Query 022005
Match_columns 304
No_of_seqs 246 out of 1783
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 07:18:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4536 CorB Putative Mg2+ and 100.0 2.7E-56 5.7E-61 403.1 17.8 277 12-303 2-296 (423)
2 TIGR03520 GldE gliding motilit 100.0 1.7E-54 3.8E-59 412.8 29.6 267 20-303 2-283 (408)
3 PRK11573 hypothetical protein; 100.0 7.3E-54 1.6E-58 408.6 27.6 264 23-303 2-283 (413)
4 COG1253 TlyC Hemolysins and re 100.0 4E-49 8.7E-54 378.7 29.5 277 11-303 2-300 (429)
5 PF01595 DUF21: Domain of unkn 100.0 2.8E-29 6.1E-34 214.6 21.5 169 15-191 2-183 (183)
6 KOG2118 Predicted membrane pro 100.0 2.8E-29 6E-34 243.2 4.4 292 4-302 4-301 (498)
7 PRK15094 magnesium/cobalt effl 99.9 1.7E-22 3.7E-27 184.9 11.1 137 153-303 23-161 (292)
8 COG4535 CorC Putative Mg2+ and 99.9 3.3E-22 7.1E-27 171.5 5.4 141 149-303 19-161 (293)
9 TIGR00400 mgtE Mg2+ transporte 99.2 2.3E-11 4.9E-16 118.1 9.4 125 164-303 89-224 (449)
10 TIGR01302 IMP_dehydrog inosine 99.2 3.6E-11 7.8E-16 116.6 10.3 122 164-303 44-173 (450)
11 COG2524 Predicted transcriptio 99.1 3.1E-11 6.7E-16 105.6 4.0 99 195-303 163-263 (294)
12 COG4109 Predicted transcriptio 99.1 2.3E-10 5E-15 104.1 6.5 101 191-300 170-275 (432)
13 COG3448 CBS-domain-containing 99.0 1E-08 2.2E-13 91.6 15.0 125 164-301 202-342 (382)
14 PRK05567 inosine 5'-monophosph 99.0 1.4E-09 3.1E-14 106.5 10.1 121 164-303 51-177 (486)
15 PRK10892 D-arabinose 5-phospha 98.9 2.7E-09 5.9E-14 99.3 6.3 95 202-303 200-298 (326)
16 PF00571 CBS: CBS domain CBS d 98.8 2.8E-09 6E-14 73.0 3.9 54 206-263 1-54 (57)
17 cd04605 CBS_pair_MET2_assoc Th 98.8 1.8E-08 3.9E-13 77.7 6.2 82 215-303 3-84 (110)
18 cd04623 CBS_pair_10 The CBS do 98.7 2.3E-08 4.9E-13 77.2 6.6 82 215-303 2-88 (113)
19 cd04626 CBS_pair_13 The CBS do 98.7 3.1E-08 6.7E-13 76.6 6.2 82 215-303 2-86 (111)
20 PRK01862 putative voltage-gate 98.7 2.1E-08 4.6E-13 100.3 6.1 94 201-303 444-541 (574)
21 PRK11543 gutQ D-arabinose 5-ph 98.7 1.9E-08 4.1E-13 93.4 5.2 94 203-303 196-292 (321)
22 TIGR01137 cysta_beta cystathio 98.7 3E-08 6.4E-13 96.5 6.6 94 201-303 332-429 (454)
23 cd04603 CBS_pair_KefB_assoc Th 98.7 7.6E-08 1.6E-12 74.8 7.5 82 215-303 2-85 (111)
24 cd04630 CBS_pair_17 The CBS do 98.7 7E-08 1.5E-12 75.1 7.3 82 215-302 2-88 (114)
