RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 021995
(304 letters)
>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp.,
strain 101 [TaxId: 306]}
Length = 188
Score = 137 bits (346), Expect = 1e-40
Identities = 93/188 (49%), Positives = 117/188 (62%)
Query: 74 VSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLL 133
+SVAE +M IL LVRN+LP H G WN+A AYDLE VGTV GRIG +L
Sbjct: 1 ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVL 60
Query: 134 QRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK 193
+RL PF+ +L Y DR ++ +EKE + + M P CD+V +N PL +T M +
Sbjct: 61 RRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIND 120
Query: 194 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ 253
+ + K+G IVN ARG + D AV A SG +AGY+GDVW PQPAPKDHPWR MP
Sbjct: 121 ETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYN 180
Query: 254 AMTPHVSG 261
MTPH+SG
Sbjct: 181 GMTPHISG 188
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 191
Score = 118 bits (297), Expect = 3e-33
Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 2/189 (1%)
Query: 74 VSVAEDELMRILILVRNFLPGHHQVISGEWN-VAGVAYRAYDLEGKTVGTVGCGRIGKLL 132
V+ AE ++ +L R G + + W + L+ KT+G G G IG+ L
Sbjct: 3 VATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQAL 62
Query: 133 LQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 192
+R + F+ ++ Y D + E A F + LD++L +N P T +TR F+
Sbjct: 63 AKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFN 122
Query: 193 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN 252
K I + +G ++VN ARG ++D + VV A +G +A DV+ +P + + +PN
Sbjct: 123 KATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPN 181
Query: 253 QAMTPHVSG 261
+ PH+
Sbjct: 182 TFLFPHIGS 190
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 184
Score = 111 bits (277), Expect = 2e-30
Identities = 61/188 (32%), Positives = 94/188 (50%), Gaps = 5/188 (2%)
Query: 72 NVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKL 131
N+ S AE L +L R + W + + GKTVG VG GRIG+L
Sbjct: 1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIF--GKTVGVVGLGRIGQL 58
Query: 132 LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 191
+ QR+ F ++ +D + P + G + D +L + D + V+ P T +T G+
Sbjct: 59 VAQRIAAFGAYVVAYDP-YVSPARAAQLGIELLSL-DDLLARADFISVHLPKTPETAGLI 116
Query: 192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMP 251
DK+ +AK K GV+IVN ARG ++D A+ DA + GH+ DV+ +P D P +
Sbjct: 117 DKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCT-DSPLFELA 175
Query: 252 NQAMTPHV 259
+TPH+
Sbjct: 176 QVVVTPHL 183
>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 110 bits (275), Expect = 5e-30
Identities = 56/194 (28%), Positives = 92/194 (47%), Gaps = 10/194 (5%)
Query: 72 NVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKL 131
N SVAE + +L+L+R + + G N +A +++ GK +G +G G IG
Sbjct: 1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGN--KLAAGSFEARGKKLGIIGYGHIGTQ 58
Query: 132 LLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF 191
L + + ++D P A + L +L D+V ++ P T+ M
Sbjct: 59 LGILAESLGMYVYFYDIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMM 114
Query: 192 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA----PKDHPW 247
I+ MK G L++N +RG ++D A+ DA +S H+AG + DV+ +PA P P
Sbjct: 115 GAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPL 174
Query: 248 RYMPNQAMTPHVSG 261
N +TPH+ G
Sbjct: 175 AEFDNVLLTPHIGG 188
>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human
(Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 193
Score = 101 bits (252), Expect = 1e-26
Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 7/191 (3%)
Query: 75 SVAEDELMRILILVRNFLPGHHQVISGEW-----NVAGVAYRAYDLEGKTVGTVGCGRIG 129
A+ L IL L R H + G + VA A + G+T+G +G GR+G
Sbjct: 2 ETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVG 61
Query: 130 KLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG 189
+ + R K F N+L++D + +E+ G + L +L D V ++ L E
Sbjct: 62 QAVALRAKAFGFNVLFYDP-YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH 120
Query: 190 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-KDHPWR 248
+ + + +M++G +VN ARG ++D +A+ A G I G + DV +P P +
Sbjct: 121 LINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLK 180
Query: 249 YMPNQAMTPHV 259
PN TPH
Sbjct: 181 DAPNLICTPHA 191
>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus
