554322111 11110 1134557
Q ss_pred CHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCch
Q 021995 166 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI 213 (304)
Q Consensus 166 ~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~ 213 (304)
++.+.+.+||+++..+|.+ -+..+ -+++....|+++..|.+.-|--
T Consensus 98 dl~ea~~dADilvf~vPhQ-f~~~i-c~~l~g~vk~~~~aISL~KG~e 143 (372)
T KOG2711|consen 98 DLVEAAKDADILVFVVPHQ-FIPRI-CEQLKGYVKPGATAISLIKGVE 143 (372)
T ss_pred hHHHHhccCCEEEEeCChh-hHHHH-HHHHhcccCCCCeEEEeeccee
Confidence 8999999999999999954 22233 3677788899999999887743
No 392
>PLN02827 Alcohol dehydrogenase-like
Probab=95.54 E-value=0.045 Score=52.39 Aligned_cols=89 Identities=18% Similarity=0.112 Sum_probs=60.0
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec-C------CHHh----hcC-cCCEEEEcCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-E------DLDT----MLP-KCDIVVVNTP 182 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~-~------~l~e----ll~-~aDvVi~~~p 182 (304)
.|++|.|+|.|.+|..+++.++.+|.+ |++.+++..+.+.++++|+... . +..+ +.. ..|+++-++.
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G 272 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECVG 272 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECCC
Confidence 589999999999999999999999985 7788876666666677775321 0 1111 111 4677777665
Q ss_pred CChhhhccccHHHHhcCCCC-CEEEEcC
Q 021995 183 LTEKTRGMFDKDRIAKMKKG-VLIVNNA 209 (304)
Q Consensus 183 ~~~~t~~~i~~~~l~~mk~g-~ilVn~~ 209 (304)
.... + ...+..++++ ..+|.++
T Consensus 273 ~~~~----~-~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 273 DTGI----A-TTALQSCSDGWGLTVTLG 295 (378)
T ss_pred ChHH----H-HHHHHhhccCCCEEEEEC
Confidence 3211 1 3556667776 7777665
No 393
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=95.53 E-value=0.07 Score=50.62 Aligned_cols=67 Identities=21% Similarity=0.294 Sum_probs=49.8
Q ss_pred ccCCCEEEEEee---ChhhHHHHHHhc-cCCCeEEEEcCCCC--ChhH---HHhcC--ceecCCHHhhcCcCCEEEEc
Q 021995 114 DLEGKTVGTVGC---GRIGKLLLQRLK-PFNCNLLYHDRVKM--DPQL---EKETG--AKFEEDLDTMLPKCDIVVVN 180 (304)
Q Consensus 114 ~L~g~~vgIIG~---G~IG~~lA~~l~-~~G~~V~~~dr~~~--~~~~---~~~~g--~~~~~~l~ell~~aDvVi~~ 180 (304)
.+.|++|+++|- +++..+++..+. -+|++|.+..|... +.+. +++.| +...+++++.++++|+|...
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence 589999999997 588888888766 44999999887542 2221 12334 34567999999999999884
No 394
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.53 E-value=0.036 Score=49.49 Aligned_cols=90 Identities=11% Similarity=0.054 Sum_probs=58.6
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChh-HHHhcC-ceec---CCHHhhcCcCCEEEEcCCCChhh
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETG-AKFE---EDLDTMLPKCDIVVVNTPLTEKT 187 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~-~~~~~g-~~~~---~~l~ell~~aDvVi~~~p~~~~t 187 (304)
..+.|++|.|||.|.+|..=++.|..+|++|+++.+...+.- .....+ ++.. .+ .+.+..+++|+.++...
T Consensus 21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~-~~dl~g~~LViaATdD~--- 96 (223)
T PRK05562 21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYD-KEFIKDKHLIVIATDDE--- 96 (223)
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCC-hHHhCCCcEEEECCCCH---
Confidence 467899999999999999988999999999999998543211 111111 2111 12 23467889888887532
Q ss_pred hccccHHHHhcCCCCCEEEEc
Q 021995 188 RGMFDKDRIAKMKKGVLIVNN 208 (304)
Q Consensus 188 ~~~i~~~~l~~mk~g~ilVn~ 208 (304)
-+|.......+.-.+++|+
T Consensus 97 --~vN~~I~~~a~~~~~lvn~ 115 (223)
T PRK05562 97 --KLNNKIRKHCDRLYKLYID 115 (223)
T ss_pred --HHHHHHHHHHHHcCCeEEE
Confidence 3345555555554556665
No 395
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=95.50 E-value=0.045 Score=50.69 Aligned_cols=90 Identities=22% Similarity=0.300 Sum_probs=62.6
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHh-hcCcCCEEEEcCCCChhhhccccH
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDT-MLPKCDIVVVNTPLTEKTRGMFDK 193 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~e-ll~~aDvVi~~~p~~~~t~~~i~~ 193 (304)
..|.++.|.|.|.+|+.+++.++..|.+|++.+++....+.++++|+....+.++ .-+..|+++.+.+... .-.
T Consensus 166 ~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vD~vi~~~~~~~-----~~~ 240 (329)
T cd08298 166 KPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSDDLPPEPLDAAIIFAPVGA-----LVP 240 (329)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEeccCccCCCcccEEEEcCCcHH-----HHH
Confidence 3578999999999999999999999999998887665556666667643212111 1134677776654221 135
Q ss_pred HHHhcCCCCCEEEEcC
Q 021995 194 DRIAKMKKGVLIVNNA 209 (304)
Q Consensus 194 ~~l~~mk~g~ilVn~~ 209 (304)
+.++.++++..++..+
T Consensus 241 ~~~~~l~~~G~~v~~g 256 (329)
T cd08298 241 AALRAVKKGGRVVLAG 256 (329)
T ss_pred HHHHHhhcCCEEEEEc
Confidence 6778888888888765
No 396
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=95.49 E-value=0.03 Score=52.94 Aligned_cols=88 Identities=25% Similarity=0.225 Sum_probs=61.0
Q ss_pred CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHH-hcCceec------CCHHhhc-----CcCCEEEEcCC
Q 021995 116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE------EDLDTML-----PKCDIVVVNTP 182 (304)
Q Consensus 116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~------~~l~ell-----~~aDvVi~~~p 182 (304)
.|.+|.|.|. |.+|..+++.++.+|++|++.+++..+.+..+ ++|+..+ .++.+.+ ...|+++-++.
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG 237 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVG 237 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECCC
Confidence 5889999999 99999999999999999998887654445444 5665321 1233222 13688877665
Q ss_pred CChhhhccccHHHHhcCCCCCEEEEcC
Q 021995 183 LTEKTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
. + . -...++.++++..++.++
T Consensus 238 ~-~----~-~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 238 G-D----M-LDAALLNMKIHGRIAVCG 258 (348)
T ss_pred H-H----H-HHHHHHHhccCCEEEEEC
Confidence 2 1 1 146677788888888776
No 397
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.49 E-value=0.043 Score=53.51 Aligned_cols=72 Identities=10% Similarity=0.047 Sum_probs=53.2
Q ss_pred ccccCCCEEEEEee----------ChhhHHHHHHhccCC-CeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEc
Q 021995 112 AYDLEGKTVGTVGC----------GRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVN 180 (304)
Q Consensus 112 ~~~L~g~~vgIIG~----------G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~ 180 (304)
+.++.|++|+|+|+ ..-+..+++.|+..| .+|.+|||.-............ ..++++.+++||+|+++
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~-~~~~~~~~~~ad~vvi~ 393 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVT-LVSLDEALATADVLVML 393 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCcee-eCCHHHHHhCCCEEEEC
Confidence 34688999999997 456789999999986 9999999863221111011122 36899999999999999
Q ss_pred CCCC
Q 021995 181 TPLT 184 (304)
Q Consensus 181 ~p~~ 184 (304)
.+..
T Consensus 394 t~~~ 397 (415)
T PRK11064 394 VDHS 397 (415)
T ss_pred CCCH
Confidence 9854
No 398
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=95.48 E-value=0.044 Score=50.50 Aligned_cols=89 Identities=15% Similarity=0.073 Sum_probs=59.9
Q ss_pred CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCH--------Hhhc-CcCCEEEEcCCCCh
Q 021995 116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL--------DTML-PKCDIVVVNTPLTE 185 (304)
Q Consensus 116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l--------~ell-~~aDvVi~~~p~~~ 185 (304)
.|.+|.|+|. |.+|..+++.++..|++|++.+++....+..+++|+...-+. .++. ...|+++-+... .
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g~-~ 224 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVGG-K 224 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCcH-H
Confidence 3679999998 999999999999999999988887666666666665221110 1111 236777655532 1
Q ss_pred hhhccccHHHHhcCCCCCEEEEcCC
Q 021995 186 KTRGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 186 ~t~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
. ..+.+..++++..+|.++.
T Consensus 225 ~-----~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 225 T-----LAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred H-----HHHHHHHhhcCCEEEEEee
Confidence 1 2456777778888877763
No 399
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.47 E-value=0.046 Score=53.93 Aligned_cols=111 Identities=18% Similarity=0.290 Sum_probs=66.8
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc-Cceec-CCHHhhcCcCCEEEEcC--CC-Chhhh--
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-GAKFE-EDLDTMLPKCDIVVVNT--PL-TEKTR-- 188 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~~-~~l~ell~~aDvVi~~~--p~-~~~t~-- 188 (304)
.|++|+|+|+|.-|.++++.|+. |++|+++|..........+. ..... ....+.+.++|+|+..- |. ++...
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a 83 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA 83 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence 57899999999999999999995 99999999543322211111 00111 11234567899887753 32 22111
Q ss_pred -----ccccH-HHH-hcCCC-CCEEEEcCCCchhchHHHHHHHHcCC
Q 021995 189 -----GMFDK-DRI-AKMKK-GVLIVNNARGAIMDTQAVVDACSSGH 227 (304)
Q Consensus 189 -----~~i~~-~~l-~~mk~-g~ilVn~~rg~~vd~~aL~~aL~~g~ 227 (304)
.++.+ +++ ..+++ ..+=|--+.|+.-...-+...|+...
T Consensus 84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g 130 (454)
T PRK01368 84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNG 130 (454)
T ss_pred HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence 12322 333 33333 24555555788888888888888643
No 400
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=95.46 E-value=0.044 Score=52.05 Aligned_cols=89 Identities=20% Similarity=0.161 Sum_probs=59.8
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec---C----CHHh----hcC-cCCEEEEcCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE---E----DLDT----MLP-KCDIVVVNTP 182 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~---~----~l~e----ll~-~aDvVi~~~p 182 (304)
.|.+|.|+|.|.+|...++.++.+|+ +|++.+++..+.+.++++|+... . ++.+ +.. ..|+|+-++.
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g 265 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECIG 265 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECCC
Confidence 58899999999999999999999999 69999887766666666665321 1 1212 111 4688877664
Q ss_pred CChhhhccccHHHHhcCCCC-CEEEEcC
Q 021995 183 LTEKTRGMFDKDRIAKMKKG-VLIVNNA 209 (304)
Q Consensus 183 ~~~~t~~~i~~~~l~~mk~g-~ilVn~~ 209 (304)
.... -.+.++.++++ ..++.++
T Consensus 266 ~~~~-----~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 266 NVKV-----MRAALEACHKGWGTSVIIG 288 (368)
T ss_pred ChHH-----HHHHHHhhccCCCeEEEEc
Confidence 2211 13456667665 6666665
No 401
>PRK15076 alpha-galactosidase; Provisional
Probab=95.45 E-value=0.03 Score=54.85 Aligned_cols=114 Identities=15% Similarity=0.135 Sum_probs=68.9
Q ss_pred CEEEEEeeChhhHHHHH--Hh---ccC-CCeEEEEcCCCCChhHHH--------hcC----ceecCCHHhhcCcCCEEEE
Q 021995 118 KTVGTVGCGRIGKLLLQ--RL---KPF-NCNLLYHDRVKMDPQLEK--------ETG----AKFEEDLDTMLPKCDIVVV 179 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~--~l---~~~-G~~V~~~dr~~~~~~~~~--------~~g----~~~~~~l~ell~~aDvVi~ 179 (304)
++|+|||.|.+|...+- .+ .++ |.+|+.+|.+....+... ..+ +....++.+.+++||+|+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 48999999999955433 22 233 568999998764333111 112 2335677899999999998
Q ss_pred cCCCC--hhhh----------ccc---------------------cHH---HHhcCCCCCEEEEcCCCchhchHHHHHHH
Q 021995 180 NTPLT--EKTR----------GMF---------------------DKD---RIAKMKKGVLIVNNARGAIMDTQAVVDAC 223 (304)
Q Consensus 180 ~~p~~--~~t~----------~~i---------------------~~~---~l~~mk~g~ilVn~~rg~~vd~~aL~~aL 223 (304)
+.-.. +.-+ +++ -.+ .+....|++++||.+..--+-..++. .+
T Consensus 82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-~~ 160 (431)
T PRK15076 82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-RY 160 (431)
T ss_pred eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-cC
Confidence 86542 1110 000 011 23334689999999987766666665 33
Q ss_pred HcCCceEEE
Q 021995 224 SSGHIAGYS 232 (304)
Q Consensus 224 ~~g~i~ga~ 232 (304)
...++.|.+
T Consensus 161 ~~~rviG~c 169 (431)
T PRK15076 161 PGIKTVGLC 169 (431)
T ss_pred CCCCEEEEC
Confidence 444565544
No 402
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=95.42 E-value=0.064 Score=49.88 Aligned_cols=92 Identities=22% Similarity=0.253 Sum_probs=63.6
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCC-CeEEEEcCCCCChhHHHhcCceecCC--------HHhhcC--cCCEEEEcCCCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEED--------LDTMLP--KCDIVVVNTPLT 184 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~~~~~~g~~~~~~--------l~ell~--~aDvVi~~~p~~ 184 (304)
.|++|.|.|.|.+|..+++.++..| .+|++..+++...+..+++|+...-+ +.++.. ..|+++-+.+..
T Consensus 167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvld~~g~~ 246 (340)
T cd05284 167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVRELTGGRGADAVIDFVGSD 246 (340)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHHhCCCCCCEEEEcCCCH
Confidence 5789999999999999999999998 89988887665555556666422111 223332 478888776532
Q ss_pred hhhhccccHHHHhcCCCCCEEEEcCCCc
Q 021995 185 EKTRGMFDKDRIAKMKKGVLIVNNARGA 212 (304)
Q Consensus 185 ~~t~~~i~~~~l~~mk~g~ilVn~~rg~ 212 (304)
+. ..+.++.++++..+|.++..+
T Consensus 247 ~~-----~~~~~~~l~~~g~~i~~g~~~ 269 (340)
T cd05284 247 ET-----LALAAKLLAKGGRYVIVGYGG 269 (340)
T ss_pred HH-----HHHHHHHhhcCCEEEEEcCCC
Confidence 11 255677788888888887543
No 403
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.40 E-value=0.046 Score=53.54 Aligned_cols=114 Identities=16% Similarity=0.194 Sum_probs=72.2
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCCh--hHHHh--cCceec--CCHHhhcCcCCEEEEcC--C-CCh
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKE--TGAKFE--EDLDTMLPKCDIVVVNT--P-LTE 185 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~--~~~~~--~g~~~~--~~l~ell~~aDvVi~~~--p-~~~ 185 (304)
+.++++.|+|.|.+|.++|+.|...|++|.++|...... ....+ .|+... ...++...++|+|+... | ..|
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p 82 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP 82 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence 578999999999999999999999999999999765432 11222 254432 11234456899998753 2 222
Q ss_pred hhhc-------cc-cHHHHhc-CC---CCCEEEEcCCCchhchHHHHHHHHcCCc
Q 021995 186 KTRG-------MF-DKDRIAK-MK---KGVLIVNNARGAIMDTQAVVDACSSGHI 228 (304)
Q Consensus 186 ~t~~-------~i-~~~~l~~-mk---~g~ilVn~~rg~~vd~~aL~~aL~~g~i 228 (304)
.... ++ ..+++.. ++ ...+-|--+.|+.-...-+...|+....
