BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021999
         (304 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
          C Menber 5
          Length = 109

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 19 RIMGVEGDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKCP-HPQAHQAFIKLNKAFKE 77
          R +   G+  Y V+G + N ++++IKK Y KL+L  HPDK P +P+A   F ++N A   
Sbjct: 10 RSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAI 69

Query: 78 LQDPEKRKALD 88
          L D  KR   D
Sbjct: 70 LTDATKRNIYD 80


>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
          B Menber 12
          Length = 78

 Score = 51.2 bits (121), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 22 GVEGDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDP 81
          G  GD  Y+++G +   S E++KK Y +L+L  HPDK   P A +AF  +  A+  L +P
Sbjct: 4  GSSGDY-YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNP 62

Query: 82 EKRKALDE 89
          EKRK  D+
Sbjct: 63 EKRKQYDQ 70


>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
 pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
          Length = 210

 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Query: 29 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPH-PQAHQAFIKLNKAFKELQDPEKRKAL 87
          Y ++G +   S+  I++ + KL+L +HPDK P+ P AH  F+K+N+A++ L+D + RK  
Sbjct: 5  YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64

Query: 88 D 88
          D
Sbjct: 65 D 65


>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
          Length = 780

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Query: 29 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPH-PQAHQAFIKLNKAFKELQDPEKRKAL 87
          Y ++G +   S+  I++ + KL+L +HPDK P+ P AH  F+K+N+A++ L+D + RK  
Sbjct: 24 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 83

Query: 88 D 88
          D
Sbjct: 84 D 84


>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
          Protein, Mouse Hypothetical Mkiaa0962
          Length = 88

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query: 28 PYDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDPEKRKAL 87
          PY V+G +   S  +IKK Y KL+   HPDK   P A   FI+++KA++ L + EKR   
Sbjct: 19 PYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNY 78

Query: 88 D 88
          D
Sbjct: 79 D 79


>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
          Domain From Homo Sapiens
          Length = 71

 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)

Query: 29 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDPEKRKALD 88
          YDV+G   N + E +KK Y KL+L  HPDK  +P   + F ++++A++ L D +KR+  D
Sbjct: 9  YDVLGVKPNATQEELKKAYRKLALKYHPDK--NPNEGEKFKQISQAYEVLSDAKKRELYD 66


>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
          B Menber 9
          Length = 88

 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 29 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDPEKRKALD 88
          YD++G   + S   IKK + KL++  HPDK   P A   F ++ +A++ L D  +RK  D
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69


>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
          Length = 77

 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%)

Query: 29 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDPEKRKALD 88
          Y  +G     S E IK+ Y + +L  HPDK   P A + F ++ +A+  L DP KR+  D
Sbjct: 6  YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFD 65


>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
          Subfamily B Member 8
          Length = 92

 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 29 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCP--HPQAHQAFIKLNKAFKELQDPEKRKA 86
          Y+V+G   + S E+IKK Y KL+L  HPDK P    +A + F  +++A++ L D +KR  
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71

Query: 87 LD 88
           D
Sbjct: 72 YD 73


>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
          Length = 73

 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 29 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDPEKRKALD 88
          YDV+G   + S   +KK Y K++L  HPDK  +P   + F ++++A++ L D +KR+  D
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDK--NPDGAEQFKQISQAYEVLSDEKKRQIYD 68

Query: 89 E 89
          +
Sbjct: 69 Q 69


>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
          Human Tid1 Protein
          Length = 79

 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 22 GVEGDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKCP-HPQAHQAFIKLNKAFKELQD 80
          G  GD  Y ++G   N S + IKK Y++L+   HPD     P+A + F +L +A++ L D
Sbjct: 4  GSSGDY-YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSD 62

Query: 81 PEKRKALD 88
            KRK  D
Sbjct: 63 EVKRKQYD 70


>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
          Protein Hcg3, A Hypothetical Protein Tmp_locus_21
          Length = 82

 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 29 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPH--PQAHQAFIKLNKAFKELQDPEKRKA 86
          Y+V+      S+E IKK Y KL+L  HPDK P    +A + F ++ +A++ L D +KR  
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71

Query: 87 LD 88
           D
Sbjct: 72 YD 73


>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
          Protein
          Length = 94

