Query 021996
Match_columns 304
No_of_seqs 158 out of 1191
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 12:26:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u7u_G Neuregulin 1; signaling 77.7 1.5 5E-05 29.2 2.6 28 245-272 19-49 (55)
2 1a3p_A Epidermal growth factor 70.0 3.1 0.00011 26.0 2.6 30 241-271 11-40 (45)
3 1egf_A Epidermal growth factor 69.1 3.7 0.00013 26.6 2.9 31 241-272 14-44 (53)
4 1nql_B Epidermal growth factor 64.8 3.2 0.00011 27.2 1.9 32 240-272 13-44 (53)
5 1k36_A Epiregulin; EGF-like fo 59.8 6.5 0.00022 24.8 2.6 30 241-272 14-43 (46)
6 1edm_B Factor IX; epidermal gr 59.6 6.8 0.00023 23.3 2.6 29 240-271 10-38 (39)
7 1hae_A Heregulin-alpha; growth 58.5 4.6 0.00016 27.1 1.8 30 241-271 14-46 (63)
8 2ks1_B Epidermal growth factor 56.6 1.5 5.2E-05 27.8 -0.8 17 269-288 2-18 (44)
9 3e50_C Protransforming growth 51.6 11 0.00039 24.3 2.7 31 240-272 15-45 (50)
10 3ltf_D Protein spitz; receptor 46.7 5.2 0.00018 26.6 0.5 31 241-272 16-48 (58)
11 3ca7_A Protein spitz; argos, E 42.1 8.3 0.00028 24.8 0.9 30 241-271 16-47 (52)
12 2rnl_A Amphiregulin; AR, color 40.2 24 0.00082 22.7 3.0 31 240-272 19-49 (50)
13 2l2t_A Receptor tyrosine-prote 36.8 2.9 0.0001 26.5 -1.9 11 278-288 7-17 (44)
14 1tpg_A T-plasminogen activator 34.5 25 0.00085 25.2 2.6 31 240-271 55-85 (91)
15 2k1k_A Ephrin type-A receptor 32.3 3 0.0001 25.6 -2.3 12 280-291 13-24 (38)
16 2k2s_B Micronemal protein 6; m 30.3 20 0.00067 24.1 1.3 30 240-272 18-50 (61)
17 1iox_A Betacellulin; EGF-like 29.4 20 0.0007 23.0 1.2 31 240-272 15-45 (50)
18 3sov_A LRP-6, low-density lipo 25.9 37 0.0013 30.1 2.7 30 247-276 280-313 (318)
19 4d90_A EGF-like repeat and dis 24.7 46 0.0016 25.4 2.8 31 241-272 8-38 (143)
20 1xdt_R Hbegf, heparin-binding 24.3 23 0.00079 25.2 0.8 30 240-271 47-76 (79)
21 2k9y_A Ephrin type-A receptor 23.7 8.9 0.0003 23.4 -1.3 13 279-291 11-23 (41)
No 1
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}
Probab=77.73 E-value=1.5 Score=29.20 Aligned_cols=28 Identities=29% Similarity=0.669 Sum_probs=20.3
Q ss_pred CceeccC---CCCCceeEeeCCCCCCCCCCC
Q 021996 245 GGTCGFG---TDGVRQLCMCGSVNSTSNCDS 272 (304)
Q Consensus 245 ~g~Cg~~---~~~~g~~C~C~~~~~~~~C~~ 272 (304)
+|+|... ....+|.|.|+.+.....|..
T Consensus 19 gGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~ 49 (55)
T 3u7u_G 19 GGECFMVKDLSNPSRYLCKCPNEFTGDRCQN 49 (55)
T ss_dssp TCEEEEECCC--CCCEEEEECTTEESTTSCE
T ss_pred CCCcCCCCccCCCCCEeEeCCCCCcCCCcCc
Confidence 8999532 223589999999877777874
No 2
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Probab=69.96 E-value=3.1 Score=25.97 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=21.6
Q ss_pred cccCCceeccCCCCCceeEeeCCCCCCCCCC
Q 021996 241 CEATGGTCGFGTDGVRQLCMCGSVNSTSNCD 271 (304)
Q Consensus 241 C~~s~g~Cg~~~~~~g~~C~C~~~~~~~~C~ 271 (304)
|.. +|+|.......+|.|.|+.|.....|.