T Consensus 83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~ 137 (445)
T PRK04308 83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGL 137 (445)
T ss_pred HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence 2211 22 2234333 32 2355566667888888888888876443
No 404
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=95.35 E-value=0.073 Score=48.60 Aligned_cols=90 Identities=23% Similarity=0.186 Sum_probs=60.8
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec-----CCH----Hhhc--CcCCEEEEcCCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDL----DTML--PKCDIVVVNTPL 183 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~-----~~l----~ell--~~aDvVi~~~p~ 183 (304)
.|.+|.|.|.|.+|+.+++.++..|++ |++..++....+..+++|+... .++ .++. ...|+++-+...
T Consensus 129 ~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g~ 208 (312)
T cd08269 129 AGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVGH 208 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence 578999999999999999999999999 8888776544444455554211 122 2222 247888776542
Q ss_pred ChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995 184 TEKTRGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 184 ~~~t~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
.. .....++.|+++..+++++.
T Consensus 209 ~~-----~~~~~~~~l~~~g~~~~~g~ 230 (312)
T cd08269 209 QW-----PLDLAGELVAERGRLVIFGY 230 (312)
T ss_pred HH-----HHHHHHHHhccCCEEEEEcc
Confidence 21 12456677888888888864
No 405
>PRK10083 putative oxidoreductase; Provisional
Probab=95.32 E-value=0.064 Score=49.94 Aligned_cols=91 Identities=23% Similarity=0.289 Sum_probs=61.3
Q ss_pred CCCEEEEEeeChhhHHHHHHhcc-CCCe-EEEEcCCCCChhHHHhcCceec-----CCHHhhcC----cCCEEEEcCCCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKP-FNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP----KCDIVVVNTPLT 184 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~-~G~~-V~~~dr~~~~~~~~~~~g~~~~-----~~l~ell~----~aDvVi~~~p~~ 184 (304)
.|.+|.|+|.|.+|..+++.++. +|.+ |++.+++..+.+.++++|+... .++.+.+. +.|+++-+....
T Consensus 160 ~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~g~~ 239 (339)
T PRK10083 160 EQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAACHP 239 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECCCCH
Confidence 57899999999999999999986 6986 6677876656666666776322 12323332 235666665422
Q ss_pred hhhhccccHHHHhcCCCCCEEEEcCCC
Q 021995 185 EKTRGMFDKDRIAKMKKGVLIVNNARG 211 (304)
Q Consensus 185 ~~t~~~i~~~~l~~mk~g~ilVn~~rg 211 (304)
.. -.+.++.++++..+|+++..
T Consensus 240 ~~-----~~~~~~~l~~~G~~v~~g~~ 261 (339)
T PRK10083 240 SI-----LEEAVTLASPAARIVLMGFS 261 (339)
T ss_pred HH-----HHHHHHHhhcCCEEEEEccC
Confidence 11 25667788888889888753
No 406
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.32 E-value=0.12 Score=48.78 Aligned_cols=65 Identities=18% Similarity=0.186 Sum_probs=44.2
Q ss_pred CEEEEEee-ChhhHHHHHHhccCCC-------eEEEEcCCCCC---hhHHHhc---------CceecCCHHhhcCcCCEE
Q 021995 118 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD---PQLEKET---------GAKFEEDLDTMLPKCDIV 177 (304)
Q Consensus 118 ~~vgIIG~-G~IG~~lA~~l~~~G~-------~V~~~dr~~~~---~~~~~~~---------g~~~~~~l~ell~~aDvV 177 (304)
++|+|||. |.+|..+|..|...|. ++..+|..... ...+.++ .+....+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 48999999 9999999998876554 78999984321 1111111 112223456789999999
Q ss_pred EEcCC
Q 021995 178 VVNTP 182 (304)
Q Consensus 178 i~~~p 182 (304)
+++.-
T Consensus 83 vitaG 87 (322)
T cd01338 83 LLVGA 87 (322)
T ss_pred EEeCC
Confidence 99864
No 407
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=95.31 E-value=0.16 Score=41.67 Aligned_cols=98 Identities=14% Similarity=0.249 Sum_probs=69.2
Q ss_pred HHHHHhccCCCeEEEEcCCCC----ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEE
Q 021995 131 LLLQRLKPFNCNLLYHDRVKM----DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV 206 (304)
Q Consensus 131 ~lA~~l~~~G~~V~~~dr~~~----~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilV 206 (304)
..+++|...|++|++=.-... +.+.-.+.|+...++.++++++||+|+-.-|.+ .+.++.|++|.++|
T Consensus 18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li 89 (136)
T PF05222_consen 18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLI 89 (136)
T ss_dssp HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEE
Confidence 567888888999887654322 223334458877777779999999998766543 56778899999999
Q ss_pred EcCCCchhchHHHHHHHHcCCceEEEeecCCC
Q 021995 207 NNARGAIMDTQAVVDACSSGHIAGYSGDVWNP 238 (304)
Q Consensus 207 n~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~ 238 (304)
-..... ....+++.|.+.++...++|....
T Consensus 90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 90 GFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence 887655 588899999999999887776543
No 408
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.30 E-value=0.033 Score=49.29 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=34.3
Q ss_pred ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCC
Q 021995 114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD 152 (304)
Q Consensus 114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~ 152 (304)
++.++++.|+|. |.+|+.+++.|...|++|++.+|++..
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~ 41 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEA 41 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 467899999995 899999999999999999999997643
No 409
>PRK08223 hypothetical protein; Validated
Probab=95.30 E-value=0.039 Score=51.09 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=32.4
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCC
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV 149 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~ 149 (304)
..|..++|.|||+|.+|..+++.|...|.. +..+|..
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 468999999999999999999999998874 7777754
No 410
>PRK06392 homoserine dehydrogenase; Provisional
Probab=95.27 E-value=0.068 Score=50.46 Aligned_cols=110 Identities=20% Similarity=0.269 Sum_probs=65.3
Q ss_pred EEEEEeeChhhHHHHHHhcc--------CCCeEE-EEcCCCC-------ChhHH---HhcC-c--eecC--CHHhhc-Cc
Q 021995 119 TVGTVGCGRIGKLLLQRLKP--------FNCNLL-YHDRVKM-------DPQLE---KETG-A--KFEE--DLDTML-PK 173 (304)
Q Consensus 119 ~vgIIG~G~IG~~lA~~l~~--------~G~~V~-~~dr~~~-------~~~~~---~~~g-~--~~~~--~l~ell-~~ 173 (304)
+|+|+|||++|+.+++.|.. ++.+|+ +.|++.. ..+.. .+.+ . .... ++++++ .+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~ 81 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK 81 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence 79999999999999999865 566755 4455421 01111 0101 1 1112 455553 46
Q ss_pred CCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchh-chHHHHHHHHcCCce
Q 021995 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA 229 (304)
Q Consensus 174 aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~v-d~~aL~~aL~~g~i~ 229 (304)
+|+|+=|.|....-... -..+.+.|+.|.-+|-..-|.+. ..+.|.++.+++...
T Consensus 82 ~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~ 137 (326)
T PRK06392 82 PDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRI 137 (326)
T ss_pred CCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCe
Confidence 89999998753210001 12345667888888888877775 455666666665544
No 411
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=95.25 E-value=0.063 Score=50.17 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=63.2
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec---C---CHHh----hcC-cCCEEEEcCCCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---E---DLDT----MLP-KCDIVVVNTPLT 184 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~---~---~l~e----ll~-~aDvVi~~~p~~ 184 (304)
.|++|.|.|.|.+|+.+++.++..|++|++..++....+..+++|+... . ++.+ +.. ..|+++-+....
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~ 244 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDALGIP 244 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEEcCCCH
Confidence 5789999999999999999999999999988876655555566665211 1 1211 121 478888776421
Q ss_pred hhhhccccHHHHhcCCCCCEEEEcCCC
Q 021995 185 EKTRGMFDKDRIAKMKKGVLIVNNARG 211 (304)
Q Consensus 185 ~~t~~~i~~~~l~~mk~g~ilVn~~rg 211 (304)
. .-...+..|+++..+|+++..
T Consensus 245 ~-----~~~~~~~~l~~~g~~i~~g~~ 266 (345)
T cd08260 245 E-----TCRNSVASLRKRGRHVQVGLT 266 (345)
T ss_pred H-----HHHHHHHHhhcCCEEEEeCCc
Confidence 1 124567788888889888743
No 412
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.25 E-value=0.093 Score=48.97 Aligned_cols=53 Identities=23% Similarity=0.163 Sum_probs=45.2
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceecCCHH
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLD 168 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~~l~ 168 (304)
.|++++|.|+|.+|-++++-++++|. +++++|.++.+-+.++++|+..+-+..
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~ 245 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPK 245 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChh
Confidence 58999999999999999999999997 599999998888888888875443443
No 413
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=95.24 E-value=0.06 Score=48.92 Aligned_cols=128 Identities=16% Similarity=0.135 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhccC----CC-------eEE
Q 021995 76 VAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPF----NC-------NLL 144 (304)
Q Consensus 76 vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~~----G~-------~V~ 144 (304)
+|--+++.+|+.+|- .+..|...+|.|+|.|..|-.+|+.+... |. +++
T Consensus 4 TaaV~lAgll~Al~~--------------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~ 63 (255)
T PF03949_consen 4 TAAVVLAGLLNALRV--------------------TGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIW 63 (255)
T ss_dssp HHHHHHHHHHHHHHH--------------------HTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEE
T ss_pred hHHHHHHHHHHHHHH--------------------hCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEE
Confidence 456678888888873 24568999999999999999999998776 87 488
Q ss_pred EEcCCCC------Chh-----HHHhcCc-eecCCHHhhcCcC--CEEEEcCCCChhhhccccHHHHhcCCC---CCEEEE
Q 021995 145 YHDRVKM------DPQ-----LEKETGA-KFEEDLDTMLPKC--DIVVVNTPLTEKTRGMFDKDRIAKMKK---GVLIVN 207 (304)
Q Consensus 145 ~~dr~~~------~~~-----~~~~~g~-~~~~~l~ell~~a--DvVi~~~p~~~~t~~~i~~~~l~~mk~---g~ilVn 207 (304)
.+|+... ... .++...- ....+|.|+++.+ |+++=+.. ..+++.++.++.|.+ ..++.=
T Consensus 64 lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~----~~g~ft~evv~~Ma~~~erPIIF~ 139 (255)
T PF03949_consen 64 LVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSG----QGGAFTEEVVRAMAKHNERPIIFP 139 (255)
T ss_dssp EEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSS----STTSS-HHHHHHCHHHSSSEEEEE
T ss_pred EEeccceEeccCccCChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecC----CCCcCCHHHHHHHhccCCCCEEEE
Confidence 9988631 111 1111110 1114899999999 99976542 347899999999977 899999
Q ss_pred cCCCchhchHHHHHHHHcCC
Q 021995 208 NARGAIMDTQAVVDACSSGH 227 (304)
Q Consensus 208 ~~rg~~vd~~aL~~aL~~g~ 227 (304)
.|.....-|-.-.++.+-+.
T Consensus 140 LSNPt~~aE~~peda~~~t~ 159 (255)
T PF03949_consen 140 LSNPTPKAECTPEDAYEWTD 159 (255)
T ss_dssp -SSSCGGSSS-HHHHHHTTT
T ss_pred CCCCCCcccCCHHHHHhhCC
Confidence 99988855555555555544
No 414
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.23 E-value=0.033 Score=48.97 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=33.7
Q ss_pred ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCC
Q 021995 114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM 151 (304)
Q Consensus 114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~ 151 (304)
++.|+++.|.|. |.||+.+++.|...|++|++.+|+..
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~ 40 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN 40 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 368899999996 77999999999999999999998753
No 415
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.23 E-value=0.021 Score=50.47 Aligned_cols=65 Identities=23% Similarity=0.235 Sum_probs=49.1
Q ss_pred EEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCC--hhHHHhcCcee-------cCCHHhhcCcCCEEEEcCCCC
Q 021995 120 VGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD--PQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPLT 184 (304)
Q Consensus 120 vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~--~~~~~~~g~~~-------~~~l~ell~~aDvVi~~~p~~ 184 (304)
|.|+|. |.+|+.+++.|...+++|.+.-|+..+ .+..+..|++. .+++.+.++.+|.|++++|..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 678985 999999999999899999999886522 22234455532 245667899999999999843
No 416
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.22 E-value=0.044 Score=51.86 Aligned_cols=88 Identities=23% Similarity=0.286 Sum_probs=52.7
Q ss_pred CCEEEEEe-eChhhHHHHHHhccCCCe---EEEEcCCCCChhHHHhcCce-ecCCHH-hhcCcCCEEEEcCCCChhhhcc
Q 021995 117 GKTVGTVG-CGRIGKLLLQRLKPFNCN---LLYHDRVKMDPQLEKETGAK-FEEDLD-TMLPKCDIVVVNTPLTEKTRGM 190 (304)
Q Consensus 117 g~~vgIIG-~G~IG~~lA~~l~~~G~~---V~~~dr~~~~~~~~~~~g~~-~~~~l~-ell~~aDvVi~~~p~~~~t~~~ 190 (304)
+++|+|+| .|.+|+.+++.|...|+. +.+..+.....+...-.+.. .+.+++ +.+.++|+|++|+|....
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s---- 76 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVS---- 76 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHH----
Confidence 46899999 599999999999886654 45554332221111111111 111222 234789999999985422
Q ss_pred ccHHHHhc-CCCCCEEEEcCC
Q 021995 191 FDKDRIAK-MKKGVLIVNNAR 210 (304)
Q Consensus 191 i~~~~l~~-mk~g~ilVn~~r 210 (304)
.+..+. ++.|+.+||.+.
T Consensus 77 --~~~~~~~~~~G~~VIDlS~ 95 (334)
T PRK14874 77 --KKYAPKAAAAGAVVIDNSS 95 (334)
T ss_pred --HHHHHHHHhCCCEEEECCc
Confidence 333332 367889998884
No 417
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=95.18 E-value=0.067 Score=50.23 Aligned_cols=89 Identities=20% Similarity=0.209 Sum_probs=61.2
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec-----CCH----Hhhc--CcCCEEEEcCCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDL----DTML--PKCDIVVVNTPL 183 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~-----~~l----~ell--~~aDvVi~~~p~ 183 (304)
.|++|.|.|.|.+|..+++.++..|.+ |++.+++..+.+.++++|+... .++ .++. ...|+++-+...
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~ 245 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAGGG 245 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECCCC
Confidence 578999999999999999999999995 7888876655556666665321 111 1223 247888776653
Q ss_pred ChhhhccccHHHHhcCCCCCEEEEcC
Q 021995 184 TEKTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 184 ~~~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
.+ . -.+.++.++++..+|+++
T Consensus 246 ~~----~-~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 246 QD----T-FEQALKVLKPGGTISNVN 266 (351)
T ss_pred HH----H-HHHHHHHhhcCCEEEEec
Confidence 21 1 146677788888888775
No 418
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.17 E-value=0.071 Score=51.24 Aligned_cols=37 Identities=22% Similarity=0.132 Sum_probs=33.4
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCC
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV 149 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~ 149 (304)
..|.+++|.|+|+|.+|..+++.|...|. ++..+|+.
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999999999999998 58888876
No 419
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.14 E-value=0.039 Score=48.27 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=33.8
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCC
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVK 150 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~ 150 (304)
..|..++|.|+|+|.+|.++++.|...|.. +..+|...