helveticus [TaxId: 1587]}
Length = 197
Score = 77.9 bits (190), Expect = 9e-18
Identities = 48/198 (24%), Positives = 89/198 (44%), Gaps = 18/198 (9%)
Query: 75 SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQ 134
++AE ++ ++R +V + A ++ + VG VG G IG++ +Q
Sbjct: 3 AIAEHAAIQAARILRQDKAMDEKVARHDLRWAP--TIGREVRDQVVGVVGTGHIGQVFMQ 60
Query: 135 RLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 194
++ F ++ +D + E + + LD + + D++ ++ P M + +
Sbjct: 61 IMEGFGAKVITYDIFRNPEL---EKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDE 117
Query: 195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRY----- 249
IAKMK+ V+IVN +RG ++DT AV+ SG I GY+ DV+ + + W
Sbjct: 118 SIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPD 177
Query: 250 --------MPNQAMTPHV 259
PN +TP
Sbjct: 178 ARLADLIARPNVLVTPKT 195
>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase
{Lactobacillus casei [TaxId: 1582]}
Length = 199
Score = 76.8 bits (187), Expect = 2e-17
Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 18/200 (9%)
Query: 75 SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQ 134
++AE L L L+RN Q+ +G++ AG + +L +TVG +G G IG++ ++
Sbjct: 4 AIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAG-TFIGKELGQQTVGVMGTGHIGQVAIK 62
Query: 135 RLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 194
K F ++ +D M L+ + + D++ ++ P E+ + ++
Sbjct: 63 LFKGFGAKVIAYDPYPMKGDHPD----FDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEA 118
Query: 195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA------------- 241
MK G +++N AR ++DTQA++ SG +AG D + +
Sbjct: 119 AFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKD 178
Query: 242 PKDHPWRYMPNQAMTPHVSG 261
P MPN ++PH++
Sbjct: 179 PLWDELLGMPNVVLSPHIAY 198
>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 181
Score = 69.0 bits (167), Expect = 1e-14
Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 10/188 (5%)
Query: 75 SVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQ 134
+VAE L +L + + ++ G++ ++G+ V +G G IG + +
Sbjct: 3 AVAEFALALLLAPYKRIIQYGEKMKRGDYGRD---VEIPLIQGEKVAVLGLGEIGTRVGK 59
Query: 135 RLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD 194
L + R + +F L+ L + V PL + TRG+
Sbjct: 60 ILAALGAQVRGFSRTPKEGP------WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQ 113
Query: 195 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW-NPQPAPKDHPWRYMPNQ 253
+A M + + VN R ++D V+ ++ DVW KD + +PN
Sbjct: 114 HLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNV 173
Query: 254 AMTPHVSG 261
TP V+G
Sbjct: 174 VATPWVAG 181
>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 163
Score = 44.2 bits (104), Expect = 3e-06
Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 8/118 (6%)
Query: 111 RAYDLE--GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD 168
RA D+ GK G G +GK Q L+ F ++ + ++ A E
Sbjct: 16 RATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINA-----LQAAMEGYEV 70
Query: 169 TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVN-NARGAIMDTQAVVDACSS 225
T + + T + +MK ++ N +D + + +
Sbjct: 71 TTMDEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVE 128
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase
{Pseudomonas sp., strain 101 [TaxId: 306]}
Length = 186
Score = 39.6 bits (92), Expect = 2e-04
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 12/75 (16%)
Query: 37 KIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAE--------DELMRILILV 88
K+ G+++ + +A +TVAEVT N ++ E++
Sbjct: 115 KLALTAGIGSDHVDLQ----SAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEG 170
Query: 89 RNFLPGHHQVISGEW 103
R + V G
Sbjct: 171 RPIRDEYLIVQGGAL 185
Score = 25.3 bits (55), Expect = 7.4
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 256 TPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 300
+ + TT+ AQ RYAAG +++L+ +F+G + IV+ G LA
Sbjct: 142 VTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALA 186
>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase
{Salmonella typhimurium [TaxId: 90371]}
Length = 161
Score = 35.9 bits (82), Expect = 0.002
Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 2/133 (1%)
Query: 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV 179
VG +G G +GK + + L +L+ DR GA+ + +CD+++
Sbjct: 3 VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIIT 62
