Query 021997
Match_columns 304
No_of_seqs 230 out of 1509
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 07:13:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021997.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021997hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 5.1E-51 1.1E-55 380.9 28.9 232 55-303 64-331 (365)
2 KOG0697 Protein phosphatase 1B 100.0 2.9E-51 6.2E-56 355.1 19.8 232 52-303 18-292 (379)
3 KOG0698 Serine/threonine prote 100.0 4.3E-48 9.3E-53 358.8 26.7 233 56-303 40-305 (330)
4 PTZ00224 protein phosphatase 2 100.0 2.4E-47 5.1E-52 357.4 28.9 226 52-303 18-272 (381)
5 PF00481 PP2C: Protein phospha 100.0 4.1E-48 9E-53 347.3 13.8 221 57-294 1-254 (254)
6 KOG0699 Serine/threonine prote 100.0 1.2E-45 2.6E-50 330.1 18.2 166 124-304 327-505 (542)
7 COG0631 PTC1 Serine/threonine 100.0 6.7E-42 1.4E-46 307.8 19.7 215 53-303 5-253 (262)
8 KOG0700 Protein phosphatase 2C 100.0 3.1E-38 6.7E-43 288.6 17.0 191 87-286 96-376 (390)
9 smart00332 PP2Cc Serine/threon 100.0 2.4E-36 5.3E-41 269.7 27.1 220 54-299 4-255 (255)
10 cd00143 PP2Cc Serine/threonine 100.0 2.7E-36 5.9E-41 268.6 27.0 220 57-301 2-254 (254)
11 PRK14559 putative protein seri 100.0 1.1E-36 2.3E-41 300.4 22.2 223 54-303 373-636 (645)
12 KOG1323 Serine/threonine phosp 100.0 6.9E-28 1.5E-32 214.3 16.5 228 58-302 107-487 (493)
13 KOG1379 Serine/threonine prote 99.9 1E-20 2.2E-25 168.5 18.9 186 68-300 89-329 (330)
14 KOG0618 Serine/threonine phosp 99.9 9.8E-22 2.1E-26 195.0 13.3 227 51-303 517-773 (1081)
15 PF13672 PP2C_2: Protein phosp 99.7 1.1E-17 2.3E-22 145.8 11.3 156 61-268 3-196 (212)
16 smart00331 PP2C_SIG Sigma fact 99.7 1.2E-15 2.6E-20 130.9 17.4 157 68-285 15-192 (193)
17 TIGR02865 spore_II_E stage II 99.5 3.4E-13 7.3E-18 137.7 18.1 186 54-301 550-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.3 3.1E-10 6.7E-15 97.0 18.0 159 90-302 4-193 (193)
19 COG2208 RsbU Serine phosphatas 97.9 0.00096 2.1E-08 63.1 18.5 162 89-302 174-366 (367)
20 COG3700 AphA Acid phosphatase 69.3 6 0.00013 33.5 3.5 45 241-285 72-127 (237)
21 PF09436 DUF2016: Domain of un 43.0 16 0.00034 26.2 1.5 20 237-256 24-43 (72)
22 COG0216 PrfA Protein chain rel 39.9 1E+02 0.0022 28.9 6.5 91 86-180 109-252 (363)
23 PRK05589 peptide chain release 37.8 2E+02 0.0044 26.8 8.3 90 88-183 84-226 (325)
24 TIGR00020 prfB peptide chain r 37.3 2.6E+02 0.0056 26.6 9.1 28 89-116 124-151 (364)
25 PRK07342 peptide chain release 30.8 3.4E+02 0.0074 25.5 8.6 27 89-115 88-114 (339)
26 TIGR00525 folB dihydroneopteri 29.6 2.3E+02 0.0049 21.7 6.4 57 245-301 41-99 (116)
27 PRK00578 prfB peptide chain re 29.2 3E+02 0.0065 26.2 8.1 29 88-116 123-151 (367)
28 cd00534 DHNA_DHNTPE Dihydroneo 27.5 2E+02 0.0044 22.1 5.7 54 245-298 42-97 (118)
29 TIGR00019 prfA peptide chain r 27.0 5.4E+02 0.012 24.4 9.3 28 89-116 111-138 (360)
30 PF02152 FolB: Dihydroneopteri 26.7 2.3E+02 0.005 21.4 5.9 53 247-299 41-95 (113)
31 PF14014 DUF4230: Protein of u 26.6 2.7E+02 0.0058 22.4 6.6 41 226-266 75-115 (157)
32 KOG2726 Mitochondrial polypept 26.0 3.7E+02 0.0081 25.7 8.0 87 90-180 137-277 (386)
33 PRK08179 prfH peptide chain re 26.0 2E+02 0.0042 24.9 5.7 25 92-116 3-27 (200)
34 PF05402 PqqD: Coenzyme PQQ sy 24.8 1.8E+02 0.0039 19.7 4.5 25 257-281 16-40 (68)
35 smart00331 PP2C_SIG Sigma fact 24.1 4E+02 0.0087 21.8 9.5 64 238-302 27-95 (193)
36 PF12095 DUF3571: Protein of u 23.9 2.7E+02 0.0058 20.5 5.2 48 238-285 8-65 (83)
37 PF07228 SpoIIE: Stage II spor 23.9 3.7E+02 0.008 21.9 7.2 65 239-303 2-71 (193)
38 PRK08787 peptide chain release 23.5 4.6E+02 0.0099 24.4 8.0 36 142-183 171-206 (313)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=5.1e-51 Score=380.86 Aligned_cols=232 Identities=38% Similarity=0.668 Sum_probs=201.4
Q ss_pred eeEEEEecccCCCCCCCceEEEecCCCCC----CCCCCcceEEEEEcCCCCHHHHHHHHHHHHHHHHhcC-CC-------
Q 021997 55 EIEADAAEDKGSRHTMEDASVVLVDASSD----SPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAG-LP------- 122 (304)
Q Consensus 55 ~~~~g~~s~~G~R~~nED~~~~~~~~~~~----~~~~~~~~l~~V~DGhGG~~~s~~~~~~l~~~l~~~~-~~------- 122 (304)
.+.++..+++|.|+.|||++++..++... .++.....||||||||||+.+++|+++.|++.|.+.. .+
T Consensus 64 ~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~al 143 (365)
T PLN03145 64 VVRSGAWADIGSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFPREIEKVV 143 (365)
T ss_pred ceEEEEEccccCCCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 46789999999999999999876543111 1122346899999999999999999999988775421 10
Q ss_pred ------------------CCCCCCccEEEEEEeCCeEEEEeeCCcEEEEEeccccCCCCCCccccCccceEEeCCCCCCC
Q 021997 123 ------------------RGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAI 184 (304)
Q Consensus 123 ------------------~~~~~GtT~~~~~i~~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~LT~dH~~~ 184 (304)
....+|||++++++.++++||||+||||+|+++++ .+++||+||+|.
T Consensus 144 ~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g---------------~~~~LT~DH~~~ 208 (365)
T PLN03145 144 SSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRG---------------KAIEMSRDHKPM 208 (365)
T ss_pred HHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCC---------------eEEEecCCCCCC
Confidence 02458999999999999999999999999999998 999999999999
Q ss_pred ChHHHHHHHHcCCeeeeCCccccceecccccCCccCccC------CeeeeceeEEEEecCCCeEEEEEcCCCccccChHH
Q 021997 185 YPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKF------GVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSD 258 (304)
Q Consensus 185 ~~~e~~ri~~~gg~v~~~~r~~g~l~~tRalGd~~~k~~------~v~~~P~i~~~~l~~~d~~liLaSDGl~d~l~~~e 258 (304)
++.|+.||.+.||.+. .++++|.+++||+|||+.+|.. +++++|+|..+++.++|.|||||||||||+|++++
T Consensus 209 ~~~E~~RI~~~Gg~v~-~g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee 287 (365)
T PLN03145 209 CSKERKRIEASGGYVY-DGYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQN 287 (365)
T ss_pred CHHHHHHHHHcCCcee-cceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHH
Confidence 9999999999999986 5688999999999999988743 47899999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 021997 259 AVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 303 (304)
Q Consensus 259 i~~iv~~~~~~~~~~~~~a~~lv~~A~~~~~~~DNiTvivv~l~~ 303 (304)
++++++..+....+|+.+|+.|++.|+ .+++.||||||||+|++
T Consensus 288 ~v~~i~~~l~~~~~p~~aa~~Lv~~Al-~rgs~DNITvIVV~l~~ 331 (365)
T PLN03145 288 AVDFARRRLQEHNDPVMCSKELVDEAL-KRKSGDNLAVVVVCFQS 331 (365)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH-hCCCCCCEEEEEEEeec
Confidence 999998877666689999999999998 69999999999999974
No 2
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-51 Score=355.08 Aligned_cols=232 Identities=31% Similarity=0.560 Sum_probs=208.7
Q ss_pred cceeeEEEEecccCCCCCCCceEEEecCCCCCCCCCCcceEEEEEcCCCCHHHHHHHHHHHHHHHHhcCC-------C--
Q 021997 52 DFVEIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGL-------P-- 122 (304)
Q Consensus 52 ~~~~~~~g~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~s~~~~~~l~~~l~~~~~-------~-- 122 (304)
.-..+.||.+|++|||-.|||++.+...+.. +-..|.+|+|||||.|+.+|.+|+++|...+++..- .
T Consensus 18 ~GNglryg~SSMQGWR~eMEDah~A~~~l~~---~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv 94 (379)
T KOG0697|consen 18 EGNGLRYGVSSMQGWRVEMEDAHTAVAGLPS---PLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSV 94 (379)
T ss_pred cCCceeeeeccccchhhhhhhhhhhhhcCCC---CccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcH
Confidence 3467899999999999999999998765532 335789999999999999999999999988765310 0
Q ss_pred --------C------------------CCCCCccEEEEEEeCCeEEEEeeCCcEEEEEeccccCCCCCCccccCccceEE
Q 021997 123 --------R------------------GWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIV 176 (304)
Q Consensus 123 --------~------------------~~~~GtT~~~~~i~~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~ 176 (304)
. ..++|||++++++...++|++|+||||++++|++ ..+.
T Consensus 95 ~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng---------------~~~f 159 (379)
T KOG0697|consen 95 ENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNG---------------EVVF 159 (379)
T ss_pred HHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCC---------------ceEE
Confidence 0 2358999999999999999999999999999999 9999
Q ss_pred eCCCCCCCChHHHHHHHHcCCeeeeCCccccceecccccCCccCccC--------CeeeeceeEEEEecCCCeEEEEEcC
Q 021997 177 VTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKF--------GVVATPDIHSFEVTERDHFIILGCD 248 (304)
Q Consensus 177 LT~dH~~~~~~e~~ri~~~gg~v~~~~r~~g~l~~tRalGd~~~k~~--------~v~~~P~i~~~~l~~~d~~liLaSD 248 (304)
-|.||+|..|.|++||+.+||.|- -.|++|.|++||||||+.||.. -|+++|+|+.......|+|||||||
T Consensus 160 ~TqDHKP~~p~EkeRIqnAGGSVM-IqRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACD 238 (379)
T KOG0697|consen 160 STQDHKPYLPKEKERIQNAGGSVM-IQRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACD 238 (379)
T ss_pred eccCCCCCChHHHHHHhcCCCeEE-EEEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEcc
Confidence 999999999999999999999996 5699999999999999999964 3889999999999888889999999
Q ss_pred CCccccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 021997 249 GLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 303 (304)
Q Consensus 249 Gl~d~l~~~ei~~iv~~~~~~~~~~~~~a~~lv~~A~~~~~~~DNiTvivv~l~~ 303 (304)
|+||+|+++|+++++++.+.-..+...+|..+++.++ -.|+.||+|+|+|.|+.