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 468999999999999999999999999986 88888653
No 420
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.11 E-value=0.082 Score=49.46 Aligned_cols=49 Identities=29% Similarity=0.347 Sum_probs=43.1
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE 164 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~ 164 (304)
.|.+|.|+|.|.||-.....++++|+. |++.|..+...+.++++|++.+
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~ 218 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVT 218 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEE
Confidence 589999999999999999999999985 8899988878888888887643
No 421
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.08 E-value=0.013 Score=46.86 Aligned_cols=79 Identities=20% Similarity=0.272 Sum_probs=59.0
Q ss_pred hhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----C----CHHhhcC--cCCEEEEcCCCChhhhccccHHH
Q 021995 127 RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----E----DLDTMLP--KCDIVVVNTPLTEKTRGMFDKDR 195 (304)
Q Consensus 127 ~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~----~l~ell~--~aDvVi~~~p~~~~t~~~i~~~~ 195 (304)
.+|...++.++.+|++|++.+++..+.+.++++|+..+ . .+.++.. ..|+++-|++..+ . -...
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~----~-~~~~ 75 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGD----T-LQEA 75 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHH----H-HHHH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHH----H-HHHH
Confidence 37888899999999999999998777788888885422 1 1234444 4999999987322 2 2577
Q ss_pred HhcCCCCCEEEEcCC
Q 021995 196 IAKMKKGVLIVNNAR 210 (304)
Q Consensus 196 l~~mk~g~ilVn~~r 210 (304)
++.++++..++.++-
T Consensus 76 ~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 76 IKLLRPGGRIVVVGV 90 (130)
T ss_dssp HHHEEEEEEEEEESS
T ss_pred HHHhccCCEEEEEEc
Confidence 888999999999973
No 422
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=95.04 E-value=0.092 Score=48.77 Aligned_cols=90 Identities=24% Similarity=0.320 Sum_probs=60.7
Q ss_pred CCCEEEEEeeChhhHHHHHHhcc-CCCeEEEEcCCCCChhHHHhcCceec------CC----HHhhcCcCCEEEEcCCCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFE------ED----LDTMLPKCDIVVVNTPLT 184 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~-~G~~V~~~dr~~~~~~~~~~~g~~~~------~~----l~ell~~aDvVi~~~p~~ 184 (304)
.|.+|.|.|.|.+|..+++.++. +|.+|++.+++....+.++++|+... .+ +.+.....|+++++...
T Consensus 162 ~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~~~~d~vi~~~~~- 240 (338)
T PRK09422 162 PGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKTGGAHAAVVTAVA- 240 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEEecccccccHHHHHHHhcCCCcEEEEeCCC-
Confidence 57899999999999999999997 59999999887766666666665221 11 11223345755555432
Q ss_pred hhhhccccHHHHhcCCCCCEEEEcCC
Q 021995 185 EKTRGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 185 ~~t~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
.. . -.+.++.++++..++.++.
T Consensus 241 ~~---~-~~~~~~~l~~~G~~v~~g~ 262 (338)
T PRK09422 241 KA---A-FNQAVDAVRAGGRVVAVGL 262 (338)
T ss_pred HH---H-HHHHHHhccCCCEEEEEee
Confidence 11 1 2566777888888887763
No 423
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=95.02 E-value=0.08 Score=48.84 Aligned_cols=88 Identities=20% Similarity=0.128 Sum_probs=60.4
Q ss_pred CCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHh----hc-CcCCEEEEcCCCC
Q 021995 116 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDT----ML-PKCDIVVVNTPLT 184 (304)
Q Consensus 116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~e----ll-~~aDvVi~~~p~~ 184 (304)
.|.+|.|.| .|.+|+.+++.++.+|++|++.+++..+.+..+++|+... .++.+ +. ...|+++-++..
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g~- 221 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVGG- 221 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCCH-
Confidence 578999999 6999999999999999999988876655566666665321 12211 11 236777766542
Q ss_pred hhhhccccHHHHhcCCCCCEEEEcC
Q 021995 185 EKTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 185 ~~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
+. ..+.++.++++..++.++
T Consensus 222 ~~-----~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 222 EF-----SSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred HH-----HHHHHHhhccCCEEEEEc
Confidence 11 156677788888888775
No 424
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=94.98 E-value=0.081 Score=48.58 Aligned_cols=87 Identities=16% Similarity=0.173 Sum_probs=55.9
Q ss_pred CCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec---CCH----Hhhc--CcCCEEEEcCCCChh
Q 021995 117 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---EDL----DTML--PKCDIVVVNTPLTEK 186 (304)
Q Consensus 117 g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~---~~l----~ell--~~aDvVi~~~p~~~~ 186 (304)
+.+|.|.|. |.+|..+++.++..|.+|++.+++....+.++++|+... .+. .... ...|+++-+... +
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~-~- 224 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLKSLGASEVLDREDLLDESKKPLLKARWAGAIDTVGG-D- 224 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEcchhHHHHHHHHhcCCCccEEEECCch-H-
Confidence 468999998 999999999999999999988887655555555664221 111 1111 235666554331 1
Q ss_pred hhccccHHHHhcCCCCCEEEEcC
Q 021995 187 TRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 187 t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
...+.++.++++..+|.++
T Consensus 225 ----~~~~~~~~l~~~g~~v~~g 243 (325)
T cd05280 225 ----VLANLLKQTKYGGVVASCG 243 (325)
T ss_pred ----HHHHHHHhhcCCCEEEEEe
Confidence 1245566667777777665
No 425
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.98 E-value=0.2 Score=41.01 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=28.6
Q ss_pred EEEEEeeChhhHHHHHHhccCCC-eEEEEcCCC
Q 021995 119 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK 150 (304)
Q Consensus 119 ~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~ 150 (304)
+|.|+|+|.+|..+++.|...|. ++..+|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 588998763
No 426
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=94.97 E-value=0.017 Score=49.90 Aligned_cols=67 Identities=19% Similarity=0.243 Sum_probs=45.2
Q ss_pred CEEEEEeeChhhHHHHHHh--ccCCCeEE-EEcCCCCChh-HHHhcCceecCCHHhhcC--cCCEEEEcCCCC
Q 021995 118 KTVGTVGCGRIGKLLLQRL--KPFNCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTMLP--KCDIVVVNTPLT 184 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l--~~~G~~V~-~~dr~~~~~~-~~~~~g~~~~~~l~ell~--~aDvVi~~~p~~ 184 (304)
-++.|||.|++|++++.+= +..|++++ +||..+.... ......+...+++++.++ +.|+.++|+|..
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~ 157 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAE 157 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHH
Confidence 3699999999999999643 46789854 8887653111 111122334567777777 577899999943
No 427
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=94.97 E-value=0.085 Score=48.05 Aligned_cols=89 Identities=16% Similarity=0.113 Sum_probs=62.2
Q ss_pred CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCcee-cCCHHhhc-CcCCEEEEcCCCChhhhcccc
Q 021995 116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-EEDLDTML-PKCDIVVVNTPLTEKTRGMFD 192 (304)
Q Consensus 116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~-~~~l~ell-~~aDvVi~~~p~~~~t~~~i~ 192 (304)
.|.++.|.|. |.+|+.+++.++.+|++|++.+++....+..+++|+.. ....+++. ...|+++-++... . .
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vl~~~g~~----~--~ 205 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEVVVGGSELSGAPVDLVVDSVGGP----Q--L 205 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEeccccccCCCceEEEECCCcH----H--H
Confidence 5899999998 99999999999999999998887665555666666421 11111111 2477777665421 1 2
Q ss_pred HHHHhcCCCCCEEEEcCC
Q 021995 193 KDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 193 ~~~l~~mk~g~ilVn~~r 210 (304)
...++.|+++..+|.++.
T Consensus 206 ~~~~~~l~~~G~~v~~g~ 223 (305)
T cd08270 206 ARALELLAPGGTVVSVGS 223 (305)
T ss_pred HHHHHHhcCCCEEEEEec
Confidence 567788888888888864
No 428
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=94.96 E-value=0.17 Score=49.89 Aligned_cols=107 Identities=13% Similarity=0.122 Sum_probs=72.6
Q ss_pred cCCCEEEEEee----ChhhHHHHHHhccCCC--eEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhh
Q 021995 115 LEGKTVGTVGC----GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR 188 (304)
Q Consensus 115 L~g~~vgIIG~----G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~ 188 (304)
+.-++|+|||. |++|..+.+.|+..|+ +|+.+++... .-.|...+.+++++-...|++++++|.. .+.
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~-----~i~G~~~~~sl~~lp~~~Dlavi~vp~~-~~~ 78 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAG-----EILGVKAYPSVLEIPDPVDLAVIVVPAK-YVP 78 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCC-----ccCCccccCCHHHCCCCCCEEEEecCHH-HHH
Confidence 56689999998 8899999999998887 6888887542 2246667778999988899999999943 223
Q ss_pred ccccHHHHhcCCCCCEEE-EcCCCc-----hhchHHHHHHHHcCCce
Q 021995 189 GMFDKDRIAKMKKGVLIV-NNARGA-----IMDTQAVVDACSSGHIA 229 (304)
Q Consensus 189 ~~i~~~~l~~mk~g~ilV-n~~rg~-----~vd~~aL~~aL~~g~i~ 229 (304)
.++ ++..+ .+-..++| .-+-++ ...+++|.+..+++.+.
T Consensus 79 ~~l-~e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~gir 123 (447)
T TIGR02717 79 QVV-EECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMR 123 (447)
T ss_pred HHH-HHHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCE
Confidence 333 23332 33334433 222222 23457788888887766
No 429
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=94.96 E-value=0.078 Score=49.76 Aligned_cols=92 Identities=22% Similarity=0.241 Sum_probs=56.8
Q ss_pred EEEEEee-ChhhHHHHHHhccCC--CeEEEEcCCCCChhHHHh--cC-----cee-c--CCHHhhcCcCCEEEEcCCCC-
Q 021995 119 TVGTVGC-GRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEKE--TG-----AKF-E--EDLDTMLPKCDIVVVNTPLT- 184 (304)
Q Consensus 119 ~vgIIG~-G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~~~~~--~g-----~~~-~--~~l~ell~~aDvVi~~~p~~- 184 (304)
+|+|||. |.+|..+|-.|...+ -++..+|... ....+.+ .+ +.. . +++.+.+++||+|+++....
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~ 79 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPR 79 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCC
Confidence 5899999 999999999886555 4799999865 2211111 11 121 1 13467899999999886432
Q ss_pred -h-h--------hhcccc--HHHHhcCCCCCEEEEcCCC
Q 021995 185 -E-K--------TRGMFD--KDRIAKMKKGVLIVNNARG 211 (304)
Q Consensus 185 -~-~--------t~~~i~--~~~l~~mk~g~ilVn~~rg 211 (304)
+ . +..++. .+.+....|++++|+++..
T Consensus 80 ~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP 118 (312)
T TIGR01772 80 KPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNP 118 (312)
T ss_pred CCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 2 1 111110 0123334689999999854
No 430
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.94 E-value=0.1 Score=48.99 Aligned_cols=94 Identities=27% Similarity=0.305 Sum_probs=58.5
Q ss_pred CEEEEEee-ChhhHHHHHHhccCC--CeEEEEcCCCCChhHHHh--cC-----cee--c-CCHHhhcCcCCEEEEcCCC-
Q 021995 118 KTVGTVGC-GRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEKE--TG-----AKF--E-EDLDTMLPKCDIVVVNTPL- 183 (304)
Q Consensus 118 ~~vgIIG~-G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~~~~~--~g-----~~~--~-~~l~ell~~aDvVi~~~p~- 183 (304)
++|+|||. |.+|..+|-.|...| -++..+|.+ .....+.+ .+ +.. . +++.+.+++||+|+++...
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~ 79 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP 79 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence 48999999 999999999887666 478999986 22211111 11 121 1 2346789999999988643
Q ss_pred -Ch-hhhc-cc--cHH-------HHhcCCCCCEEEEcCCCc
Q 021995 184 -TE-KTRG-MF--DKD-------RIAKMKKGVLIVNNARGA 212 (304)
Q Consensus 184 -~~-~t~~-~i--~~~-------~l~~mk~g~ilVn~~rg~ 212 (304)
.+ .++- ++ |.+ .+....|++++|+++..-
T Consensus 80 ~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 120 (310)
T cd01337 80 RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 22 1111 11 111 233346899999998653
No 431
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=94.92 E-value=0.08 Score=49.25 Aligned_cols=90 Identities=18% Similarity=0.233 Sum_probs=60.3
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec---C--CHHhhc---CcCCEEEEcCCCChh
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE---E--DLDTML---PKCDIVVVNTPLTEK 186 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~---~--~l~ell---~~aDvVi~~~p~~~~ 186 (304)
.|.+|.|.|.|.+|+.+++.++.+|. +|++.+++....+..++.|...+ . ++.++. ...|+++-+......
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~~~~ 244 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGAPAA 244 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCCHHH
Confidence 78999999999999999999999999 78888876544445555554211 1 121222 226787776542211
Q ss_pred hhccccHHHHhcCCCCCEEEEcCC
Q 021995 187 TRGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 187 t~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
..+.++.|+++..+|+++.
T Consensus 245 -----~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 245 -----LASALRVVRPGGTVVQVGM 263 (339)
T ss_pred -----HHHHHHHHhcCCEEEEEec
Confidence 2456777888888888763
No 432
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=94.92 E-value=0.088 Score=49.08 Aligned_cols=87 Identities=21% Similarity=0.174 Sum_probs=57.7
Q ss_pred CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecC-----CHH--hhc--CcCCEEEEcCCCCh
Q 021995 116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE-----DLD--TML--PKCDIVVVNTPLTE 185 (304)
Q Consensus 116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~-----~l~--ell--~~aDvVi~~~p~~~ 185 (304)
.|.+|.|.|. |.+|+.+++.++..|++|++.+.+. ..+.+++.|+.... ... ... ...|+++-+... +
T Consensus 177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~-~ 254 (350)
T cd08274 177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADVVGG-P 254 (350)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecCCH-H
Confidence 5789999998 9999999999999999988777544 44455555542111 111 111 347777766652 1
Q ss_pred hhhccccHHHHhcCCCCCEEEEcC
Q 021995 186 KTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 186 ~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
.....+..|+++..+|+++
T Consensus 255 -----~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 255 -----LFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred -----HHHHHHHHhccCCEEEEec
Confidence 1245667778888887765
No 433
>PLN00106 malate dehydrogenase
Probab=94.91 E-value=0.067 Score=50.42 Aligned_cols=96 Identities=23% Similarity=0.323 Sum_probs=59.8
Q ss_pred CCCEEEEEee-ChhhHHHHHHhccCC--CeEEEEcCCCCChhHHHh-------cCce---ecCCHHhhcCcCCEEEEcCC
Q 021995 116 EGKTVGTVGC-GRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEKE-------TGAK---FEEDLDTMLPKCDIVVVNTP 182 (304)
Q Consensus 116 ~g~~vgIIG~-G~IG~~lA~~l~~~G--~~V~~~dr~~~~~~~~~~-------~g~~---~~~~l~ell~~aDvVi~~~p 182 (304)
..++|+|+|. |.+|..+|..|...+ -++..+|... ....+.+ ..+. ..+++.+.+++||+|+++.-
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-TPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-CCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 4469999999 999999999887444 4799999865 2111111 0111 12345788999999998754
Q ss_pred C--Ch-hhhc-cc--c----HHH---HhcCCCCCEEEEcCCCc
Q 021995 183 L--TE-KTRG-MF--D----KDR---IAKMKKGVLIVNNARGA 212 (304)
Q Consensus 183 ~--~~-~t~~-~i--~----~~~---l~~mk~g~ilVn~~rg~ 212 (304)
. .+ .++. ++ | .+. +....+++++++++..-
T Consensus 96 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 96 VPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 2 21 1111 11 1 122 23335889999998655
No 434
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=94.90 E-value=0.087 Score=49.07 Aligned_cols=93 Identities=16% Similarity=0.166 Sum_probs=62.7
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec----CCH----Hhhc--CcCCEEEEcCCC
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE----EDL----DTML--PKCDIVVVNTPL 183 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~----~~l----~ell--~~aDvVi~~~p~ 183 (304)
..|++|.|.|.|.+|+.+++.++..|+ +|++.+++..+.....++|+... .++ .++. ...|+++-+...