Query: 180 NTPLTEKTRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 237
P + + + + I K G ++++ + A + ++ + DA + + V
Sbjct: 63 MLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSG 122
Query: 238 PQPAPKDHPWRYM 250
+P D M
Sbjct: 123 GEPKAIDGTLSVM 135
>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1
{Salmonella typhimurium [TaxId: 90371]}
Length = 113
Score = 32.8 bits (74), Expect = 0.012
Identities = 7/96 (7%), Positives = 20/96 (20%), Gaps = 1/96 (1%)
Query: 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 173
L + VG G + + + L L + + +
Sbjct: 9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGP-FDE 67
Query: 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA 209
+ + ++ + + N
Sbjct: 68 TLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNVV 103
>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 130
Score = 32.0 bits (72), Expect = 0.033
Identities = 9/47 (19%), Positives = 13/47 (27%)
Query: 57 AAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEW 103
AA A G+ V S + A+D + V
Sbjct: 82 AATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVN 128
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 178
Score = 31.9 bits (72), Expect = 0.053
Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 23/116 (19%)
Query: 120 VGTVGCGRIGKLLLQRL-----------------KPFNCNLLYHDRV---KMDPQLEKET 159
V G G IGK + + R+ + + +E+
Sbjct: 4 VAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEES 63
Query: 160 GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMD 215
G ++ ++ DIVV TP G K ++++ + + + D
Sbjct: 64 GIPVAGTVEDLIKTSDIVVDTTP---NGVGAQYKPIYLQLQRNAIFQGGEKAEVAD 116
>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase
{Lactobacillus helveticus [TaxId: 1587]}
Length = 134
Score = 31.4 bits (71), Expect = 0.054
Identities = 8/69 (11%), Positives = 18/69 (26%), Gaps = 7/69 (10%)
Query: 37 KIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHH 96
+ + G + M A G + V S + +++ +
Sbjct: 71 TKMSLRNVGVDNIDMA----KAKELGFQITNVPV---YSYTTHAVRNMVVKAFDNNLELV 123
Query: 97 QVISGEWNV 105
+ E V
Sbjct: 124 EGKEAETPV 132
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 162
Score = 31.8 bits (71), Expect = 0.055
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 2/136 (1%)
Query: 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIV 177
K + +G G +G + L L D V+ GA + D+V
Sbjct: 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVV 61
Query: 178 VVNTPLTEKTRGMFDKDR--IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV 235
+ P ++ G++ D +A + G L++ + A + + A +A V
Sbjct: 62 ISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPV 121
Query: 236 WNPQPAPKDHPWRYMP 251
+M
Sbjct: 122 SGGTAGAAAGTLTFMV 137
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate
ligase MurD {Escherichia coli [TaxId: 562]}
Length = 93
Score = 30.4 bits (68), Expect = 0.066
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Query: 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR---VKMDPQLEKETGAKFEEDLDTM 170
D +GK V +G G G + D +L + D
Sbjct: 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEW 61
Query: 171 LPKCDIVVVNT 181
L D++V +
Sbjct: 62 LMAADLIVASP 72
>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 121
Score = 30.0 bits (67), Expect = 0.14
Identities = 11/84 (13%), Positives = 19/84 (22%), Gaps = 29/84 (34%)
Query: 56 LAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDL 115
+ +TVA GSN ++ VR
Sbjct: 66 WESIPPHVTVAGNAGSNGYGNERVWRQMVMEAVR-------------------------- 99
Query: 116 EGKTVGTVGCGRIGKLLLQRLKPF 139
+ T G + + +R
Sbjct: 100 ---NLITYATGGRPRNIAKREDYI 120
>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate
dehydrogenase {Lactobacillus casei [TaxId: 1582]}
Length = 131
Score = 29.7 bits (66), Expect = 0.19
Identities = 6/37 (16%), Positives = 11/37 (29%)
Query: 62 GLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQV 98
G+ ++ V +V + LV G
Sbjct: 91 GIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGETST 127
>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga
maritima [TaxId: 2336]}
Length = 153
Score = 30.0 bits (66), Expect = 0.19
Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 3/114 (2%)
Query: 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV 179
+ VG G + + L+ LK R + E L+ +V V
Sbjct: 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFV 61