T Consensus 239 GIwDVMtneelcefv~sRl~Vt~dL~~vcn~VvDtCL-hKGSRDNMsivlvcfp~ 292 (379)
T KOG0697|consen 239 GIWDVMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCL-HKGSRDNMSIVLVCFPG 292 (379)
T ss_pred chhhhcccHHHHHHHHhhheecccHHHHHHHHHHHHH-hccCccCceEEEEecCC
Confidence 9999999999999999998877889999999999999 59999999999999964
No 3
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-48 Score=358.80 Aligned_cols=233 Identities=37% Similarity=0.562 Sum_probs=201.8
Q ss_pred eEEEEecccCCCCCCCceEEEecCCCCCCCCCC-cceEEEEEcCCCCHHHHHHHHHHHHHHHHhcCC-------------
Q 021997 56 IEADAAEDKGSRHTMEDASVVLVDASSDSPPNL-RCAHFAIFDGHGGRLAAEYAQKRLHANVISAGL------------- 121 (304)
Q Consensus 56 ~~~g~~s~~G~R~~nED~~~~~~~~~~~~~~~~-~~~l~~V~DGhGG~~~s~~~~~~l~~~l~~~~~------------- 121 (304)
...+.++.+|+|+.|||++.............. ..++|||||||||+.+|+|+.++|+..+.++..
T Consensus 40 ~~~~~~~~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~a~~ 119 (330)
T KOG0698|consen 40 RLGSLLSIRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKDALR 119 (330)
T ss_pred cceEEEecCCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHH
Confidence 345666999999999999998776543222333 689999999999999999999999988764211
Q ss_pred ---C---------C---CCCCCccEEEEEEeCC-eEEEEeeCCcEEEEEeccccCCCCCCccccCccceEEeCCCCCCCC
Q 021997 122 ---P---------R---GWQDGATAVCIWILGR-TVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIY 185 (304)
Q Consensus 122 ---~---------~---~~~~GtT~~~~~i~~~-~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~LT~dH~~~~ 185 (304)
. . ...+|||++++++... +|||||+||||++|++.++ .+++||.||+|..
T Consensus 120 ~~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~--------------~a~~Ls~DHkP~~ 185 (330)
T KOG0698|consen 120 RAFLTKTDSEFLEKREDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGG--------------VAVQLSVDHKPDR 185 (330)
T ss_pred HHHHHHHHHHHHhhccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCC--------------eeeeCCCCCCCCc
Confidence 0 0 2678899888888855 9999999999999998752 7999999999999
Q ss_pred hHHHHHHHHcCCeeeeC---CccccceecccccCCccCccCCeeeeceeEEEEecCCCeEEEEEcCCCccccChHHHHHH
Q 021997 186 PQERARIQKSGGTVSSN---GRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEF 262 (304)
Q Consensus 186 ~~e~~ri~~~gg~v~~~---~r~~g~l~~tRalGd~~~k~~~v~~~P~i~~~~l~~~d~~liLaSDGl~d~l~~~ei~~i 262 (304)
+.|+.||+++||++... .|+.|.|++||+|||+.+|.++++++|++....+...|+|||||||||||+|+++|++++
T Consensus 186 ~~E~~RI~~~GG~v~~~~~~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~ 265 (330)
T KOG0698|consen 186 EDERERIEAAGGRVSNWGGVWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDL 265 (330)
T ss_pred HHHHHHHHHcCCEEEEcCCcceEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHH
Confidence 99999999999999965 399999999999999999977799999999999999899999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 021997 263 VQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 303 (304)
Q Consensus 263 v~~~~~~~~~~~~~a~~lv~~A~~~~~~~DNiTvivv~l~~ 303 (304)
|+........+..++..|...|+ .+++.||||||||.|.+
T Consensus 266 V~~~~~~~~~~~~a~~~l~~~a~-~~~s~DnitvvvV~l~~ 305 (330)
T KOG0698|consen 266 VRDELASISSPLAAAKLLATEAL-SRGSKDNITVVVVRLKS 305 (330)
T ss_pred HHHHhhccccHHHHHHHHHHHHh-hcCCCCCeEEEEEEecC
Confidence 99976444568899999999997 69999999999999975
No 4
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=2.4e-47 Score=357.43 Aligned_cols=226 Identities=33% Similarity=0.553 Sum_probs=194.6
Q ss_pred cceeeEEEEecccCCCCCCCceEEEecCCCCCCCCCCcceEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCC---------
Q 021997 52 DFVEIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLP--------- 122 (304)
Q Consensus 52 ~~~~~~~g~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~s~~~~~~l~~~l~~~~~~--------- 122 (304)
....+.+|..+++|.|++|||++++..+ ..+.||||||||||..+|+|+++.|+..+.+....
T Consensus 18 ~~~~~~~g~~s~~G~R~~nED~~~v~~~--------~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~~~~~~~l~~a 89 (381)
T PTZ00224 18 GNSIFRCASACVNGYRESMEDAHLLYLT--------DDWGFFGVFDGHVNDECSQYLARAWPQALEKEPEPMTDERMEEL 89 (381)
T ss_pred CCccEEEEEEeCCCCCCCCCCeeEeccC--------CCceEEEEEeCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 3467889999999999999999886432 13468999999999999999999998776432111
Q ss_pred ----------CCCCCCccEEEEEEe-CCeEEEEeeCCcEEEEEeccccCCCCCCccccCccceEEeCCCCCCCChHHHHH
Q 021997 123 ----------RGWQDGATAVCIWIL-GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERAR 191 (304)
Q Consensus 123 ----------~~~~~GtT~~~~~i~-~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~LT~dH~~~~~~e~~r 191 (304)
....+|||++++++. +.++|||||||||+|+++++ ++++||+||++.++.|+.|
T Consensus 90 ~~~~d~~i~~~~~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g---------------~~~~LT~DH~~~~~~E~~R 154 (381)
T PTZ00224 90 CLEIDEEWMDSGREGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDG---------------KLVFATEDHKPNNPGERQR 154 (381)
T ss_pred HHHHHHHHHhcccCCCCeEEEEEEEECCEEEEEEcccceEEEEECC---------------EEEEcccCCCCCCHHHHhH
Confidence 123579999988776 57999999999999999998 9999999999999999999
Q ss_pred HHHcCCeeeeCCccccceecccccCCccCccC--------CeeeeceeEEEEecCCCeEEEEEcCCCcc-ccChHHHHHH
Q 021997 192 IQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKF--------GVVATPDIHSFEVTERDHFIILGCDGLWG-VFGPSDAVEF 262 (304)
Q Consensus 192 i~~~gg~v~~~~r~~g~l~~tRalGd~~~k~~--------~v~~~P~i~~~~l~~~d~~liLaSDGl~d-~l~~~ei~~i 262 (304)
|.+.||.+. .+|+.|.+++||+|||..+|.. .++++|+|..+.+.++| ||||||||||| +++++|++++
T Consensus 155 I~~~gg~v~-~~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~~D-~llLaSDGL~d~~ls~eEi~~i 232 (381)
T PTZ00224 155 IEACGGRVV-SNRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQSND-FIILACDGVFEGNFSNEEVVAF 232 (381)
T ss_pred HHHccCEec-cccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCCCC-EEEEECCCcCcCccCHHHHHHH
Confidence 999999997 4689999999999999876644 36789999999998777 99999999999 8999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 021997 263 VQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 303 (304)
Q Consensus 263 v~~~~~~~~~~~~~a~~lv~~A~~~~~~~DNiTvivv~l~~ 303 (304)
+........+++.+|+.|++.|+ .+|+.||||||||+|..
T Consensus 233 v~~~l~~~~~~~~aA~~Lv~~A~-~rGs~DNITvIvV~~~~ 272 (381)
T PTZ00224 233 VKEQLETCDDLAVVAGRVCDEAI-RRGSKDNISCLIVQLKD 272 (381)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHH-hcCCCCCEEEEEEEeeC
Confidence 98765555678999999999998 69999999999999964
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=4.1e-48 Score=347.28 Aligned_cols=221 Identities=40% Similarity=0.649 Sum_probs=186.6
Q ss_pred EEEEecccCCCCCCCceEEEecCCCCCCCCCCcceEEEEEcCCCCHHHHHHHHHHHHHHHHhc----------------C
Q 021997 57 EADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISA----------------G 120 (304)
Q Consensus 57 ~~g~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~s~~~~~~l~~~l~~~----------------~ 120 (304)
.+|+.+.+|+|+.|||++++..+.... .......+|+|||||||..+++|+++.++..+.+. .
T Consensus 1 ~~~~~~~~g~r~~~eD~~~~~~~~~~~-~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~ 79 (254)
T PF00481_consen 1 DYGVSSMQGVRKEMEDRHLIIQNFNSN-SGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAF 79 (254)
T ss_dssp EEEEEEEECTSSSHHEEEEEEEEETCC-TTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcCeecCCCCCCcccCEEEEecCcccc-CCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhccccee
Confidence 478899999999999999998754222 34567899999999999999999999998644221 0
Q ss_pred CC-------------CCCCCCccEEEEEEeCCeEEEEeeCCcEEEEEeccccCCCCCCccccCccceE-EeCCCCCCCCh
Q 021997 121 LP-------------RGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAI-VVTRVHKAIYP 186 (304)
Q Consensus 121 ~~-------------~~~~~GtT~~~~~i~~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~-~LT~dH~~~~~ 186 (304)
.. ....+|||++++++.++++|+||+||||+|+++.+ ... +||+||+|.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~---------------~~~~~Lt~dH~~~~~ 144 (254)
T PF00481_consen 80 LAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNG---------------GIIKQLTRDHKPSNP 144 (254)
T ss_dssp HHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETT---------------EEEEESS---STTSH
T ss_pred eecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeecc---------------ccccccccccccchh
Confidence 00 24689999999999999999999999999999999 676 99999999999
Q ss_pred HHHHHHHHcCCeeeeCCccccceecccccCCccCcc---CCeeeeceeEEEEecCCCeEEEEEcCCCccccChHHHHHHH
Q 021997 187 QERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKK---FGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFV 263 (304)
Q Consensus 187 ~e~~ri~~~gg~v~~~~r~~g~l~~tRalGd~~~k~---~~v~~~P~i~~~~l~~~d~~liLaSDGl~d~l~~~ei~~iv 263 (304)
.|+.||+++||.+...+|+.|.|++||+|||..+|+ ++|+++|+|..+++.++|.|||||||||||+++++|+++++
T Consensus 145 ~E~~RI~~~gg~v~~~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v 224 (254)
T PF00481_consen 145 DERERIRKAGGRVSENGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIV 224 (254)
T ss_dssp HHHHHHHHTT-GEEETEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHH
T ss_pred hccceeeccccccccchhhhhccccccccccccccccccceeeeecccccccccccceEEEEEcccccccCCHHHHHHHH
Confidence 999999999999998889999999999999999998 78999999999999999889999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCCCCCc
Q 021997 264 QKLLKEGLSVTAVSRRLVREAVLERRCKDNC 294 (304)
Q Consensus 264 ~~~~~~~~~~~~~a~~lv~~A~~~~~~~DNi 294 (304)
+.....+..|+.+|+.|++.|+ ++++.|||
T Consensus 225 ~~~~~~~~~~~~~a~~L~~~A~-~~gs~DNi 254 (254)
T PF00481_consen 225 RESLNSGRSPQEAAEKLVDEAI-ARGSKDNI 254 (254)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHH-HTTHHSHE
T ss_pred HHHHhcCCcHHHHHHHHHHHHH-hcCCCCCC
Confidence 9988755568999999999998 69999997
No 6
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-45 Score=330.14 Aligned_cols=166 Identities=36% Similarity=0.625 Sum_probs=154.7
Q ss_pred CCCCCccEEEEEEeCCeEEEEeeCCcEEEEEeccccCCCCCCccccCccceEEeCCCCCCCChHHHHHHHHcCCeeeeCC
Q 021997 124 GWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNG 203 (304)
Q Consensus 124 ~~~~GtT~~~~~i~~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~LT~dH~~~~~~e~~ri~~~gg~v~~~~ 203 (304)
...+|||++++++.+++|||||.||||+|++|.+ +++-++.||+|..+.|..||..+||.|.-++
T Consensus 327 G~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~G---------------kAvdmS~DHKPEDevE~~RI~~AGG~vtlDG 391 (542)
T KOG0699|consen 327 GEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNG---------------KAVDMSVDHKPEDEVETNRIHAAGGQVTLDG 391 (542)
T ss_pred CCCCCceEEEEEecCceEEEecCCCcceEEecCC---------------ceeecccCCCcccHHHHHHHHhcCCeEeecc
Confidence 3467999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ccccceecccccCCccCccC--------CeeeeceeEEEEecCCCeEEEEEcCCCccccChHHHHHHHHHHHHcCCCHHH
Q 021997 204 RLQGRLEVSRAFGDRQFKKF--------GVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTA 275 (304)
Q Consensus 204 r~~g~l~~tRalGd~~~k~~--------~v~~~P~i~~~~l~~~d~~liLaSDGl~d~l~~~ei~~iv~~~~~~~~~~~~ 275 (304)
|++|.|.++|||||+.||.. -|++-|+|....|++.|+|+||||||||++|+.++++++|+..+..+.....