T Consensus 166 ~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~dvvid~~~~ 245 (344)
T cd08284 166 RPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAEPINFEDAEPVERVREATEGRGADVVLEAVGG 245 (344)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence 357899999999999999999999997 78887665444444555663211 111 2233 347888777653
Q ss_pred ChhhhccccHHHHhcCCCCCEEEEcCCCc
Q 021995 184 TEKTRGMFDKDRIAKMKKGVLIVNNARGA 212 (304)
Q Consensus 184 ~~~t~~~i~~~~l~~mk~g~ilVn~~rg~ 212 (304)
.. .....+..|+++..+|.++...
T Consensus 246 ~~-----~~~~~~~~l~~~g~~v~~g~~~ 269 (344)
T cd08284 246 AA-----ALDLAFDLVRPGGVISSVGVHT 269 (344)
T ss_pred HH-----HHHHHHHhcccCCEEEEECcCC
Confidence 21 1246677888888999887543
No 435
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=94.90 E-value=0.16 Score=50.81 Aligned_cols=96 Identities=18% Similarity=0.195 Sum_probs=68.8
Q ss_pred ccCCCEEEEEee---ChhhHHHHHHhccCC-CeEEEEcCCCC--ChhH---HHhcC--ceecCCHHhhcCcCCEE--EE-
Q 021995 114 DLEGKTVGTVGC---GRIGKLLLQRLKPFN-CNLLYHDRVKM--DPQL---EKETG--AKFEEDLDTMLPKCDIV--VV- 179 (304)
Q Consensus 114 ~L~g~~vgIIG~---G~IG~~lA~~l~~~G-~~V~~~dr~~~--~~~~---~~~~g--~~~~~~l~ell~~aDvV--i~- 179 (304)
.+.|++|+++|- +++.++++..+..|| ++|.+..|... +.+. +++.| +....++++.++++|+. +.
T Consensus 171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw~~ 250 (525)
T PRK13376 171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIWYF 250 (525)
T ss_pred CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceEEE
Confidence 588999999997 689999999999998 99999887543 2221 22334 34568999999999952 22
Q ss_pred ------cCCCC-----hh--hhccccHHHHhcCCCCCEEEEcC
Q 021995 180 ------NTPLT-----EK--TRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 180 ------~~p~~-----~~--t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
..+.. .. -...++++.++.+|++++|..+.
T Consensus 251 ~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL 293 (525)
T PRK13376 251 TRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL 293 (525)
T ss_pred eccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence 12111 01 12357889999999999999876
No 436
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=94.89 E-value=0.17 Score=47.33 Aligned_cols=64 Identities=23% Similarity=0.353 Sum_probs=43.6
Q ss_pred CEEEEEee-ChhhHHHHHHhccCCC--eEEEEcCCC--CChh-----HHH---hcC----ceecCCHHhhcCcCCEEEEc
Q 021995 118 KTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVK--MDPQ-----LEK---ETG----AKFEEDLDTMLPKCDIVVVN 180 (304)
Q Consensus 118 ~~vgIIG~-G~IG~~lA~~l~~~G~--~V~~~dr~~--~~~~-----~~~---~~g----~~~~~~l~ell~~aDvVi~~ 180 (304)
++|+|+|. |.+|..++..|...|. +|+.+|+.. ...+ ... ..+ +....+. +.+++||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 48999998 9999999999987775 499999843 1111 000 111 1122344 459999999999
Q ss_pred CC
Q 021995 181 TP 182 (304)
Q Consensus 181 ~p 182 (304)
..
T Consensus 80 ag 81 (309)
T cd05294 80 AG 81 (309)
T ss_pred cC
Confidence 75
No 437
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.87 E-value=0.065 Score=55.26 Aligned_cols=69 Identities=23% Similarity=0.264 Sum_probs=51.2
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCC---------------------hhHHHhcCceec--------C
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE--------E 165 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~---------------------~~~~~~~g~~~~--------~ 165 (304)
-.|++|.|||.|..|-..|..|...|++|++|++.... .+..++.|++.. .
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i 404 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDI 404 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcC
Confidence 36899999999999999999999999999999875421 122344565421 1
Q ss_pred CHHhhcCcCCEEEEcCCC
Q 021995 166 DLDTMLPKCDIVVVNTPL 183 (304)
Q Consensus 166 ~l~ell~~aDvVi~~~p~ 183 (304)
+++++..+.|.|++++..
T Consensus 405 ~~~~~~~~~DavilAtGa 422 (654)
T PRK12769 405 SLESLLEDYDAVFVGVGT 422 (654)
T ss_pred CHHHHHhcCCEEEEeCCC
Confidence 455666789999997654
No 438
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.87 E-value=0.22 Score=48.35 Aligned_cols=105 Identities=15% Similarity=0.159 Sum_probs=65.7
Q ss_pred CEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCCHHhhc--CcCCEEEEc--CCC-Chhh---hc
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML--PKCDIVVVN--TPL-TEKT---RG 189 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell--~~aDvVi~~--~p~-~~~t---~~ 189 (304)
++|.|+|+|..|.++|+.|+ .|++|+++|..+.... ..+.|+... + ++.+ .++|+|+.. +|. ++.. +.
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~ 76 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKN 76 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHH
Confidence 36899999999999999999 9999999996432221 223455443 2 2233 468988665 232 2221 11
Q ss_pred cccH-HHHhcCCCCCEEEEcCCCchhchHHHHHHHHcC
Q 021995 190 MFDK-DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 226 (304)
Q Consensus 190 ~i~~-~~l~~mk~g~ilVn~~rg~~vd~~aL~~aL~~g 226 (304)
++.+ +++..+.+..+-|--+.|+.-...-+...|+..
T Consensus 77 i~~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~~ 114 (401)
T PRK03815 77 LISEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLEDF 114 (401)
T ss_pred HhhHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHHC
Confidence 2222 233332233566666779888888888888763
No 439
>PLN02602 lactate dehydrogenase
Probab=94.85 E-value=0.086 Score=50.26 Aligned_cols=92 Identities=16% Similarity=0.245 Sum_probs=56.7
Q ss_pred CEEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChh-HHHhc-------C-cee--cCCHHhhcCcCCEEEEcCCCC
Q 021995 118 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET-------G-AKF--EEDLDTMLPKCDIVVVNTPLT 184 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~-~~~~~-------g-~~~--~~~l~ell~~aDvVi~~~p~~ 184 (304)
++|+|||.|.+|..+|..+...|. ++..+|.+....+ .+.++ + ... ..+.+ .+++||+|+++.-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~-~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYA-VTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHH-HhCCCCEEEECCCCC
Confidence 699999999999999998875554 6999998653221 11111 1 111 12444 489999999985432
Q ss_pred --h-hhh-ccc--cH-------HHHhcCCCCCEEEEcCC
Q 021995 185 --E-KTR-GMF--DK-------DRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 185 --~-~t~-~~i--~~-------~~l~~mk~g~ilVn~~r 210 (304)
+ .++ .++ |. +.+....+++++|+++.
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 1 122 111 11 12333467899999984
No 440
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=94.84 E-value=0.061 Score=50.69 Aligned_cols=87 Identities=22% Similarity=0.246 Sum_probs=61.8
Q ss_pred CCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceecCC-----HH----hhcC--cCCEEEEcCCCC
Q 021995 117 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEED-----LD----TMLP--KCDIVVVNTPLT 184 (304)
Q Consensus 117 g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~-----l~----ell~--~aDvVi~~~p~~ 184 (304)
|++|.|.| .|.+|....+.++++|..+++...+..+.+.++++|+...-+ +. ++.. ..|+|+-++-..
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG~~ 222 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVGGD 222 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCCHH
Confidence 89999999 899999999999999966555554454455777888643222 33 3332 589998877522
Q ss_pred hhhhccccHHHHhcCCCCCEEEEcC
Q 021995 185 EKTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 185 ~~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
.+ .+.++.|+++..++.++
T Consensus 223 -----~~-~~~l~~l~~~G~lv~ig 241 (326)
T COG0604 223 -----TF-AASLAALAPGGRLVSIG 241 (326)
T ss_pred -----HH-HHHHHHhccCCEEEEEe
Confidence 12 45778888888888876
No 441
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.84 E-value=0.082 Score=51.62 Aligned_cols=112 Identities=15% Similarity=0.157 Sum_probs=69.0
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChh-HHHhcCceecC--CHHhhcCcCCEEEEcCCCChhhhc-
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAKFEE--DLDTMLPKCDIVVVNTPLTEKTRG- 189 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~-~~~~~g~~~~~--~l~ell~~aDvVi~~~p~~~~t~~- 189 (304)
++.+++|.|+|+|..|.+.++.|+..|++|.++|....... ...+.|+.... ...+.++..|+|+.. |.-+....
T Consensus 3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~s-pgi~~~~~~ 81 (438)
T PRK03806 3 DYQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVAS-PGIALAHPS 81 (438)
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEEC-CCCCCCCHH
Confidence 35688999999999999999999999999999997543221 11122543321 122456778977654 32221111
Q ss_pred ----------cccH-HHHhcC-CCCCEEEEcCCCchhchHHHHHHHHcC
Q 021995 190 ----------MFDK-DRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSG 226 (304)
Q Consensus 190 ----------~i~~-~~l~~m-k~g~ilVn~~rg~~vd~~aL~~aL~~g 226 (304)
++.+ +++..+ +...+-|--+.|+.-...-|.+.|+..
T Consensus 82 ~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~ 130 (438)
T PRK03806 82 LSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAA 130 (438)
T ss_pred HHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 2222 344333 333455666678888888888888753
No 442
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.78 E-value=0.24 Score=48.49 Aligned_cols=111 Identities=22% Similarity=0.291 Sum_probs=68.9
Q ss_pred cCC-CEEEEEeeChhhHHHHHHhccC--CCeEEEEcCCCCCh--hHHHhcCceec---CCHHhhcCcCCEEEEcC--CC-
Q 021995 115 LEG-KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDP--QLEKETGAKFE---EDLDTMLPKCDIVVVNT--PL- 183 (304)
Q Consensus 115 L~g-~~vgIIG~G~IG~~lA~~l~~~--G~~V~~~dr~~~~~--~~~~~~g~~~~---~~l~ell~~aDvVi~~~--p~- 183 (304)
+.+ ++|.|+|+|..|.+.++.|... |++|.++|...... +..+. |+... .+. +.+.++|+|+..- |.
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~-~~~~~~d~vV~SpgI~~~ 81 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNL-EWLLEADLVVTNPGIALA 81 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCCh-HHhccCCEEEECCCCCCC
Confidence 456 7899999999999999999876 58999999754322 11222 55432 132 4457899887653 32
Q ss_pred Chhhh-------ccccH-HHHhc-CCCCCEEEEcCCCchhchHHHHHHHHcCC
Q 021995 184 TEKTR-------GMFDK-DRIAK-MKKGVLIVNNARGAIMDTQAVVDACSSGH 227 (304)
Q Consensus 184 ~~~t~-------~~i~~-~~l~~-mk~g~ilVn~~rg~~vd~~aL~~aL~~g~ 227 (304)
+|... .++.+ +++.. ++...+-|--+.|+.-...-|...|+...
T Consensus 82 ~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g 134 (438)
T PRK04663 82 TPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAG 134 (438)
T ss_pred CHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCC
Confidence 22211 12222 33333 34345556566788888887888887543
No 443
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=94.78 E-value=0.084 Score=48.73 Aligned_cols=67 Identities=24% Similarity=0.299 Sum_probs=46.3
Q ss_pred CCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh---c-----Cce-------ecCCHHhhcCcCCEEEE
Q 021995 116 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE---T-----GAK-------FEEDLDTMLPKCDIVVV 179 (304)
Q Consensus 116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~---~-----g~~-------~~~~l~ell~~aDvVi~ 179 (304)
.|++|.|.| .|-||+.+++.|...|++|.+.+|+......... . .++ ....++++++++|+|+-
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 368999999 6999999999999999999988876533211110 0 111 11346677888998876
Q ss_pred cCC
Q 021995 180 NTP 182 (304)
Q Consensus 180 ~~p 182 (304)
+..
T Consensus 83 ~A~ 85 (322)
T PLN02662 83 TAS 85 (322)
T ss_pred eCC
Confidence 653
No 444
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.72 E-value=0.059 Score=47.13 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=33.1
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCC
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV 149 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~ 149 (304)
..|..++|.|+|+|.+|.++++.|...|.. ++.+|..
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 468899999999999999999999988986 8888865
No 445
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=94.71 E-value=0.13 Score=48.24 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=51.3
Q ss_pred EEEEEee-ChhhHHHHHHhccC-CCeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHHH
Q 021995 119 TVGTVGC-GRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI 196 (304)
Q Consensus 119 ~vgIIG~-G~IG~~lA~~l~~~-G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~l 196 (304)
+|+|+|. |-.|.++.++|... .+++........ ... .+.+++++++|++++++|.... .+..
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~---------~~~-~~~~~~~~~~D~vFlalp~~~s------~~~~ 66 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR---------KDA-AERAKLLNAADVAILCLPDDAA------REAV 66 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc---------cCc-CCHhHhhcCCCEEEECCCHHHH------HHHH
Confidence 7999995 99999999999865 556665543221 111 2456777899999999995422 2333
Q ss_pred hcC-CCCCEEEEcC
Q 021995 197 AKM-KKGVLIVNNA 209 (304)
Q Consensus 197 ~~m-k~g~ilVn~~ 209 (304)
+.+ ..|+.+||.|
T Consensus 67 ~~~~~~g~~VIDlS 80 (310)
T TIGR01851 67 SLVDNPNTCIIDAS 80 (310)
T ss_pred HHHHhCCCEEEECC
Confidence 322 5688999998
No 446
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=94.70 E-value=0.056 Score=54.93 Aligned_cols=69 Identities=19% Similarity=0.351 Sum_probs=49.1
Q ss_pred ccCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhH-HHhcCc-eecCC---HHhhcCcCCEEEEcCC
Q 021995 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGA-KFEED---LDTMLPKCDIVVVNTP 182 (304)
Q Consensus 114 ~L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~-~~~~g~-~~~~~---l~ell~~aDvVi~~~p 182 (304)
....++|||||-|..|+.+++.++.+|++|+++|+++..+.. ..+..+ ..+.+ +.++.+++|+|.....
T Consensus 19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e 92 (577)
T PLN02948 19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE 92 (577)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence 478899999999999999999999999999999987642221 111111 11233 4556788999876544
No 447
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=94.69 E-value=0.045 Score=51.84 Aligned_cols=62 Identities=21% Similarity=0.402 Sum_probs=44.0
Q ss_pred EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhH-HHhcCc-eecCC---HHhhcCcCCEEEEc
Q 021995 119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGA-KFEED---LDTMLPKCDIVVVN 180 (304)
Q Consensus 119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~-~~~~g~-~~~~~---l~ell~~aDvVi~~ 180 (304)
+|||||.|..|+.+++.++.+|++|+++|.++..+.. ..+..+ ..+.+ +.++++.||+|...