Query: 180 NTP---LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG 230
P + + D + G L + + + + SS A
Sbjct: 62 IVPDRYIKTVANHLNLGDAVLVHCSGFLSSEIFKKSGRASIHPNFSFSSLEKAL 115
>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor
CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 133
Score = 29.5 bits (66), Expect = 0.23
Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 10/86 (11%)
Query: 20 LRSSSRFSRHYASSGSK-KIVGVFYKGNEYASMNPNFLAAAAAGLTVAEVTGSNVVSVAE 78
+ + +R +I+ G N + +A G+ V V ++V +
Sbjct: 49 MYHTITLTREDLEKFKALRIIVRIGSGF----DNIDIKSAGDLGIAVCNVPAASV-YSEQ 103
Query: 79 DELMRILILVRNFLPGHHQVISGEWN 104
+ R + I+G
Sbjct: 104 ASIEMREEAAREI----RRAITGRIP 125
>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase
(KARI) {Pseudomonas aeruginosa [TaxId: 287]}
Length = 182
Score = 29.8 bits (67), Expect = 0.25
Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 24/142 (16%)
Query: 115 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE-DLDTMLPK 173
++GK V +G G G LK ++ R + K + D+ T +
Sbjct: 14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLR-SGSATVAKAEAHGLKVADVKTAVAA 72
Query: 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 233
D+V++ TP E ++ ++ +KKG + A + G Y+
Sbjct: 73 ADVVMILTP-DEFQGRLYKEEIEPNLKKGATL----------------AFAHGFSIHYNQ 115
Query: 234 DVWNPQPAPKDHPWRYMPNQAM 255
D + +A
Sbjct: 116 -----VVPRADLDVIMIAPKAP 132
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 165
Score = 29.4 bits (64), Expect = 0.38
Identities = 24/143 (16%), Positives = 44/143 (30%), Gaps = 3/143 (2%)
Query: 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-EDLDTMLPKCDIVV 178
+G VG G IG L L+ L+ R + + E E ++L I+
Sbjct: 3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIF 62
Query: 179 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP 238
+ TP+ + V V + + AI + + + + G
Sbjct: 63 LCTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQGI 122
Query: 239 QPAPKDHPWRYMPNQAMTPHVSG 261
A ++ +TP
Sbjct: 123 DGAEENLF--VNAPYVLTPTEYT 143
>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 163
Score = 28.7 bits (64), Expect = 0.50
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 13/102 (12%)
Query: 111 RAYD--LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLY---HDRVKMDPQLEKETGAKFEE 165
RA D + GK V G G +GK +K + + +E +E
Sbjct: 15 RATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDE 74
Query: 166 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVN 207
++ K D + T + + + + KMK ++ N
Sbjct: 75 ----IVDKGDFFITCTGNVD----VIKLEHLLKMKNNAVVGN 108
>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH),
C-terminal (UDP-binding) domain {Streptococcus pyogenes
[TaxId: 1314]}
Length = 108
Score = 27.9 bits (62), Expect = 0.54
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 11/57 (19%)
Query: 149 VKMDPQLEKET---GAKFEEDLDTMLPKCDIVVVNTP------LTEK--TRGMFDKD 194
+ +P L K + DL+ + +I+V N + K +R +F +D
Sbjct: 52 IIYEPMLNKLESEDQSVLVNDLENFKKQANIIVTNRYDNELQDVKNKVYSRDIFGRD 108
>d2hh6a1 a.69.4.1 (A:1-112) Uncharacterized protein BH3980
{Bacillus halodurans [TaxId: 86665]}
Length = 112
Score = 28.2 bits (63), Expect = 0.57
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 55 FLAAAAAGLTVAEVTGSNVVSVAEDELMR 83
F AA G V ++TG +V + DELM+
Sbjct: 65 FEEGAAEGKKVTDLTGEDVAAFC-DELMK 92
>d2o3la1 a.69.4.1 (A:14-95) Hypothetical protein BCE3448 {Bacillus
cereus [TaxId: 1396]}
Length = 82
Score = 27.4 bits (61), Expect = 0.62
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 55 FLAAAAAGLTVAEVTGSNVVSVAEDELMR 83
F A AA G V ++TG +V S A DEL+
Sbjct: 49 FEAGAAEGRQVLDITGEDVASFA-DELVA 76
>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 168
Score = 28.4 bits (62), Expect = 0.74
Identities = 25/156 (16%), Positives = 41/156 (26%), Gaps = 33/156 (21%)
Query: 106 AGV-AYRAYDL----EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG 160
G+ Y GK VG VG G IG + K R + + G
Sbjct: 12 GGLTVYSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMG 71
Query: 161 A-------KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVL--------- 204
A + + + D++VV + + V
Sbjct: 72 ADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQHEM 131
Query: 205 ------------IVNNARGAIMDTQAVVDACSSGHI 228
I +A G+I + ++ S I
Sbjct: 132 LSLKPYGLKAVSISYSALGSIKELNQLLKLVSEKDI 167
>d2o4ta1 a.69.4.1 (A:16-105) Uncharacterized protein BH3976
{Bacillus halodurans [TaxId: 86665]}
Length = 90
