BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022002
         (304 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1MHZ|D Chain D, Methane Monooxygenase Hydroxylase
 pdb|1MHY|D Chain D, Methane Monooxygenase Hydroxylase
          Length = 521

 Score = 32.7 bits (73), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 175 TGFIIPLLMLFGSQKGFLQ--PQLPFIPFAVLLGPYLLLLSIQILTEMLTWHWQSPVWLV 232
           +GFI    +L      ++    Q+PFIP        L +         LT  W    WL+
Sbjct: 395 SGFIPYQWLLANGHDVYIDRVSQVPFIPSLAKGTGSLRVHEFNGKKHSLTDDWGERQWLI 454

Query: 233 TPVVYESYRVLQLMRGLKLGAELSAPAWIVHTVR 266
            P  YE + V +   G +L +E+ A     H VR
Sbjct: 455 EPERYECHNVFEQYEGREL-SEVIAEG---HGVR 484


>pdb|3TF5|A Chain A, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
 pdb|3TF5|B Chain B, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
 pdb|3TF5|C Chain C, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
          Length = 493

 Score = 28.5 bits (62), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 24/45 (53%)

Query: 76  KNSNIFETLSSDNTAEAPATKTEEVTDANNQPLVQLQFLKWPMWL 120
           +NSN ++ ++  +T    A     + DAN +P + LQ L  P +L
Sbjct: 118 QNSNGYKIVTEKSTPVRAAESIRRIFDANTKPNLNLQVLSNPEFL 162


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.135    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,717,984
Number of Sequences: 62578
Number of extensions: 343689
Number of successful extensions: 722
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 721
Number of HSP's gapped (non-prelim): 4
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)