RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021995
(304 letters)
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 369 bits (949), Expect = e-128
Identities = 210/248 (84%), Positives = 231/248 (93%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
AAAAAGLTVAEVTGSNVVSVAEDELMRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLE
Sbjct: 104 AAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLE 163
Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
GKT+GTVG GRIGKLLLQRLKPF CNLLYHDR++M P+LEKETGAKF EDL+ MLPKCD+
Sbjct: 164 GKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDV 223
Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
+V+N PLTEKTRGMF+K+ I K+KKGVLIVNNARGAIM+ QAVVDA SGHI GYSGDVW
Sbjct: 224 IVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVW 283
Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKA 296
+PQPAPKDHPWRYMPNQAMTPH SGTTIDAQLRYAAG KDML+RYFKGEDFP +NYIVK
Sbjct: 284 DPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKD 343
Query: 297 GELAPQYR 304
GELAPQYR
Sbjct: 344 GELAPQYR 351
Score = 34.5 bits (80), Expect = 0.031
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 35 SKKIVGVFYKGNEYASMNPNFLAAAAAGLTVAEV---TGSNVVSVAE-----DELMRIL- 85
SKKIVGVFYK NEYA+ NPNFL L + + G + + EL + +
Sbjct: 2 SKKIVGVFYKANEYATKNPNFLGCVENALGIRDWLESQGHQYIVTDDKEGPDCELEKHIP 61
Query: 86 ----ILVRNFLP 93
++ F P
Sbjct: 62 DLHVLISTPFHP 73
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 356 bits (916), Expect = e-123
Identities = 118/246 (47%), Positives = 153/246 (62%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
+A +TVAEVT N +SVAE +M IL LVRN+LP H G WN+A AYDLE
Sbjct: 131 SAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLE 190
Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
VGTV GRIG +L+RL PF+ +L Y DR ++ +EKE + + M P CD+
Sbjct: 191 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDV 250
Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
V +N PL +T M + + + K+G IVN ARG + D AV A SG +AGY+GDVW
Sbjct: 251 VTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVW 310
Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKA 296
PQPAPKDHPWR MP MTPH+SGTT+ AQ RYAAG +++L+ +F+G + IV+
Sbjct: 311 FPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQG 370
Query: 297 GELAPQ 302
G LA
Sbjct: 371 GALAGT 376
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 335 bits (860), Expect = e-115
Identities = 124/255 (48%), Positives = 168/255 (65%), Gaps = 9/255 (3%)
Query: 57 AAAAAGL--TVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYD 114
G +V EVTGSNVVSVAE +M +L+LVRNF+P H Q+I+ +W VA +A AYD
Sbjct: 102 YINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYD 161
Query: 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 173
+EGKT+ T+G GRIG +L+RL PFN LLY+D + E++ GA+ E+++ ++ +
Sbjct: 162 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQ 221
Query: 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 233
DIV VN PL T+G+ +K+ ++K KKG +VN ARGAI + V A SG + GY G
Sbjct: 222 ADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGG 281
Query: 234 DVWNPQPAPKDHPWRYMPN-----QAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DF 287
DVW PQPAPKDHPWR M N AMTPH SGTT+DAQ RYA G ++L+ +F G+ D+
Sbjct: 282 DVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGTVNILESFFTGKFDY 341
Query: 288 PVQNYIVKAGELAPQ 302
Q+ I+ GE +
Sbjct: 342 RPQDIILLNGEYGTK 356
Score = 33.8 bits (78), Expect = 0.051
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 13/71 (18%)
Query: 37 KIVGVFYKGNEYASMNPNFLAAAAAGLTVA--------EVTGSNVVSVAEDELMRIL--- 85
KIV V Y ++A+ L +A E+ ++ L + +
Sbjct: 2 KIVLVLYDAGKHAADEEKLYGCTENKLGIANWLKDQGHELITTSDKEGGNSVLDQHIPDA 61
Query: 86 --ILVRNFLPG 94
I+ F P
Sbjct: 62 DIIITTPFHPA 72
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 203 bits (519), Expect = 3e-64
Identities = 53/239 (22%), Positives = 90/239 (37%), Gaps = 14/239 (5%)
Query: 56 LAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDL 115
+ +TVA GSN +VAE L +L + + ++ G++ +
Sbjct: 66 WESIPPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRD---VEIPLI 122
Query: 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCD 175
+G+ V +G G IG + + L + R KE +F L+ L +
Sbjct: 123 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRT------PKEGPWRFTNSLEEALREAR 176
Query: 176 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 235
V PL + TRG+ +A M + + VN R ++D V+ ++ DV
Sbjct: 177 AAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDV 236
Query: 236 -WNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAG--VKDMLDRYFKGEDFPVQN 291
W KD + +PN TP V+G + ++ L Y G +N
Sbjct: 237 WWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLITYATGG--RPRN 293
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 203 bits (520), Expect = 5e-64
Identities = 59/239 (24%), Positives = 98/239 (41%), Gaps = 8/239 (3%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
A A G+ + V V AE + + L R+ V SG++ + L+
Sbjct: 85 ACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLD 144
Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
TVG +G G IG + RL+ + L YH+ +D Q E+ G + + D
Sbjct: 145 NATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQV-ACSELFASSDF 203
Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV- 235
+++ PL T + + + +A ++ G L+VN RG+++D AV+ A G + GY+ DV
Sbjct: 204 ILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVF 263
Query: 236 ------WNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
+P D PN TPH+ +L + + GE
Sbjct: 264 EMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERPI 322
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 200 bits (511), Expect = 3e-63
Identities = 52/236 (22%), Positives = 98/236 (41%), Gaps = 14/236 (5%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
+ + G+ +SVAE +L +N L + + +G + L
Sbjct: 67 GIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNILENNELMKAGIFR----QSPTTLLY 121
Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
GK +G +G G IG+ + K F ++ + R +++ E + + D
Sbjct: 122 GKALGILGYGGIGRRVAHLAKAFGMRVIAYTRS----SVDQNVDVISE-SPADLFRQSDF 176
Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
V++ PLT+KTRGM + +A +K + IVN AR ++ ++ Y DVW
Sbjct: 177 VLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVW 236
Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGV-KDMLDRYFKGEDFPVQN 291
+P + + N ++PHV+G + A + + + +F+GE +
Sbjct: 237 WNEPEITETN---LRNAILSPHVAGGMSGEIMDIAIQLAFENVRNFFEGEGHHHHH 289
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 202 bits (515), Expect = 4e-63
Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 7/235 (2%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWN-----VAGVAYR 111
+A G+ V V ++V A+ L IL L R H + G + VA
Sbjct: 103 SAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASG 162
Query: 112 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML 171
A + G+T+G +G GR+G+ + R K F N+L++D + +E+ G + L +L
Sbjct: 163 AARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP-YLSDGVERALGLQRVSTLQDLL 221
Query: 172 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 231
D V ++ L E + + + +M++G +VN ARG ++D +A+ A G I G
Sbjct: 222 FHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGA 281
Query: 232 SGDVWNPQP-APKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
+ DV +P + P + PN TPH + + A + + R G
Sbjct: 282 ALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITGR 336
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 198 bits (505), Expect = 5e-62
Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 4/228 (1%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
AA G+ V ++ SVAE + + + R ++ G W +LE
Sbjct: 84 AAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKK--EAMGIELE 141
Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
GKT+G +G GRIG + + N+L +D + + KE KF DL+T+L + D+
Sbjct: 142 GKTIGIIGFGRIGYQVAKIANALGMNILLYDPY-PNEERAKEVNGKFV-DLETLLKESDV 199
Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
V ++ PL E T + +++R+ MKK +++N +RG ++DT A+V A G IAG DV+
Sbjct: 200 VTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVF 259
Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKG 284
+P PKDHP N +TPH+ +T++AQ R V + + + KG
Sbjct: 260 EEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKILKG 307
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 195 bits (497), Expect = 1e-60
Identities = 75/236 (31%), Positives = 120/236 (50%), Gaps = 7/236 (2%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWN----VAGVAYRA 112