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e 67 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFE 67 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeC
Confidence 5899999999999999999999999999987643321 111111 11233 66788889987543
No 448
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=94.69 E-value=0.16 Score=48.10 Aligned_cols=91 Identities=20% Similarity=0.246 Sum_probs=62.9
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec-----CCHHh-h---c-CcCCEEEEcCCCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLDT-M---L-PKCDIVVVNTPLT 184 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~-----~~l~e-l---l-~~aDvVi~~~p~~ 184 (304)
.|++|.|.|.|.+|..+++.++..|.+ |++.+++..+.+.+++.|+... .++.+ + . ...|+++-++...
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g~~ 265 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDTTGVP 265 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECCCCc
Confidence 578999999999999999999999995 8888876655555555554221 12211 1 1 3578888776532
Q ss_pred hhhhccccHHHHhcCCCCCEEEEcCCC
Q 021995 185 EKTRGMFDKDRIAKMKKGVLIVNNARG 211 (304)
Q Consensus 185 ~~t~~~i~~~~l~~mk~g~ilVn~~rg 211 (304)
+. -...++.++++..+|.++..
T Consensus 266 ~~-----~~~~~~~l~~~G~~v~~g~~ 287 (365)
T cd08278 266 AV-----IEQAVDALAPRGTLALVGAP 287 (365)
T ss_pred HH-----HHHHHHHhccCCEEEEeCcC
Confidence 21 14667778888888888753
No 449
>PRK05442 malate dehydrogenase; Provisional
Probab=94.68 E-value=0.26 Score=46.57 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=43.1
Q ss_pred CEEEEEee-ChhhHHHHHHhccCCC-------eEEEEcCCCCC---hhHHHhc---------CceecCCHHhhcCcCCEE
Q 021995 118 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD---PQLEKET---------GAKFEEDLDTMLPKCDIV 177 (304)
Q Consensus 118 ~~vgIIG~-G~IG~~lA~~l~~~G~-------~V~~~dr~~~~---~~~~~~~---------g~~~~~~l~ell~~aDvV 177 (304)
.+|+|||. |.+|..+|..|...|. ++..+|..... ...+.++ ......+..+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999988765433 78999974321 1111110 122223556789999999
Q ss_pred EEcCC
Q 021995 178 VVNTP 182 (304)
Q Consensus 178 i~~~p 182 (304)
+++.-
T Consensus 85 VitaG 89 (326)
T PRK05442 85 LLVGA 89 (326)
T ss_pred EEeCC
Confidence 98764
No 450
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=94.68 E-value=0.15 Score=49.26 Aligned_cols=95 Identities=16% Similarity=0.158 Sum_probs=63.9
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCCeEE-EEcCCCCChhHHHhcCceec-----CCHH----hhc--CcCCEEEEcCC
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFE-----EDLD----TML--PKCDIVVVNTP 182 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~-----~~l~----ell--~~aDvVi~~~p 182 (304)
-.|++|.|.|.|.+|..+++.++.+|.+++ +.+++....+.++++|+..+ .++. ++. ...|+++-++.
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G 263 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVDCVG 263 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEECCC
Confidence 358899999999999999999999999854 45665556667777776422 1222 222 24788888775
Q ss_pred CChh----------hhccccHHHHhcCCCCCEEEEcCC
Q 021995 183 LTEK----------TRGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 183 ~~~~----------t~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
.... ....+ .+.++.++++..++.+|-
T Consensus 264 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 264 FEARGHGHDGKKEAPATVL-NSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CccccccccccccchHHHH-HHHHHHhhCCCEEEEeee
Confidence 3210 00112 456788888888888874
No 451
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=94.67 E-value=0.11 Score=48.50 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=60.1
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCC-CeEEEEcCCCCChhHHHhcCceec-----CCH----Hhhc--CcCCEEEEcCCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFE-----EDL----DTML--PKCDIVVVNTPL 183 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~~~~~~g~~~~-----~~l----~ell--~~aDvVi~~~p~ 183 (304)
.|.+|.|.|.|.+|+.+++.++.+| .+|++++++..+....+++|+... .++ .++. ...|+++-++..
T Consensus 166 ~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~ 245 (345)
T cd08286 166 PGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVIEAVGI 245 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCEEEECCCC
Confidence 5789999999999999999999999 788888775544445555554211 111 1222 247888877642
Q ss_pred ChhhhccccHHHHhcCCCCCEEEEcC
Q 021995 184 TEKTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 184 ~~~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
.+. -...++.++++..+|+++
T Consensus 246 ~~~-----~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 246 PAT-----FELCQELVAPGGHIANVG 266 (345)
T ss_pred HHH-----HHHHHHhccCCcEEEEec
Confidence 111 245557788888888876
No 452
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.66 E-value=0.17 Score=47.68 Aligned_cols=65 Identities=18% Similarity=0.151 Sum_probs=43.1
Q ss_pred CEEEEEee-ChhhHHHHHHhccCCC-------eEEEEcCCC--CChhH-----HHhc-----CceecCCHHhhcCcCCEE
Q 021995 118 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVK--MDPQL-----EKET-----GAKFEEDLDTMLPKCDIV 177 (304)
Q Consensus 118 ~~vgIIG~-G~IG~~lA~~l~~~G~-------~V~~~dr~~--~~~~~-----~~~~-----g~~~~~~l~ell~~aDvV 177 (304)
.+|+|+|. |.+|+.++..|...|. ++..+|++. ...+. .... +.....+..+.+++||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 37999999 9999999998875442 588999864 21110 0000 111114566889999999
Q ss_pred EEcCC
Q 021995 178 VVNTP 182 (304)
Q Consensus 178 i~~~p 182 (304)
+++.-
T Consensus 81 VitAG 85 (323)
T cd00704 81 ILVGA 85 (323)
T ss_pred EEeCC
Confidence 88753
No 453
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=94.65 E-value=0.1 Score=48.99 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=51.1
Q ss_pred CEEEEEe-eChhhHHHHHHhccCC-CeEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccHHH
Q 021995 118 KTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR 195 (304)
Q Consensus 118 ~~vgIIG-~G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~~~ 195 (304)
.+|+|+| .|-.|+++.+.|.... .++.....+..+ . . .+.++.++++|++++++|.... .+.
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-~------~---~~~~~~~~~~DvvFlalp~~~s------~~~ 66 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-D------A---AARRELLNAADVAILCLPDDAA------REA 66 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-c------c---cCchhhhcCCCEEEECCCHHHH------HHH
Confidence 4899999 6999999999997653 455544432211 0 1 2334566789999999995422 333
Q ss_pred HhcC-CCCCEEEEcC
Q 021995 196 IAKM-KKGVLIVNNA 209 (304)
Q Consensus 196 l~~m-k~g~ilVn~~ 209 (304)
.+.+ +.|+.+||.|
T Consensus 67 ~~~~~~~g~~VIDlS 81 (313)
T PRK11863 67 VALIDNPATRVIDAS 81 (313)
T ss_pred HHHHHhCCCEEEECC
Confidence 3333 5688999998
No 454
>PRK08324 short chain dehydrogenase; Validated
Probab=94.64 E-value=0.054 Score=56.12 Aligned_cols=40 Identities=28% Similarity=0.302 Sum_probs=35.2
Q ss_pred cccCCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCC
Q 021995 113 YDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMD 152 (304)
Q Consensus 113 ~~L~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~ 152 (304)
..+.|+++.|.| .|.||+.+++.|...|++|++.+++...
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~ 458 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEA 458 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHH
Confidence 357899999999 5999999999999999999999987643
No 455
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.60 E-value=0.051 Score=54.92 Aligned_cols=69 Identities=12% Similarity=0.161 Sum_probs=48.3
Q ss_pred cCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHh---------cC------ce-------ecCCHHhhc
Q 021995 115 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE---------TG------AK-------FEEDLDTML 171 (304)
Q Consensus 115 L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~---------~g------~~-------~~~~l~ell 171 (304)
-.|++|.|.|. |.||+.+++.|...|++|.+++|+......... .| +. ..+++++.+
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 46889999995 999999999999999999999987543321110 01 11 112344567
Q ss_pred CcCCEEEEcCCC
Q 021995 172 PKCDIVVVNTPL 183 (304)
Q Consensus 172 ~~aDvVi~~~p~ 183 (304)
.++|+|+.+...
T Consensus 158 ggiDiVVn~AG~ 169 (576)
T PLN03209 158 GNASVVICCIGA 169 (576)
T ss_pred cCCCEEEEcccc
Confidence 889999888643
No 456
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=94.58 E-value=0.095 Score=47.38 Aligned_cols=90 Identities=18% Similarity=0.226 Sum_probs=59.7
Q ss_pred CCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec---C--C----HHhhc--CcCCEEEEcCCC
Q 021995 116 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---E--D----LDTML--PKCDIVVVNTPL 183 (304)
Q Consensus 116 ~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~---~--~----l~ell--~~aDvVi~~~p~ 183 (304)
.|++|.|.| .|.+|+.+++.++.+|.+|++.+++....+.+++.|+... . + +.++. ...|+++-++..
T Consensus 136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~ 215 (320)
T cd05286 136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYDGVGK 215 (320)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEECCCc
Confidence 578999999 6999999999999999999988876544445555554211 0 1 11222 236777766542
Q ss_pred ChhhhccccHHHHhcCCCCCEEEEcCCC
Q 021995 184 TEKTRGMFDKDRIAKMKKGVLIVNNARG 211 (304)
Q Consensus 184 ~~~t~~~i~~~~l~~mk~g~ilVn~~rg 211 (304)
. .....++.++++..++.++..
T Consensus 216 -~-----~~~~~~~~l~~~g~~v~~g~~ 237 (320)
T cd05286 216 -D-----TFEGSLDSLRPRGTLVSFGNA 237 (320)
T ss_pred -H-----hHHHHHHhhccCcEEEEEecC
Confidence 1 124566777888888877654
No 457
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=94.55 E-value=0.39 Score=45.52 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=66.5
Q ss_pred HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCccccccccccccc-CCCEEEEEeeC-------hh
Q 021995 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDL-EGKTVGTVGCG-------RI 128 (304)
Q Consensus 57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L-~g~~vgIIG~G-------~I 128 (304)
.++..+++|.|.... ..++ .+|+=++.+.+++ | .+ .|++|+|+|.| ++
T Consensus 132 ~a~~s~vPVINa~~~-~HPt--QaLaDl~Ti~e~~--------------------g-~~~~g~ki~i~~~gd~~~~~~~v 187 (335)
T PRK04523 132 FAKYSTVPVINMETI-THPC--QELAHALALQEHF--------------------G-TTLRGKKYVLTWTYHPKPLNTAV 187 (335)
T ss_pred HHHhCCCCEEECCCC-CChH--HHHHHHHHHHHHh--------------------C-CccCCCEEEEEEeccCcccccHH
Confidence 455678999998553 2221 2344445554421 1 36 78999887644 78
Q ss_pred hHHHHHHhccCCCeEEEEcC-CCC--ChhH-------HHhcC--ceecCCHHhhcCcCCEEEEcC
Q 021995 129 GKLLLQRLKPFNCNLLYHDR-VKM--DPQL-------EKETG--AKFEEDLDTMLPKCDIVVVNT 181 (304)
Q Consensus 129 G~~lA~~l~~~G~~V~~~dr-~~~--~~~~-------~~~~g--~~~~~~l~ell~~aDvVi~~~ 181 (304)
.++++..+..+|++|.+..| ... +.+. ++..| +....++++.++++|+|..-.
T Consensus 188 ~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~ 252 (335)
T PRK04523 188 ANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGADVVYAKS 252 (335)
T ss_pred HHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEece
Confidence 88999989999999999988 431 2211 12334 345679999999999998754
No 458
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=94.48 E-value=0.11 Score=46.58 Aligned_cols=88 Identities=23% Similarity=0.383 Sum_probs=61.2
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhc----Cce--e-cCCHHhhcC---cCCEEEE-----
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----GAK--F-EEDLDTMLP---KCDIVVV----- 179 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~----g~~--~-~~~l~ell~---~aDvVi~----- 179 (304)
+.|++|.=|||| |..++.-+...|.+|++.|-+....+.++.. |+. + ..+.+++.+ +.|+|++
T Consensus 58 l~g~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 58 LPGLRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCCeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 789999999998 4478888888899999999987766666532 332 2 234556555 7999876
Q ss_pred cCCCChhhhccccHHHHhcCCCCCEEEEc
Q 021995 180 NTPLTEKTRGMFDKDRIAKMKKGVLIVNN 208 (304)
Q Consensus 180 ~~p~~~~t~~~i~~~~l~~mk~g~ilVn~ 208 (304)
|+|..+ .+-....+++|||++++-.
T Consensus 136 Hv~dp~----~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 136 HVPDPE----SFLRACAKLVKPGGILFLS 160 (243)
T ss_pred ccCCHH----HHHHHHHHHcCCCcEEEEe
Confidence 455321 1335577888999877643
No 459
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.46 E-value=0.07 Score=51.24 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=33.3
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCC
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV 149 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~ 149 (304)
..|.+++|.|||+|.+|..+++.|...|. ++.++|..
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46899999999999999999999999997 68888875
No 460
>PRK07806 short chain dehydrogenase; Provisional
Probab=94.43 E-value=0.14 Score=45.29 Aligned_cols=37 Identities=30% Similarity=0.297 Sum_probs=32.6
Q ss_pred ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995 114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK 150 (304)
Q Consensus 114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~ 150 (304)
.+.|+++.|.|. |.||+.+++.|...|++|++.+|+.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 367899999996 8999999999999999999888754
No 461
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=94.43 E-value=0.18 Score=47.48 Aligned_cols=64 Identities=20% Similarity=0.175 Sum_probs=42.1
Q ss_pred EEEEEee-ChhhHHHHHHhccCCC-------eEEEEcCCCCC--hh-HHHhc---------CceecCCHHhhcCcCCEEE
Q 021995 119 TVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD--PQ-LEKET---------GAKFEEDLDTMLPKCDIVV 178 (304)
Q Consensus 119 ~vgIIG~-G~IG~~lA~~l~~~G~-------~V~~~dr~~~~--~~-~~~~~---------g~~~~~~l~ell~~aDvVi 178 (304)
+|+|||. |.+|..++..|...|. ++..+|+.+.. .+ ...++ ......+..+.+++||+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 5899999 9999999998876443 58899985421 11 11000 1111124467899999999
Q ss_pred EcCC
Q 021995 179 VNTP 182 (304)
Q Consensus 179 ~~~p 182 (304)
++.-
T Consensus 81 itAG 84 (324)
T TIGR01758 81 LVGA 84 (324)
T ss_pred EcCC
Confidence 8754
No 462
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=94.42 E-value=0.14 Score=49.08 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=38.8
Q ss_pred cCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCc
Q 021995 115 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA 161 (304)
Q Consensus 115 L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~ 161 (304)
-.|.+|.|.|. |.+|..+++.++.+|+++++.+++....+.++++|+
T Consensus 192 ~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~~G~ 239 (393)
T cd08246 192 KPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGA 239 (393)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCC
Confidence 35789999997 999999999999999998888876655566666664
No 463
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=94.42 E-value=0.16 Score=47.05 Aligned_cols=88 Identities=19% Similarity=0.175 Sum_probs=59.3
Q ss_pred CCEEEEEe-eChhhHHHHHHhccCC-CeEEEEcCCCCChhHHHhcCceec----CCHHh----hc-CcCCEEEEcCCCCh
Q 021995 117 GKTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFE----EDLDT----ML-PKCDIVVVNTPLTE 185 (304)
Q Consensus 117 g~~vgIIG-~G~IG~~lA~~l~~~G-~~V~~~dr~~~~~~~~~~~g~~~~----~~l~e----ll-~~aDvVi~~~p~~~ 185 (304)
|.+|.|+| .|.+|+.+++.++..| .+|++.+.+....+.++++|+... .+..+ .- ...|+++-+++...