 Score = 40.0 bits (92), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 7/67 (10%)

Query: 29 YDVIGANHNMSAENIKKRYWKLSLFVHPDK-------CPHPQAHQAFIKLNKAFKELQDP 81
          Y ++GA+ + +  ++K++Y KL L  HPDK           +  Q FI++++A+K L + 
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

Query: 82 EKRKALD 88
          E +K  D
Sbjct: 79 ETKKKYD 85


>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
          Saccharomyces Cerevisiae
          Length = 92

 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 4/62 (6%)

Query: 29 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAH-QAFIKLNKAFKELQDPEKRKAL 87
          YD++G + + + + +KK Y K +L  HPDK   P    + F ++++AF+ L DP+KR+  
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDK---PTGDTEKFKEISEAFEILNDPQKREIY 67

Query: 88 DE 89
          D+
Sbjct: 68 DQ 69


>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
          Ras- Associated Protein Rap1
          Length = 90

 Score = 38.9 bits (89), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 29 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAF 68
          +D++G     S + + K Y KL++ +HPDKC  P +  AF
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAF 69


>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
          Length = 155

 Score = 37.0 bits (84), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 7/67 (10%)

Query: 29 YDVIGANHNMSAENIKKRYWKLSLFVHPDK----CPH---PQAHQAFIKLNKAFKELQDP 81
          Y ++GA+ + +  ++K++Y KL L  HPDK     P     +  Q FI++++A+K L + 
Sbjct: 13 YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72

Query: 82 EKRKALD 88
          E ++  D
Sbjct: 73 ETKREYD 79


>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
          Length = 114

 Score = 36.6 bits (83), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 25  GDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKC---PHPQ-AHQAFIKLNKAFKELQD 80
           G+  +  +G    ++ E +KK Y K  L VHPDK    P+ Q A   F++LN A+ E ++
Sbjct: 48  GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 107


>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
          Length = 99

 Score = 36.6 bits (83), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 29 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQ--AHQAFIKLNKAFKELQDPEKRKA 86
          Y+++    + SA++IKK Y + +L  HPDK P  +  A + F ++ +A++ L D  KR+ 
Sbjct: 5  YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64

Query: 87 LD 88
           D
Sbjct: 65 YD 66


>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
          N-Terminal Fragment (Residues 1-78) Of The Molecular
          Chaperone Dnaj, Nmr, 20 Structures
          Length = 77

 Score = 36.2 bits (82), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 29 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCP-HPQAHQAFIKLNKAFKELQDPEKRKAL 87
          Y+++G +       I+K Y +L++  HPD+     +A   F ++ +A++ L D +KR A 
Sbjct: 6  YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65

Query: 88 DE 89
          D+
Sbjct: 66 DQ 67


>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
          Escherichia Coli N-Terminal Fragment (Residues 2-108)
          Of The Molecular Chaperone Dnaj, 20 Structures
          Length = 107

 Score = 36.2 bits (82), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 29 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQA-FIKLNKAFKELQDPEKRKAL 87
          Y+++G +       I+K Y +L++  HPD+    +  +A F ++ +A++ L D +KR A 
Sbjct: 6  YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65

Query: 88 DE 89
          D+
Sbjct: 66 DQ 67


>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
           Binding Domain Of Bovine Auxilin
          Length = 182

 Score = 35.8 bits (81), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 25  GDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKC---PHPQ-AHQAFIKLNKAFKELQD 80
           G+  +  +G    ++ E +KK Y K  L VHPDK    P+ Q A   F++LN A+ E ++
Sbjct: 116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 175


>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
          N-Terminal Fragment (Residues 1-104) Of The Molecular
          Chaperone Dnaj, Nmr, 20 Structures
          Length = 103

 Score = 35.8 bits (81), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 29 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCP-HPQAHQAFIKLNKAFKELQDPEKRKAL 87
          Y+++G +       I+K Y +L++  HPD+     +A   F ++ +A++ L D +KR A 
Sbjct: 6  YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65

Query: 88 DE 89
          D+
Sbjct: 66 DQ 67


>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
          Length = 450

 Score = 35.0 bits (79), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 29  YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPH----PQAHQAFIKLNKAFKELQDPEKR 84
           Y ++G   N   + I K Y KL+L  HPD   +     +A + FI +  A + L DPE R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXR 444