A G+ V +V+G +VAE + I+ L+R + GEW + R
Sbjct: 82 EATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRI 141
Query: 113 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP 172
L GK VG +G G IGK + +RL PF L Y R +EKE A++ D+D +L
Sbjct: 142 ESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSR-HRKVNVEKELKARYM-DIDELLE 199
Query: 173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS 232
K DIV++ PLT T + +++R+ K++ G +VN RGA++D +AV +A G + GY+
Sbjct: 200 KSDIVILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGALVDEKAVTEAIKQGKLKGYA 258
Query: 233 GDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
DV+ +P + ++Y +TPH +G ++AQ + L + +GE
Sbjct: 259 TDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEVPE 314
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 194 bits (494), Expect = 5e-60
Identities = 56/239 (23%), Positives = 98/239 (41%), Gaps = 7/239 (2%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWN-----VAGVAYR 111
A G+ A G+ + ++ L IL + R +G+ +
Sbjct: 98 ALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKS 157
Query: 112 AYDLEGKTVGTVGCGRIGKLLLQR-LKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM 170
A++ G +G VG G I K + ++ + L+Y+D D + EK GA+ + L+ +
Sbjct: 158 AHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEEL 217
Query: 171 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG 230
+ D V V+ P + T + D+ A MK G IVN ARG ++ A++ A SG +
Sbjct: 218 ARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLS 277
Query: 231 YSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPV 289
DV +P M + +T H+ G I+ + +DR+ +
Sbjct: 278 AGLDVHEFEPQV-SKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDRFLLQGKPLL 335
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 192 bits (491), Expect = 8e-60
Identities = 64/233 (27%), Positives = 106/233 (45%), Gaps = 2/233 (0%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWN-VAGVAYRAYDL 115
A A G+ V V+ AE ++ +L R G + + W + L
Sbjct: 85 ACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKL 144
Query: 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCD 175
+ KT+G G G IG+ L +R + F+ ++ Y D + E A F + LD++L
Sbjct: 145 DNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQ 204
Query: 176 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 235
+N P T +TR F+K I + +G ++VN ARG ++D + VV A +G +A DV
Sbjct: 205 FFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDV 264
Query: 236 WNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
+ +P + + +PN + PH+ A+ A D++D F G D
Sbjct: 265 FAGEP-NINEGYYDLPNTFLFPHIGSAATQAREDMAHQANDLIDALFGGADMS 316
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 192 bits (491), Expect = 1e-59
Identities = 77/237 (32%), Positives = 123/237 (51%), Gaps = 8/237 (3%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRA---- 112
A G+ V + A+ +L R+ + G V SGEW GVA+
Sbjct: 85 EATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFL 144
Query: 113 -YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML 171
YD+ GKT+G +G GRIG+ + +R K FN +LY+ R ++E+E A+F+ L+ +L
Sbjct: 145 GYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSR-TRKEEVERELNAEFK-PLEDLL 202
Query: 172 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 231
+ D VV+ PLT +T + +++R+ MKK +++N ARG ++DT A+V A G IAG
Sbjct: 203 RESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGA 262
Query: 232 SGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
DV+ +P + + N +TPH+ + A+ A V L + +GE P
Sbjct: 263 GLDVFEEEPYY-NEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRGEIPP 318
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 192 bits (489), Expect = 2e-59
Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 5/235 (2%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
A AAG+ VA +G + +++E L +L +VR + + L
Sbjct: 79 ALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPMTTS--TLT 136
Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
G+ + G G+IG+ L + +++ + P F L +
Sbjct: 137 GQQLLIYGTGQIGQSLAAKASALGMHVIGVNT-TGHPADHFHETVAFT-ATADALATANF 194
Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
+V PLT T +F + + K+ +++N RG +DT A++ A ++ + DV
Sbjct: 195 IVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVT 254
Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQN 291
P+P P DHP + +TPH+SG + ++ K V+N
Sbjct: 255 EPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFVKDGT-LVRN 308
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 190 bits (484), Expect = 1e-58
Identities = 70/235 (29%), Positives = 112/235 (47%), Gaps = 7/235 (2%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
AA G+ V N +S AE I+ L R + G+W + +L
Sbjct: 107 AATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERK--KFMGTELN 164
Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
GKT+G +G GRIG+ + R++ F + +D + + P++ G + L+ + P CD
Sbjct: 165 GKTLGILGLGRIGREVATRMQSFGMKTIGYDPI-ISPEVSASFGVQQL-PLEEIWPLCDF 222
Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
+ V+TPL T G+ + + A+ KKGV +VN ARG I+D A++ A SG AG + DV+
Sbjct: 223 ITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVF 282
Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQN 291
+P P+D N PH+ +T +AQ R + KG+ +
Sbjct: 283 TEEP-PRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGK--SLTG 334
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 188 bits (480), Expect = 2e-58
Identities = 50/231 (21%), Positives = 94/231 (40%), Gaps = 8/231 (3%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
A + V G++ S E + ++ R SG + +L
Sbjct: 86 EAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFK----KIEGLELA 141
Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
GKT+G VG GRIG + +L +D + + ++ AK L+ +L D+
Sbjct: 142 GKTIGIVGFGRIGTKVGIIANAMGMKVLAYDIL-DIREKAEKINAKAV-SLEELLKNSDV 199
Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
+ ++ +++ + + D + MK V+IVN +R ++ +A++D G + Y+ DV+
Sbjct: 200 ISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVF 259
Query: 237 NPQPAPKDH--PWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
+P ++ +T H+ T +AQ R A L K
Sbjct: 260 WNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLLNAMKEL 310
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 189 bits (483), Expect = 3e-58
Identities = 59/275 (21%), Positives = 111/275 (40%), Gaps = 11/275 (4%)
Query: 20 LRSSSRFSRHYASSGSK-KIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAE 78
+R +R +R K KI+ + + A + + A G+ V E + V+ AE
Sbjct: 55 IRERTRVTRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLE-GKGSPVAPAE 113
Query: 79 DELMRILILVRNFLPGHHQVISGEWNVAGVAYRAY--------DLEGKTVGTVGCGRIGK 130
++ R + G W +G+ L+G+T+G G G+IG+
Sbjct: 114 LTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQ 173
Query: 131 LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 190
L+ + F N+L R + + + G E D + + D++ V+ L ++TR +
Sbjct: 174 LVAGYGRAFGMNVLVWGR-ENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSI 232
Query: 191 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYM 250
+ +MK L VN +R +++ +V A + G + DV+ +P + H M
Sbjct: 233 ITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRM 292
Query: 251 PNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
N TPH+ ++ Y + +G
Sbjct: 293 ENCICTPHIGYVERESYEMYFGIAFQNILDILQGN 327
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 183 bits (468), Expect = 3e-56
Identities = 63/253 (24%), Positives = 110/253 (43%), Gaps = 19/253 (7%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
G+ V + + SVAE IL LV+ +V ++ A +L
Sbjct: 82 YCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDS-EILARELN 140
Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
T+G +G GRIG + F +L +D VK L+++ G + LD +L + D+
Sbjct: 141 RLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVK-REDLKEK-GCVYT-SLDELLKESDV 197
Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV- 235
+ ++ P T++T M +++RI+ MK GV ++N ARG ++DT A+ A G +G DV
Sbjct: 198 ISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVF 257
Query: 236 ----------WNPQPAPKDHPWRY----MPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRY 281
+ A + N +TPH++ T + R ++ +
Sbjct: 258 EDEEILILKKYTEGKATDKNLKILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAF 317
Query: 282 FKGEDFPVQNYIV 294
KG+ ++ V
Sbjct: 318 VKGDLEQIKGNFV 330
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 183 bits (468), Expect = 3e-56