T Consensus 11 C~n-gg~C~~~~~~~~~~C~C~~G~~G~~Ce 40 (45)
T 1a3p_A 11 CLN-GGVXMHIESLDSYTCNCVIGYSGDRCQ 40 (45)
T ss_dssp CSS-SCEEEECTTTSSEEEECCTTEETTTTC
T ss_pred CCC-CCEEEeecCCCCEEEEcCCCCcCCcCC
Confidence 553 789984334458999999987666675
No 3
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Probab=69.09 E-value=3.7 Score=26.64 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=22.9
Q ss_pred cccCCceeccCCCCCceeEeeCCCCCCCCCCC
Q 021996 241 CEATGGTCGFGTDGVRQLCMCGSVNSTSNCDS 272 (304)
Q Consensus 241 C~~s~g~Cg~~~~~~g~~C~C~~~~~~~~C~~ 272 (304)
|.. +|+|.......+|.|.|+.|.....|..
T Consensus 14 C~n-gg~C~~~~~~~~~~C~C~~G~~G~~Ce~ 44 (53)
T 1egf_A 14 CLN-GGVCMHIESLDSYTCNCVIGYSGDRCQT 44 (53)
T ss_dssp SCS-SCEEEEESSSSCEEEECCTTCCSSSSCC
T ss_pred CCC-CcEEEeeCCCCCEEEECCCCCcCCcCCc
Confidence 653 7899842234589999999887778875
No 4
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Probab=64.85 E-value=3.2 Score=27.18 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=23.2
Q ss_pred ccccCCceeccCCCCCceeEeeCCCCCCCCCCC
Q 021996 240 ACEATGGTCGFGTDGVRQLCMCGSVNSTSNCDS 272 (304)
Q Consensus 240 ~C~~s~g~Cg~~~~~~g~~C~C~~~~~~~~C~~ 272 (304)
-|.. +|+|.......+|.|.|+.|.....|.-
T Consensus 13 pC~n-GG~C~~~~~~~~~~C~C~~GytG~~Ce~ 44 (53)
T 1nql_B 13 YCLH-DGVCMYIEALDKYACNCVVGYIGERCQY 44 (53)
T ss_dssp EECT-TCEEEEETTTTEEEEEECTTEESTTSCE
T ss_pred CCCC-CeEEeeecCCCCEEEecCCCCcCCCCCc
Confidence 3653 7899843344589999999877777874
No 5
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Probab=59.78 E-value=6.5 Score=24.80 Aligned_cols=30 Identities=23% Similarity=0.591 Sum_probs=23.0
Q ss_pred cccCCceeccCCCCCceeEeeCCCCCCCCCCC
Q 021996 241 CEATGGTCGFGTDGVRQLCMCGSVNSTSNCDS 272 (304)
Q Consensus 241 C~~s~g~Cg~~~~~~g~~C~C~~~~~~~~C~~ 272 (304)
|.. |+|.+.....+|.|.|..|.....|.-
T Consensus 14 C~n--G~C~~~~~~~~~~C~C~~GytG~~Ce~ 43 (46)
T 1k36_A 14 CLH--GQCIYLVDMSQNYCRCEVGYTGVRCEH 43 (46)
T ss_dssp CSS--EEEEEETTTTEEEEEECTTCSSTTSCC
T ss_pred CCC--CEeeccCCCCCEEEECCCCCccCCCCc
Confidence 764 799875444689999999887778863
No 6
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Probab=59.59 E-value=6.8 Score=23.31 Aligned_cols=29 Identities=28% Similarity=0.579 Sum_probs=21.0
Q ss_pred ccccCCceeccCCCCCceeEeeCCCCCCCCCC
Q 021996 240 ACEATGGTCGFGTDGVRQLCMCGSVNSTSNCD 271 (304)
Q Consensus 240 ~C~~s~g~Cg~~~~~~g~~C~C~~~~~~~~C~ 271 (304)
-|.. +|+|.+.. .+|.|.|+.+.....|.
T Consensus 10 pC~n-gg~C~~~~--~~~~C~C~~G~~G~~Ce 38 (39)
T 1edm_B 10 PCLN-GGSCKDDI--NSYECWCPFGFEGKNCE 38 (39)
T ss_dssp CCCT-TCEEEEET--TEEEEECCTTCCSTTSC
T ss_pred CCCC-CCEeEcCC--CceEeECCCCCcCCccC
Confidence 3653 78998743 57999999987666664
No 7
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A
Probab=58.48 E-value=4.6 Score=27.12 Aligned_cols=30 Identities=30% Similarity=0.700 Sum_probs=21.3
Q ss_pred cccCCceeccC---CCCCceeEeeCCCCCCCCCC
Q 021996 241 CEATGGTCGFG---TDGVRQLCMCGSVNSTSNCD 271 (304)
Q Consensus 241 C~~s~g~Cg~~---~~~~g~~C~C~~~~~~~~C~ 271 (304)
|.. +|+|... ....+|.|.|+.|.....|.