T Consensus 392 RVNGGLNLSRA~GDHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~ 471 (542)
T KOG0699|consen 392 RVNGGLNLSRAFGDHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSE 471 (542)
T ss_pred eecCccchhhhhhhhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHH
Confidence 99999999999999999963 3789999999999999999999999999999999999999999988888999
Q ss_pred HHHHHHHHHHHh-----CCCCCCcEEEEEEecCC
Q 021997 276 VSRRLVREAVLE-----RRCKDNCTAIVIIFRHK 304 (304)
Q Consensus 276 ~a~~lv~~A~~~-----~~~~DNiTvivv~l~~~ 304 (304)
+|+.|++.++.. ....||+|||++.|+++
T Consensus 472 iceeL~D~CLAp~T~GDGTGCDNMT~ii~~Fkrk 505 (542)
T KOG0699|consen 472 ICEELCDACLAPSTDGDGTGCDNMTVIITTFKRK 505 (542)
T ss_pred HHHHHHHhhcCCCCCCCCcCCCcceEEEEEeccc
Confidence 999999999842 13689999999999754
No 7
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=6.7e-42 Score=307.80 Aligned_cols=215 Identities=28% Similarity=0.406 Sum_probs=180.2
Q ss_pred ceeeEEEEecccC-CCCCCCceEEEecCCCCCCCCCCcceEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCC---------
Q 021997 53 FVEIEADAAEDKG-SRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLP--------- 122 (304)
Q Consensus 53 ~~~~~~g~~s~~G-~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~s~~~~~~l~~~l~~~~~~--------- 122 (304)
.+.+.++..++.| .|..|||++.+..+. .+.. ..||+|||||||+.+++++++.+.+.|.+....
T Consensus 5 ~~~~~~~~~s~~g~~R~~NeD~~~~~~~~----~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~ 79 (262)
T COG0631 5 ILSLKVAGLSDVGTVRKHNEDAFLIKPNE----NGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNES 79 (262)
T ss_pred cceeeeeeeccCCCccCCCCcceeecccc----CCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 4567778888888 588899999987532 2223 579999999999999999998888776543110
Q ss_pred --C----------------------CCCCCccEEEEEEeCCeEEEEeeCCcEEEEEeccccCCCCCCccccCccceEEeC
Q 021997 123 --R----------------------GWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVT 178 (304)
Q Consensus 123 --~----------------------~~~~GtT~~~~~i~~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~LT 178 (304)
. ...+|||++++++.++++|+|||||||+|+++++ .+++||
T Consensus 80 ~~~~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~---------------~~~~lT 144 (262)
T COG0631 80 LEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDG---------------ELKQLT 144 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCC---------------ceEEec
Confidence 0 3678999999999999999999999999999999 999999
Q ss_pred CCCCCCChHHHHHHHHcCCeeeeCCccccceecccccCCccCccCCeeeeceeEEEEecCCCeEEEEEcCCCccccChHH
Q 021997 179 RVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSD 258 (304)
Q Consensus 179 ~dH~~~~~~e~~ri~~~gg~v~~~~r~~g~l~~tRalGd~~~k~~~v~~~P~i~~~~l~~~d~~liLaSDGl~d~l~~~e 258 (304)
.||++.++.++.++...++..... | ..++|||||+... .+|++....+.+++ |+|||||||||.+++++
T Consensus 145 ~DH~~~~~~~~~~~~~~~~~~~~~-~---~~~ltralG~~~~------~~p~~~~~~~~~~d-~llL~SDGl~d~v~~~~ 213 (262)
T COG0631 145 EDHSLVNRLEQRGIITPEEARSHP-R---RNALTRALGDFDL------LEPDITELELEPGD-FLLLCSDGLWDVVSDDE 213 (262)
T ss_pred cCCcHHHHHHHhcCCCHHHHHhCc-c---chhhhhhcCCCcc------cceeEEEEEcCCCC-EEEEECCCCccCcCHHH
Confidence 999999999988876665555432 2 2389999998765 58999999998885 99999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 021997 259 AVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 303 (304)
Q Consensus 259 i~~iv~~~~~~~~~~~~~a~~lv~~A~~~~~~~DNiTvivv~l~~ 303 (304)
++++++. ..+++.++++|++.|+ .+++.||+|+++|.+..
T Consensus 214 i~~il~~----~~~~~~~~~~li~~a~-~~g~~DNiT~ilv~~~~ 253 (262)
T COG0631 214 IVDILKN----SETPQEAADKLIELAL-EGGGPDNITVVLVRLNG 253 (262)
T ss_pred HHHHHhc----CCCHHHHHHHHHHHHH-hcCCCCceEEEEEEeec
Confidence 9999976 4479999999999998 59999999999999753
No 8
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-38 Score=288.59 Aligned_cols=191 Identities=30% Similarity=0.411 Sum_probs=162.0
Q ss_pred CCcceEEEEEcCCCCHHHHHHHHHHHHHHHHhcCC---------------------------------C-C---------
Q 021997 87 NLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGL---------------------------------P-R--------- 123 (304)
Q Consensus 87 ~~~~~l~~V~DGhGG~~~s~~~~~~l~~~l~~~~~---------------------------------~-~--------- 123 (304)
...+.|+||||||||.++++|++++|+.++..+.. + .
T Consensus 96 ~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~~al~~ 175 (390)
T KOG0700|consen 96 ENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSADQRHGDVLEALSK 175 (390)
T ss_pred cCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccccCccchhHHHHHHH
Confidence 45778999999999999999999999988761100 1 1
Q ss_pred ----------------------CCCCCccEEEEEEeCCeEEEEeeCCcEEEEEeccccCCCCCCccccCccceEEeCCCC
Q 021997 124 ----------------------GWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVH 181 (304)
Q Consensus 124 ----------------------~~~~GtT~~~~~i~~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~LT~dH 181 (304)
...+|+|+++.++.+..|||||+|||||+|++... ....|.++|||.||
T Consensus 176 Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~---------~~~~~~A~qLS~dH 246 (390)
T KOG0700|consen 176 AFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVEN---------NGSWLVAVQLSTDH 246 (390)
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecC---------CCCeEEEEecChhh
Confidence 23579999999999999999999999999988761 12236999999999
Q ss_pred CCCChHHHHHHHHcCCe-----eeeCCccccceecccccCCccCcc--------------------CCeeeeceeEEEEe
Q 021997 182 KAIYPQERARIQKSGGT-----VSSNGRLQGRLEVSRAFGDRQFKK--------------------FGVVATPDIHSFEV 236 (304)
Q Consensus 182 ~~~~~~e~~ri~~~gg~-----v~~~~r~~g~l~~tRalGd~~~k~--------------------~~v~~~P~i~~~~l 236 (304)
+..++.|+.||+..+.. +...+|+.|.|.+||||||..+|. |.++++|+|+.++|
T Consensus 247 n~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL 326 (390)
T KOG0700|consen 247 NASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKL 326 (390)
T ss_pred ccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEc
Confidence 99999999999998862 223359999999999999999994 36899999999999
Q ss_pred cCCCeEEEEEcCCCccccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 021997 237 TERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVL 286 (304)
Q Consensus 237 ~~~d~~liLaSDGl~d~l~~~ei~~iv~~~~~~~~~~~~~a~~lv~~A~~ 286 (304)
.++|.|||||||||||+|+++|++++|..+.....+-+.+|+.||+.|+.
T Consensus 327 ~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~ 376 (390)
T KOG0700|consen 327 TPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALG 376 (390)
T ss_pred CCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999766433446789999999884
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=2.4e-36 Score=269.67 Aligned_cols=220 Identities=39% Similarity=0.595 Sum_probs=187.3
Q ss_pred eeeEEEEecccCCCCCCCceEEEecCCCCCCCCCCcceEEEEEcCCCCHHHHHHHHHHHHHHHHhcCC--------CC--
Q 021997 54 VEIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGL--------PR-- 123 (304)
Q Consensus 54 ~~~~~g~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~s~~~~~~l~~~l~~~~~--------~~-- 123 (304)
..+.++..+.+|.|..|||++++..+. .....+|+|||||||+.+|+++++.+...+..... ..
T Consensus 4 ~~~~~~~~~~~~~r~~neD~~~~~~~~------~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (255)
T smart00332 4 LGLRYGLSSMQGVRKPMEDAHVITPDL------SDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEA 77 (255)
T ss_pred CceeEEEecCCCCCCCCcceEEEeccC------CCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHH
Confidence 346677788889999999999886531 13568999999999999999999999877654311 00
Q ss_pred ---------------------CCCCCccEEEEEEeCCeEEEEeeCCcEEEEEeccccCCCCCCccccCccceEEeCCCCC
Q 021997 124 ---------------------GWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHK 182 (304)
Q Consensus 124 ---------------------~~~~GtT~~~~~i~~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~LT~dH~ 182 (304)
...+|||++++++..+++|++|+||||+|+++++ .+.+||.||+
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~---------------~~~~lt~dh~ 142 (255)
T smart00332 78 LRKAFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNG---------------KAVQLTEDHK 142 (255)
T ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCC---------------ceeEcCCCCC
Confidence 1467999999999999999999999999999998 8999999999
Q ss_pred CCChHHHHHHHHcCCeeeeCCccccceecccccCCccCccCCeeeeceeEEEEe-cCCCeEEEEEcCCCccccChHHHHH
Q 021997 183 AIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEV-TERDHFIILGCDGLWGVFGPSDAVE 261 (304)
Q Consensus 183 ~~~~~e~~ri~~~gg~v~~~~r~~g~l~~tRalGd~~~k~~~v~~~P~i~~~~l-~~~d~~liLaSDGl~d~l~~~ei~~ 261 (304)
+..+.|..||.+.++.+.. ++.++...+||++|+..+|+ ++.++|++...++ .++| +||||||||||+++++++.+
T Consensus 143 ~~~~~~~~~i~~~~~~~~~-~~~~~~~~lt~~~g~~~~~~-~i~~~p~~~~~~~~~~~d-~ill~SDGv~~~l~~~~i~~ 219 (255)
T smart00332 143 PSNEDERARIEAAGGFVIN-GRVNGVLALSRAIGDFFLKP-YVSAEPDVTVVELTEKDD-FLILASDGLWDVLSNQEVVD 219 (255)
T ss_pred CcCHHHHHHHHHcCCEEEC-CeECCeEecccccCCHhhcC-CeEeeeEEEEEEecCCCc-EEEEECCccccCCCHHHHHH
Confidence 9999999999999998864 47777899999999988885 4899999999997 5555 99999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEE
Q 021997 262 FVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVI 299 (304)
Q Consensus 262 iv~~~~~~~~~~~~~a~~lv~~A~~~~~~~DNiTvivv 299 (304)
++...... .++..+|+.|++.|. .++..||+|+||+
T Consensus 220 ~~~~~~~~-~~~~~~~~~l~~~a~-~~~~~Dn~T~ivv 255 (255)
T smart00332 220 IVRKHLSK-SDPEEAAKRLIDLAL-ARGSKDNITVIVV 255 (255)
T ss_pred HHHHHhhc-CCHHHHHHHHHHHHH-HcCCCCCeEEEEC
Confidence 99876532 248999999999997 5899999999985
No 10
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=2.7e-36 Score=268.58 Aligned_cols=220 Identities=39% Similarity=0.635 Sum_probs=185.0
Q ss_pred EEEEecccCCCCCCCceEEEecCCCCCCCCCCcceEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCC--------------
Q 021997 57 EADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLP-------------- 122 (304)
Q Consensus 57 ~~g~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~s~~~~~~l~~~l~~~~~~-------------- 122 (304)
.++..+..|.|+.|||++++..... ...+.+|+|||||||+..++++++.+.+.+......