Identities = 62/254 (24%), Positives = 110/254 (43%), Gaps = 21/254 (8%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
A G + V + ++AE ++ ++R +V + A ++
Sbjct: 88 KAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAP--TIGREVR 145
Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
+ VG VG G IG++ +Q ++ F ++ +D + +P+LEK+ G + LD + + D+
Sbjct: 146 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR-NPELEKK-GYYVD-SLDDLYKQADV 202
Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
+ ++ P M + + IAKMK+ V+IVN +RG ++DT AV+ SG I GY+ DV+
Sbjct: 203 ISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVY 262
Query: 237 -------------NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFK 283
P + PN +TP + T A D +
Sbjct: 263 EGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVE 322
Query: 284 GEDFPVQNYIVKAG 297
G++ VK G
Sbjct: 323 GKEAE---TPVKVG 333
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 181 bits (463), Expect = 1e-55
Identities = 63/233 (27%), Positives = 102/233 (43%), Gaps = 2/233 (0%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNV-AGVAYRAYDL 115
G+ V + AE + +L R +V +G W + Y L
Sbjct: 94 EIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGL 153
Query: 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCD 175
TVG +G GRIG+ + +RLKPF + + P+ E A+F + + D
Sbjct: 154 TQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV-STPELAAQSD 212
Query: 176 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 235
+VV LT T G+ +KD KMK+ + +N +RG +++ + A +SG IA DV
Sbjct: 213 FIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDV 272
Query: 236 WNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
+P+P P +HP + N + PH+ T + + + L +GE P
Sbjct: 273 TSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMP 325
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 180 bits (460), Expect = 3e-55
Identities = 73/233 (31%), Positives = 117/233 (50%), Gaps = 9/233 (3%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNV-AGVAYRAYDL 115
AA G+ V G + A+ L +L + R + G G W DL
Sbjct: 83 AARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDL 142
Query: 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCD 175
+G T+G VG GRIG+ + +R F ++YH R K F L+ +L + D
Sbjct: 143 QGLTLGLVGMGRIGQAVAKRALAFGMRVVYHART------PKPLPYPFL-SLEELLKEAD 195
Query: 176 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 235
+V ++TPLT +T + +++R+ MK+G +++N ARGA++DT+A+V+A GH+ G DV
Sbjct: 196 VVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEAL-RGHLFGAGLDV 254
Query: 236 WNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
+P+P P HP +PN +TPH+ + R A + L +G + P
Sbjct: 255 TDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREPP 307
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 186 bits (474), Expect = 3e-55
Identities = 77/238 (32%), Positives = 119/238 (50%), Gaps = 5/238 (2%)
Query: 51 MNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAY 110
N + AA A G+ V SN+ S AE L +L R + W + ++
Sbjct: 78 DNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRS--SF 135
Query: 111 RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM 170
++ GKTVG VG GRIG+L+ QR+ F ++ +D + P + G + LD +
Sbjct: 136 SGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPY-VSPARAAQLGIELL-SLDDL 193
Query: 171 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG 230
L + D + V+ P T +T G+ DK+ +AK K GV+IVN ARG ++D A+ DA + GH+
Sbjct: 194 LARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRA 253
Query: 231 YSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
DV+ +P D P + +TPH+ +T +AQ R V + + GE P
Sbjct: 254 AGLDVFATEP-CTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVP 310
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 183 bits (466), Expect = 3e-55
Identities = 67/233 (28%), Positives = 109/233 (46%), Gaps = 10/233 (4%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
AAA G+ V SN SVAE + +L+L+R + + G N +A +++
Sbjct: 87 AAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGN--KLAAGSFEAR 144
Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
GK +G +G G IG L + + ++D +L + + L +L D+
Sbjct: 145 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIE---NKLPLGNATQVQ-HLSDLLNMSDV 200
Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
V ++ P T+ M I+ MK G L++N +RG ++D A+ DA +S H+AG + DV+
Sbjct: 201 VSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVF 260
Query: 237 NPQPA----PKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
+PA P P N +TPH+ G+T +AQ V L +Y
Sbjct: 261 PTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNG 313
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 180 bits (460), Expect = 4e-55
Identities = 54/245 (22%), Positives = 103/245 (42%), Gaps = 18/245 (7%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
A G+ ++ V + ++AE L L L+RN Q+ +G++ AG + +L
Sbjct: 86 AMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAG-TFIGKELG 144
Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
+TVG +G G IG++ ++ K F ++ +D P + L+ + + D+
Sbjct: 145 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPY---PMKGDHPDFDYV-SLEDLFKQSDV 200
Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
+ ++ P E+ + ++ MK G +++N AR ++DTQA++ SG +AG D +
Sbjct: 201 IDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTY 260
Query: 237 -------------NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFK 283
P MPN ++PH++ T A L +
Sbjct: 261 EYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLT 320
Query: 284 GEDFP 288
+
Sbjct: 321 KGETS 325
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 182 bits (463), Expect = 1e-54
Identities = 69/233 (29%), Positives = 109/233 (46%), Gaps = 10/233 (4%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
AA G+ V SN SVAE + I++L+R P +G W A + ++
Sbjct: 98 AARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWE--KTAIGSREVR 155
Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
GKT+G VG G IG + + + Y+D K LD +L D+
Sbjct: 156 GKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQYG----NVKPAASLDELLKTSDV 211
Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
V ++ P ++ T + + ++ KMKKG ++NNARG+ +D +A+ GH+AG + DV+
Sbjct: 212 VSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVF 271
Query: 237 NPQPAPK----DHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
+PA P + + N +TPH+ G+T +AQ R V L Y
Sbjct: 272 PVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERIGTEVTRKLVEYSDVG 324
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 178 bits (455), Expect = 2e-54
Identities = 59/246 (23%), Positives = 101/246 (41%), Gaps = 19/246 (7%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
A G +A V + ++AE + + ++L+R+ + + V + ++
Sbjct: 87 YAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDA-FMFSKEVR 145
Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
TVG VG GRIG++ Q ++ D E LD +L K DI
Sbjct: 146 NCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVF---EIKGIEDYCTQV-SLDEVLEKSDI 201
Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV- 235
+ ++ P ++ + +D + KMK G ++VN ARG ++DT+AV++A SG + GY DV
Sbjct: 202 ITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVL 261
Query: 236 ----------WNPQPAPKDHPWRYM---PNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYF 282
Q + + P +TPH+ T +A L
Sbjct: 262 DGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLA 321
Query: 283 KGEDFP 288
+ D P
Sbjct: 322 ETGDCP 327
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 170 bits (432), Expect = 9e-51
Identities = 59/230 (25%), Positives = 108/230 (46%), Gaps = 4/230 (1%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNV-AGVAYRAYDL 115
AA + G+ V + AE ++ +L R V SG W L
Sbjct: 112 AARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGL 171
Query: 116 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCD 175
G+ +G G GRIG+ + R + F + YH+R ++ E GA + + LD++L D
Sbjct: 172 TGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSH--ALEEGAIYHDTLDSLLGASD 229
Query: 176 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 235
I ++ P + +G D DRIAK+ +G +++N +RG +++ A+++A S H+ DV
Sbjct: 230 IFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDV 289
Query: 236 WNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
+ +P D +R + N +TPH+ T + + + ++ + +
Sbjct: 290 FANEP-AIDPRYRSLDNIFLTPHIGSATHETRDAMGWLLIQGIEALNQSD 338
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 168 bits (428), Expect = 8e-50
Identities = 51/233 (21%), Positives = 94/233 (40%), Gaps = 31/233 (13%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