T Consensus 14 C~n-gG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce 46 (63)
T 1hae_A 14 CVN-GGECFMVKDLSNPSRYLCKCQPGFTGARCT 46 (63)
T ss_dssp SCT-TCEEEEEESSSSSCCEEEECCTTEESTTSC
T ss_pred CCC-CcEEecCCccCCCCCEEEECCCCCcCCccC
Confidence 542 7899862 23358999999987666775
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=56.61 E-value=1.5 Score=27.85 Aligned_cols=17 Identities=18% Similarity=0.384 Sum_probs=7.8
Q ss_pred CCCCCCCCCCcccccchhhh
Q 021996 269 NCDSVGSSSSRISWPLSQIS 288 (304)
Q Consensus 269 ~C~~~~~~~~~~~~~~~~~~ 288 (304)
+|.+.. ++...|+++++
T Consensus 2 gCp~~~---s~~~~IA~gVV 18 (44)
T 2ks1_B 2 GCPTNG---PKIPSIATGMV 18 (44)
T ss_dssp CCCCCC---SCSSSSTHHHH
T ss_pred CCCCCC---CCcceEEeehh
Confidence 466532 33444444443
No 9
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=51.62 E-value=11 Score=24.34 Aligned_cols=31 Identities=29% Similarity=0.630 Sum_probs=24.5
Q ss_pred ccccCCceeccCCCCCceeEeeCCCCCCCCCCC
Q 021996 240 ACEATGGTCGFGTDGVRQLCMCGSVNSTSNCDS 272 (304)
Q Consensus 240 ~C~~s~g~Cg~~~~~~g~~C~C~~~~~~~~C~~ 272 (304)
-|. ||+|.+....+.+.|.|..|.....|..
T Consensus 15 yC~--nG~C~~~~~~~~~~C~C~~gy~G~RCe~ 45 (50)
T 3e50_C 15 FCF--HGTCRFLVQEDKPACVCHSGYVGARCEH 45 (50)
T ss_pred ccc--CCEEeeccCCCCeEEECCCCCcccCCCc
Confidence 476 4699987666789999999877777864
No 10
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Probab=46.66 E-value=5.2 Score=26.64 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=22.8
Q ss_pred cccCCceeccCC--CCCceeEeeCCCCCCCCCCC
Q 021996 241 CEATGGTCGFGT--DGVRQLCMCGSVNSTSNCDS 272 (304)
Q Consensus 241 C~~s~g~Cg~~~--~~~g~~C~C~~~~~~~~C~~ 272 (304)
|. .||+|.... ...+|.|.|..|.....|..
T Consensus 16 C~-NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~ 48 (58)
T 3ltf_D 16 CL-NDAHCFAVKIADLPVYSCECAIGFMGQRCEY 48 (58)
T ss_dssp SC-SSCEEEEEEETTEEEEEEEECTTEESSSSCE
T ss_pred CC-CCCEEeCCccCCCCCEEeECCCCCccCCCcc
Confidence 65 378998532 34579999999877777874
No 11
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Probab=42.06 E-value=8.3 Score=24.81 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=21.3
Q ss_pred cccCCceeccCC--CCCceeEeeCCCCCCCCCC
Q 021996 241 CEATGGTCGFGT--DGVRQLCMCGSVNSTSNCD 271 (304)
Q Consensus 241 C~~s~g~Cg~~~--~~~g~~C~C~~~~~~~~C~ 271 (304)
|. .+|+|.... ...+|.|.|+.+.....|.
T Consensus 16 C~-NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce 47 (52)
T 3ca7_A 16 CL-NDAHCFAVKIADLPVYSCECAIGFMGQRCE 47 (52)
T ss_dssp SC-TTCEEEEEEETTEEEEEEECCTTEESTTSC
T ss_pred CC-CCCEEecCccCCCCCEEEECCCCCcCCCCc
Confidence 65 378998631 2357999999976666775
No 12
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=40.24 E-value=24 Score=22.71 Aligned_cols=31 Identities=19% Similarity=0.421 Sum_probs=24.1
Q ss_pred ccccCCceeccCCCCCceeEeeCCCCCCCCCCC
Q 021996 240 ACEATGGTCGFGTDGVRQLCMCGSVNSTSNCDS 272 (304)
Q Consensus 240 ~C~~s~g~Cg~~~~~~g~~C~C~~~~~~~~C~~ 272 (304)
.|. ||+|.+-...+.+.|.|..+.....|..