T Consensus 2 ~~~~~~~~g~r~~neD~~~~~~~~~-----~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~ 76 (254)
T cd00143 2 SAGVSDKGGDRKTNEDAVVIKPNLN-----NEDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALR 76 (254)
T ss_pred ceeeecCCCCCCCCcceEEEeccCC-----CCCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 4677888889999999999864321 024589999999999999999998887766432110
Q ss_pred ------------------CCCCCCccEEEEEEeCCeEEEEeeCCcEEEEEeccccCCCCCCccccCccceEEeCCCCCCC
Q 021997 123 ------------------RGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAI 184 (304)
Q Consensus 123 ------------------~~~~~GtT~~~~~i~~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~LT~dH~~~ 184 (304)
....+|||++++++.++.++++|+||||+|+++++ .++++|.||++.
T Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~---------------~~~~lt~dh~~~ 141 (254)
T cd00143 77 KAFLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNG---------------EAVQLTKDHKPV 141 (254)
T ss_pred HHHHHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCC---------------ceeEcCCCCCCc
Confidence 12578999999999999999999999999999999 999999999999
Q ss_pred ChHHHHHHHHcCCeeeeCCccccceecccccCCccCccCCeeeeceeEEEEe-cCCCeEEEEEcCCCccccChHHHHHHH
Q 021997 185 YPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEV-TERDHFIILGCDGLWGVFGPSDAVEFV 263 (304)
Q Consensus 185 ~~~e~~ri~~~gg~v~~~~r~~g~l~~tRalGd~~~k~~~v~~~P~i~~~~l-~~~d~~liLaSDGl~d~l~~~ei~~iv 263 (304)
.+.++.||...++... ..+.++...+||+||+..+| +++..+|++..+.+ .++| +||||||||||+++++++.+++
T Consensus 142 ~~~~~~~i~~~~~~~~-~~~~~~~~~~t~~lG~~~~~-~~~~~~~~~~~~~l~~~~d-~ill~SDG~~~~l~~~~i~~~~ 218 (254)
T cd00143 142 NEEERERIEKAGGRVS-NGRVPGVLAVTRALGDFDLK-PGVSAEPDVTVVKLTEDDD-FLILASDGLWDVLSNQEAVDIV 218 (254)
T ss_pred ChHHHHHHHHcCCcEE-eCEEcCceeeccccCCcccc-CCEEcCCeEEEEEeCCCCc-EEEEECCCCeeccChHHHHHHH
Confidence 8999999999999764 34556778899999999888 45889999999999 5666 9999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEe
Q 021997 264 QKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIF 301 (304)
Q Consensus 264 ~~~~~~~~~~~~~a~~lv~~A~~~~~~~DNiTvivv~l 301 (304)
...... .+++.+|+.|++.|. ..++.||+||||++|
T Consensus 219 ~~~~~~-~~~~~~a~~l~~~a~-~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 219 RSELAK-EDLQEAAQELVDLAL-RRGSHDNITVVVVRL 254 (254)
T ss_pred HHHhcc-cCHHHHHHHHHHHHH-hCCCCCCEEEEEEeC
Confidence 875421 258999999999997 588999999999975
No 11
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=1.1e-36 Score=300.44 Aligned_cols=223 Identities=22% Similarity=0.280 Sum_probs=158.7
Q ss_pred eeeEEEEecccCC-CCCCCceEEEecCCCC-CCCCC---CcceEEEEEcCCCCHHHHH----HHHHHHHHHHHhcCC---
Q 021997 54 VEIEADAAEDKGS-RHTMEDASVVLVDASS-DSPPN---LRCAHFAIFDGHGGRLAAE----YAQKRLHANVISAGL--- 121 (304)
Q Consensus 54 ~~~~~g~~s~~G~-R~~nED~~~~~~~~~~-~~~~~---~~~~l~~V~DGhGG~~~s~----~~~~~l~~~l~~~~~--- 121 (304)
+.+.++.++++|. |+.|||++.+..+... ..+.. ....+|+|||||||+.+++ ++++.|.++|.....
T Consensus 373 ~~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~ 452 (645)
T PRK14559 373 VSLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDEL 452 (645)
T ss_pred eeEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhcccc
Confidence 5688899999995 9999999876542110 01111 1346899999999877555 444555444322100
Q ss_pred C--------------------------CCCCCCccEEEEEEeCCeEEEEeeCCcEEEEEe-ccccCCCCCCccccCccce
Q 021997 122 P--------------------------RGWQDGATAVCIWILGRTVFVANIGDAKAVVAR-SSIVDGSNNHLDELSSLKA 174 (304)
Q Consensus 122 ~--------------------------~~~~~GtT~~~~~i~~~~l~vanvGDSr~~l~~-~~~~~~~~~~~~~~~~~~~ 174 (304)
+ ....+|||++++++.++++|++||||||+|+++ ++ .+
T Consensus 453 ~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g---------------~l 517 (645)
T PRK14559 453 PDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKG---------------GL 517 (645)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCC---------------eE
Confidence 0 123589999999999999999999999999985 56 89
Q ss_pred EEeCCCCCCCChHHHHHHHHcCCeeeeCCccccceecccccCCccCccCCeeeeceeEEEEecCCCeEEEEEcCCCccc-
Q 021997 175 IVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGV- 253 (304)
Q Consensus 175 ~~LT~dH~~~~~~e~~ri~~~gg~v~~~~r~~g~l~~tRalGd~~~k~~~v~~~P~i~~~~l~~~d~~liLaSDGl~d~- 253 (304)
++||+||++.....+..+....+ ..+ ++...+|||||+...+. .+|++..+.+.++| +||||||||||.
T Consensus 518 ~QLT~DHs~~~~lv~~Gi~~~~a----~~~-p~~~~LTrALG~~~~~~----l~Pdi~~~~L~~gD-~lLLCSDGL~D~~ 587 (645)
T PRK14559 518 EQLTVDHEVGQREIQRGVEPQIA----YAR-PDAYQLTQALGPRDNSA----IQPDIQFLEIEEDT-LLLLCSDGLSDND 587 (645)
T ss_pred EEeCCCCCHHHHHHHhCCCHHHH----hcC-cccceeeeccCCCCCCc----ccceEEEEEcCCCC-EEEEECCCCCCCc
Confidence 99999999864322222111000 112 34678999999876543 38999999998766 999999999994
Q ss_pred -cChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 021997 254 -FGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 303 (304)
Q Consensus 254 -l~~~ei~~iv~~~~~~~~~~~~~a~~lv~~A~~~~~~~DNiTvivv~l~~ 303 (304)
++. ...+.+........+++++|+.|++.|+ .+++.||+|||||+++.
T Consensus 588 ~ve~-~~~~~l~~il~~~~~l~~aa~~Li~~Al-~~gg~DNITvIvV~l~~ 636 (645)
T PRK14559 588 LLET-HWQTHLLPLLSSSANLDQGLNKLIDLAN-QYNGHDNITAILVRLKV 636 (645)
T ss_pred ccch-HHHHHHHHHHhcCCCHHHHHHHHHHHHH-HcCCCCcEEEEEEEecc
Confidence 443 3333344444555678999999999998 69999999999999864
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.96 E-value=6.9e-28 Score=214.32 Aligned_cols=228 Identities=25% Similarity=0.397 Sum_probs=170.2
Q ss_pred EEEecccCCCCCCCceEEEecCCC-----CCCCCCCcceEEEEEcCCCCHHHHHHHHHHHHHHHHhcCC-----------
Q 021997 58 ADAAEDKGSRHTMEDASVVLVDAS-----SDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGL----------- 121 (304)
Q Consensus 58 ~g~~s~~G~R~~nED~~~~~~~~~-----~~~~~~~~~~l~~V~DGhGG~~~s~~~~~~l~~~l~~~~~----------- 121 (304)
.|..+.+-+|..|.|.-.+.+... .-+.+...+++|.+||||.|..+|-.+++.++..+..+..
T Consensus 107 ~gs~t~~~n~n~~~~~~~l~~g~~~~~k~~~~a~~~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~ 186 (493)
T KOG1323|consen 107 QGSETRKRNSNENDDDPMLTPGGDDTVKSSMFAPRADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDR 186 (493)
T ss_pred cCccccCCCCCccccCcCCCCCCCcchhhcccCCCCcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhcc
Confidence 444455555666666655432211 0133456789999999999999999999888876643210
Q ss_pred -CC-----------------------------------------------------CCCCCccEEEEEEeCCeEEEEeeC
Q 021997 122 -PR-----------------------------------------------------GWQDGATAVCIWILGRTVFVANIG 147 (304)
Q Consensus 122 -~~-----------------------------------------------------~~~~GtT~~~~~i~~~~l~vanvG 147 (304)
+. ...+|||+++++..-.+||+||.|
T Consensus 187 ~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LViGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAG 266 (493)
T KOG1323|consen 187 HENLNFGKHRSESSYSMSEMSREDEKRIRHEHLVIGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAG 266 (493)
T ss_pred ccccccccccccCCcccccccchhhccCchHHhhHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCC
Confidence 00 456799999999999999999999
Q ss_pred CcEEEEEeccccCCCCCCccccCccceEEeCCCCCCCChHHHHHHHHcC--------Ceee-------------------
Q 021997 148 DAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSG--------GTVS------------------- 200 (304)
Q Consensus 148 DSr~~l~~~~~~~~~~~~~~~~~~~~~~~LT~dH~~~~~~e~~ri~~~g--------g~v~------------------- 200 (304)
|||+++.|++ .++.|+++.+|.. ||+||+..+ +.+.
T Consensus 267 DsRAIlVrnd---------------eirplS~efTPet--ERqRlQ~Laf~~PeLlgneFtrLEfprRl~~~dLgqrvLy 329 (493)
T KOG1323|consen 267 DSRAILVRND---------------EIRPLSKEFTPET--ERQRLQELAFRNPELLGNEFTRLEFPRRLTIKDLGQRVLY 329 (493)
T ss_pred CceEEEEecC---------------CeeecccccCcHH--HHHHHHHHhhcChHhhcccccceecccccChhhhcceeee
Confidence 9999999999 9999999999965 889988754 1110
Q ss_pred ---------------------------eCCccccceecccccCCccCcc--------CCeeeeceeEEEEecC----CCe
Q 021997 201 ---------------------------SNGRLQGRLEVSRAFGDRQFKK--------FGVVATPDIHSFEVTE----RDH 241 (304)
Q Consensus 201 ---------------------------~~~r~~g~l~~tRalGd~~~k~--------~~v~~~P~i~~~~l~~----~d~ 241 (304)
...|+-+.+.+||.|||.++|- +-+++.|+|+.+++.+ .|+
T Consensus 330 RD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lkv~dsnl~iKPFLssvPeV~V~dl~q~e~~~Dd 409 (493)
T KOG1323|consen 330 RDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLKVVDSNLSIKPFLSSVPEVRVYDLRQYEHLTDD 409 (493)
T ss_pred eccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceeeeecCCcccchhhhcCCeeEEEehhhhccCCCc
Confidence 0124556789999999998873 2367899999998863 455
Q ss_pred EEEEEcCCCccccChHHHHHHHHHHHHcCC--CH---HHHHHHHHHHHHH------------hCCCCCCcEEEEEEec
Q 021997 242 FIILGCDGLWGVFGPSDAVEFVQKLLKEGL--SV---TAVSRRLVREAVL------------ERRCKDNCTAIVIIFR 302 (304)
Q Consensus 242 ~liLaSDGl~d~l~~~ei~~iv~~~~~~~~--~~---~~~a~~lv~~A~~------------~~~~~DNiTvivv~l~ 302 (304)
.+|||||||||+++++|+..++++.+.... +| ..+|+.|+..|-- ..++.|||||.||-|.