AG+ + G N ++V E +L+L + L
Sbjct: 79 WLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAER--------------------DGFSLR 118
Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
+T+G VG G +G L RL+ L D P+ + F LD ++ + D+
Sbjct: 119 DRTIGIVGVGNVGSRLQTRLEALGIRTLLCDP----PRAARGDEGDFR-TLDELVQEADV 173
Query: 177 VVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS 232
+ +TPL + KT + D+ I ++K G +++N RG ++D A++ ++G
Sbjct: 174 LTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVV 233
Query: 233 GDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
DVW +P + + T H++G T++ + R V + + E
Sbjct: 234 LDVWEGEP-DLNVALLEAVDIG-TSHIAGYTLEGKARGTTQVFEAYSAFIGRE 284
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 166 bits (423), Expect = 2e-49
Identities = 55/232 (23%), Positives = 97/232 (41%), Gaps = 6/232 (2%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
A + V G VA+ + +L ++R G V G W + +
Sbjct: 111 RARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPK 170
Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
GK +G +G G+IG+ L R + F ++ Y +R + + + D+
Sbjct: 171 GKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLS-----GVDWIAHQSPVDLARDSDV 225
Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
+ V + T+ + D + + ++VN ARG ++D A+++A SG IAG DV+
Sbjct: 226 LAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVF 285
Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
+PA + PN + PH T++ ++ V L +F GE P
Sbjct: 286 VNEPAI-RSEFHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHFAGEKAP 336
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 166 bits (423), Expect = 4e-49
Identities = 57/233 (24%), Positives = 99/233 (42%), Gaps = 31/233 (13%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
A AG+ + G N V + V+ +A R DL
Sbjct: 76 YFAEAGIAWSSAPGCNARGVVD------------------YVLGCLLAMA--EVRGADLA 115
Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
+T G VG G++G L++ L+ +L D P+ +E +F L+ +L + D+
Sbjct: 116 ERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDP----PRQAREPDGEFV-SLERLLAEADV 170
Query: 177 VVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS 232
+ ++TPL TR + D+ R+A ++ G +VN +RGA++D QA+ G +
Sbjct: 171 ISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVA 230
Query: 233 GDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE 285
DVW +P P TPH++G +++ +LR A + +
Sbjct: 231 LDVWEGEPQA--DPELAARCLIATPHIAGYSLEGKLRGTAQIYQAYCAWRGIA 281
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 164 bits (418), Expect = 8e-49
Identities = 57/232 (24%), Positives = 94/232 (40%), Gaps = 7/232 (3%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLE 116
G+ V VA+ + IL ++R V G W G
Sbjct: 105 KCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWK-FGDFKLTTKFS 163
Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI 176
GK VG +G GRIG + +R + F+C + Y R K T + + + DI
Sbjct: 164 GKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKP-----NTNYTYYGSVVELASNSDI 218
Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
+VV PLT +T + +++ I + +++N RG +D +V A G + G DV+
Sbjct: 219 LVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVF 278
Query: 237 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
+P + N + PHV T++ + A V L+ +F G+
Sbjct: 279 EREPEV-PEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPLL 329
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 157 bits (400), Expect = 2e-46
Identities = 52/235 (22%), Positives = 90/235 (38%), Gaps = 10/235 (4%)
Query: 55 FLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYD 114
A + V G ++E +L L+R Q W ++
Sbjct: 82 LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQ----SHPYQG 137
Query: 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR-VKMDPQLEKETGAKFEEDLDTMLPK 173
L+G+T+ +G G IG+ + K F +L R + ++ L+ ML +
Sbjct: 138 LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQ---LPALNKMLAQ 194
Query: 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 233
D++V P T +T +F R K G ++ N RG ++ ++ A +G +
Sbjct: 195 ADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVL 254
Query: 234 DVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
DV+ +P P D P PN +TPH S + + A R+ G+
Sbjct: 255 DVFEQEPLPADSPLWGQPNLIITPHNSAYSFPDDV--AQIFVRNYIRFIDGQPLD 307
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 152 bits (386), Expect = 3e-44
Identities = 51/216 (23%), Positives = 93/216 (43%), Gaps = 10/216 (4%)
Query: 74 VSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLL 133
+ + E + ++L R F W Y E +VG +G G +G +
Sbjct: 100 LQMQEYAVSQVLHWFRRFDDYQALKNQALWK----PLPEYTREEFSVGIMGAGVLGAKVA 155
Query: 134 QRLKPFNCNLLYHDR-VKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 192
+ L+ + L R K P +E G E+L L + +++ P T +T G+ +
Sbjct: 156 ESLQAWGFPLRCWSRSRKSWPGVESYVG---REELRAFLNQTRVLINLLPNTAQTVGIIN 212
Query: 193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN 252
+ + ++ G ++N ARG + ++ A SG + G DV++ +P P++ P P
Sbjct: 213 SELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPR 272
Query: 253 QAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFP 288
AMTPH++ T A+ + + + KGE
Sbjct: 273 VAMTPHIAAVTRPAEA--IDYISRTITQLEKGEPVT 306
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 79.2 bits (195), Expect = 3e-17
Identities = 23/156 (14%), Positives = 53/156 (33%), Gaps = 12/156 (7%)
Query: 86 ILVRNFLPGHHQVISGEWNVAGVAYRAYD--LEGKTVGTVGCGRIGKLLLQRLKPFNCNL 143
++ R+ + ++ + + E + +A + D + G V +G GR+G + ++ +
Sbjct: 123 LMERDDIAIYNSIPTAEGTIM-MAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKV 181
Query: 144 LYHDRVKMDPQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 201
R E G + L D+ + P + + +A+M
Sbjct: 182 KVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPAL-----VVTANVLAEMPS 236
Query: 202 GVLIVNNARG--AIMDTQAVVDACSSGHIAGYSGDV 235
+++ A A + + G G V
Sbjct: 237 HTFVIDLASKPGGTDFRYAEKRGIKALLVPGLPGIV 272
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 5e-04
Identities = 27/128 (21%), Positives = 43/128 (33%), Gaps = 27/128 (21%)
Query: 90 NFLPGHH---QVISGEWNVAGVAYRAYD-LEGK--TVGTVGCGRIGKL-LLQRLKPFNCN 142
+ + GHH + + + + LE K T L LQ+LK
Sbjct: 475 SHI-GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK----- 528
Query: 143 LLYHDRV-KMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 201
Y + DP+ E+ + LPK + ++ + T D RIA M +
Sbjct: 529 -FYKPYICDNDPKYER-----LVNAILDFLPKIEENLICSKYT-------DLLRIALMAE 575
Query: 202 GVLIVNNA 209
I A
Sbjct: 576 DEAIFEEA 583
Score = 35.2 bits (80), Expect = 0.024
Identities = 32/234 (13%), Positives = 73/234 (31%), Gaps = 82/234 (35%)
Query: 36 KKIVGVFYKGNEYASMNPN--FLAAA-------AAGLTVA-----EVTGSNVVSVAEDEL 81
+++V F + + N FL + + +T + ++ A+ +
Sbjct: 76 EEMVQKFVEE----VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 82 MRI--LILVRNFL----PGHHQVI-----SGEWNVAGVAYRAYDLEGKTVG-----TVGC 125
R+ + +R L P + +I SG+ VA +Y ++ K +
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 126 GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE 185
+ +L+ L+ LLY +DP D + + + +++ E
Sbjct: 192 CNSPETVLEMLQ----KLLYQ----IDPNWTSR------SDHSSNIK----LRIHSIQAE 233
Query: 186 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ 239
R + K + L+ ++ +V N +
Sbjct: 234 LRRLLKSKPY-----ENCLL-------VLL------------------NVQNAK 257
Score = 29.1 bits (64), Expect = 2.5
Identities = 36/288 (12%), Positives = 85/288 (29%), Gaps = 83/288 (28%)
Query: 48 YASMNPNFLAAAAAGLTVAEVTGS--NVVSVAE-DELM----------RILILVRN---- 90
Y + F A +V +++S E D ++ R+ + +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 91 ----FLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH 146
F+ + I+ ++ ++ + T + QR + +N N ++
Sbjct: 78 MVQKFVEEVLR-INYKFLMSPIKTEQRQPSMMTR---------MYIEQRDRLYNDNQVF- 126
Query: 147 DRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLI 205
K + +L+ K + L + P ++++ G+ K +
Sbjct: 127 --AKYNVSRLQPYL--KLRQALLELRPAKNVLID---------GV------LGSGKTWV- 166
Query: 206 VNNARGAIMDTQAVVDACSSGHI-AGYSGDV-W---NPQPAPKD--HPWRYMPNQAMTPH 258
+D C S + + W +P+ + + Q
Sbjct: 167 -------------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 259 VSGTTIDAQLRYAAG-VKDMLDRYFKGEDFP--------VQN-YIVKA 296
S + + ++ ++ L R K + + VQN A
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein
structure initiativ midwest center for structural
genomics; 2.50A {Bordetella bronchiseptica}
Length = 387
Score = 39.8 bits (93), Expect = 7e-04
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 18/75 (24%)