T Consensus 19 yC~--nG~C~~i~~~~~~~C~C~~gy~G~RCe~ 49 (50)
T 2rnl_A 19 FCI--HGECKYIEHLEAVTCKCQQEYFGERCGE 49 (50)
T ss_dssp TCS--SSEEEEETTTTEEEEECCSSCCSSSCCC
T ss_pred cCC--CCEEEEecCCCCeeEECCCCcccccccc
Confidence 476 6799876666789999999877777763
No 13
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=36.81 E-value=2.9 Score=26.52 Aligned_cols=11 Identities=9% Similarity=0.078 Sum_probs=5.5
Q ss_pred Ccccccchhhh
Q 021996 278 SRISWPLSQIS 288 (304)
Q Consensus 278 ~~~~~~~~~~~ 288 (304)
++...++++++
T Consensus 7 s~~~aIA~gVV 17 (44)
T 2l2t_A 7 ARTPLIAAGVI 17 (44)
T ss_dssp CSSHHHHHHHH
T ss_pred CCcceEEEeeh
Confidence 44455555554
No 14
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Probab=34.50 E-value=25 Score=25.21 Aligned_cols=31 Identities=26% Similarity=0.526 Sum_probs=23.4
Q ss_pred ccccCCceeccCCCCCceeEeeCCCCCCCCCC
Q 021996 240 ACEATGGTCGFGTDGVRQLCMCGSVNSTSNCD 271 (304)
Q Consensus 240 ~C~~s~g~Cg~~~~~~g~~C~C~~~~~~~~C~ 271 (304)
.|.. +|.|.......+|.|.|+.|.....|.
T Consensus 55 pC~n-gg~C~~~~~~~~~~C~C~~G~~G~~Ce 85 (91)
T 1tpg_A 55 RCFN-GGTCQQALYFSDFVCQCPEGFAGKSCE 85 (91)
T ss_dssp CSCT-TCEEEEESSSSCEEEECCTTCBSSSCC
T ss_pred CCCC-CCEeecCCCCCCeEeECCCCCcCCcCC
Confidence 3653 789987654468999999987767776
No 15
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=32.33 E-value=3 Score=25.56 Aligned_cols=12 Identities=17% Similarity=0.014 Sum_probs=6.2
Q ss_pred ccccchhhhhhh
Q 021996 280 ISWPLSQISAGF 291 (304)
Q Consensus 280 ~~~~~~~~~~g~ 291 (304)
+.+++.++++|+
T Consensus 13 IAGiVvG~v~gv 24 (38)
T 2k1k_A 13 IVAVIFGLLLGA 24 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeeeehHHHHHH
Confidence 455555555553
No 16
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Probab=30.29 E-value=20 Score=24.11 Aligned_cols=30 Identities=20% Similarity=0.463 Sum_probs=21.7
Q ss_pred ccccCC--ceeccCCCCCceeEeeCCCCC-CCCCCC
Q 021996 240 ACEATG--GTCGFGTDGVRQLCMCGSVNS-TSNCDS 272 (304)
Q Consensus 240 ~C~~s~--g~Cg~~~~~~g~~C~C~~~~~-~~~C~~ 272 (304)
-|.. + |+|.+.. .+|.|.|+.|.. ...|..
T Consensus 18 PC~n-ga~gtC~~~~--g~y~C~C~~Gy~~G~~C~~ 50 (61)
T 2k2s_B 18 PCGP-EAAGTCKETN--SGYICRCNQGYRISLDGTG 50 (61)
T ss_dssp SSCS-SSCCEEEECS--SEEEEECCTTEEEEECSSS
T ss_pred CCcC-CCccccccCC--CceEeECCCCCccCCCCCC
Confidence 3653 4 7998743 479999999876 567754
No 17
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Probab=29.38 E-value=20 Score=22.97 Aligned_cols=31 Identities=23% Similarity=0.586 Sum_probs=23.4
Q ss_pred ccccCCceeccCCCCCceeEeeCCCCCCCCCCC
Q 021996 240 ACEATGGTCGFGTDGVRQLCMCGSVNSTSNCDS 272 (304)
Q Consensus 240 ~C~~s~g~Cg~~~~~~g~~C~C~~~~~~~~C~~ 272 (304)
-|.. |+|.+....+.+.|.|..+.....|..