T Consensus 410 VvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva~arg~~k~rgWr~~n~~lgSgDDIsVfVIPL~ 487 (493)
T KOG1323|consen 410 VVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLVAAARGQQKDRGWRMNNGGLGSGDDISVFVIPLK 487 (493)
T ss_pred EEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhcCccCCCceeccCCCcCCCCceEEEEEecc
Confidence 999999999999999999999999876432 23 3577777765521 1257899999999875
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.87 E-value=1e-20 Score=168.52 Aligned_cols=186 Identities=22% Similarity=0.275 Sum_probs=130.7
Q ss_pred CCCCceEEEecCCCCCCCCCCcceEEEEEcCCCCHH-----HHHHHHHHHHHHHHhc-----CCC-C-------------
Q 021997 68 HTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRL-----AAEYAQKRLHANVISA-----GLP-R------------- 123 (304)
Q Consensus 68 ~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~-----~s~~~~~~l~~~l~~~-----~~~-~------------- 123 (304)
+.-||++++..+ .+..+.|||||+|||. .+.|. +.|+.+..+. ..+ +
T Consensus 89 ~~GEDa~Fvss~--------~~~~v~GVADGVGGWa~~GiDpg~fS-~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l~ 159 (330)
T KOG1379|consen 89 KGGEDAWFVSSN--------PHAIVMGVADGVGGWAEYGIDPGAFS-RELMSNCERLVQNSDFNPSDPVNLLEKAYAELK 159 (330)
T ss_pred CCCCcceeeccC--------cccceEEEccccchHhhcCcCHHHHH-HHHHHHHHHHhcccccCCCChHHHHHHHHHHHh
Confidence 557899999653 2447899999999874 44444 3444332221 111 0
Q ss_pred ----CCCCCccEEEEEEe--CCeEEEEeeCCcEEEEEeccccCCCCCCccccCccceEEeCCCCCC--CChHHHHHHHHc
Q 021997 124 ----GWQDGATAVCIWIL--GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKA--IYPQERARIQKS 195 (304)
Q Consensus 124 ----~~~~GtT~~~~~i~--~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~LT~dH~~--~~~~e~~ri~~~ 195 (304)
...++||++++.++ +.+||+||+|||-..++|++ ++++-|..+.. ..|....-
T Consensus 160 ~~~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G---------------~vv~~S~~Q~H~FN~PyQLs~---- 220 (330)
T KOG1379|consen 160 SQKVPIVGSSTACILALDRENGKLHTANLGDSGFLVVREG---------------KVVFRSPEQQHYFNTPYQLSS---- 220 (330)
T ss_pred hcCCCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECC---------------EEEEcCchheeccCCceeecc----
Confidence 23477899999998 78999999999999999999 88888876442 22111000
Q ss_pred CCeeeeCCccccceecccccCCccCccCCeeeeceeEEEEecCCCeEEEEEcCCCccccChHHHHHHHHHHHH-cCCCHH
Q 021997 196 GGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLK-EGLSVT 274 (304)
Q Consensus 196 gg~v~~~~r~~g~l~~tRalGd~~~k~~~v~~~P~i~~~~l~~~d~~liLaSDGl~d~l~~~ei~~iv~~~~~-~~~~~~ 274 (304)
+.-.....++| .....+.+.+++.++| .||||||||||.|.+++|.+++..... ....++
T Consensus 221 -----------~p~~~~~~~~d-------~p~~ad~~~~~v~~GD-vIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq 281 (330)
T KOG1379|consen 221 -----------PPEGYSSYISD-------VPDSADVTSFDVQKGD-VIILATDGLFDNLPEKEILSILKGLDARGNLDLQ 281 (330)
T ss_pred -----------CCccccccccC-------CccccceEEEeccCCC-EEEEecccccccccHHHHHHHHHHhhccccccHH
Confidence 00000111222 2235677899999998 999999999999999999999998876 667899
Q ss_pred HHHHHHHHHHHH----------------------hCCCCCCcEEEEEE
Q 021997 275 AVSRRLVREAVL----------------------ERRCKDNCTAIVII 300 (304)
Q Consensus 275 ~~a~~lv~~A~~----------------------~~~~~DNiTvivv~ 300 (304)
..|+.|++.|.. ..|..|+||+||..
T Consensus 282 ~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~ 329 (330)
T KOG1379|consen 282 VTAQKIAEKARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSS 329 (330)
T ss_pred HHHHHHHHHHHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEEec
Confidence 999999998854 11348999999975
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=9.8e-22 Score=194.98 Aligned_cols=227 Identities=24% Similarity=0.340 Sum_probs=189.4
Q ss_pred ccceeeEEEEecccCCCCCCCceEEEecCCCCCCCCCCcceEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCCC-------
Q 021997 51 IDFVEIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPR------- 123 (304)
Q Consensus 51 ~~~~~~~~g~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~s~~~~~~l~~~l~~~~~~~------- 123 (304)
.+.+.+.+|++...|.|.++.-+...+.++ .. ...+.||.+||-+......++...+.+++.++....
T Consensus 517 ~n~~~~t~Gv~~~~gqrnk~c~~~~~v~nf----~~-~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~et~~m 591 (1081)
T KOG0618|consen 517 VNAFLWTYGVAGVSGQRNKVCSRAVWVENF----FL-NPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGNETEQM 591 (1081)
T ss_pred cceeheeeccchhcccccchhhhhhhhhhc----cc-CCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccChHHHH
Confidence 345677899999999999998877666543 11 234689999999999999888888887776531110
Q ss_pred --------------CCCCCccEEEEEEeC--------CeEEEEeeCCcEEEEEeccccCCCCCCccccCccceEEeCCCC
Q 021997 124 --------------GWQDGATAVCIWILG--------RTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVH 181 (304)
Q Consensus 124 --------------~~~~GtT~~~~~i~~--------~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~LT~dH 181 (304)
+...|..++.+.+.. .++.+||+|+|.+++++++ +..++|+-.
T Consensus 592 r~~fl~~~rklg~~g~~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng---------------~~~p~t~~~ 656 (1081)
T KOG0618|consen 592 RNTFLRLNRKLGEEGQVLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNG---------------KPLPTTRSP 656 (1081)
T ss_pred HHHHHHHhhhhhhhhccccchhhheeecccccCcccchhhhHhhhccchhhhhhcC---------------CcCcccccc
Confidence 334455566666653 3789999999999999999 777777765
Q ss_pred -CCCChHHHHHHHHcCCeeeeCCccccceecccccCCccCccCCeeeeceeEEEEecCCCeEEEEEcCCCccccChHHHH
Q 021997 182 -KAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAV 260 (304)
Q Consensus 182 -~~~~~~e~~ri~~~gg~v~~~~r~~g~l~~tRalGd~~~k~~~v~~~P~i~~~~l~~~d~~liLaSDGl~d~l~~~ei~ 260 (304)
....++|.+||...+|++..+++++|....||++|.+...+ +|.+.|+|....+++.|+|||+++-++|++|+-++++
T Consensus 657 ~~~v~~eE~~RI~~~~g~i~ed~k~ngvt~~tR~iG~~~l~P-~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~ 735 (1081)
T KOG0618|consen 657 MLEVDREEYKRIVDSKGFITEDNKLNGVTSSTRAIGPFSLFP-HVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAV 735 (1081)
T ss_pred cccCCHHHHHHHHHhcCeecCCCeeeceeeeeeecccccccc-cccCCCceeeEecccCceEEEEcchHHhhhccHHHHH
Confidence 45699999999999999999999999999999999998886 5999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 021997 261 EFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 303 (304)
Q Consensus 261 ~iv~~~~~~~~~~~~~a~~lv~~A~~~~~~~DNiTvivv~l~~ 303 (304)
+.+++ ..+|-.+|++|++.|. +.|+.||++++||+|..
T Consensus 736 ~~vRn----~~dpL~AAkKL~d~Aq-SYgc~~nv~vlVv~l~~ 773 (1081)
T KOG0618|consen 736 DAVRN----VEDPLLAAKKLCDLAQ-SYGCAENVSVLVVRLNH 773 (1081)
T ss_pred HHHhc----CCchHHHHHHHHHHHH-hcccccCeeEEEEEeec
Confidence 99984 3368999999999997 79999999999999853
No 15
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.74 E-value=1.1e-17 Score=145.79 Aligned_cols=156 Identities=22% Similarity=0.269 Sum_probs=86.0
Q ss_pred ecccCCCCCCCceEEEecCCCCCCCCCCcceEEEEEcCCCCHHH----HHHHHHHHHHHHHhcCC---------------
Q 021997 61 AEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLA----AEYAQKRLHANVISAGL--------------- 121 (304)
Q Consensus 61 ~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~----s~~~~~~l~~~l~~~~~--------------- 121 (304)
.+++|.|..|||++.+.... ...+++|+||+||... |.++++.+...+.....
T Consensus 3 ~sh~~~~~~nqD~~~~~~~~--------~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~ 74 (212)
T PF13672_consen 3 RSHRGRGAPNQDAFGIRTDD--------DGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIK 74 (212)
T ss_dssp ----TTSSS--EEEEEE-TC--------CTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCEEeeeCC--------CCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 57899999999999975432 2367799999995554 44455544443322110
Q ss_pred -----------------CCCCCCCccEEEEEEeCCeEEEEeeCCcEEEEE-eccccCCCCCCccccCccceEEeCCCCCC
Q 021997 122 -----------------PRGWQDGATAVCIWILGRTVFVANIGDAKAVVA-RSSIVDGSNNHLDELSSLKAIVVTRVHKA 183 (304)
Q Consensus 122 -----------------~~~~~~GtT~~~~~i~~~~l~vanvGDSr~~l~-~~~~~~~~~~~~~~~~~~~~~~LT~dH~~ 183 (304)
......+||++++++.++.++++|+||||+|+. +++ .+..++.+|+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g---------------~~~~l~~~~~~ 139 (212)
T PF13672_consen 75 KEILSIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNG---------------EIQQLTDDHSG 139 (212)
T ss_dssp HHHHHHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETT---------------EEEE-S---BH
T ss_pred HHHHHHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCC---------------EEEEcCCCccc
Confidence 013456899999999999999999999999754 566 88999999962
Q ss_pred CChHHHHHHHHcCCeeeeCCccccceecccccCCccCccCCeeeeceeEEEEecCCCeEEEEEcCCCccccChHH-HHHH
Q 021997 184 IYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSD-AVEF 262 (304)
Q Consensus 184 ~~~~e~~ri~~~gg~v~~~~r~~g~l~~tRalGd~~~k~~~v~~~P~i~~~~l~~~d~~liLaSDGl~d~l~~~e-i~~i 262 (304)
. ... .++.+.... .....++..+++.+++ .|+|||||||+.+...+ +..+
T Consensus 140 ~----~~~-------------------~~~~~~~~~-----~~~~~~~~~~~~~~~d-~ilL~SDG~~~~l~~~~~~~~~ 190 (212)
T PF13672_consen 140 E----YPN-------------------QTRSLTGDD-----PEPDVQYGSIPLEEGD-VILLCSDGVWDNLRSYEDLEQF 190 (212)
T ss_dssp H----HHH-------------------CTTSCCHHC-----CCTETEEEEEE--TT--EEEEE-HHHHTTS-HHHHHHHH
T ss_pred h----hhh-------------------hhhccCccc-----cccCCeEEEEEcCCCC-EEEEECcCccccCCCHHHHHHH
Confidence 1 110 022222211 1113355667776777 89999999999998655 6677
Q ss_pred HHHHHH
Q 021997 263 VQKLLK 268 (304)
Q Consensus 263 v~~~~~ 268 (304)
+....+
T Consensus 191 l~~~~~ 196 (212)
T PF13672_consen 191 LKDLWN 196 (212)
T ss_dssp ------
T ss_pred hhhccc
Confidence 766544
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.70 E-value=1.2e-15 Score=130.88 Aligned_cols=157 Identities=20% Similarity=0.151 Sum_probs=113.5
Q ss_pred CCCCceEEEecCCCCCCCCCCcceEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCCC------------------CCCCCc
Q 021997 68 HTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPR------------------GWQDGA 129 (304)
Q Consensus 68 ~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~s~~~~~~l~~~l~~~~~~~------------------~~~~Gt 129 (304)
...-|.|.+.... ....+++|+||||+...|.+++..+...|....... ....|+
T Consensus 15 ~~~GD~~~~~~~~-------~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~~~~~~l~~~n~~l~~~~~~~~~~ 87 (193)
T smart00331 15 QVGGDFYDVVKLP-------EGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGISLSQILERLNRAIYENGEDGMFA 87 (193)
T ss_pred hcCccEEEEEEeC-------CCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCcEE
Confidence 5566877665421 124789999999977777777777766654321110 334789
Q ss_pred cEEEEEE--eCCeEEEEeeCCcEEEEEe-ccccCCCCCCccccCccceEEeCCCCCCCChHHHHHHHHcCCeeeeCCccc
Q 021997 130 TAVCIWI--LGRTVFVANIGDAKAVVAR-SSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQ 206 (304)
Q Consensus 130 T~~~~~i--~~~~l~vanvGDSr~~l~~-~~~~~~~~~~~~~~~~~~~~~LT~dH~~~~~~e~~ri~~~gg~v~~~~r~~ 206 (304)
|++++++ ..++++++|+||+|+|+++ ++ ...+++.+.