Query: 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK----MDPQLEK------ETGAKFEEDLDT 169
G G G G +L+ + +H + DP + E G L
Sbjct: 5 FGICGLGFAGSVLMAPA------MRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAE 58
Query: 170 ML--PKCDIVVVNTP 182
M+ + D V + +P
Sbjct: 59 MMQHVQMDAVYIASP 73
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.001
Identities = 20/134 (14%), Positives = 46/134 (34%), Gaps = 33/134 (24%)
Query: 2 AMKRVASSAINAFASSGFLRSSSRFSRH----Y----ASSGSK------KIVGVFYKGNE 47
A+ + +A S G + + + F+ H Y + + ++V FY+G
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV--FYRGMT 1792
Query: 48 YASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILI---------LVR--NF-LPGH 95
P + + + V + E ++ ++ LV N+ +
Sbjct: 1793 MQVAVPRD-ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEN- 1850
Query: 96 HQ-VISGEWNVAGV 108
Q V +G+ + +
Sbjct: 1851 QQYVAAGD--LRAL 1862
Score = 34.3 bits (78), Expect = 0.058
Identities = 49/268 (18%), Positives = 82/268 (30%), Gaps = 85/268 (31%)
Query: 6 VASSAINAFASSG--FLRSSSRFSRHYASSGSKKIVGVFYKGNE------YASMNPNFLA 57
V + AI A S F S + I +F+ G S+ P+ L
Sbjct: 278 VTAVAI-AETDSWESFFVSVRKA-----------ITVLFFIGVRCYEAYPNTSLPPSILE 325
Query: 58 AAAAGLTVAEVTGS---NVVSVAEDELMRILILVRNFLPGHHQV-IS---GEWN--VAGV 108
+ L E S ++ ++ ++++ + + LP QV IS G N V+G
Sbjct: 326 DS---LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG- 381
Query: 109 AYRAYDLEG------KTVGTVGCGRIGKLLLQRLK------------PFNCNLL--YHDR 148
L G K G + +R K PF+ +LL D
Sbjct: 382 --PPQSLYGLNLTLRKAKAPSGLDQSRIPFSER-KLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 149 VKMD---------------PQLEKETGA---KFEEDLDTMLPKCDIVV---VNTPLTEKT 187
+ D P + G+ + + D ++ V T +
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI--VDCIIRLPVKWETTTQF 496
Query: 188 RGM----FDKDRIAKMKKGVLIVNNARG 211
+ F + + GVL N G
Sbjct: 497 KATHILDFGPGGASGL--GVLTHRNKDG 522
Score = 33.9 bits (77), Expect = 0.070
Identities = 60/392 (15%), Positives = 107/392 (27%), Gaps = 143/392 (36%)
Query: 4 KRVASSAINAFASSGF---LRSSSRFSRHYASSGSKKIVGVF----------------YK 44
K + + I A + +S+S R G+ ++V +F Y+
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRA-VGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 45 GNEYASMNPNFLAAAAAGL-----TVAEVT-----GSNVVSVAEDE--------LMRI-- 84
Y + + + +A L T + G N++ E+ L+ I
Sbjct: 179 --TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 85 ---LILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCG--------------- 126
LI V H+ V + + G + +L G G
Sbjct: 237 SCPLIGVIQL--AHYVVTA---KLLG--FTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 127 ----RIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVV 178
+ + L F C Y + P + +++ E ML +
Sbjct: 290 ESFFVSVRKAITVL--FFIGVRCYEAY-PNTSLPPSILEDSLENNEGVPSPML-----SI 341
Query: 179 VNTPLT------EKTRGMFDKDR---IAKMKKGVLIVNNARGAIMDTQAVVDACSSGH-- 227
N KT + I+ +VN A+ VV SG
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEIS-------LVNGAK------NLVV----SGPPQ 384
Query: 228 -----------IAGYSGDVWNPQPAPKDHP---WRYMPNQAMTP-HVSGTTIDAQLRYAA 272
SG + P + R++P + P H
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS--PFHSH---------LLV 433
Query: 273 GVKDMLDRYFKGEDFPVQNYIVKAGELA-PQY 303
D+++ +D N A ++ P Y
Sbjct: 434 PASDLIN-----KDLVKNNVSFNAKDIQIPVY 460
Score = 28.9 bits (64), Expect = 3.0
Identities = 34/161 (21%), Positives = 48/161 (29%), Gaps = 47/161 (29%)
Query: 16 SSGFLRSSSRFSRHYASSGSKKIVGVFYKGNEYASMNPNFLAAAAAGLTV-AEVTGSNVV 74
S+ FL +S F H S I K N A + V GS++
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNV-------SFNAKDIQIPVYDTFDGSDLR 469
Query: 75 SVAEDELMRI--LILVRNFLPGHHQVISGEWNVAGVAYRA---YDLEGKTVGTVGCGRIG 129
++ RI I+ LP W ++A D G G +G
Sbjct: 470 VLSGSISERIVDCIIR---LPVK-------WETT-TQFKATHILDF-----GPGGASGLG 513
Query: 130 KLLLQRLKPFNCNLLYHD----RV----KMDPQLEKETGAK 162
L R K D RV +D + + G K
Sbjct: 514 V-LTHRNK---------DGTGVRVIVAGTLDINPDDDYGFK 544
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein,
rossman fold, putative dehydrogenase, ST genomics; 1.70A
{Desulfitobacterium hafniense dcb-2}
Length = 354
Score = 38.1 bits (89), Expect = 0.002
Identities = 9/75 (12%), Positives = 25/75 (33%), Gaps = 19/75 (25%)
Query: 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM----DPQLEK------ETGAKFEEDLDT 169
V +G GR ++ +++K+ +K + ++
Sbjct: 8 VAAIGLGRWAYVMAD-------AYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEA 60
Query: 170 ML--PKCDIVVVNTP 182
+L ++V++ P
Sbjct: 61 LLAREDVEMVIITVP 75
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding
oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium
violaceum} PDB: 3q2k_A*
Length = 354
Score = 38.1 bits (89), Expect = 0.002
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 12/72 (16%)
Query: 120 VGTVGCGRIGKLLLQRLK--PFNCNL-----LYHDRVKMDPQLEKETGAKFEEDLDTML- 171
VGCGRI L+ L + +K + TGA+ L ML
Sbjct: 16 FALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALK---AAVERTGARGHASLTDMLA 72
Query: 172 -PKCDIVVVNTP 182
DIV++ TP
Sbjct: 73 QTDADIVILTTP 84
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 35.9 bits (84), Expect = 0.005
Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 14/92 (15%)
Query: 100 SGEWNVAGVAYRAYDL----EGKTVGTVGCGRIGKLLLQRLKPFNCNLLY----HDRVKM 151
S + YD+ G + VG G + + + D V+
Sbjct: 1 SNA-GKVSIPSIVYDIVRKNGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVR- 58
Query: 152 DPQLEKETGAKFE--EDLDTMLPKCDIVVVNT 181
++ ++ D+D+++ D+++ T
Sbjct: 59 --AFAEKYEYEYVLINDIDSLIKNNDVIITAT 88
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain;
structural genomics, center for structural genomics of
infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium
difficile}
Length = 308
Score = 36.5 bits (85), Expect = 0.007
Identities = 10/73 (13%), Positives = 27/73 (36%), Gaps = 16/73 (21%)
Query: 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK----MDP------QLEKETGAKFEEDLDT 169
+G +G G I + L +R + P ++ + + +++
Sbjct: 9 MGMIGLGSIAQKAYLP------ILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIES 62
Query: 170 MLPKCDIVVVNTP 182
+ KCD + +++
Sbjct: 63 LAKKCDCIFLHSS 75
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural
genomics, NYSGXRC, PSI, protein structure initiative;
2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Length = 319
Score = 35.8 bits (83), Expect = 0.012
Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 16/73 (21%)
Query: 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK----MDPQLEK------ETGAKFEEDLDT 169
+G VG G I + + L P K + + L +
Sbjct: 8 IGVVGLGGIAQKAWLPV------LAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSS 61
Query: 170 MLPKCDIVVVNTP 182
+ CD V V++
Sbjct: 62 LAASCDAVFVHSS 74
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom
protein structure initiative, PSI, NEW YORK structural
GENO research consortium; HET: NAD; 1.95A {Listeria
innocua}
Length = 359
Score = 35.8 bits (83), Expect = 0.014
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 18/74 (24%)
Query: 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM----DPQLEK-----ETGAKFEEDLDTM 170
+ VG G +G + D +++ D EK + G K E + +
Sbjct: 8 LVIVGYGGMGSYHVT-------LASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAV 60
Query: 171 L--PKCDIVVVNTP 182
L K D V++ TP
Sbjct: 61 LADEKVDAVLIATP 74
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI
II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase,
tetramer; 2.30A {Corynebacterium glutamicum}
Length = 344
Score = 35.4 bits (82), Expect = 0.018
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 19/75 (25%)
Query: 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK----MDPQLE------KETGAKFEEDLDT 169
+ G GRIG + N+ + ++ DP +E + GA+ D
Sbjct: 7 IALFGAGRIGHVHAA-------NIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDE 59
Query: 170 ML--PKCDIVVVNTP 182
+ D +V+ +P
Sbjct: 60 VFARDDIDGIVIGSP 74
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.14A {Thermotoga maritima}
Length = 337
Score = 34.6 bits (80), Expect = 0.027
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 11/73 (15%)
Query: 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK--------ETGAKFEEDLDTML 171
+ +G + L+ L C++ + L K K + ML
Sbjct: 5 ICVIGSSGHFRYALEGLDE-ECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEML 63
Query: 172 --PKCDIVVVNTP 182
K DI+V+NT
Sbjct: 64 EKEKPDILVINTV 76
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural
genomics, protein structure initiative; 2.40A
{Methanosarcina mazei GO1}
Length = 478
Score = 34.9 bits (81), Expect = 0.031
Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 132 LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 191
+++ HD P + G + ++L+ ++ D +VV + +
Sbjct: 378 YRDLCLKAGASVMVHD-----PYVVNYPGVEISDNLEEVVRNADAIVVLAGHSAYSSLKA 432
Query: 192 DKDRIAKMKKGVLIV 206
D + K +I+
Sbjct: 433 DWAKKVSAKANPVII 447
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Escherichia coli k-12}
Length = 345
Score = 34.2 bits (79), Expect = 0.039
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 120 VGTVGCGRIGK-----LLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML--P 172
+G G+ +L R ++ ++ K + Q + F DLD +L P
Sbjct: 5 CAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDP 64
Query: 173 KCDIVVVNTP 182
+VVV T
Sbjct: 65 DVKLVVVCTH 74
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.30A {Enterococcus faecalis} PDB:
3fd8_A* 3hnp_A
Length = 349
Score = 33.8 bits (78), Expect = 0.055
Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 19/76 (25%)
Query: 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM----DPQLEKET-------GAKFEEDLD 168
+G +G G+ ++ + +++ D + ++ G F DL+
Sbjct: 5 MGFIGFGKSANRYHLPY------VMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLN 58
Query: 169 TML--PKCDIVVVNTP 182
+L P+ +++ + TP
Sbjct: 59 ELLTDPEIELITICTP 74
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC,
structur genomics, protein structure initiative; 1.93A
{Bacteroides fragilis nctc 9343}
Length = 362
Score = 33.5 bits (77), Expect = 0.075
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 120 VGTVGCGRIGKL----LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML--PK 173
G G G++ + F + +R K + E+ A + P+
Sbjct: 8 TGLAAFGMSGQVFHAPFISTNPHFELYKIV-ERSK-ELSKERYPQASIVRSFKELTEDPE 65
Query: 174 CDIVVVNTP 182
D++VVNTP
Sbjct: 66 IDLIVVNTP 74
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis;
HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP:
a.151.1.1 c.2.1.7 d.58.39.1
Length = 404
Score = 33.3 bits (77), Expect = 0.076
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLY-----HDRVKMDPQLEKETGAKFE--ED 166
L KTV VG G +GK + + L + ++R +L ++ G + ++
Sbjct: 164 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAV---ELARDLGGEAVRFDE 220
Query: 167 LDTMLPKCDIVVVNT 181
L L + D+VV T
Sbjct: 221 LVDHLARSDVVVSAT 235
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint
center for structural genomics, JCSG; HET: MSE; 1.25A
{Pectobacterium atrosepticum SCRI1043}
Length = 336
Score = 33.1 bits (76), Expect = 0.096
Identities = 7/69 (10%), Positives = 15/69 (21%), Gaps = 6/69 (8%)
Query: 120 VGTVGCGRIGKL-LLQRLKPFNCNLLY---HDRVKMDPQLEKETGAKFEEDLDTML--PK 173
+G + Q+L L D F + ++
Sbjct: 7 FAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDAS 66
Query: 174 CDIVVVNTP 182
D++
Sbjct: 67 IDLIACAVI 75
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding
rossmann fold, structural genomics; HET: MSE PG4 PGE;
1.85A {Magnetospirillum magnetotacticum}
Length = 315
Score = 32.7 bits (75), Expect = 0.12
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 17/73 (23%)
Query: 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM----DPQLEK----ETGAKFEEDLDTML 171
+ +G GR GK ++ + + + G E D +++
Sbjct: 13 LALIGAGRWGKNYIR-------TIAGLPGAALVRLASSNPDNLALVPPGCVIESDWRSVV 65
Query: 172 --PKCDIVVVNTP 182
P+ + V++ TP
Sbjct: 66 SAPEVEAVIIATP 78
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius}
SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Length = 299
Score = 32.5 bits (75), Expect = 0.12
Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 19/111 (17%)
Query: 114 DLEGKTVGTVG---CGRIGKLLLQRLKPFNCNLLY---HDRVKMDPQLEKETGAKFEE-- 165
++G +G R LL+ L F L+Y ++ ++ E +E
Sbjct: 146 TIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVE 205
Query: 166 DLDTMLPKCDIVVV---------NTPLTEKTRGMF--DKDRIAKMKKGVLI 205
+ ++ + D++ V + EK +G + D KMKK +I
Sbjct: 206 NPFEVINEVDVLYVTRIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSII 256
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment,
heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP:
c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Length = 294
Score = 32.5 bits (74), Expect = 0.12
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 16/72 (22%)
Query: 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM----DPQLEKETGAKFE---EDLDTML- 171
V VG GR G + L+ +L +E G+ E L+ L
Sbjct: 10 VVVVGVGRAGSVRLR-------DLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALR 62
Query: 172 -PKCDIVVVNTP 182
+ D+ + +
Sbjct: 63 SQEIDVAYICSE 74
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase;
HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB:
2ixb_A*
Length = 444
Score = 32.4 bits (73), Expect = 0.16
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 15/78 (19%)
Query: 120 VGTVGCGRIGKLLLQRLKPF-NCNL-----LYHDRVKMDPQLEKETGAK-------FEED 166
+ + G G+ ++ + + + V ++ K+ G K +D
Sbjct: 23 IAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDD 82
Query: 167 LDTML--PKCDIVVVNTP 182
ML D V V++P
Sbjct: 83 YKNMLKDKNIDAVFVSSP 100
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC,
11136F, structural genomics, protein structure
initiative; 2.04A {Klebsiella pneumoniae subsp}
Length = 364
Score = 32.3 bits (74), Expect = 0.19
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 120 VGTVGCGRIGKL----LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML--PK 173
+ +G G +GK L++ + N + R + + + + P
Sbjct: 10 IALIGYGFVGKTFHAPLIRSVPGLNLAFVA-SRDE-EKVKRDLPDVTVIASPEAAVQHPD 67
Query: 174 CDIVVVNTP 182
D+VV+ +P
Sbjct: 68 VDLVVIASP 76
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A
{Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A*
3plr_A*
Length = 432
Score = 32.2 bits (74), Expect = 0.20
Identities = 10/53 (18%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
Query: 152 DPQLEKET--GAKFEEDLDTMLPKCDIVVVNTP------LTEK--TRGMFDKD 194
+P ++++ ++ DL+ + D+++ N + +K TR +F D
Sbjct: 372 EPVMQEDEFFNSRVVRDLNAFKQEADVIISNRMAEELADVADKVYTRDLFGND 424
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein
structure initiative; HET: NAD; 2.30A {Chromobacterium
violaceum}
Length = 359
Score = 32.0 bits (73), Expect = 0.25
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 19/76 (25%)
Query: 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM----DPQLEK--ETGAKFE-----EDLD 168
VG VG G + L +LL +++ D LE+ +++
Sbjct: 8 VGLVGIGAQMQENLLP------SLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVP 61
Query: 169 TML--PKCDIVVVNTP 182
ML D VV+ P
Sbjct: 62 AMLNQVPLDAVVMAGP 77
>2o3l_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, unknown function; HET: MSE; 2.05A {Bacillus
cereus} SCOP: a.69.4.1
Length = 85
Score = 29.4 bits (66), Expect = 0.31
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 55 FLAAAAAGLTVAEVTGSNVVSVAEDELMR 83
F A AA G V ++TG +V S A DEL+
Sbjct: 50 FEAGAAEGRQVLDITGEDVASFA-DELVA 77
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative
oxidoreductase YVAA, oxidoredu PSI-2, protein structure
initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Length = 358
Score = 31.5 bits (72), Expect = 0.34
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Query: 120 VGTVGCGRIGKL----LLQRLKPFNCNLLYHDRVKMDPQL--EKETGAKFEEDLDTML-- 171
VG +G G G + LL L + + + A+ +L+ +
Sbjct: 8 VGILGYGLSGSVFHGPLLDVLD--EYQI--SKIMTSRTEEVKRDFPDAEVVHELEEITND 63
Query: 172 PKCDIVVVNTP 182
P ++V+V TP
Sbjct: 64 PAIELVIVTTP 74
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural
genomics, center FO structural genomics of infectious
diseases; HET: MSE; 2.75A {Yersinia pestis}
Length = 352
Score = 31.5 bits (72), Expect = 0.35
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 16/73 (21%)
Query: 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM----DPQLEK----ETGAKFEEDLDTML 171
VG +G G K L ++ +++ K D +
Sbjct: 10 VGLLGYGYASKTFHAPL------IMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLF 63
Query: 172 --PKCDIVVVNTP 182
P D++V+ TP
Sbjct: 64 NDPSIDLIVIPTP 76
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol
dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE;
1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A*
3nto_A* 3ntq_A* 3ntr_A*
Length = 344
Score = 31.1 bits (71), Expect = 0.37
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 20/77 (25%)
Query: 120 VGTVGCGRIGKL----LLQRLKPFNCNLLYHDRVKMDPQLEK--------ETGAKFEEDL 167
+G +G G IGK + +L ++ V D E + A +
Sbjct: 5 IGVIGTGAIGKEHINRITNKLS--GAEIVA---V-TDVNQEAAQKVVEQYQLNATVYPND 58