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~d~vl~~~~~~~ 229 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVKELGADHVINHHQDLAEQLEALGIEPVDYIFCLTDTDQ 229 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHhcCCcEEEeCCccHHHHHHhhCCCCCCEEEEccCcHH
Confidence 78999999 5999999999999999 999998876655555665654211 11211 11 24677776654211
Q ss_pred hhhccccHHHHhcCCCCCEEEEcC
Q 021995 186 KTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 186 ~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
.....+..++++..+|+++
T Consensus 230 -----~~~~~~~~l~~~g~~v~~g 248 (336)
T cd08252 230 -----HWDAMAELIAPQGHICLIV 248 (336)
T ss_pred -----HHHHHHHHhcCCCEEEEec
Confidence 1245667778888888775
No 464
>PRK13529 malate dehydrogenase; Provisional
Probab=94.39 E-value=1.5 Score=44.25 Aligned_cols=146 Identities=11% Similarity=0.105 Sum_probs=100.0
Q ss_pred HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHh
Q 021995 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRL 136 (304)
Q Consensus 57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l 136 (304)
.--+..|.+.|..= .-+|--+++.+|+.+|- .+..|...+|.|.|.|..|-.+|+.+
T Consensus 258 ~ryr~~i~~FnDDi---QGTaaV~LAgll~A~r~--------------------~g~~l~d~riv~~GAGsAgiGia~ll 314 (563)
T PRK13529 258 ERYRDEICTFNDDI---QGTGAVTLAGLLAALKI--------------------TGEPLSDQRIVFLGAGSAGCGIADQI 314 (563)
T ss_pred HHhccCCCeecccc---chHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECCCHHHHHHHHHH
Confidence 33445788887653 34566678888988882 24568999999999999999999988
Q ss_pred cc----CCC-------eEEEEcCCCC---C---h-----hHHHhcCc-------eecCCHHhhcCcC--CEEEEcCCCCh
Q 021995 137 KP----FNC-------NLLYHDRVKM---D---P-----QLEKETGA-------KFEEDLDTMLPKC--DIVVVNTPLTE 185 (304)
Q Consensus 137 ~~----~G~-------~V~~~dr~~~---~---~-----~~~~~~g~-------~~~~~l~ell~~a--DvVi~~~p~~~ 185 (304)
.. .|. +++.+|+... . . ..++...- ....+|.|+++.+ |+++=+..
T Consensus 315 ~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~--- 391 (563)
T PRK13529 315 VAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSG--- 391 (563)
T ss_pred HHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecC---
Confidence 75 577 7889987631 1 0 11111100 0114789999988 98875432
Q ss_pred hhhccccHHHHhcCCC---CCEEEEcCCCchhchHHHHHHHH--cCCce
Q 021995 186 KTRGMFDKDRIAKMKK---GVLIVNNARGAIMDTQAVVDACS--SGHIA 229 (304)
Q Consensus 186 ~t~~~i~~~~l~~mk~---g~ilVn~~rg~~vd~~aL~~aL~--~g~i~ 229 (304)
.-+.+.++.++.|.+ ..++.-.|+....-|-.-.+|.+ +|+..
T Consensus 392 -~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai 439 (563)
T PRK13529 392 -QPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRAL 439 (563)
T ss_pred -CCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEE
Confidence 236889999999976 89999999988755544444444 45433
No 465
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=94.38 E-value=0.058 Score=49.68 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=45.6
Q ss_pred CEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCC
Q 021995 118 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTP 182 (304)
Q Consensus 118 ~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~-------~~~l~ell~~aDvVi~~~p 182 (304)
++|.|.| .|.+|+.+++.|...|++|++.+|++.........+++. .+++.++++.+|+|+.+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 4788998 599999999999999999999998654322211122221 1245677888999887654
No 466
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=94.37 E-value=0.16 Score=47.93 Aligned_cols=90 Identities=19% Similarity=0.148 Sum_probs=66.2
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceecCCH----------HhhcC-cCCEEEEcCCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDL----------DTMLP-KCDIVVVNTPL 183 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~~~l----------~ell~-~aDvVi~~~p~ 183 (304)
.|.++.|+|+|.+|-+..+.++..|+. +++.|.++.+.+.++++|+...-+. .++-. .+|+.+-+.-.
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G~ 264 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVGN 264 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEccCC
Confidence 589999999999999999999998985 8899999988999999987432111 23444 68888877764
Q ss_pred ChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995 184 TEKTRGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 184 ~~~t~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
.+. -++.|....++...|-++=
T Consensus 265 ~~~-----~~~al~~~~~~G~~v~iGv 286 (366)
T COG1062 265 VEV-----MRQALEATHRGGTSVIIGV 286 (366)
T ss_pred HHH-----HHHHHHHHhcCCeEEEEec
Confidence 432 1556666666666555553
No 467
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.36 E-value=0.1 Score=53.62 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=51.9
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCC---------------------hhHHHhcCceec--------C
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE--------E 165 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~---------------------~~~~~~~g~~~~--------~ 165 (304)
..|++|.|||.|..|...|..|+..|++|++|++.+.. .+.....|++.. .
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~ 387 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI 387 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence 36999999999999999999999999999999876521 122344454321 2
Q ss_pred CHHhhcCcCCEEEEcCCCC
Q 021995 166 DLDTMLPKCDIVVVNTPLT 184 (304)
Q Consensus 166 ~l~ell~~aDvVi~~~p~~ 184 (304)
+++++....|.|++++...
T Consensus 388 ~~~~l~~~~DaV~latGa~ 406 (639)
T PRK12809 388 TFSDLTSEYDAVFIGVGTY 406 (639)
T ss_pred CHHHHHhcCCEEEEeCCCC
Confidence 4556777899999987643
No 468
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=94.35 E-value=0.14 Score=47.23 Aligned_cols=89 Identities=18% Similarity=0.142 Sum_probs=59.9
Q ss_pred CCC-EEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec---CC----HHhhc-CcCCEEEEcCCCCh
Q 021995 116 EGK-TVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---ED----LDTML-PKCDIVVVNTPLTE 185 (304)
Q Consensus 116 ~g~-~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~---~~----l~ell-~~aDvVi~~~p~~~ 185 (304)
.|. +|.|.|. |.+|+.+++.++.+|++|++...+....+.+++.|+... .+ +..+. ...|+++-++...
T Consensus 144 ~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~- 222 (323)
T TIGR02823 144 PEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEEEDYLKELGASEVIDREDLSPPGKPLEKERWAGAVDTVGGH- 222 (323)
T ss_pred CCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcEEEccccHHHHHHHhcCCCceEEEECccHH-
Confidence 466 9999998 999999999999999998877665554555555554211 11 11121 1357776665421
Q ss_pred hhhccccHHHHhcCCCCCEEEEcCC
Q 021995 186 KTRGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 186 ~t~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
. ..+.++.++++..+|+++.
T Consensus 223 ----~-~~~~~~~l~~~G~~v~~g~ 242 (323)
T TIGR02823 223 ----T-LANVLAQLKYGGAVAACGL 242 (323)
T ss_pred ----H-HHHHHHHhCCCCEEEEEcc
Confidence 1 2467778888888888874
No 469
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=94.32 E-value=0.14 Score=47.91 Aligned_cols=91 Identities=26% Similarity=0.279 Sum_probs=60.3
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec-----CC-------HHhhcC--cCCEEEE
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----ED-------LDTMLP--KCDIVVV 179 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~-----~~-------l~ell~--~aDvVi~ 179 (304)
-.|++|.|.|.|.+|..+++.++.+|.+ |++..++....+..+++|.... .+ +.+... ..|+|+-
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~vld 240 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVIE 240 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCCEEEE
Confidence 4688999999999999999999999998 8888766544444444554211 11 222332 2688877
Q ss_pred cCCCChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995 180 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 180 ~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
+....+ .-...++.++++..+|.++-
T Consensus 241 ~~g~~~-----~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 241 CTGAES-----CIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred CCCCHH-----HHHHHHHHhhcCCEEEEEcc
Confidence 765321 12456777888888887763
No 470
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=94.29 E-value=0.39 Score=44.62 Aligned_cols=95 Identities=18% Similarity=0.285 Sum_probs=69.7
Q ss_pred cCCCEEEEEeeC-hhhHHHHHHhccCCCeEEEEcCCCCCh-----h----HHHhcC--ceecCCHHhhcCcCCEEEEcCC
Q 021995 115 LEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDP-----Q----LEKETG--AKFEEDLDTMLPKCDIVVVNTP 182 (304)
Q Consensus 115 L~g~~vgIIG~G-~IG~~lA~~l~~~G~~V~~~dr~~~~~-----~----~~~~~g--~~~~~~l~ell~~aDvVi~~~p 182 (304)
|.|+|+..+|=| +++.++......+|++|.+..|....+ + .+++.| +...+++++.++.+|+|..-+.
T Consensus 151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW 230 (310)
T COG0078 151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW 230 (310)
T ss_pred ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence 899999999965 589999998899999999988765222 1 122234 4556799999999999987654
Q ss_pred CC--hhhh-----------ccccHHHHhcCCCCCEEEEcC
Q 021995 183 LT--EKTR-----------GMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 183 ~~--~~t~-----------~~i~~~~l~~mk~g~ilVn~~ 209 (304)
.+ ++.+ .-+|.++++.-+++++|..|-
T Consensus 231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCL 270 (310)
T COG0078 231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCL 270 (310)
T ss_pred ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeCC
Confidence 32 2221 346778888888888888884
No 471
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=94.23 E-value=0.14 Score=47.13 Aligned_cols=88 Identities=13% Similarity=0.091 Sum_probs=57.6
Q ss_pred CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec---C--C----HHhhcC--cCCEEEEcCCC
Q 021995 116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---E--D----LDTMLP--KCDIVVVNTPL 183 (304)
Q Consensus 116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~---~--~----l~ell~--~aDvVi~~~p~ 183 (304)
.|.+|.|.|. |.+|+.+++.++.+|++|++...+....+..++.|+... . + +.++.. ..|+++-++..
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~ 218 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRALGIGPVVSTEQPGWQDKVREAAGGAPISVALDSVGG 218 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCCcEEEECCCC
Confidence 5789999986 999999999999999999888765544444444454211 0 1 112222 47777766542
Q ss_pred ChhhhccccHHHHhcCCCCCEEEEcC
Q 021995 184 TEKTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 184 ~~~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
. . ..+.++.++++..+|.++
T Consensus 219 ~-----~-~~~~~~~l~~~g~~v~~g 238 (324)
T cd08292 219 K-----L-AGELLSLLGEGGTLVSFG 238 (324)
T ss_pred h-----h-HHHHHHhhcCCcEEEEEe
Confidence 1 1 145677777777777775
No 472
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=94.17 E-value=0.035 Score=42.62 Aligned_cols=66 Identities=20% Similarity=0.183 Sum_probs=42.6
Q ss_pred CEEEEEeeChhhHHHHHHhc-cCCCe-EEEEcCCCCChhHHHhcCceecCCHHhhcCc--CCEEEEcCCCC
Q 021995 118 KTVGTVGCGRIGKLLLQRLK-PFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPK--CDIVVVNTPLT 184 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~-~~G~~-V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~--aDvVi~~~p~~ 184 (304)
.++.|+|+|+.|++++..+. ..|+. +.++|.++..... .-.|+..+.+++++.+. .|+-++++|..
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~-~i~gipV~~~~~~l~~~~~i~iaii~VP~~ 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGK-EIGGIPVYGSMDELEEFIEIDIAIITVPAE 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTS-EETTEEEESSHHHHHHHCTTSEEEEES-HH
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCc-EECCEEeeccHHHhhhhhCCCEEEEEcCHH
Confidence 47999999999999985443 45666 3466665532221 11244444467666555 99999999943
No 473
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=94.17 E-value=0.2 Score=46.42 Aligned_cols=88 Identities=17% Similarity=0.171 Sum_probs=59.6
Q ss_pred CCCEEEEE--eeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHH----hhc--CcCCEEEEcCC
Q 021995 116 EGKTVGTV--GCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLD----TML--PKCDIVVVNTP 182 (304)
Q Consensus 116 ~g~~vgII--G~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~----ell--~~aDvVi~~~p 182 (304)
.+.++.|+ |.|.+|..+++.++.+|.+|++.+++..+.+.++++|+..+ .++. ++. ...|+++-++.
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g 221 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVG 221 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEECCC
Confidence 45566665 88999999999999999999988877666666666665321 1221 222 24788877664
Q ss_pred CChhhhccccHHHHhcCCCCCEEEEcC
Q 021995 183 LTEKTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
.. . . ...+..++++..+|.++
T Consensus 222 ~~-~---~--~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 222 GG-L---T--GQILLAMPYGSTLYVYG 242 (324)
T ss_pred cH-H---H--HHHHHhhCCCCEEEEEE
Confidence 21 1 1 34567788888888876
No 474
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=94.14 E-value=1.6 Score=40.78 Aligned_cols=101 Identities=17% Similarity=0.215 Sum_probs=64.8
Q ss_pred HHHhCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeC-hhhHHHHHH
Q 021995 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCG-RIGKLLLQR 135 (304)
Q Consensus 57 ~~~~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G-~IG~~lA~~ 135 (304)
.++..+++|.|.-.....++ .+|+=++.+..++ | .+.|++|+++|-+ ++.++++..
T Consensus 110 ~a~~~~vPVINa~~~~~HPt--QaL~Dl~Ti~e~~--------------------g-~l~g~kva~vGD~~~v~~S~~~~ 166 (302)
T PRK14805 110 LAEHGSVPVINALCDLYHPC--QALADFLTLAEQF--------------------G-DVSKVKLAYVGDGNNVTHSLMYG 166 (302)
T ss_pred HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHHh--------------------C-CcCCcEEEEEcCCCccHHHHHHH
Confidence 35567899999855332221 2344444443311 1 4789999999974 577888999
Q ss_pred hccCCCeEEEEcCCCC-Chh--------HHHhcCce--ecCCHHhhcCcCCEEEEcC
Q 021995 136 LKPFNCNLLYHDRVKM-DPQ--------LEKETGAK--FEEDLDTMLPKCDIVVVNT 181 (304)
Q Consensus 136 l~~~G~~V~~~dr~~~-~~~--------~~~~~g~~--~~~~l~ell~~aDvVi~~~ 181 (304)
+..+|++|.+..|... +.+ .++..|.. ..+++ +.++++|+|....
T Consensus 167 ~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~ 222 (302)
T PRK14805 167 AAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT 222 (302)
T ss_pred HHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence 9999999999987542 221 12334543 34565 5689999998743
No 475
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=94.13 E-value=0.16 Score=47.56 Aligned_cols=89 Identities=19% Similarity=0.190 Sum_probs=60.2
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec-----CCH----HhhcC--cCCEEEEcCCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDL----DTMLP--KCDIVVVNTPL 183 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~-----~~l----~ell~--~aDvVi~~~p~ 183 (304)
.|.+|.|.|.|.+|+.+++.++..|+. |++.++++.+.....++|+... .++ .++.. ..|+++-+++.
T Consensus 174 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vdvvld~~g~ 253 (350)
T cd08256 174 FDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNPPEVDVVEKIKELTGGYGCDIYIEATGH 253 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence 578999999999999999999999987 5677776554555555664221 111 22222 37888877653
Q ss_pred ChhhhccccHHHHhcCCCCCEEEEcC
Q 021995 184 TEKTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 184 ~~~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
... -...++.++++..+|+++
T Consensus 254 ~~~-----~~~~~~~l~~~G~~v~~g 274 (350)
T cd08256 254 PSA-----VEQGLNMIRKLGRFVEFS 274 (350)
T ss_pred hHH-----HHHHHHHhhcCCEEEEEc
Confidence 211 145677788888888875
No 476
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=94.13 E-value=0.075 Score=50.41 Aligned_cols=85 Identities=20% Similarity=0.246 Sum_probs=49.9
Q ss_pred EEEEEe-eChhhHHHHHHhccCCCe---EEEEcCCCCChhHHHhcCce-ecCCH-HhhcCcCCEEEEcCCCChhhhcccc
Q 021995 119 TVGTVG-CGRIGKLLLQRLKPFNCN---LLYHDRVKMDPQLEKETGAK-FEEDL-DTMLPKCDIVVVNTPLTEKTRGMFD 192 (304)
Q Consensus 119 ~vgIIG-~G~IG~~lA~~l~~~G~~---V~~~dr~~~~~~~~~~~g~~-~~~~l-~ell~~aDvVi~~~p~~~~t~~~i~ 192 (304)
+|+|+| .|.+|+.+++.|...++. +.++.+.....+.....+.. .+.++ .+.+.++|+++.|+|....