25 COG3620 Predicted transcriptio 98.7 1.9E-08 4.1E-13 82.2 3.7 108 183-300 39-156 (187)
26 cd04600 CBS_pair_HPP_assoc Thi 98.6 9.1E-08 2E-12 75.3 6.9 82 215-303 3-98 (124)
27 cd04618 CBS_pair_5 The CBS dom 98.6 1.3E-07 2.7E-12 72.4 7.4 70 215-303 2-71 (98)
28 cd04613 CBS_pair_SpoIVFB_EriC_ 98.6 6.2E-08 1.3E-12 74.9 5.5 82 215-303 2-87 (114)
29 cd04643 CBS_pair_30 The CBS do 98.6 8.3E-08 1.8E-12 74.6 6.1 81 215-302 2-91 (116)
30 cd04596 CBS_pair_DRTGG_assoc T 98.6 9.5E-08 2.1E-12 73.6 6.4 80 214-302 2-81 (108)
31 cd04641 CBS_pair_28 The CBS do 98.6 1.4E-07 3E-12 74.2 6.9 82 215-303 2-94 (120)
32 cd04803 CBS_pair_15 The CBS do 98.6 1E-07 2.2E-12 74.9 6.0 82 215-303 2-96 (122)
33 PRK07807 inosine 5-monophospha 98.6 1E-07 2.2E-12 93.0 7.0 91 202-303 87-177 (479)
34 cd04619 CBS_pair_6 The CBS dom 98.6 1.9E-07 4E-12 72.8 6.9 82 215-303 2-88 (114)
35 TIGR00393 kpsF KpsF/GutQ famil 98.6 9E-08 2E-12 86.5 5.8 92 204-303 155-249 (268)
36 cd04631 CBS_pair_18 The CBS do 98.6 1.2E-07 2.5E-12 74.9 5.8 83 215-303 2-99 (125)
37 cd04639 CBS_pair_26 The CBS do 98.5 1.4E-07 3E-12 72.8 5.4 82 215-303 2-85 (111)
38 cd04592 CBS_pair_EriC_assoc_eu 98.5 1.8E-07 3.8E-12 75.9 6.2 82 215-303 2-107 (133)
39 cd04588 CBS_pair_CAP-ED_DUF294 98.5 2E-07 4.4E-12 71.7 6.3 81 215-303 2-84 (110)
40 cd04621 CBS_pair_8 The CBS dom 98.5 1.8E-07 3.8E-12 75.7 6.2 81 215-302 2-109 (135)
41 cd04612 CBS_pair_SpoIVFB_EriC_ 98.5 1.9E-07 4.1E-12 71.9 6.0 81 215-303 2-85 (111)
42 cd04611 CBS_pair_PAS_GGDEF_DUF 98.5 2.5E-07 5.4E-12 71.2 6.5 80 215-302 2-84 (111)
43 cd04624 CBS_pair_11 The CBS do 98.5 2.7E-07 5.8E-12 71.3 6.4 81 215-302 2-85 (112)
44 cd04638 CBS_pair_25 The CBS do 98.5 3.6E-07 7.8E-12 70.0 7.0 80 215-303 2-81 (106)
45 cd04629 CBS_pair_16 The CBS do 98.5 2E-07 4.3E-12 72.2 5.5 82 215-303 2-89 (114)
46 cd04800 CBS_pair_CAP-ED_DUF294 98.5 3.1E-07 6.6E-12 70.8 6.4 81 215-303 2-86 (111)
47 cd04632 CBS_pair_19 The CBS do 98.5 2.5E-07 5.5E-12 73.5 6.0 82 215-303 2-100 (128)
48 cd04593 CBS_pair_EriC_assoc_ba 98.5 3.2E-07 6.9E-12 71.4 6.3 82 215-303 2-87 (115)
49 cd04642 CBS_pair_29 The CBS do 98.5 3.8E-07 8.3E-12 72.3 6.9 82 215-303 2-100 (126)
50 cd04636 CBS_pair_23 The CBS do 98.5 2.6E-07 5.6E-12 73.9 5.8 81 215-302 2-106 (132)
51 PRK07107 inosine 5-monophospha 98.5 4E-07 8.7E-12 89.3 8.2 81 217-303 108-192 (502)