Query: 168 DTML--PKCDIVVVNTP 182
D++L D V+V +
Sbjct: 59 DSLLADENVDAVLVTSW 75
>2hh6_A BH3980 protein; 10176605, structural genomics, joint center for
STRU genomics, JCSG, protein structure initiative, PSI,
unknown; 2.04A {Bacillus halodurans} SCOP: a.69.4.1
Length = 113
Score = 29.8 bits (67), Expect = 0.43
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 55 FLAAAAAGLTVAEVTGSNVVSVAEDELMR 83
F AA G V ++TG +V + DELM+
Sbjct: 66 FEEGAAEGKKVTDLTGEDVAAFC-DELMK 93
>2o4t_A BH3976 protein; LEFT-handed superhelix fold, structural genomics,
joint CENT structural genomics, JCSG, protein structure
initiative; 1.95A {Bacillus halodurans} SCOP: a.69.4.1
Length = 100
Score = 29.0 bits (65), Expect = 0.55
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 55 FLAAAAAGLTVAEVTGSNVVSVAEDELMR 83
F AAAG V +VTG++V + D L+
Sbjct: 47 FEEGAAAGKGVLDVTGTDVAAFC-DALIG 74
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2,
protein structure initiative; 2.04A {Thermotoga
maritima}
Length = 344
Score = 30.7 bits (70), Expect = 0.61
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 20/76 (26%)
Query: 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK----MDP------QLEKETGA-KFEEDLD 168
+G +G GRIG + + NL D D +++++ G K +D
Sbjct: 5 IGVIGLGRIGTIHAE-------NLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPH 57
Query: 169 TML--PKCDIVVVNTP 182
++ P D V+V +
Sbjct: 58 ELIEDPNVDAVLVCSS 73
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex,
crystallographic dimer, oxidoreductase; HET: NAI UGA;
1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6
c.26.3.1 PDB: 1dli_A*
Length = 402
Score = 30.6 bits (70), Expect = 0.66
Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 132 LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT------PLTE 185
++ LK + ++ ++ + E E + DL+ + +I+V N +
Sbjct: 334 VIDILKSKDIKIIIYEPMLNKL--ESEDQSVLVNDLENFKKQANIIVTNRYDNELQDVKN 391
Query: 186 K--TRGMFDKD 194
K +R +F +D
Sbjct: 392 KVYSRDIFGRD 402
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA
NAD-binding rossmann fold, structural genomics; HET:
NAD; 2.40A {Lactobacillus plantarum WCFS1}
Length = 346
Score = 30.3 bits (69), Expect = 0.70
Identities = 11/75 (14%), Positives = 29/75 (38%), Gaps = 17/75 (22%)
Query: 120 VGTVGCGRIGKL----LLQRLKPFNCNLLY-----HDRVKMDPQLEKETGAK-FEEDLDT 169
+G GR+G+ L+ +++ L+ ++++ + E G + +
Sbjct: 11 AAIIGLGRLGERHARHLVNKIQ--GVKLVAACALDSNQLE---WAKNELGVETTYTNYKD 65
Query: 170 ML--PKCDIVVVNTP 182
M+ D + + P
Sbjct: 66 MIDTENIDAIFIVAP 80
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor
complex, transferase; HET: PAL; 1.80A {Pyrococcus
abyssi} SCOP: c.78.1.1 c.78.1.1
Length = 308
Score = 30.2 bits (69), Expect = 0.75
Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 21/113 (18%)
Query: 114 DLEGKTVGTVG---CGRIGKLLLQRLKPFNCNLLY--HDRVKMDPQLE---KETGAKFEE 165
++G +G +G GR L + L ++ L + ++M + +E G K E
Sbjct: 152 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVE 211
Query: 166 --DLDTMLPKCDIVVV---------NTPLTEKTRGMF--DKDRIAKMKKGVLI 205
L+ ++ K D++ V + K +G + + + K K + I
Sbjct: 212 TTTLEDVIGKLDVLYVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRI 264
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P;
1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB:
1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A*
1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A*
2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Length = 310
Score = 29.8 bits (68), Expect = 0.92
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 21/113 (18%)
Query: 114 DLEGKTVGTVG---CGRIGKLLLQRLKPFNCNLLY---HDRVKMDPQLE---KETGAKFE 164
L+ V VG GR L Q L F+ N Y D + M + E G +
Sbjct: 151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWS 210
Query: 165 E--DLDTMLPKCDIVVV--------NTPLTEKTRGMF--DKDRIAKMKKGVLI 205
++ ++ + DI+ + + + F + K + +
Sbjct: 211 LHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKV 263
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1;
transhydrogenase domain I, oxidoreductase; 1.81A
{Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB:
1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A*
2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Length = 384
Score = 29.9 bits (68), Expect = 1.0
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 157 KETGAKFEEDLDTMLPKCDIVV-VNTPLTEKTRGMFDKDRIAKMKKGVLIV 206
GA L + D+V V P D +A +K+G +++
Sbjct: 51 TAAGATIASTAAQALSQADVVWKVQRP----MTAEEGTDEVALIKEGAVLM 97
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 29.8 bits (67), Expect = 1.1
Identities = 20/148 (13%), Positives = 42/148 (28%), Gaps = 42/148 (28%)
Query: 67 EVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCG 126
++ N + E +M + + G + +G G
Sbjct: 130 DIAIYNSIPTVEGTIMLAIQHTDYTIHGSQVAV-----------------------LGLG 166
Query: 127 RIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEK-----ETGAK--FEEDLDTMLPKCDIVV 178
R G + + N VK E G ++L + D +
Sbjct: 167 RTGMTIARTFAALGAN------VKVGARSSAHLARITEMGLVPFHTDELKEHVKDID-IC 219
Query: 179 VNTPLTEKTRGMFDKDRIAKMKKGVLIV 206
+NT + + ++ ++ M LI+
Sbjct: 220 INTIPSM----ILNQTVLSSMTPKTLIL 243
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Length = 393
Score = 29.7 bits (67), Expect = 1.3
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 13/76 (17%)
Query: 120 VGTVGCGRIGKLLLQ--RLKPFNCNLLYHDRVKM----DPQLEKETGAKF-----EEDLD 168
+G +G G +GK + R+ + L + +F D
Sbjct: 28 IGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWR 87
Query: 169 TML--PKCDIVVVNTP 182
++ P+ D+V V TP
Sbjct: 88 ALIADPEVDVVSVTTP 103
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2,
protein structure in midwest center for structural
genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella
typhimurium}
Length = 357
Score = 29.2 bits (66), Expect = 1.6
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 20/77 (25%)
Query: 120 VGTVGCGRIGKL----LLQRLKPFNCNLLYHDRVKMDPQLEK--------ETGAKFEEDL 167
G VG G IG L + ++ V D + AK D
Sbjct: 26 AGIVGIGMIGSDHLRRLANTVS--GVEVVA---V-CDIVAGRAQAALDKYAIEAKDYNDY 79
Query: 168 DTML--PKCDIVVVNTP 182
++ ++V++
Sbjct: 80 HDLINDKDVEVVIITAS 96
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein
structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA
family oxidoreductase; 2.65A {Vibrio cholerae} SCOP:
c.2.1.3 d.81.1.5
Length = 323
Score = 28.9 bits (65), Expect = 1.8
Identities = 8/74 (10%), Positives = 20/74 (27%), Gaps = 17/74 (22%)
Query: 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK---MDPQLEK--ETGAKFE-----EDLDT 169
+ +G G I + L ++ + ++ D
Sbjct: 5 IAMIGLGDIAQKAYLP------VLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRD 58
Query: 170 ML-PKCDIVVVNTP 182
+L D V+++
Sbjct: 59 VLQYGVDAVMIHAA 72
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium, two domain; 2.30A {Rhizobium etli}
Length = 330
Score = 28.5 bits (64), Expect = 2.7
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 14/70 (20%)
Query: 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK----MDPQLEKETGAKFEEDLDTML---P 172
+ VG G+I + + P + + K E G ++ ML P
Sbjct: 28 LAIVGVGKIVR---DQHLPS---IAKNANFKLVATASRHGTVE-GVNSYTTIEAMLDAEP 80
Query: 173 KCDIVVVNTP 182
D V + P
Sbjct: 81 SIDAVSLCMP 90
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport,
flavoprotein, FMN, transport; HET: FMN; 2.00A
{Desulfovibrio desulfuricans} PDB: 3f6s_A* 3f90_A*
3kap_A* 3kaq_A*
Length = 148
Score = 27.6 bits (62), Expect = 3.2
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 11/73 (15%)
Query: 109 AYRAYDLEGKTVGTVGCG--------RIGKLLLQRLKPFNCNLLYHDRVKMD--PQLEKE 158
+ L G+ V G + +R K ++ + +KM+ + E
Sbjct: 77 EFDRIGLAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGATII-AEGLKMEGDASNDPE 135
Query: 159 TGAKFEEDLDTML 171
A F ED+ L
Sbjct: 136 AVASFAEDVLKQL 148
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 28.0 bits (63), Expect = 3.6
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 103 WNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK 137
A + A+D + + +G G +G L L LK
Sbjct: 159 LEHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLK 193
>1wdd_A Ribulose bisphosphate carboxylase large chain; rubisco,
photosynthesis, alpha/beta barrel, N-methylmethioni
translational modification, lyase; HET: KCX CAP; 1.35A
{Oryza sativa} SCOP: c.1.14.1 d.58.9.1 PDB: 3axk_A*
3axm_A* 1rlc_L* 4rub_A* 3rub_L 1ej7_L 1aa1_L* 1aus_L
1rbo_L* 1rco_L* 1rcx_L* 1rxo_L* 1gk8_A* 1ir2_A* 1uzd_A*
1uzh_A* 2v69_A* 1uwa_A* 2v63_A* 2v67_A* ...