T Consensus 15 yC~n--G~C~~~~~~~~~~C~C~~gy~G~RCe~ 45 (50)
T 1iox_A 15 YCIK--GRCRFVVAEQTPSCVCDEGYIGARCER 45 (50)
T ss_dssp SCTT--CCEEEETTTTEEEECCCTTEETTTTCE
T ss_pred cccC--CEEEeEcCCCCeEEECCCCcccCCCCe
Confidence 5774 799876666789999999876667763
No 18
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=25.89 E-value=37 Score=30.06 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=19.3
Q ss_pred eeccCCCCCceeEeeCCCC----CCCCCCCCCCC
Q 021996 247 TCGFGTDGVRQLCMCGSVN----STSNCDSVGSS 276 (304)
Q Consensus 247 ~Cg~~~~~~g~~C~C~~~~----~~~~C~~~~~~ 276 (304)
.|..+....+|.|.|++|. ..++|.++++-
T Consensus 280 ~C~~~~~~~~~~C~C~~g~~l~~d~~~c~~~~~~ 313 (318)
T 3sov_A 280 LCLMSPVKPFYQCACPTGVKLLENGKTCKDGNSH 313 (318)
T ss_dssp EEEECSSTTSEEEECSTTCCBCTTSSCBCC----
T ss_pred EEecCCCCCCeEEECCCCCEECCCCCCCCCCCcc
Confidence 4676665568999999963 35679887643
No 19
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Probab=24.68 E-value=46 Score=25.38 Aligned_cols=31 Identities=35% Similarity=0.665 Sum_probs=19.8
Q ss_pred cccCCceeccCCCCCceeEeeCCCCCCCCCCC
Q 021996 241 CEATGGTCGFGTDGVRQLCMCGSVNSTSNCDS 272 (304)
Q Consensus 241 C~~s~g~Cg~~~~~~g~~C~C~~~~~~~~C~~ 272 (304)
|. .+|+|.......+|.|.|+.|.....|..
T Consensus 8 C~-~~g~C~~~~~~g~~~C~C~~G~~G~~C~~ 38 (143)
T 4d90_A 8 CE-NGGICLPGLADGSFSCECPDGFTDPNCSS 38 (143)
T ss_dssp CG-GGCEEEC-----CCEEECCTTCCTTTTCS
T ss_pred CC-CCCEeeCCCCCCCEEeECCCCCCCCCCcc
Confidence 54 37899876544579999999876556654
No 20
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1
Probab=24.26 E-value=23 Score=25.25 Aligned_cols=30 Identities=20% Similarity=0.536 Sum_probs=23.0
Q ss_pred ccccCCceeccCCCCCceeEeeCCCCCCCCCC
Q 021996 240 ACEATGGTCGFGTDGVRQLCMCGSVNSTSNCD 271 (304)
Q Consensus 240 ~C~~s~g~Cg~~~~~~g~~C~C~~~~~~~~C~ 271 (304)
.|. ||.|.+....+.+.|.|..+.....|.
T Consensus 47 yCl--nG~C~~i~~~~~~~C~C~~GYtG~RCE 76 (79)
T 1xdt_R 47 FCI--HGECKYVKELRAPSCICHPGYHGERCH 76 (79)
T ss_dssp CCS--SEEECCBGGGTBCCEEECTTEESTTCC
T ss_pred cCC--CCEeeeecCCCCeEEEcCCCccccccc
Confidence 687 469977655578999999987666775
No 21
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=23.70 E-value=8.9 Score=23.41 Aligned_cols=13 Identities=8% Similarity=0.051 Sum_probs=6.4
Q ss_pred cccccchhhhhhh
Q 021996 279 RISWPLSQISAGF 291 (304)
Q Consensus 279 ~~~~~~~~~~~g~ 291 (304)
+..+++++++.|+
T Consensus 11 ~~~~I~~~vv~Gv 23 (41)
T 2k9y_A 11 GNLAVIGGVAVGV 23 (41)
T ss_dssp SSTHHHHHHHHHH
T ss_pred ceEEEEeehhHHH
Confidence 3455555554443
Done!