Score = 27.4 bits (61), Expect = 0.79
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 55 FLAAAAAGLTVAEVTGSNVVSVAEDELMR 83
F AAAG V +VTG++V + D L+
Sbjct: 45 FEEGAAAGKGVLDVTGTDVAAFC-DALIG 72
>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase
{Rhodococcus sp., M4 [TaxId: 1831]}
Length = 201
Score = 28.2 bits (62), Expect = 0.87
Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 2/126 (1%)
Query: 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 173
L+G TV G G +G L LL D G D +
Sbjct: 24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTP 83
Query: 174 CDIVVVNTPLTEKTRGMFDKDRIAKMKKG--VLIVNNARGAIMDTQAVVDACSSGHIAGY 231
CD+ T + + + +I + A I+ + ++ A AG
Sbjct: 84 CDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 143
Query: 232 SGDVWN 237
+ +
Sbjct: 144 AIHLVG 149
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId:
1423]}
Length = 134
Score = 28.0 bits (61), Expect = 0.89
Identities = 9/57 (15%), Positives = 16/57 (28%)
Query: 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 174
K +G GR G +++ L +L D + T +
Sbjct: 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENEL 57
>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide
synthetase PurK (AIRC), N-domain {Escherichia coli
[TaxId: 562]}
Length = 78
Score = 26.7 bits (59), Expect = 1.0
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 118 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP 153
K V +G G++G++L Q +P +
Sbjct: 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPA 37
>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus
sphaericus [TaxId: 1421]}
Length = 230
Score = 28.1 bits (62), Expect = 1.0
Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 7/106 (6%)
Query: 114 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEEDLDTMLP 172
LEG V G G + K L ++L L+ D K E GA
Sbjct: 36 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGV 95
Query: 173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQA 218
CDI + + I ++K V I +A + D +
Sbjct: 96 TCDIFAPCA-----LGAVLNDFTIPQLKAKV-IAGSADNQLKDPRH 135
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain
{Archaeon Methanopyrus kandleri [TaxId: 2320]}
Length = 159
Score = 27.8 bits (61), Expect = 1.3
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 114 DLEGKTVGTVGCGRIGKLLLQ-RLKPFNCNLLYHDRVKMDPQ-LEKETGAKFEEDLDTM- 170
L KTV VG G +GK + + + +L +R L ++ G + + +
Sbjct: 21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVD 80
Query: 171 -LPKCDIVVVNTPLTEKTRGMFDKDRIAK 198
L + D+VV T + D +
Sbjct: 81 HLARSDVVVSATAAPHPVIHVDDVREALR 109
>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex
aeolicus [TaxId: 63363]}
Length = 171
Score = 27.6 bits (60), Expect = 1.4
Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 5/103 (4%)
Query: 118 KTVGTVGCGRIGKLLLQRLK--PFNCNLLYHDRVKMDPQLEKETGAKFE---EDLDTMLP 172
+ V VG G +G + L+ F + +D + G E
Sbjct: 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDF 61
Query: 173 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMD 215
D V++++P+ I V + +G ++
Sbjct: 62 SPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVY 104
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 171
Score = 27.6 bits (61), Expect = 1.5
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 21/86 (24%)
Query: 118 KTVGTVGCGRIGKLLLQRL------------KPFNCNLLYHDRVK---------MDPQLE 156
K V G G +GK + + K K +L
Sbjct: 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLF 61
Query: 157 KETGAKFEEDLDTMLPKCDIVVVNTP 182
++ G + +D ML + DIV+ TP
Sbjct: 62 EKAGIEVAGTVDDMLDEADIVIDCTP 87
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 172
Score = 27.2 bits (60), Expect = 1.8
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 120 VGTVGCGRIGKLLLQRLK 137
VG G G IGK + +
Sbjct: 5 VGVNGYGTIGKRVAYAVT 22
>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643
{Thermotoga maritima [TaxId: 2336]}
Length = 132
Score = 26.6 bits (58), Expect = 2.1
Identities = 10/63 (15%), Positives = 15/63 (23%), Gaps = 8/63 (12%)
Query: 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV 179
V +G G IGK L++ + D + VV
Sbjct: 5 VLIIGMGNIGKKLVELGNFEKIYAYDRISKDIPG--------VVRLDEFQVPSDVSTVVE 56
Query: 180 NTP 182
Sbjct: 57 CAS 59
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice
blast fungus (Magnaporthe grisea) [TaxId: 148305]}
Length = 182
Score = 26.9 bits (58), Expect = 2.2