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~s------ 74 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSVS------ 74 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHHH------
Confidence 589999 799999999999886665 33333322111111111211 11111 2345889999999985422
Q ss_pred HHHHhc-CCCCCEEEEcC
Q 021995 193 KDRIAK-MKKGVLIVNNA 209 (304)
Q Consensus 193 ~~~l~~-mk~g~ilVn~~ 209 (304)
.+..+. ++.|+.+||.+
T Consensus 75 ~~~a~~~~~~G~~VID~s 92 (339)
T TIGR01296 75 KEFAPKAAKCGAIVIDNT 92 (339)
T ss_pred HHHHHHHHHCCCEEEECC
Confidence 222222 35688899887
No 477
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.09 E-value=0.14 Score=50.26 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=67.6
Q ss_pred EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChh-----HHHhcCceec--CCHH-----hhcCcCCEEEEcCCCChh
Q 021995 119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-----LEKETGAKFE--EDLD-----TMLPKCDIVVVNTPLTEK 186 (304)
Q Consensus 119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~-----~~~~~g~~~~--~~l~-----ell~~aDvVi~~~p~~~~ 186 (304)
+|.|||.|..|.+.|+.|...|++|.++|+...+.. ...+.|+... ...+ +.+.+.|.|+......+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD 81 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence 689999999999999999999999999997653211 1234455432 1111 467789988874322221
Q ss_pred hh----------ccccH-HHH-hcCCC-CCEEEEcCCCchhchHHHHHHHHcCC
Q 021995 187 TR----------GMFDK-DRI-AKMKK-GVLIVNNARGAIMDTQAVVDACSSGH 227 (304)
Q Consensus 187 t~----------~~i~~-~~l-~~mk~-g~ilVn~~rg~~vd~~aL~~aL~~g~ 227 (304)
.. .++.+ +.+ ..+++ ..+-|--+.|+.-...-|.+.|+...
T Consensus 82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~g 135 (459)
T PRK02705 82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAAG 135 (459)
T ss_pred CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 11 11222 222 33333 34556666788888887777777643
No 478
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=94.09 E-value=0.21 Score=46.78 Aligned_cols=89 Identities=20% Similarity=0.207 Sum_probs=57.5
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-C----C----HHhhcC-cCCEEEEcCCCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-E----D----LDTMLP-KCDIVVVNTPLT 184 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-~----~----l~ell~-~aDvVi~~~p~~ 184 (304)
.|.+|.|.|.|.+|..+++.++..|+ +|++.+++....+...++|+..+ . + +.+... ..|+++-+.+..
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~ 254 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAGGGVDAVIDFVNNS 254 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecCCCccHHHHHHHHhCCCCcEEEECCCCH
Confidence 58899999999999999999999999 67777765544455555554211 0 1 112222 367777655421
Q ss_pred hhhhccccHHHHhcCCCCCEEEEcC
Q 021995 185 EKTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 185 ~~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
.. -...+..|+++..+|.++
T Consensus 255 ~~-----~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 255 AT-----ASLAFDILAKGGKLVLVG 274 (350)
T ss_pred HH-----HHHHHHHhhcCCeEEEEC
Confidence 11 245567777777777764
No 479
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=94.08 E-value=0.13 Score=50.49 Aligned_cols=108 Identities=17% Similarity=0.176 Sum_probs=68.7
Q ss_pred EEEEeeChhhHH-HHHHhccCCCeEEEEcCCCCC-hhHHHhcCceecCC-HHhhcCcCCEEEEcC--CC-Chhhh-----
Q 021995 120 VGTVGCGRIGKL-LLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEED-LDTMLPKCDIVVVNT--PL-TEKTR----- 188 (304)
Q Consensus 120 vgIIG~G~IG~~-lA~~l~~~G~~V~~~dr~~~~-~~~~~~~g~~~~~~-l~ell~~aDvVi~~~--p~-~~~t~----- 188 (304)
+-+||.|.+|.+ +|+.|+..|++|.++|..... .+..++.|+..... -.+.+.++|+|+..- |. +|...
T Consensus 2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~~ 81 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKER 81 (448)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHc
Confidence 679999999998 999999999999999975432 12233446554321 124567899988752 32 22211
Q ss_pred --ccccH-HHHhc-CC-CCCEEEEcCCCchhchHHHHHHHHcCC
Q 021995 189 --GMFDK-DRIAK-MK-KGVLIVNNARGAIMDTQAVVDACSSGH 227 (304)
Q Consensus 189 --~~i~~-~~l~~-mk-~g~ilVn~~rg~~vd~~aL~~aL~~g~ 227 (304)
.++.+ +++.. ++ ...+-|--+.|+.-...-+...|+...
T Consensus 82 ~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g 125 (448)
T TIGR01082 82 GIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG 125 (448)
T ss_pred CCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC
Confidence 12322 33323 32 335566666799888888888887654
No 480
>PLN02427 UDP-apiose/xylose synthase
Probab=94.06 E-value=0.1 Score=49.90 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=48.2
Q ss_pred cccccCCCEEEEEe-eChhhHHHHHHhccC-CCeEEEEcCCCCChhHHHhc-------Ccee-------cCCHHhhcCcC
Q 021995 111 RAYDLEGKTVGTVG-CGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKET-------GAKF-------EEDLDTMLPKC 174 (304)
Q Consensus 111 ~~~~L~g~~vgIIG-~G~IG~~lA~~l~~~-G~~V~~~dr~~~~~~~~~~~-------g~~~-------~~~l~ell~~a 174 (304)
.|..++.++|.|.| .|-||+.+++.|... |++|++++++.......... +++. ...++++++++
T Consensus 8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~ 87 (386)
T PLN02427 8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMA 87 (386)
T ss_pred CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcC
Confidence 35567888999999 599999999999877 69999999764322111111 1111 12456778889
Q ss_pred CEEEEcC
Q 021995 175 DIVVVNT 181 (304)
Q Consensus 175 DvVi~~~ 181 (304)
|+|+-+.
T Consensus 88 d~ViHlA 94 (386)
T PLN02427 88 DLTINLA 94 (386)
T ss_pred CEEEEcc
Confidence 9886554
No 481
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.04 E-value=0.14 Score=47.22 Aligned_cols=90 Identities=22% Similarity=0.159 Sum_probs=60.9
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-----CCHHh---h--cCcCCEEEEcCCCCh
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDT---M--LPKCDIVVVNTPLTE 185 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~e---l--l~~aDvVi~~~p~~~ 185 (304)
.|.+|.|.|.|.+|+.+++.++..|.+|++.+++....+..++.|+... .+..+ . -...|+++.++...+
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g~~~ 244 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVGTQP 244 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCCCHH
Confidence 5679999999999999999999999999988876654555555554211 11111 1 134788777654221
Q ss_pred hhhccccHHHHhcCCCCCEEEEcCC
Q 021995 186 KTRGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 186 ~t~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
.-.+.+..|++++.+|.++-
T Consensus 245 -----~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 245 -----TFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred -----HHHHHHHHhhcCCEEEEECC
Confidence 12456778888888888864
No 482
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=94.03 E-value=0.15 Score=47.58 Aligned_cols=89 Identities=21% Similarity=0.197 Sum_probs=57.4
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec-----CCH----HhhcC--cCCEEEEcCCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDL----DTMLP--KCDIVVVNTPL 183 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~-----~~l----~ell~--~aDvVi~~~p~ 183 (304)
.|.+|.|.|.|.+|+.+++.++..|.+ +++.+++....+..+++|+... .+. ..+.. ..|+++-++..
T Consensus 168 ~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~~~~~~~~d~il~~~g~ 247 (345)
T cd08287 168 PGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAERGEEAVARVRELTGGVGADAVLECVGT 247 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCCCCEEEECCCC
Confidence 578999999999999999999999996 7777765544445555564221 011 11222 37777766532
Q ss_pred ChhhhccccHHHHhcCCCCCEEEEcC
Q 021995 184 TEKTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 184 ~~~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
. . . -...++.++++..++..+
T Consensus 248 ~-~---~-~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 248 Q-E---S-MEQAIAIARPGGRVGYVG 268 (345)
T ss_pred H-H---H-HHHHHHhhccCCEEEEec
Confidence 1 1 1 145566677777777765
No 483
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=94.03 E-value=0.33 Score=50.10 Aligned_cols=69 Identities=20% Similarity=0.247 Sum_probs=49.9
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCCC---------------------hhHHHhcCceec--------CC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE--------ED 166 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~~---------------------~~~~~~~g~~~~--------~~ 166 (304)
.+++|.|||.|..|-..|..|...|++|+++++.... .+.....|++.. .+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~ 271 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDIT 271 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccC
Confidence 6789999999999999999999999999999875421 112234454321 13
Q ss_pred HHhhcCcCCEEEEcCCCC
Q 021995 167 LDTMLPKCDIVVVNTPLT 184 (304)
Q Consensus 167 l~ell~~aDvVi~~~p~~ 184 (304)
++++....|.|++++...
T Consensus 272 ~~~~~~~~DaVilAtGa~ 289 (652)
T PRK12814 272 LEELQKEFDAVLLAVGAQ 289 (652)
T ss_pred HHHHHhhcCEEEEEcCCC
Confidence 455555699999987654
No 484
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=94.02 E-value=2.1 Score=43.23 Aligned_cols=173 Identities=11% Similarity=0.064 Sum_probs=108.7
Q ss_pred hCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhcc-
Q 021995 60 AAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKP- 138 (304)
Q Consensus 60 ~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~- 138 (304)
+..|.+.|..= .-+|-.+++.+|+.+|- .+..|...+|.|.|.|..|-.+|+.+..
T Consensus 263 r~~i~~FnDDi---QGTaaV~lAgll~Alr~--------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~ 319 (559)
T PTZ00317 263 QNKYRCFNDDI---QGTGAVIAAGFLNALKL--------------------SGVPPEEQRIVFFGAGSAAIGVANNIADL 319 (559)
T ss_pred ccCCCEecccc---hhHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECCCHHHHHHHHHHHHH
Confidence 34588777653 44566778889998883 2346899999999999999999998863
Q ss_pred ---CCC-------eEEEEcCCCC----C---hh-----HHHhcCcee---cCCHHhhcCcC--CEEEEcCCCChhhhccc
Q 021995 139 ---FNC-------NLLYHDRVKM----D---PQ-----LEKETGAKF---EEDLDTMLPKC--DIVVVNTPLTEKTRGMF 191 (304)
Q Consensus 139 ---~G~-------~V~~~dr~~~----~---~~-----~~~~~g~~~---~~~l~ell~~a--DvVi~~~p~~~~t~~~i 191 (304)
.|. +++.+|+... . .. .++...-.. ..+|.|+++.. |+++=+.. ..+.+
T Consensus 320 m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~----~~g~F 395 (559)
T PTZ00317 320 AAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSG----VGGVF 395 (559)
T ss_pred HHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecC----CCCCC
Confidence 577 6888887631 0 00 111110011 34899999998 99875432 13688
Q ss_pred cHHHHhcCC---CCCEEEEcCCCchhchHHHHHHHH--cCCceEEEeecCCCCCCCCCCC---ccCCCCeEEccCCCc
Q 021995 192 DKDRIAKMK---KGVLIVNNARGAIMDTQAVVDACS--SGHIAGYSGDVWNPQPAPKDHP---WRYMPNQAMTPHVSG 261 (304)
Q Consensus 192 ~~~~l~~mk---~g~ilVn~~rg~~vd~~aL~~aL~--~g~i~ga~lDV~~~ep~~~~~~---l~~~~nv~lTPHia~ 261 (304)
.++.++.|. +..++.-.|+....-|-.-.++.+ +|+...|.=--| +|..-+.. .-+..|+++=|=++-
T Consensus 396 t~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf--~pv~~~G~~~~p~Q~NN~~iFPGigl 471 (559)
T PTZ00317 396 TEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPF--PPVTLNGKTIQPSQGNNLYVFPGVGL 471 (559)
T ss_pred CHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCC--CCcccCCeeeccCcCcceeeccchhh
Confidence 899999987 489999999887544444444444 455332211111 12111111 123457888887653
No 485
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=94.00 E-value=0.11 Score=49.08 Aligned_cols=72 Identities=18% Similarity=0.149 Sum_probs=48.9
Q ss_pred cccccCCCEEEEEe-eChhhHHHHHHhccCCCeEEEEcCCCCChhHH-Hhc----Ccee-------cCCHHhhcCcCCEE
Q 021995 111 RAYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KET----GAKF-------EEDLDTMLPKCDIV 177 (304)
Q Consensus 111 ~~~~L~g~~vgIIG-~G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~-~~~----g~~~-------~~~l~ell~~aDvV 177 (304)
.+++..+++|.|.| .|-||+.+++.|...|++|++.+++....... ... .+.. ...+++++++.|+|
T Consensus 4 ~~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 83 (353)
T PLN02896 4 EGRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGV 83 (353)
T ss_pred cccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEE
Confidence 35678999999999 59999999999999999999888754322211 110 1111 12345667788988
Q ss_pred EEcCC
Q 021995 178 VVNTP 182 (304)
Q Consensus 178 i~~~p 182 (304)
+-+..
T Consensus 84 ih~A~ 88 (353)
T PLN02896 84 FHVAA 88 (353)
T ss_pred EECCc
Confidence 76553
No 486
>PLN02702 L-idonate 5-dehydrogenase
Probab=94.00 E-value=0.14 Score=48.38 Aligned_cols=90 Identities=16% Similarity=0.182 Sum_probs=61.3
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec-------CCHHh----h----cCcCCEEEE
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-------EDLDT----M----LPKCDIVVV 179 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~-------~~l~e----l----l~~aDvVi~ 179 (304)
.|.+|.|+|.|.+|..+++.++.+|++ |++.+++..+.+.++++|+... .++.+ + -...|+++-
T Consensus 181 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vid 260 (364)
T PLN02702 181 PETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVSFD 260 (364)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCCEEEE
Confidence 678999999999999999999999986 6777775544455555664321 12222 1 124788887
Q ss_pred cCCCChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995 180 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 180 ~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
+...... -.+.++.++++..++.++.