T Consensus 88 T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~---------------~~~~~~~~~------------------------- 127 (193)
T smart00331 88 TLFLALYDFAGGTLSYANAGHSPPYLLRADG---------------GLVEDLDDL------------------------- 127 (193)
T ss_pred EEEEEEEECCCCEEEEEeCCCCceEEEECCC---------------CeEEEcCCC-------------------------
Confidence 9999888 5778999999999999999 44 444444431
Q ss_pred cceecccccCCccCccCCeeeeceeEEEEecCCCeEEEEEcCCCccccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 021997 207 GRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAV 285 (304)
Q Consensus 207 g~l~~tRalGd~~~k~~~v~~~P~i~~~~l~~~d~~liLaSDGl~d~l~~~ei~~iv~~~~~~~~~~~~~a~~lv~~A~ 285 (304)
++.+|... ..++++..+.+.++| .|+|+||||||.++.+++.+++.+.. ..+++++++++.+.++
T Consensus 128 -----~~~lG~~~------~~~~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~l~~~l~~~~--~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 128 -----GAPLGLEP------DVEVDVRELTLEPGD-LLLLYTDGLTEARNPERLEELLEELL--GSPPAEIAQRILEELL 192 (193)
T ss_pred -----CceeeeCC------CCcceeEEEeeCCCC-EEEEECCCccccCChHHHHHHHHHhc--CCCHHHHHHHHHHHHh
Confidence 34555321 124667788898888 89999999999999999999988754 3468899998888764
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.53 E-value=3.4e-13 Score=137.68 Aligned_cols=186 Identities=16% Similarity=0.109 Sum_probs=124.2
Q ss_pred eeeEEEEe-cccCCCCCCCceEEEecCCCCCCCCCCcceEEEEEcCCCCHHHHHHHHHHHHHH---HHhcCCC-------
Q 021997 54 VEIEADAA-EDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHAN---VISAGLP------- 122 (304)
Q Consensus 54 ~~~~~g~~-s~~G~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~s~~~~~~l~~~---l~~~~~~------- 122 (304)
+.+.+|++ ..++.+..+.|.+.+.... ....+++|+||+|+...|...+..+.+. +.....+
T Consensus 550 ~~~~~g~a~~~k~g~~vsGD~y~~~~l~-------~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~~~~~ai~~ 622 (764)
T TIGR02865 550 YHVSTGVARAAKDGELVSGDSYSFGKLS-------AGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGFDREVAIKT 622 (764)
T ss_pred eeehhhHHHhcCCCCcccCceEEEEEEC-------CCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 45555655 4455678899999775421 1235789999999444343443333222 2222211
Q ss_pred --------CCCCCCccEEEEEEe--CCeEEEEeeCCcEEEEEeccccCCCCCCccccCccceEEeCCCCCCCChHHHHHH
Q 021997 123 --------RGWQDGATAVCIWIL--GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARI 192 (304)
Q Consensus 123 --------~~~~~GtT~~~~~i~--~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~LT~dH~~~~~~e~~ri 192 (304)
....+.+|+.+++++ .+.+.++++|+++.|+.+++ .+.+++..+.|
T Consensus 623 lN~~L~~~~~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~---------------~v~~i~s~~lP--------- 678 (764)
T TIGR02865 623 VNSILSLRSTDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGA---------------KVEVIRSSNLP--------- 678 (764)
T ss_pred HHHHHHhCCCCCeEEEEEEEEEECCCCeEEEEecCCCceEEEECC---------------EEEEecCCCce---------
Confidence 123456898888886 57899999999999999887 77777654332
Q ss_pred HHcCCeeeeCCccccceecccccCCccCccCCeeeeceeEEEEecCCCeEEEEEcCCCccccChHH-----HHHHHHHHH
Q 021997 193 QKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSD-----AVEFVQKLL 267 (304)
Q Consensus 193 ~~~gg~v~~~~r~~g~l~~tRalGd~~~k~~~v~~~P~i~~~~l~~~d~~liLaSDGl~d~l~~~e-----i~~iv~~~~ 267 (304)
+|-. -..+++....++.++| +|||+||||||..++.+ +.+++...
T Consensus 679 ----------------------lGil------~~~~~~~~~~~L~~GD-~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~- 728 (764)
T TIGR02865 679 ----------------------IGIL------DEVDVELVRKKLKNGD-LIVMVSDGVLEGEKEVEGKVLWLVRKLKET- 728 (764)
T ss_pred ----------------------eEec------cCCccceEEEEeCCCC-EEEEECCCCCcCCcccccHHHHHHHHHHhc-
Confidence 1210 0125566778898888 99999999999886533 45555432
Q ss_pred HcCCCHHHHHHHHHHHHHHhC--CCCCCcEEEEEEe
Q 021997 268 KEGLSVTAVSRRLVREAVLER--RCKDNCTAIVIIF 301 (304)
Q Consensus 268 ~~~~~~~~~a~~lv~~A~~~~--~~~DNiTvivv~l 301 (304)
...+|+++++.|++.|.... ...||+|++++++
T Consensus 729 -~~~~p~ela~~Il~~a~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 729 -NTNDPEEIAEYLLEKAKELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred -CCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Confidence 23479999999999987432 2489999999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.29 E-value=3.1e-10 Score=96.99 Aligned_cols=159 Identities=20% Similarity=0.184 Sum_probs=96.8
Q ss_pred ceEEEEEcCCC-CHHHHHHHHHHHHHHH---HhcCCCC---------------CC-CCCccEEEEEEe--CCeEEEEeeC
Q 021997 90 CAHFAIFDGHG-GRLAAEYAQKRLHANV---ISAGLPR---------------GW-QDGATAVCIWIL--GRTVFVANIG 147 (304)
Q Consensus 90 ~~l~~V~DGhG-G~~~s~~~~~~l~~~l---~~~~~~~---------------~~-~~GtT~~~~~i~--~~~l~vanvG 147 (304)
..++.|+|+.| |-.++-+ +..+...+ ....... .. ...+|++++.+. .+.++++|+|
T Consensus 4 ~~~~~v~D~~GhG~~aa~~-~~~~~~~~~~~~~~~~~p~~~l~~ln~~l~~~~~~~~~~~t~~~~~~d~~~~~l~~~~aG 82 (193)
T PF07228_consen 4 RYFIIVGDVSGHGVSAALL-SAALASAIRELLDEGLDPEELLEALNRRLYRDLKGDNRYATACYAIIDPETGTLTYANAG 82 (193)
T ss_dssp EEEEEEEEESSSSHHHHHH-HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHTTTTSTTEEEEEEEEETTTTEEEEEEES
T ss_pred EEEEEEEEecCCCHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhccccceEEEEEecccceEEEEeCCC
Confidence 36789999999 4444433 33332222 2221111 22 256788888766 4579999999
Q ss_pred CcEEEEEeccccCCCCCCccccCccceEEeCCCCCCCChHHHHHHHHcCCeeeeCCccccceecccccCCccCccCCeee
Q 021997 148 DAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVA 227 (304)
Q Consensus 148 DSr~~l~~~~~~~~~~~~~~~~~~~~~~~LT~dH~~~~~~e~~ri~~~gg~v~~~~r~~g~l~~tRalGd~~~k~~~v~~ 227 (304)
++++++++.+. + ....+.....| +|-..- .
T Consensus 83 ~~~~l~~~~~~--~-----------~~~~~~~~~~~-------------------------------lG~~~~------~ 112 (193)
T PF07228_consen 83 HPPPLLLRPGG--R-----------EIEQLESEGPP-------------------------------LGIFED------I 112 (193)
T ss_dssp SSEEEEEETTC--T-----------EEEEETCSSBB-------------------------------CSSSCT------T
T ss_pred CCCEEEEeccc--c-----------ceeecccCccc-------------------------------eeeecc------c
Confidence 99999999951 0 33333322221 231111 2
Q ss_pred eceeEEEEecCCCeEEEEEcCCCccccChHH-------HHHHHHHHHHcCCCHHHHHHHHHHHHHH--hCCCCCCcEEEE
Q 021997 228 TPDIHSFEVTERDHFIILGCDGLWGVFGPSD-------AVEFVQKLLKEGLSVTAVSRRLVREAVL--ERRCKDNCTAIV 298 (304)
Q Consensus 228 ~P~i~~~~l~~~d~~liLaSDGl~d~l~~~e-------i~~iv~~~~~~~~~~~~~a~~lv~~A~~--~~~~~DNiTviv 298 (304)
++....+++.++| .|+|+||||+|....+. +.+++.+. ...+++++++.+++.+.. .....||+|+++
T Consensus 113 ~~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~DD~tvl~ 189 (193)
T PF07228_consen 113 DYQEQEIQLEPGD-RLLLYTDGLFEALNEDGEFFGEERLLELLDEN--RGLSPQEIIDALLEAIDRFGKGPLRDDITVLV 189 (193)
T ss_dssp CEEEEEEE--TTE-EEEEECHHHCTTTCHHCHHCCCHHHHHHHHCH--TTS-HHHHHHHHHHHHHHHTTSSTSS-EEEEE
T ss_pred cccceEEEecccc-EEEEeCCChhhccCCccchhHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHhcCCCCCCceEEEE
Confidence 3445677887777 89999999999984432 33444332 345789999999998864 236899999999
Q ss_pred EEec
Q 021997 299 IIFR 302 (304)
Q Consensus 299 v~l~ 302 (304)
++++
T Consensus 190 ~~~~ 193 (193)
T PF07228_consen 190 IRRQ 193 (193)
T ss_dssp EEE-
T ss_pred EEEC
Confidence 9874
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=97.94 E-value=0.00096 Score=63.11 Aligned_cols=162 Identities=16% Similarity=0.131 Sum_probs=98.1
Q ss_pred cceEEEEEcCCC-CHHHHHHHHHHH--HHHHHhc--CCCC--------------CCCCCccEEEEEEe--CCeEEEEeeC
Q 021997 89 RCAHFAIFDGHG-GRLAAEYAQKRL--HANVISA--GLPR--------------GWQDGATAVCIWIL--GRTVFVANIG 147 (304)
Q Consensus 89 ~~~l~~V~DGhG-G~~~s~~~~~~l--~~~l~~~--~~~~--------------~~~~GtT~~~~~i~--~~~l~vanvG 147 (304)
....++|.|..| |-.++-...... .+.+... ..+. ....=+|+...+++ ...+..+|+|
T Consensus 174 ~~~~i~I~DvsG~Gv~aal~m~~~~~~~~~~~~~~~~~p~~~l~~~n~~~~~~~~~~~f~T~~~~~~d~~~~~l~y~~aG 253 (367)
T COG2208 174 KRLRIGIGDVSGKGVPAALLMLMPKLALRLLLESGPLDPADVLETLNRVLKQNLEEDMFVTLFLGVYDLDSGELTYSNAG 253 (367)
T ss_pred cEEEEEEEeccCCCHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHhcccCCcEEEEEEEEEeccCCEEEEeeCC
Confidence 346789999999 766655522211 1122222 0110 11134566655555 5578889999
Q ss_pred CcEEEEEeccccCCCCCCccccCccceEEeCCCCCCCChHHHHHHHHcCCeeeeCCccccceecccccCCccCccCCeee
Q 021997 148 DAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVA 227 (304)
Q Consensus 148 DSr~~l~~~~~~~~~~~~~~~~~~~~~~~LT~dH~~~~~~e~~ri~~~gg~v~~~~r~~g~l~~tRalGd~~~k~~~v~~ 227 (304)
---+++++.+ .......-+ ....++|-.. -.