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ 154
K+V +G G + + L L + R +
Sbjct: 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAK 39
>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase
{Pseudomonas putida [TaxId: 303]}
Length = 201
Score = 26.8 bits (58), Expect = 2.5
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 105 VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK 137
V GV + D + G G K ++ K
Sbjct: 165 VVGVQVISLDDAPRGYGEFDAGVPKKFVIDPHK 197
>g1gk9.1 d.153.1.2 (A:,B:) Penicillin acylase {Escherichia coli
[TaxId: 562]}
Length = 765
Score = 27.3 bits (59), Expect = 2.6
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 2 AMKRVASSAINAFASSGFLRSSSRFSRHYA 31
+ + V + + A SGF+ +HY
Sbjct: 701 SDRPVLAWDVVAPGQSGFIAPDGTVDKHYE 730
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 26.8 bits (58), Expect = 3.2
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 99 ISGEWNVAGVAYRAYDLEGKTVGTVGCG 126
+G + A L+ K +G + G
Sbjct: 277 PTGCLSFAAARAMKEKLKNKRIGIIISG 304
>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 281
Score = 26.7 bits (57), Expect = 3.2
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 122 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD 152
T G++G+ + ++LK N ++ D +D
Sbjct: 7 TGANGQLGREIQKQLKGKNVEVIPTDVQDLD 37
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 172
Score = 26.4 bits (57), Expect = 3.9
Identities = 11/56 (19%), Positives = 19/56 (33%)
Query: 120 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCD 175
V VG GR G + L+ LK + + + + L+ L +
Sbjct: 10 VVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQE 65
>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga
maritima [TaxId: 2336]}
Length = 128
Score = 25.2 bits (54), Expect = 7.2
Identities = 13/97 (13%), Positives = 32/97 (32%), Gaps = 3/97 (3%)
Query: 67 EVTGSNVVSVAEDELMRIL---ILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTV 123
EVT + + D M IL + ++ + + A + G + +
Sbjct: 10 EVTRDEIAACLIDASMNILAHEAHPLPSQSDREETLNVMYRIIDRAKDMMEKLGSKLSAL 69
Query: 124 GCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG 160
G + +R + ++ + L+++ G
Sbjct: 70 TVAAPGPIDTERGIIIDPRNFPLSQIPLANLLKEKYG 106
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 25.6 bits (55), Expect = 7.9
Identities = 7/75 (9%), Positives = 16/75 (21%), Gaps = 7/75 (9%)
Query: 192 DKDRIAKMKKGVLIVNNARGAIMD-------TQAVVDACSSGHIAGYSGDVWNPQPAPKD 244
+ I KM+ + I T + C+ +
Sbjct: 5 TPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYP 64
Query: 245 HPWRYMPNQAMTPHV 259
N+ + +
Sbjct: 65 KSVCISINEVVCHGI 79
>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide
transformylase PurT, N-domain {Escherichia coli [TaxId:
562]}
Length = 111
Score = 24.9 bits (54), Expect = 8.1
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 117 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP 153
V +G G +GK + + ++ DR P
Sbjct: 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAP 47
>g1cp9.1 d.153.1.2 (A:,B:) Penicillin acylase {Providencia rettgeri
[TaxId: 587]}
Length = 750
Score = 25.8 bits (55), Expect = 8.1
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 6 VASSAINAFASSGFLRSSSRFSRHYA 31
V++ + A SGF+ + S HY
Sbjct: 690 VSAWDVVAPGQSGFISPQGKPSPHYQ 715
>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid
dehydrogenase (DAPDH) {Corynebacterium glutamicum
[TaxId: 1718]}
Length = 170
Score = 25.2 bits (54), Expect = 8.9
Identities = 12/111 (10%), Positives = 24/111 (21%), Gaps = 23/111 (20%)
Query: 120 VGTVGCGRIGKLLLQRLK-------------PFNCNLLYHDRVKMDPQLEKE-------- 158
V VG G +G+ + + + + D +
Sbjct: 6 VAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLC 65
Query: 159 --TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVN 207
+ E V + R + A V +V+
Sbjct: 66 MGSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVS 116
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.398
Gapped
Lambda K H
0.267 0.0417 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,158,352
Number of extensions: 54919
Number of successful extensions: 233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 64
Length of query: 304
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,240,546
Effective search space: 271679574
Effective search space used: 271679574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)