T Consensus 261 ~~g~~~~-----~~~~~~~l~~~G~~v~~g~ 286 (364)
T PLN02702 261 CVGFNKT-----MSTALEATRAGGKVCLVGM 286 (364)
T ss_pred CCCCHHH-----HHHHHHHHhcCCEEEEEcc
Confidence 7653211 2566777888888888764
No 487
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=94.00 E-value=0.11 Score=49.11 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=24.4
Q ss_pred EEEEEeeChhhHHHHHHhccC----CCeEEEEcC
Q 021995 119 TVGTVGCGRIGKLLLQRLKPF----NCNLLYHDR 148 (304)
Q Consensus 119 ~vgIIG~G~IG~~lA~~l~~~----G~~V~~~dr 148 (304)
+|||+|+|+||+.+.+.|... +++|...+.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd 34 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE 34 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 589999999999999998754 378776654
No 488
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.99 E-value=0.12 Score=48.31 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=42.6
Q ss_pred EEEEEeeChhhHHHHHHhccCCC--eEEEEcCCCCChh-HHHhc----------CceecCCHHhhcCcCCEEEEcCC
Q 021995 119 TVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET----------GAKFEEDLDTMLPKCDIVVVNTP 182 (304)
Q Consensus 119 ~vgIIG~G~IG~~lA~~l~~~G~--~V~~~dr~~~~~~-~~~~~----------g~~~~~~l~ell~~aDvVi~~~p 182 (304)
+|+|||.|.+|..+|..|...|. ++..+|.+....+ .+.++ .+....+-.+.+++||+|+++.-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 58999999999999998865554 6999998653221 11111 11111122467899999999864
No 489
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=93.99 E-value=0.15 Score=45.44 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=33.5
Q ss_pred ccCCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCC
Q 021995 114 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK 150 (304)
Q Consensus 114 ~L~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~ 150 (304)
.+.||++.|.|. |.||+.+++.|...|++|++.+|+.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~ 44 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP 44 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 478999999995 9999999999999999999998864
No 490
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=93.99 E-value=0.17 Score=47.21 Aligned_cols=90 Identities=21% Similarity=0.278 Sum_probs=58.5
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCC-eEEEEcCCCCChhHHHhcCceec-----CCH---HhhcC--cCCEEEEcCCCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDL---DTMLP--KCDIVVVNTPLT 184 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-----~~l---~ell~--~aDvVi~~~p~~ 184 (304)
.|.+|.|.|.|.+|+.+++.++.+|+ +|++.+++..+.+..+++|...+ .++ .++.. ..|+++-+....
T Consensus 163 ~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~g~~ 242 (341)
T cd05281 163 SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMSGNP 242 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEECCCCH
Confidence 57899999999999999999999999 68777655444444455554221 111 12222 477777766422
Q ss_pred hhhhccccHHHHhcCCCCCEEEEcCC
Q 021995 185 EKTRGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 185 ~~t~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
.. ..+.+..++++..++.++.
T Consensus 243 ~~-----~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 243 KA-----IEQGLKALTPGGRVSILGL 263 (341)
T ss_pred HH-----HHHHHHHhccCCEEEEEcc
Confidence 11 2455677788888887763
No 491
>PRK06182 short chain dehydrogenase; Validated
Probab=93.97 E-value=0.089 Score=47.54 Aligned_cols=67 Identities=18% Similarity=0.156 Sum_probs=45.2
Q ss_pred CCCEEEEEee-ChhhHHHHHHhccCCCeEEEEcCCCCChhHHHhcCceec-------CCHHhhcC-------cCCEEEEc
Q 021995 116 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-------EDLDTMLP-------KCDIVVVN 180 (304)
Q Consensus 116 ~g~~vgIIG~-G~IG~~lA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-------~~l~ell~-------~aDvVi~~ 180 (304)
.++++.|.|. |.||+.+++.|...|++|++.+|+....+.....++... ++++++++ ..|+++.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~ 81 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNN 81 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 4789999995 899999999999999999999986533322222222211 12233333 67999887
Q ss_pred CC
Q 021995 181 TP 182 (304)
Q Consensus 181 ~p 182 (304)
..
T Consensus 82 ag 83 (273)
T PRK06182 82 AG 83 (273)
T ss_pred CC
Confidence 64
No 492
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.94 E-value=0.11 Score=49.08 Aligned_cols=64 Identities=17% Similarity=0.096 Sum_probs=43.6
Q ss_pred EEEEEee-ChhhHHHHHHhccCC-------CeEEEEcCCCCC--hhH-HHhc---------CceecCCHHhhcCcCCEEE
Q 021995 119 TVGTVGC-GRIGKLLLQRLKPFN-------CNLLYHDRVKMD--PQL-EKET---------GAKFEEDLDTMLPKCDIVV 178 (304)
Q Consensus 119 ~vgIIG~-G~IG~~lA~~l~~~G-------~~V~~~dr~~~~--~~~-~~~~---------g~~~~~~l~ell~~aDvVi 178 (304)
+|+|+|. |.+|+.++..|...+ .+|..+|+.... .+. ..+. .+....++.+.+++||+|+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI 83 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI 83 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence 7999999 999999999987633 489999985421 110 0000 1112346678899999998
Q ss_pred EcCC
Q 021995 179 VNTP 182 (304)
Q Consensus 179 ~~~p 182 (304)
.+.-
T Consensus 84 ~tAG 87 (325)
T cd01336 84 LVGA 87 (325)
T ss_pred EeCC
Confidence 8754
No 493
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=93.93 E-value=0.083 Score=47.80 Aligned_cols=90 Identities=19% Similarity=0.255 Sum_probs=63.0
Q ss_pred EEEEEeeChhhHHHHHHhccCCC----eEEEEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhccccH
Q 021995 119 TVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 193 (304)
Q Consensus 119 ~vgIIG~G~IG~~lA~~l~~~G~----~V~~~dr~~~~~~~-~~~~g~~~~~~l~ell~~aDvVi~~~p~~~~t~~~i~~ 193 (304)
++|+||.|.|..++++-+.+.|. +++.+.++...... ++..|++.+.+-.+.++.+|++++++- |. + -.
T Consensus 2 ~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svK--p~---~-i~ 75 (267)
T KOG3124|consen 2 KVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVK--PQ---V-IE 75 (267)
T ss_pred ceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeec--ch---h-HH
Confidence 68999999999999999988774 46666664433344 566777665455788889999999984 21 1 13
Q ss_pred HHHhc----CCCCCEEEEcCCCchh
Q 021995 194 DRIAK----MKKGVLIVNNARGAIM 214 (304)
Q Consensus 194 ~~l~~----mk~g~ilVn~~rg~~v 214 (304)
..+.. ...+.+++.+.-|..+
T Consensus 76 ~vls~~~~~~~~~~iivS~aaG~tl 100 (267)
T KOG3124|consen 76 SVLSEIKPKVSKGKIIVSVAAGKTL 100 (267)
T ss_pred HHhhcCccccccceEEEEEeecccH
Confidence 33333 4556788888877654
No 494
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=93.91 E-value=0.096 Score=56.48 Aligned_cols=93 Identities=9% Similarity=0.125 Sum_probs=63.4
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCCeEEEEcCCCC-------------------------ChhHHHhcC---------
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-------------------------DPQLEKETG--------- 160 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~-------------------------~~~~~~~~g--------- 160 (304)
+.-.++.|+|.|++|+..++.+..+|++ . .++... ..+.....+
T Consensus 201 v~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~ 278 (1042)
T PLN02819 201 ICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKAD 278 (1042)
T ss_pred CCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhh
Confidence 4457899999999999999999988776 2 222110 000000000
Q ss_pred -----ceecCC-HHhhcCcCCEEEEcCCCChhhhccccHH-HHhcCCCCC----EEEEcC
Q 021995 161 -----AKFEED-LDTMLPKCDIVVVNTPLTEKTRGMFDKD-RIAKMKKGV----LIVNNA 209 (304)
Q Consensus 161 -----~~~~~~-l~ell~~aDvVi~~~p~~~~t~~~i~~~-~l~~mk~g~----ilVn~~ 209 (304)
-.+.+. +++.++.+|+++.|+-..+.+..++.++ ..+.||+|. +++|++
T Consensus 279 y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs 338 (1042)
T PLN02819 279 YYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT 338 (1042)
T ss_pred hccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence 001111 3568889999999997777788889888 778899998 899886
No 495
>PRK08374 homoserine dehydrogenase; Provisional
Probab=93.91 E-value=0.21 Score=47.38 Aligned_cols=107 Identities=18% Similarity=0.295 Sum_probs=61.0
Q ss_pred CEEEEEeeChhhHHHHHHhcc--------CC--CeEEEE-cCCC-------CChhHHH----hcCc-e-e-------cCC
Q 021995 118 KTVGTVGCGRIGKLLLQRLKP--------FN--CNLLYH-DRVK-------MDPQLEK----ETGA-K-F-------EED 166 (304)
Q Consensus 118 ~~vgIIG~G~IG~~lA~~l~~--------~G--~~V~~~-dr~~-------~~~~~~~----~~g~-~-~-------~~~ 166 (304)
.+|+|+|||++|+.+++.|.. +| .+|.++ |++. ...+... +.+. . . ..+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 489999999999999998865 56 555533 4431 1111111 1110 0 0 115
Q ss_pred HHhhc--CcCCEEEEcCCCChhhhccccHHHHhcCCCCCEEEEcCCCchh-chHHHHHHHHcCCce
Q 021995 167 LDTML--PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA 229 (304)
Q Consensus 167 l~ell--~~aDvVi~~~p~~~~t~~~i~~~~l~~mk~g~ilVn~~rg~~v-d~~aL~~aL~~g~i~ 229 (304)
+++++ ..+|+|+-+.+..+ . ..-..+.++.|.-+|-...|.+- ..++|.+..+++...
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~-a----~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~ 143 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKN-A----HEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLP 143 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHH-H----HHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCe
Confidence 67777 47999997775321 1 12333456677777766665443 455666655555443
No 496
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=93.91 E-value=0.24 Score=46.16 Aligned_cols=89 Identities=24% Similarity=0.274 Sum_probs=60.0
Q ss_pred CCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec--------CCHHhhcC--cCCEEEEcCCCC
Q 021995 116 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE--------EDLDTMLP--KCDIVVVNTPLT 184 (304)
Q Consensus 116 ~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~--------~~l~ell~--~aDvVi~~~p~~ 184 (304)
.|.+|.|.|.|.+|+.+++.++.+|.+ |++.+++....+...+.|.... ..+..... ..|+++-+....
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~ 238 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEAAGSP 238 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEECCCCH
Confidence 467999999999999999999999998 8888876544444444453211 01122332 378888776421
Q ss_pred hhhhccccHHHHhcCCCCCEEEEcC
Q 021995 185 EKTRGMFDKDRIAKMKKGVLIVNNA 209 (304)
Q Consensus 185 ~~t~~~i~~~~l~~mk~g~ilVn~~ 209 (304)
. .....+..|+++..++.++
T Consensus 239 ~-----~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 239 A-----TIEQALALARPGGKVVLVG 258 (343)
T ss_pred H-----HHHHHHHHhhcCCEEEEEc
Confidence 1 1245677788888888886
No 497
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.90 E-value=0.084 Score=38.79 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=30.4
Q ss_pred EEEEEeeChhhHHHHHHhccCCCeEEEEcCCCC
Q 021995 119 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM 151 (304)
Q Consensus 119 ~vgIIG~G~IG~~lA~~l~~~G~~V~~~dr~~~ 151 (304)
++.|||.|.+|-.+|..|+.+|.+|+.+.+.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 589999999999999999999999999988763
No 498
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=93.88 E-value=2.9 Score=42.41 Aligned_cols=168 Identities=13% Similarity=0.085 Sum_probs=108.4
Q ss_pred hCCcEEEEcCCCChhHHHHHHHHHHHHHHhCcchhhHHHHhCCcccccccccccccCCCEEEEEeeChhhHHHHHHhcc-
Q 021995 60 AAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKP- 138 (304)
Q Consensus 60 ~~gI~v~n~~g~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~L~g~~vgIIG~G~IG~~lA~~l~~- 138 (304)
+..|.+.|..= .-+|--+++.+|+.+|- .+..|...+|.|+|.|..|-.+|+.+..
T Consensus 287 r~~i~~FnDDi---QGTaaV~lAgll~A~r~--------------------~g~~l~d~riv~~GAGsAgigia~ll~~~ 343 (581)
T PLN03129 287 RTTHLCFNDDI---QGTAAVALAGLLAALRA--------------------TGGDLADQRILFAGAGEAGTGIAELIALA 343 (581)
T ss_pred ccCCCEecccc---chHHHHHHHHHHHHHHH--------------------hCCchhhceEEEECCCHHHHHHHHHHHHH
Confidence 45788777653 44566678888888883 2446899999999999999999998876
Q ss_pred ----CCC-------eEEEEcCCCC-----C--h-----hHHHhcCceecCCHHhhcCc--CCEEEEcCCCChhhhccccH
Q 021995 139 ----FNC-------NLLYHDRVKM-----D--P-----QLEKETGAKFEEDLDTMLPK--CDIVVVNTPLTEKTRGMFDK 193 (304)
Q Consensus 139 ----~G~-------~V~~~dr~~~-----~--~-----~~~~~~g~~~~~~l~ell~~--aDvVi~~~p~~~~t~~~i~~ 193 (304)
.|. +++.+|+... . . ..++. .....+|.|+++. .|+++=+.. .-+++.+
T Consensus 344 ~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~--~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~ 417 (581)
T PLN03129 344 MSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHD--HEPGASLLEAVKAIKPTVLIGLSG----VGGTFTK 417 (581)
T ss_pred HHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhh--cccCCCHHHHHhccCCCEEEEecC----CCCCCCH
Confidence 466 6888887641 0 1 11111 1234589999998 899875442 1268889
Q ss_pred HHHhcCC---CCCEEEEcCCCchhchHHHHHHHH--cCCceEEEeecCCCCCCCC---CC---CccCCCCeEEccCCCc
Q 021995 194 DRIAKMK---KGVLIVNNARGAIMDTQAVVDACS--SGHIAGYSGDVWNPQPAPK---DH---PWRYMPNQAMTPHVSG 261 (304)
Q Consensus 194 ~~l~~mk---~g~ilVn~~rg~~vd~~aL~~aL~--~g~i~ga~lDV~~~ep~~~---~~---~l~~~~nv~lTPHia~ 261 (304)
+.++.|. +..++.-.|.....-|-.-.++.+ +|+...| ..-|.++ +. ..-+..|+++=|=++-
T Consensus 418 evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~A-----tGSPf~pv~~~Gr~~~p~Q~NN~~iFPGigl 491 (581)
T PLN03129 418 EVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFA-----SGSPFDPVEYNGKTFHPGQANNAYIFPGIGL 491 (581)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEE-----eCCCCCCeeeCCeeecCccccceeeccchhh
Confidence 9999995 889999999887444433333333 3553322 1123221 10 1123457888887753
No 499
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=93.87 E-value=0.11 Score=50.36 Aligned_cols=37 Identities=22% Similarity=0.180 Sum_probs=32.4
Q ss_pred cccCCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCC
Q 021995 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV 149 (304)
Q Consensus 113 ~~L~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~ 149 (304)
..|...+|.|||+|.+|..+++.|...|.. +..+|..
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 368999999999999999999999988874 7788764
No 500
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=93.85 E-value=0.19 Score=46.87 Aligned_cols=91 Identities=19% Similarity=0.263 Sum_probs=61.1
Q ss_pred cCCCEEEEEeeChhhHHHHHHhccCCCe-EEEEcCCCCChhHHHhcCceec-----CCH----Hhhc--CcCCEEEEcCC
Q 021995 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDL----DTML--PKCDIVVVNTP 182 (304)
Q Consensus 115 L~g~~vgIIG~G~IG~~lA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~-----~~l----~ell--~~aDvVi~~~p 182 (304)
..|.+|.|.|.|.+|+.+++.++..|.+ |++.++++.+.+..+++|+... .++ .++. +..|+++-+..
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~~g 239 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMSG 239 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEECCC
Confidence 3688999999999999999999999997 8777665544444555554221 122 1222 24788877654
Q ss_pred CChhhhccccHHHHhcCCCCCEEEEcCC
Q 021995 183 LTEKTRGMFDKDRIAKMKKGVLIVNNAR 210 (304)
Q Consensus 183 ~~~~t~~~i~~~~l~~mk~g~ilVn~~r 210 (304)
... . ..+.++.|++++.++.++.
T Consensus 240 ~~~----~-~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 240 APK----A-LEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred CHH----H-HHHHHHhhcCCCEEEEEcc
Confidence 221 1 2456778888888888874
Done!