Query 022002
Match_columns 304
No_of_seqs 35 out of 37
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 12:31:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022002.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022002hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtj1 f.23.32.1 (J:7-40) Pho 22.5 17 0.0012 23.0 1.4 22 115-136 1-25 (34)
2 d1ooaa2 b.2.5.3 (A:38-250) p50 8.1 1.1E+02 0.008 25.5 3.0 39 20-58 23-69 (213)
3 d1nekc_ f.21.2.2 (C:) Succinat 4.3 1.2E+02 0.0091 22.0 1.0 38 103-141 6-45 (129)
4 d1q90d_ f.32.1.1 (D:) Subunit 3.6 8.3E+02 0.06 18.4 5.7 40 146-185 58-103 (156)
5 d1aiea_ a.53.1.1 (A:) p53 tetr 3.6 1.4E+02 0.01 18.0 0.6 16 237-254 13-28 (31)
6 d1nyra1 c.51.1.1 (A:533-645) T 2.9 1.4E+02 0.0099 20.9 -0.1 7 115-121 6-12 (113)
7 d1ikna2 b.2.5.3 (A:19-191) p65 2.8 4.2E+02 0.031 20.8 3.0 38 19-56 20-65 (173)
8 d1wdka2 a.100.1.3 (A:621-715) 2.8 1.8E+02 0.013 20.3 0.5 20 113-132 41-63 (95)
9 d1bvoa_ b.2.5.3 (A:) Dorsal ho 2.5 3E+02 0.022 21.8 1.7 27 19-45 20-47 (175)
10 d2o9ca1 d.110.2.1 (A:135-321) 2.4 3.8E+02 0.028 20.2 2.1 19 220-238 128-146 (187)
No 1
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=22.47 E-value=17 Score=22.99 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=12.5
Q ss_pred chhhhhhhhHhHh---hcchhhhhh
Q 022002 115 KWPMWLLGPCILL---GTDCIFNIG 136 (304)
Q Consensus 115 k~plWLlGPsvLl---gtealFyiG 136 (304)
+-|+|+.|-..=+ +.=.+||.|
T Consensus 1 riPLWlv~tv~G~~vi~~vG~FfYG 25 (34)
T d2axtj1 1 RIPLWIVATVAGMGVIVIVGLFFYG 25 (34)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEeeehhhhhhHhheeeeeee
Confidence 3599999865322 333445444
No 2
>d1ooaa2 b.2.5.3 (A:38-250) p50 subunit of NF-kappa B (NFKB), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.13 E-value=1.1e+02 Score=25.47 Aligned_cols=39 Identities=10% Similarity=-0.203 Sum_probs=27.1
Q ss_pred ccccccccccCCc-ccccccCcccccc------cceec-cCCCCCCC
Q 022002 20 LPRSMRLVNFKSV-IPVVTSPCTHVKH------SPLCC-TKLTPWEP 58 (304)
Q Consensus 20 ~~rs~~l~~~~~~-~~~~~~p~~~~~~------~~~~c-~k~~~we~ 58 (304)
+.||.|.+.-.+. .++-|||.++|.| ..++| ||..|-.|
T Consensus 23 EgrShGsipG~~St~~~KTyPtV~i~ny~G~a~V~vsLVT~d~p~rp 69 (213)
T d1ooaa2 23 EGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVTNGKNIHL 69 (213)
T ss_dssp GCSCCCCCCBTTCCSSSCCCCEEEEESCCSCEEEEEEEECCSSSCCB
T ss_pred cCCCCCCCCCCCCCCCCCcCceEEEecCCCCEEEEEEEEeCCCCCCc
Confidence 6789998865555 5567999999988 23344 77766443
No 3
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=4.32 E-value=1.2e+02 Score=22.04 Aligned_cols=38 Identities=21% Similarity=0.412 Sum_probs=22.6
Q ss_pred ccCcc-cccccccchhhhhhhhHhHh-hcchhhhhhHHHHH
Q 022002 103 ANNQP-LVQLQFLKWPMWLLGPCILL-GTDCIFNIGATLFL 141 (304)
Q Consensus 103 ~~~~~-~~~~~~~k~plWLlGPsvLl-gtealFyiGatlFL 141 (304)
+++|| +..+|..|||+--+= |++= .+-++.++|+.++.
T Consensus 6 ~~~RP~sPhL~iyk~~~t~~~-SI~HRisGv~l~~~~~~~~ 45 (129)
T d1nekc_ 6 KKQRPVNLDLQTIRFPITAIA-SILHRVSGVITFVAVGILL 45 (129)
T ss_dssp CCCCCBCCCGGGSCCCHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCcceeCchHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 56777 889999999974332 3332 44444444444443
No 4
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.59 E-value=8.3e+02 Score=18.43 Aligned_cols=40 Identities=10% Similarity=-0.052 Sum_probs=24.7
Q ss_pred ccccccCCCccCCCCCCCCcchhhhhhh------hhhhHHhHHhhh
Q 022002 146 SCARSKNTTRACNSKPPFSYKFWNMVAN------TTGFIIPLLMLF 185 (304)
Q Consensus 146 ~~~Rp~~~~~~~~~~~P~syk~W~~~~~------ilG~viPlv~m~ 185 (304)
...-|.|+..+-+.-.|-||=.|..... +.|++++..+.+
T Consensus 58 ~lgepANP~~TP~hI~PEWYFL~~yaiLR~iP~kl~GVi~~~~~i~ 103 (156)
T d1q90d_ 58 AMGEPANPFATPLEILPEWYFYPVFQILRVVPNKLLGVLLMAAVPA 103 (156)
T ss_dssp BCCCBCCTTCCCSSCCCCGGGHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCCCcchhhHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 3567888886655566889977655433 556555544433
No 5
>d1aiea_ a.53.1.1 (A:) p53 tetramerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.55 E-value=1.4e+02 Score=18.05 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=10.1
Q ss_pred hhhHHHHHHHhhcccccc
Q 022002 237 YESYRVLQLMRGLKLGAE 254 (304)
Q Consensus 237 YevYRl~QL~RglqLv~~ 254 (304)
||++| .||+|++|-+.