Query: 85  KALDE 89
           K  D+
Sbjct: 445 KKFDD 449


>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
 pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
          Length = 101

 Score = 34.7 bits (78), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 25 GDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKC---PHPQ-AHQAFIKLNKAFKELQD 80
          G+  +  +G    ++ E +KK Y K  L VHPDK    P+ Q A   F +LN A+ E ++
Sbjct: 35 GETKWKPVGXADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKXIFXELNDAWSEFEN 94


>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
 pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
 pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
          Length = 450

 Score = 34.7 bits (78), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 29  YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPH----PQAHQAFIKLNKAFKELQDPEKR 84
           Y ++G   N   + I K Y KL+L  HPD   +     +A + FI +  A + L DPE R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444

Query: 85  KALDE 89
           K  D+
Sbjct: 445 KKFDD 449


>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
          Williams- Beuren Syndrome Chromosome Region 18 Protein
          Length = 99

 Score = 33.1 bits (74), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 24 EGDCPY------DVIGANHNMSAENIKKRYWKLSLFVHPDK-CPHPQAHQAFIKLNKAFK 76
          +GDC Y      D++G     +   IK  Y++     HPD+     +A + F ++++A+ 
Sbjct: 9  QGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYV 68

Query: 77 ELQDPEKRKALDEKIKLKEE 96
           L     R+  D  +   E+
Sbjct: 69 VLGSATLRRKYDRGLLSDED 88


>pdb|2QWN|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
          Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
          (810-910aa)d876c In The AdpPi State
          Length = 94

 Score = 32.3 bits (72), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 25 GDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKC---PHPQ-AHQAFIKLNKAFKELQD 80
          G+  +  +G    ++ E +KK Y K  L VHP K    P+ Q A   F++LN A+ E ++
Sbjct: 33 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 92


>pdb|2QWO|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
          Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
          (810-910aa)d876c In The AdpPi Form #1
 pdb|2QWP|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
          Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
          (810-910aa)d876c In The AdpPi Form #2
 pdb|2QWQ|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
          Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
          (810-910aa)d876c In The Amppnp Hydrolyzed Form
 pdb|2QWR|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
          Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
          (810-910aa)d876c In The Amppnp Intact Form
          Length = 92

 Score = 32.3 bits (72), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 25 GDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKC---PHPQ-AHQAFIKLNKAFKELQD 80
          G+  +  +G    ++ E +KK Y K  L VHP K    P+ Q A   F++LN A+ E ++
Sbjct: 32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91


>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
          Escherichia Coli Cbpa
          Length = 73

 Score = 32.0 bits (71), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 30/61 (49%)

Query: 29 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDPEKRKALD 88
          Y ++G       + IK  Y +L+   HPD    P A   F ++ +A++ L D ++R   D
Sbjct: 8  YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYD 67

Query: 89 E 89
          +
Sbjct: 68 Q 68


>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
          Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
          Resolution.
 pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
          Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
          Resolution
          Length = 329

 Score = 29.3 bits (64), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 29 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDPEKRKALD 88
          Y ++G       + IK  Y +L+   HPD      A   F  L +A++ L+D ++R   D
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYD 90

Query: 89 E 89
          +
Sbjct: 91 Q 91


>pdb|2ZOF|A Chain A, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
           Mn Bestatin
 pdb|2ZOF|B Chain B, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
           Mn Bestatin
 pdb|2ZOG|A Chain A, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
           Zn Bestatin
 pdb|2ZOG|B Chain B, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
           Zn Bestatin
          Length = 479

 Score = 28.9 bits (63), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 33  GANHNMSAENI--KKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDPEKRKA 86
           GA     A+ +  +K   K S+ + PD  P   + Q    L+K F ELQ P K K 
Sbjct: 325 GAFSGSGAKTVIPRKVVGKFSIRLVPDMIPEVVSEQVSSYLSKKFAELQSPNKFKV 380


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.129    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,459,340
Number of Sequences: 62578
Number of extensions: 321708
Number of successful extensions: 755
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 709
Number of HSP's gapped (non-prelim): 50
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)