T Consensus 254 H~p~~i~~~~---------------~~~~~~~l~----------------------------~~g~piG~~~------~~ 284 (367)
T COG2208 254 HEPALILSAD---------------GEIEVEDLT----------------------------ALGLPIGLLP------DY 284 (367)
T ss_pred CCCeeEEEcC---------------CCceeEEcc----------------------------CCCceeeecC------Cc
Confidence 8888888876 211000001 1134445211 12
Q ss_pred eceeEEEEecCCCeEEEEEcCCCcc-------ccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh---CCCCCCcEEE
Q 021997 228 TPDIHSFEVTERDHFIILGCDGLWG-------VFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLE---RRCKDNCTAI 297 (304)
Q Consensus 228 ~P~i~~~~l~~~d~~liLaSDGl~d-------~l~~~ei~~iv~~~~~~~~~~~~~a~~lv~~A~~~---~~~~DNiTvi 297 (304)
.+.+....+.++| .+++.||||.+ .+..+....++... ...+++++++.+.+....- ..-.||+|++
T Consensus 285 ~~~~~~~~l~~gd-~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~i~~~l~~~~~~~~~~DDiTll 361 (367)
T COG2208 285 QYEVASLQLEPGD-LLVLYTDGVTEARNSDGEFFGLERLLKILGRL--LGQPAEEILEAILESLEELQGDQIQDDDITLL 361 (367)
T ss_pred cchheeEEecCCC-EEEEEcCCeeeeecCCccEecHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHhhCCccccCceEEE
Confidence 4555677888877 99999999998 56666777777653 3447888888888766532 2347889999
Q ss_pred EEEec
Q 021997 298 VIIFR 302 (304)
Q Consensus 298 vv~l~ 302 (304)
++++.
T Consensus 362 ~lk~~ 366 (367)
T COG2208 362 VLKVK 366 (367)
T ss_pred EEEec
Confidence 99975
No 20
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=69.29 E-value=6 Score=33.54 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=36.5
Q ss_pred eEEEEEcCCCc-----------cccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 021997 241 HFIILGCDGLW-----------GVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAV 285 (304)
Q Consensus 241 ~~liLaSDGl~-----------d~l~~~ei~~iv~~~~~~~~~~~~~a~~lv~~A~ 285 (304)
+-++..|.|+| |+|.++...+.+.....+-.-|.++|+.|++.-.
T Consensus 72 DTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq 127 (237)
T COG3700 72 DTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQ 127 (237)
T ss_pred CeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHH
Confidence 36788888887 8888988888887766666679999999999776
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=43.03 E-value=16 Score=26.16 Aligned_cols=20 Identities=10% Similarity=0.275 Sum_probs=15.0
Q ss_pred cCCCeEEEEEcCCCccccCh
Q 021997 237 TERDHFIILGCDGLWGVFGP 256 (304)
Q Consensus 237 ~~~d~~liLaSDGl~d~l~~ 256 (304)
...++.+++++||+|=-+..
T Consensus 24 ~~~G~Rllva~nGv~lEv~r 43 (72)
T PF09436_consen 24 ERPGHRLLVASNGVFLEVRR 43 (72)
T ss_pred ccCCcEEEEecCcEEEEEec
Confidence 43455899999999976654
No 22
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=39.85 E-value=1e+02 Score=28.90 Aligned_cols=91 Identities=19% Similarity=0.115 Sum_probs=58.8
Q ss_pred CCCcceEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCCC------------------------------------------
Q 021997 86 PNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPR------------------------------------------ 123 (304)
Q Consensus 86 ~~~~~~l~~V~DGhGG~~~s~~~~~~l~~~l~~~~~~~------------------------------------------ 123 (304)
++..-.++=|==|-||.+||-|+.+.+--|..-+....
T Consensus 109 nd~knvilEIRagtGGdEAalFagDLfrMY~rYAe~kgWk~ei~s~se~~~GG~kEii~~I~G~gvys~LKfEsGvHRVQ 188 (363)
T COG0216 109 NDDKNIILEIRAGTGGDEAALFAGDLFRMYSRYAESKGWKVEILSASESELGGYKEIIASISGKGVYSRLKFESGVHRVQ 188 (363)
T ss_pred CCCcCeEEEEecCCCchHHHHHHHHHHHHHHHHHHhCCCEEEEeecCcccCCCceEEEEEEeccchhhhhhhccCcccee
Confidence 33344567778899999999999987765542110000
Q ss_pred ----CCCC----CccEEEEEEeC--Ce-EEEEeeCCcEEEEEeccccCCCCCCccccCccceEEeCCC
Q 021997 124 ----GWQD----GATAVCIWILG--RT-VFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRV 180 (304)
Q Consensus 124 ----~~~~----GtT~~~~~i~~--~~-l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~LT~d 180 (304)
.... -+|++++++-. +. -+-.+-.|-|+=.+|.+|.+|.+-..++ .++++|+-
T Consensus 189 RVP~TEsqGRIHTStaTVaVlPE~ee~~ei~I~~~DlrIDt~RsSGaGGQhVNtTd----SAVRiTHl 252 (363)
T COG0216 189 RVPATESQGRIHTSAATVAVLPEVEEVEEIEINPKDLRIDTFRSSGAGGQHVNTTD----SAVRITHL 252 (363)
T ss_pred ccccccCCCceeecceeEEeccCCCcccccccChHHceeeeeecCCCCCCCcCccc----hhheeeec
Confidence 1111 24555555542 22 3678999999999999999998766555 56666653
No 23
>PRK05589 peptide chain release factor 2; Provisional
Probab=37.81 E-value=2e+02 Score=26.83 Aligned_cols=90 Identities=20% Similarity=0.172 Sum_probs=55.0
Q ss_pred CcceEEEEEcCCCCHHHHHHHHHHHHHHHHhc---C---------------CCC--------------------------
Q 021997 88 LRCAHFAIFDGHGGRLAAEYAQKRLHANVISA---G---------------LPR-------------------------- 123 (304)
Q Consensus 88 ~~~~l~~V~DGhGG~~~s~~~~~~l~~~l~~~---~---------------~~~-------------------------- 123 (304)
..-+++-|-=|-||.+|+.|+...+--+..-. . +..
T Consensus 84 ~~~~~leI~aG~GG~Ea~~fa~~L~~mY~~~a~~~g~~~~vi~~~~~~~~g~ks~~~~i~G~~ay~~lk~E~GvHrv~r~ 163 (325)
T PRK05589 84 RNNAILTLHSGVGGTDAQDWTEMLLRMYTRWAEKKGYKVEIIDLLEGDEAGIKSVTLKITGEFAYGYLKAEKGIHRLVRI 163 (325)
T ss_pred CCCeEEEEECCCCchHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhccceEEEEEc
Confidence 34467788889999999999998775543211 0 000
Q ss_pred ------CCCCCccEEEEEEeCC-e--EEEEeeCCcEEEEEeccccCCCCCCccccCccceEEeCCCCCC
Q 021997 124 ------GWQDGATAVCIWILGR-T--VFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKA 183 (304)
Q Consensus 124 ------~~~~GtT~~~~~i~~~-~--l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~LT~dH~~ 183 (304)
...--+|+.+.++-.. . -+..+-.|-|+-.+|.+|++|.+-...+ .+++|| |.|
T Consensus 164 s~~~~~~rr~ts~a~V~VlP~~~~~~~~~i~~~dl~~~~~rssG~GGQ~VNkt~----saVrl~--H~p 226 (325)
T PRK05589 164 SPFNANGKRQTSFASVEVLPELTDDQDIEIRSEDLKIDTYRAGGAGGQHVNKTE----SAVRIT--HIP 226 (325)
T ss_pred CCCCCCCCeEeeeEEEEEecCcCccccccCCchheEEEEeeCCCCCCCccccee----eEEEEE--ECC
Confidence 0111234444443321 1 2456778999999999999987655444 566666 444
No 24
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=37.34 E-value=2.6e+02 Score=26.56 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=22.1
Q ss_pred cceEEEEEcCCCCHHHHHHHHHHHHHHH
Q 021997 89 RCAHFAIFDGHGGRLAAEYAQKRLHANV 116 (304)
Q Consensus 89 ~~~l~~V~DGhGG~~~s~~~~~~l~~~l 116 (304)
..+++-|-=|.||.+|+.++...+--+.
T Consensus 124 ~~~~leI~aG~GG~Ea~~~a~~L~~mY~ 151 (364)
T TIGR00020 124 NNAYLTIQAGAGGTEAQDWASMLYRMYL 151 (364)
T ss_pred CCeeEEEECCCCcHHHHHHHHHHHHHHH
Confidence 3467788899999999999988775543
No 25
>PRK07342 peptide chain release factor 2; Provisional
Probab=30.82 E-value=3.4e+02 Score=25.49 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=21.6
Q ss_pred cceEEEEEcCCCCHHHHHHHHHHHHHH
Q 021997 89 RCAHFAIFDGHGGRLAAEYAQKRLHAN 115 (304)
Q Consensus 89 ~~~l~~V~DGhGG~~~s~~~~~~l~~~ 115 (304)
..+++-|-=|.||.+|..++...+--+
T Consensus 88 ~~~~leI~aG~GG~Ea~~~a~~Ll~mY 114 (339)
T PRK07342 88 NDTYLEVHAGAGGTESQDWASMLLRMY 114 (339)
T ss_pred CCeeEEEECCCCcHHHHHHHHHHHHHH
Confidence 336778888999999999999877554
No 26
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=29.65 E-value=2.3e+02 Score=21.70 Aligned_cols=57 Identities=11% Similarity=0.045 Sum_probs=39.8
Q ss_pred EEcCCCccccChHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCCCCCcEEEEEEe
Q 021997 245 LGCDGLWGVFGPSDAVEFVQKLLKEG--LSVTAVSRRLVREAVLERRCKDNCTAIVIIF 301 (304)
Q Consensus 245 LaSDGl~d~l~~~ei~~iv~~~~~~~--~~~~~~a~~lv~~A~~~~~~~DNiTvivv~l 301 (304)
-.+|.+-+.++..++.+.+....... ...+.+|+.+.+..+......+-+++-+-+.
T Consensus 41 ~~~D~l~~tidY~~v~~~i~~~~~~~~~~llE~la~~Ia~~i~~~~~~v~~v~v~i~Kp 99 (116)
T TIGR00525 41 AESDDLGDTVNYAELYSAIEEIVAEKPRDLIETVAYRIADRLFADFPQVQRVKVRVSKP 99 (116)
T ss_pred hccCCchhccCHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHCCCceEEEEEEEeC
Confidence 35788889999999999888876532 3577888888887774334345555555443
No 27
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=29.19 E-value=3e+02 Score=26.16 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=22.9
Q ss_pred CcceEEEEEcCCCCHHHHHHHHHHHHHHH
Q 021997 88 LRCAHFAIFDGHGGRLAAEYAQKRLHANV 116 (304)
Q Consensus 88 ~~~~l~~V~DGhGG~~~s~~~~~~l~~~l 116 (304)
..-+++-|-=|.||.+|+.++...+-.+.