T Consensus 13 femfr--elnealelkda 28 (31)
T d1aiea_ 13 FEMFR--ELNEALELKDA 28 (31)
T ss_dssp HHHHH--HHHHHHHHHHH
T ss_pred HHHHH--HHHHHHhhhhc
Confidence 44544 57888877654
No 6
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=2.86 E-value=1.4e+02 Score=20.90 Aligned_cols=7 Identities=43% Similarity=1.293 Sum_probs=4.7
Q ss_pred chhhhhh
Q 022002 115 KWPMWLL 121 (304)
Q Consensus 115 k~plWLl 121 (304)
|||.||-
T Consensus 6 ~~P~~lA 12 (113)
T d1nyra1 6 AFPTWLA 12 (113)
T ss_dssp CCCTTTC
T ss_pred CCCcccC
Confidence 6777763
No 7
>d1ikna2 b.2.5.3 (A:19-191) p65 subunit of NF-kappa B (NFKB), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.81 E-value=4.2e+02 Score=20.76 Aligned_cols=38 Identities=18% Similarity=0.088 Sum_probs=25.2
Q ss_pred eccccccccccCCc-ccccccCcccccc------cceec-cCCCCC
Q 022002 19 TLPRSMRLVNFKSV-IPVVTSPCTHVKH------SPLCC-TKLTPW 56 (304)
Q Consensus 19 ~~~rs~~l~~~~~~-~~~~~~p~~~~~~------~~~~c-~k~~~w 56 (304)
.+.||.|.++-.+. ...=+||.++|.+ ..++| |+..|-
T Consensus 20 ~Eg~s~Gsi~G~~s~~~~kt~PtV~l~ny~gpa~i~vslvT~d~~~ 65 (173)
T d1ikna2 20 CEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPH 65 (173)
T ss_dssp TTCSCSCCCCBTTCCSSCCCCCEEEEESCCSSCEEEEEEECSSSSC
T ss_pred ccCCCCCCCccccCCCCCCcCCEEEEecCCCcEEEEEEEEECCCCC
Confidence 46778888875443 4556999999977 23333 776553
No 8
>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}
Probab=2.81 E-value=1.8e+02 Score=20.29 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=15.2
Q ss_pred ccchhhhhhhhHhHh---hcchh
Q 022002 113 FLKWPMWLLGPCILL---GTDCI 132 (304)
Q Consensus 113 ~~k~plWLlGPsvLl---gteal 132 (304)
-+-+|+|..||.-+. |.|.+
T Consensus 41 g~GfP~~~gGp~~~~D~~G~~~~ 63 (95)
T d1wdka2 41 GIGFPLFRGGALRYIDSIGVAEF 63 (95)
T ss_dssp HTCCCGGGCCHHHHHHHHCHHHH
T ss_pred HccCChhhCcHHHHHHHHCHHHH
Confidence 467899999999887 55533
No 9
>d1bvoa_ b.2.5.3 (A:) Dorsal homologue Gambif1 {African malaria mosquito (Anopheles gambiae) [TaxId: 7165]}
Probab=2.55 E-value=3e+02 Score=21.78 Aligned_cols=27 Identities=19% Similarity=0.009 Sum_probs=20.4
Q ss_pred eccccccccccCCc-ccccccCcccccc
Q 022002 19 TLPRSMRLVNFKSV-IPVVTSPCTHVKH 45 (304)
Q Consensus 19 ~~~rs~~l~~~~~~-~~~~~~p~~~~~~ 45 (304)
.+.||.|.+.-.+. ...=+||.++|.+
T Consensus 20 ~Eg~s~Gsi~G~~s~~~~kt~PtV~l~n 47 (175)
T d1bvoa_ 20 CEGRSAGSIPGVNTTAEQKTFPSIQVHG 47 (175)
T ss_dssp GGCSCCCCCCBTTCCSSSCCCCEEEEES
T ss_pred ccCCCCCCCcccccCCCCCcCCeEEEec
Confidence 46778888776554 5556999999988
No 10
>d2o9ca1 d.110.2.1 (A:135-321) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}
Probab=2.37 E-value=3.8e+02 Score=20.17 Aligned_cols=19 Identities=16% Similarity=-0.055 Sum_probs=0.0
Q ss_pred HHhhhcCCceeeeeeeehh
Q 022002 220 MLTWHWQSPVWLVTPVVYE 238 (304)
Q Consensus 220 ~lt~~~kSPVWpvVPvIYe 238 (304)
.++.+++.-+|++|||+++
T Consensus 128 ~~L~~~~vkA~L~vPI~~~ 146 (187)
T d2o9ca1 128 QYLRNMGVGSSLSVSVVVG 146 (187)
T ss_dssp HHHHHTTCSEEEEEEEEET
T ss_pred HHHHhcCCCeEEEEEEEEC
Done!