Length = 477
Score = 28.1 bits (62), Expect = 4.3
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 255 MTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQ 302
M+P T A + + AGVKD Y+ E I+ A + PQ
Sbjct: 1 MSPQ---TETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQ 45
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 27.8 bits (61), Expect = 4.4
Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 119 TVGTVGCGRIGKLLLQRLKPFNCNLL-YHDR-VKMDPQLEKETGAKFEEDLDTMLPKCDI 176
+ +G G + L + L ++ + R + +L ++ A++ DL + P +
Sbjct: 12 PIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKL 71
Query: 177 VVVNTP 182
+V+
Sbjct: 72 YIVSLK 77
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 27.8 bits (63), Expect = 4.6
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 73 VVSVAEDELMR-ILILVRNFLPGHHQVI--SGEWNVAGVAYRAYDLEGKTVGTVGCG 126
+++V+++EL+ + V+ +G + A L+ K +G + G
Sbjct: 257 ILTVSDEELIDCLKFYAAR----MKIVVEPTGCLSFAAARAMKEKLKNKRIGIIISG 309
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE; 2.55A
{Mesorhizobium loti}
Length = 301
Score = 27.8 bits (61), Expect = 5.1
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 90 NFLPGHHQVISGEWNVAGVAYRAYDL 115
NFL ++ +W +G+ +DL
Sbjct: 184 NFLDTGERMWIVDWEYSGMNDPLWDL 209
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; 1.90A {Escherichia coli}
SCOP: c.124.1.2
Length = 220
Score = 27.6 bits (62), Expect = 5.1
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 45 GN---EYASMNPNFLAAAAAGLTVAEV 68
GN + ++ N N L A AA +T+ E
Sbjct: 163 GNLTYQLSARNFNPLIALAADITLVEP 189
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A;
CO-expressed complex, hetero-tetramer, structural
genomics, PSI-2; 2.59A {Bacillus subtilis}
Length = 241
Score = 27.3 bits (61), Expect = 5.2
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 45 GN---EYASMNPNFLAAAAAGLTVAEV 68
GN + N N +AA A +T+AE
Sbjct: 166 GNLIFRKTARNFNPIAAMAGKITIAEA 192
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A
{Bacillus caldolyticus} SCOP: c.61.1.1
Length = 209
Score = 27.5 bits (61), Expect = 5.2
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 177 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 236
V + TP+++ + ++ + I+ G + ++ A GHI Y
Sbjct: 53 VEIETPVSKARAKVIAGKKLG----VIPILRAGIGMVDGILKLIPAAKVGHIGLYRDPQT 108
Query: 237 N 237
Sbjct: 109 L 109
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS)
domain, structural genomics, protein structure
initiative, PSI; 2.10A {Bacillus subtilis} SCOP:
d.37.1.1
Length = 159
Score = 27.0 bits (60), Expect = 5.7
Identities = 10/92 (10%), Positives = 31/92 (33%), Gaps = 9/92 (9%)
Query: 22 SSSRFSRHYASSGSKKIVGVFYKGN--EYASMNPNFLAAAAAGLTVAEVTGSNVVSVAED 79
+ + ++ S ++ G+ +TV EV +++ + +
Sbjct: 43 TKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVMLTDIPRLHIN 102
Query: 80 ELMR---ILILVRNFLPGHHQVISGEWNVAGV 108
+ + +++ F+ V + E G+
Sbjct: 103 DPIMKGFGMVINNGFVC----VENDEQVFEGI 130
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 27.5 bits (62), Expect = 5.7
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 8/32 (25%)
Query: 95 HHQVISGEWNVAGVAYRAYDLEGKTVGTVGCG 126
+H +G W + D G+ VG +G G
Sbjct: 172 YH---TGNWP-----HEPVDFSGQRVGVIGTG 195
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD;
1.50A {Pseudomonas aeruginosa}
Length = 318
Score = 27.6 bits (61), Expect = 5.7
Identities = 23/178 (12%), Positives = 45/178 (25%), Gaps = 40/178 (22%)
Query: 118 KTVGTVGC-GRIGKLLLQRLKPFNCNLL-----YHDRVKMDPQLEK-ETGAKFE-----E 165
K +G G I ++ +K L+ +D + E +FE
Sbjct: 4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHA 63
Query: 166 DLDTML--PKCDIVVVNTP------------------LTEK--------TRGMFDKDRIA 197
D V + +P + EK + +R
Sbjct: 64 SNLKRDSATALDYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERET 123
Query: 198 KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM 255
+ ++ AI+ + V S H + W+ P ++
Sbjct: 124 DKRLYNILQLRHHQAIIALKDKVAREKSPHKYEVDLTYITSRGNWYLKSWKGDPRKSF 181
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein
structure initiative, joint center for structural G
oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima}
SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Length = 253
Score = 27.3 bits (60), Expect = 5.8
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 8/59 (13%)
Query: 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVV 178
V +G G IGK L++ + D + G ++ + VV
Sbjct: 15 VLIIGMGNIGKKLVELGN-------FEKIYAYDRISKDIPGVVRLDEFQ-VPSDVSTVV 65
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE,
anisotropic refinement, redox protein; HET: FMN; 1.30A
{Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A*
1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A*
1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A*
1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Length = 147
Score = 26.8 bits (60), Expect = 6.2
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 9/50 (18%)
Query: 111 RAYDLEGKTVGTVGCG--------RIGKLLLQRLKPFNCNLLYHDRVKMD 152
+G+ V GCG + ++LK ++ D +++D
Sbjct: 78 EETGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQ-DGLRID 126
>3q31_A Carbonic anhydrase; glysosy secreted, dimeric, lyase; HET: NAG;
2.70A {Aspergillus oryzae}
Length = 244
Score = 27.0 bits (60), Expect = 7.4
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 29 HYASSGSKKIVGVFYKGNEYASMNPNF 55
++ +VG F++ +E P F
Sbjct: 119 FQTAAKETAVVGFFFQLSEVGDSVPLF 145
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics,
protein structur initiative, midwest center for
structural genomics; 2.40A {Clostridium difficile 630}
Length = 148
Score = 26.2 bits (59), Expect = 9.1
Identities = 1/20 (5%), Positives = 9/20 (45%)
Query: 274 VKDMLDRYFKGEDFPVQNYI 293
++D+ ++ ++ +
Sbjct: 75 IRDLYNQKINENKIELEEIL 94
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 26.9 bits (60), Expect = 9.1
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 161 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMD 215
+L+ LP + V V R + + +++G I + A
Sbjct: 129 LBHRRZLZKALPGTEFVDV-GZPVMWZRVIKSSEEZBLIRZGARISDIGGAATAA 182
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 26.7 bits (60), Expect = 9.3
Identities = 7/43 (16%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 154 QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI 196
+L ++ + + ++ K ++V T + G+ D+D
Sbjct: 167 KLAQKFPLEVVNSPEEVIDKVQVIVNTTSV-----GLKDEDPE 204
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 26.6 bits (58), Expect = 9.3
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVV 178
VG +G G IGK L + L+ + +D + E K +D L + D+ V
Sbjct: 3 VGLIGYGAIGKFLAEWLERNGFEIAA----ILDVRGEH---EKMVRGIDEFLQREMDVAV 55
Query: 179 VNTP 182
Sbjct: 56 EAAS 59
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 26.9 bits (60), Expect = 9.5
Identities = 8/55 (14%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 161 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMD 215
+ + L P ++V V + R + + ++ G I + A+++
Sbjct: 129 LQNRDKLAARYPDAELVDV-AAACMRMRMIKSAEEHVMIRHGARIADIGGAAVVE 182
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 26.8 bits (60), Expect = 9.5
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 5/27 (18%)
Query: 100 SGEWNVAGVAYRAYDLEGKTVGTVGCG 126
+ W + D GK VG +G G
Sbjct: 179 TARWP-----HDGVDFTGKRVGVIGTG 200
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 27.1 bits (60), Expect = 9.5
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 10/60 (16%)
Query: 60 AAGLTVAEV----------TGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVA 109
AGL E + +S + + ++ N ++ISGE G+
Sbjct: 286 MAGLACGEPNPLGWEILRNCATQFISCQDSVAALGMRVLGNPYGNDPRIISGESGAVGLG 345
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 26.8 bits (60), Expect = 9.7
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 107 GVAY---RAYDLEGKTVGTVGCGRIGKLLLQRLK 137
G A A + GK+V G G +G L + K
Sbjct: 155 GNAVDTVLAGPISGKSVLITGAGPLGLLGIAVAK 188
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP,
oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo
sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Length = 322
Score = 26.8 bits (60), Expect = 9.8
Identities = 13/93 (13%), Positives = 27/93 (29%), Gaps = 12/93 (12%)
Query: 95 HHQVISGEWNVAGV--AYRAYDLEGKTVGTVGCGRIGKLLLQRL------KPFNCNLLYH 146
HH + +GV + +VG +G G++ L +
Sbjct: 2 HHH----HHHSSGVDLGTENLYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSP 57
Query: 147 DRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV 179
D ++ G K + D++ +
Sbjct: 58 DMDLATVSALRKMGVKLTPHNKETVQHSDVLFL 90
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.398
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,919,053
Number of extensions: 311099
Number of successful extensions: 1092
Number of sequences better than 10.0: 1
Number of HSP's gapped: 969
Number of HSP's successfully gapped: 134
Length of query: 304
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 211
Effective length of database: 4,105,140
Effective search space: 866184540
Effective search space used: 866184540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)