T Consensus 123 ~~~~~leI~aG~GG~Ea~lfa~~L~~mY~ 151 (367)
T PRK00578 123 ANNAILTIHAGAGGTEAQDWASMLLRMYL 151 (367)
T ss_pred cCCeEEEEecCCCcHHHHHHHHHHHHHHH
Confidence 34467788899999999999988775553
No 28
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=27.55 E-value=2e+02 Score=22.06 Aligned_cols=54 Identities=7% Similarity=0.106 Sum_probs=37.6
Q ss_pred EEcCCCccccChHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCCCCCcEEEE
Q 021997 245 LGCDGLWGVFGPSDAVEFVQKLLKEG--LSVTAVSRRLVREAVLERRCKDNCTAIV 298 (304)
Q Consensus 245 LaSDGl~d~l~~~ei~~iv~~~~~~~--~~~~~~a~~lv~~A~~~~~~~DNiTviv 298 (304)
-.||-|-+.++...+.+.+....... ...+.+|+.+.+..+........+++-|
T Consensus 42 ~~~D~l~~tidY~~l~~~i~~~~~~~~~~llE~La~~ia~~i~~~~~~v~~v~v~v 97 (118)
T cd00534 42 GESDDLADTLNYAEVAKLIKKIVEGSPFKLIETLAEEIADILLEDYPKVSAIKVKV 97 (118)
T ss_pred hccCChhhccCHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 35788888999999999888876532 4678889998888774323334444443
No 29
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=26.99 E-value=5.4e+02 Score=24.42 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=22.4
Q ss_pred cceEEEEEcCCCCHHHHHHHHHHHHHHH
Q 021997 89 RCAHFAIFDGHGGRLAAEYAQKRLHANV 116 (304)
Q Consensus 89 ~~~l~~V~DGhGG~~~s~~~~~~l~~~l 116 (304)
..+++-|-=|.||.+|..++...+-.+.
T Consensus 111 ~~~~leI~aG~GG~Ea~~~a~~Ll~mY~ 138 (360)
T TIGR00019 111 KNVILEIRAGTGGDEAAIFAGDLFRMYS 138 (360)
T ss_pred CCeEEEEECCCCcHHHHHHHHHHHHHHH
Confidence 3467788899999999999998775543
No 30
>PF02152 FolB: Dihydroneopterin aldolase; InterPro: IPR006157 Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers [].; GO: 0004150 dihydroneopterin aldolase activity, 0006760 folic acid-containing compound metabolic process; PDB: 1SQL_P 2O90_A 1B9L_A 1RSI_A 2NM2_C 1RRY_A 1RRW_A 1RS2_A 2DHN_A 1DHN_A ....
Probab=26.69 E-value=2.3e+02 Score=21.39 Aligned_cols=53 Identities=15% Similarity=0.158 Sum_probs=40.3
Q ss_pred cCCCccccChHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCCCCCcEEEEE
Q 021997 247 CDGLWGVFGPSDAVEFVQKLLKEG--LSVTAVSRRLVREAVLERRCKDNCTAIVI 299 (304)
Q Consensus 247 SDGl~d~l~~~ei~~iv~~~~~~~--~~~~~~a~~lv~~A~~~~~~~DNiTvivv 299 (304)
+|-+-+.++..++.+.+.....+. ...+.+|+.+.+..+...+..+.+++-|-
T Consensus 41 ~D~l~~tvdY~~l~~~i~~~~~~~~f~llE~la~~i~~~i~~~~~~v~~v~v~v~ 95 (113)
T PF02152_consen 41 SDDLDDTVDYAELAEAIRELVENSHFNLLETLAERIADRILKEFPQVQSVTVKVR 95 (113)
T ss_dssp HTTGGGSSHHHHHHHHHHHHHHSSEESSHHHHHHHHHHHHHHHTTTESEEEEEEE
T ss_pred ccccccccCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHhCCCccEEEEEEE
Confidence 588889999999999998877643 57899999999988865554555555443
No 31
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=26.59 E-value=2.7e+02 Score=22.36 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=28.9
Q ss_pred eeeceeEEEEecCCCeEEEEEcCCCccccChHHHHHHHHHH
Q 021997 226 VATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKL 266 (304)
Q Consensus 226 ~~~P~i~~~~l~~~d~~liLaSDGl~d~l~~~ei~~iv~~~ 266 (304)
.+.|.|....++++.--++-...|+|..++.++..++....
T Consensus 75 LP~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 115 (157)
T PF14014_consen 75 LPPPEILSVEIDEDSIKVYDEKGGWFNPITPEDQNEAQKEA 115 (157)
T ss_pred CCCcEEeeeecCccceEEEEccCCccCCCCHHHHHHHHHHH
Confidence 45788887777765544556788888888877766665554
No 32
>KOG2726 consensus Mitochondrial polypeptide chain release factor [Translation, ribosomal structure and biogenesis]
Probab=26.04 E-value=3.7e+02 Score=25.67 Aligned_cols=87 Identities=17% Similarity=0.166 Sum_probs=56.0
Q ss_pred ceEEEEEcCCCCHHHHHHHHHHHHHHHHhc------------------CCCC----------------------------
Q 021997 90 CAHFAIFDGHGGRLAAEYAQKRLHANVISA------------------GLPR---------------------------- 123 (304)
Q Consensus 90 ~~l~~V~DGhGG~~~s~~~~~~l~~~l~~~------------------~~~~---------------------------- 123 (304)
-+++-|-=|.||.+|.-|+.+.+--|..-. ++..
T Consensus 137 ~~iiev~aGaGG~Ea~ift~el~~MY~~~a~~~~w~~~~l~~~~~~~~Gi~~At~~i~G~~ayg~l~~E~GvHRv~r~p~ 216 (386)
T KOG2726|consen 137 ACIIEVRAGAGGQEAQIFTMELVDMYQKYAERLGWKARVLEKAPGESGGIKSATLEIEGESAYGYLKFEAGVHRVQRVPS 216 (386)
T ss_pred CeEEEEeCCCCcHHHHHHHHHHHHHHHHHHHhcccceeehhcCCcccccceeeeeEecccchhheeeccCcccceeecCC
Confidence 467888899999999999887664332110 0000
Q ss_pred C----CCCCccEEEEEEe----CCeEEEEeeCCcEEEEEeccccCCCCCCccccCccceEEeCCC
Q 021997 124 G----WQDGATAVCIWIL----GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRV 180 (304)
Q Consensus 124 ~----~~~GtT~~~~~i~----~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~LT~d 180 (304)
. ...-+|+.+.++- ++......-+|.|+-.+|.+|++|.+-...+ .+++|++-
T Consensus 217 ~e~~gr~htstasV~ViP~~~~~~~~~~~~~~dl~i~~~R~~G~GGQhvNktd----saVrl~Hi 277 (386)
T KOG2726|consen 217 TETSGRRHTSTASVAVIPQPGRDEVDVEIDEKDLRIETFRASGPGGQHVNKTD----SAVRLTHI 277 (386)
T ss_pred cccccccccccceEEEeccCCCCccceecCchheeEEecccCCCCcccccccc----cceEEEee
Confidence 1 1122455555554 3345677799999999999999987765555 56666543
No 33
>PRK08179 prfH peptide chain release factor-like protein; Reviewed
Probab=25.97 E-value=2e+02 Score=24.91 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=19.6
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHHH
Q 021997 92 HFAIFDGHGGRLAAEYAQKRLHANV 116 (304)
Q Consensus 92 l~~V~DGhGG~~~s~~~~~~l~~~l 116 (304)
++=|-=|.||.+|+.++.+.|--+.
T Consensus 3 ~leI~aG~Gg~Ea~~fa~~L~~my~ 27 (200)
T PRK08179 3 LLQLSSAQGPAECCLAVAKALERLL 27 (200)
T ss_pred EEEEeCCCChHHHHHHHHHHHHHHH
Confidence 4456679999999999998776554
No 34
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=24.77 E-value=1.8e+02 Score=19.65 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHH
Q 021997 257 SDAVEFVQKLLKEGLSVTAVSRRLV 281 (304)
Q Consensus 257 ~ei~~iv~~~~~~~~~~~~~a~~lv 281 (304)
++....|+...+...+..++++.|.
T Consensus 16 n~~a~~Iw~~~~g~~t~~ei~~~l~ 40 (68)
T PF05402_consen 16 NETAAFIWELLDGPRTVEEIVDALA 40 (68)
T ss_dssp -THHHHHHHH--SSS-HHHHHHHHH
T ss_pred cHHHHHHHHHccCCCCHHHHHHHHH
Confidence 3444444444444445555554443
No 35
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=24.11 E-value=4e+02 Score=21.81 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=39.4
Q ss_pred CCCeEEEEEcCCCccccChHHHHHHHHH----HHHcCCCHHHHHHHHHHHHHHhC-CCCCCcEEEEEEec
Q 021997 238 ERDHFIILGCDGLWGVFGPSDAVEFVQK----LLKEGLSVTAVSRRLVREAVLER-RCKDNCTAIVIIFR 302 (304)
Q Consensus 238 ~~d~~liLaSDGl~d~l~~~ei~~iv~~----~~~~~~~~~~~a~~lv~~A~~~~-~~~DNiTvivv~l~ 302 (304)
+++.++++..||.-.-.....+...+.. .......+.++.+.+-+... .. ....-+|++++.++
T Consensus 27 ~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~~~~~~l~~~n~~l~-~~~~~~~~~T~~~~~id 95 (193)
T smart00331 27 PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGISLSQILERLNRAIY-ENGEDGMFATLFLALYD 95 (193)
T ss_pred CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH-hcCCCCcEEEEEEEEEE
Confidence 3445888999999876665554444433 33344467887777655443 33 34456788887763
No 36
>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.
Probab=23.86 E-value=2.7e+02 Score=20.50 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=29.2
Q ss_pred CCCeEEEEEcCCCccccChHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHH
Q 021997 238 ERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEG----------LSVTAVSRRLVREAV 285 (304)
Q Consensus 238 ~~d~~liLaSDGl~d~l~~~ei~~iv~~~~~~~----------~~~~~~a~~lv~~A~ 285 (304)
..|.|+||-.+-==.+++.+|+..-++..+... .+.++.|+.|++.+.
T Consensus 8 ~~d~yVvLEp~~~Eqflt~~Ell~~Lk~~L~~~~~LP~dL~~~~s~~~qa~~Lldt~C 65 (83)
T PF12095_consen 8 QEDHYVVLEPGQPEQFLTPEELLEKLKEWLQNQDDLPPDLAKFSSVEEQAQYLLDTAC 65 (83)
T ss_dssp ----EEEEESSS-SEEE-HHHHHHHHHHHHHHTTTS-HHHHH---HHHHHHHHHHH--
T ss_pred ccCCEEEecCCCCcccCCHHHHHHHHHHHHHcCCCCCHHHHhCCCHHHHHHHHHHhce
Confidence 456688888766656899999998888776542 345677888887764
No 37
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=23.85 E-value=3.7e+02 Score=21.93 Aligned_cols=65 Identities=18% Similarity=0.166 Sum_probs=39.9
Q ss_pred CCeEEEEEcCCCccccCh----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCC-CCcEEEEEEecC
Q 021997 239 RDHFIILGCDGLWGVFGP----SDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCK-DNCTAIVIIFRH 303 (304)
Q Consensus 239 ~d~~liLaSDGl~d~l~~----~ei~~iv~~~~~~~~~~~~~a~~lv~~A~~~~~~~-DNiTvivv~l~~ 303 (304)
++.++++..|+.=.-++- -.+..+++.......+|.++.+.+-+......... --+|++++.+++
T Consensus 2 ~~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~~p~~~l~~ln~~l~~~~~~~~~~~t~~~~~~d~ 71 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGLDPEELLEALNRRLYRDLKGDNRYATACYAIIDP 71 (193)
T ss_dssp TTEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHTTTTSTTEEEEEEEEET
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhccccceEEEEEecc
Confidence 445777777765443333 34445555555666778888888776653333333 567888877754
No 38
>PRK08787 peptide chain release factor 2; Provisional
Probab=23.47 E-value=4.6e+02 Score=24.37 Aligned_cols=36 Identities=31% Similarity=0.287 Sum_probs=26.3
Q ss_pred EEEeeCCcEEEEEeccccCCCCCCccccCccceEEeCCCCCC
Q 021997 142 FVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKA 183 (304)
Q Consensus 142 ~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~LT~dH~~ 183 (304)
+-.+-.|-+.-.+|.+|++|.+-...+ .+++|+ |.|
T Consensus 171 i~i~~~dl~~~~~RssG~GGQ~VNkt~----saVri~--H~P 206 (313)
T PRK08787 171 IDINPADLRTDVYRSSGAGGQHVNKTE----SAVRIT--HIP 206 (313)
T ss_pred cccChhHeEEEEEECCCCCCCCcCCEe----eEEEEE--ECC
Confidence 445678999999999999887765444 566666 555
Done!