52 cd04590 CBS_pair_CorC_HlyC_ass 98.5 3.2E-07 6.9E-12 70.7 6.0 83 214-303 1-85 (111)
53 PTZ00314 inosine-5'-monophosph 98.5 4.4E-07 9.5E-12 89.0 8.2 100 190-303 87-190 (495)
54 cd04635 CBS_pair_22 The CBS do 98.5 3.8E-07 8.1E-12 71.6 6.4 82 215-303 2-96 (122)
55 cd04599 CBS_pair_GGDEF_assoc2 98.5 5.7E-07 1.2E-11 68.5 7.1 79 215-303 2-80 (105)
56 cd04595 CBS_pair_DHH_polyA_Pol 98.5 3.8E-07 8.3E-12 70.3 6.1 81 215-303 3-85 (110)
57 cd04583 CBS_pair_ABC_OpuCA_ass 98.5 5.1E-07 1.1E-11 69.2 6.6 80 215-302 3-82 (109)
58 cd04594 CBS_pair_EriC_assoc_ar 98.4 6.4E-07 1.4E-11 68.6 7.0 75 218-303 5-79 (104)
59 cd04582 CBS_pair_ABC_OpuCA_ass 98.4 6.5E-07 1.4E-11 68.4 7.0 79 215-303 2-80 (106)
60 cd04589 CBS_pair_CAP-ED_DUF294 98.4 4.6E-07 1E-11 69.9 6.2 81 215-303 2-86 (111)
61 cd04586 CBS_pair_BON_assoc Thi 98.4 4E-07 8.6E-12 73.2 5.9 82 215-303 3-110 (135)
62 cd04615 CBS_pair_2 The CBS dom 98.4 5E-07 1.1E-11 69.9 6.3 80 216-302 3-86 (113)
63 PLN02274 inosine-5'-monophosph 98.4 6.4E-07 1.4E-11 88.0 8.3 100 190-303 91-194 (505)
64 cd04801 CBS_pair_M50_like This 98.4 4.5E-07 9.7E-12 70.4 5.8 82 215-303 2-88 (114)
65 cd04585 CBS_pair_ACT_assoc2 Th 98.4 5.8E-07 1.2E-11 70.1 6.4 81 215-303 2-96 (122)
66 cd04584 CBS_pair_ACT_assoc Thi 98.4 4.3E-07 9.3E-12 71.1 5.6 82 215-303 2-96 (121)
67 cd04610 CBS_pair_ParBc_assoc T 98.4 8.7E-07 1.9E-11 67.7 7.1 79 215-303 3-81 (107)
68 cd04608 CBS_pair_PALP_assoc Th 98.4 6.1E-07 1.3E-11 71.4 6.2 79 215-300 3-85 (124)
69 cd04601 CBS_pair_IMPDH This cd 98.4 9.7E-07 2.1E-11 67.7 7.0 81 215-303 3-84 (110)
70 cd04637 CBS_pair_24 The CBS do 98.4 3.5E-07 7.6E-12 71.8 4.5 81 215-303 2-96 (122)
71 cd04591 CBS_pair_EriC_assoc_eu 98.4 5.7E-07 1.2E-11 69.4 5.5 77 214-303 2-80 (105)
72 cd04627 CBS_pair_14 The CBS do 98.4 6.2E-07 1.3E-11 70.8 5.7 83 215-303 2-97 (123)
73 cd04587 CBS_pair_CAP-ED_DUF294 98.4 8.1E-07 1.8E-11 68.6 6.3 81 215-303 2-87 (113)
74 cd04604 CBS_pair_KpsF_GutQ_ass 98.4 5.6E-07 1.2E-11 69.5 5.3 81 215-302 3-87 (114)
75 cd04607 CBS_pair_NTP_transfera 98.4 1.1E-06 2.3E-11 68.2 6.6 82 215-303 3-87 (113)
76 cd04802 CBS_pair_3 The CBS dom 98.4 1.1E-06 2.3E-11 67.8 6.6 81 215-303 2-87 (112)
77 cd04617 CBS_pair_4 The CBS dom 98.4 8.7E-07 1.9E-11 69.5 6.1 82 215-303 2-89 (118)
78 cd04609 CBS_pair_PALP_assoc2 T 98.3 9.3E-07 2E-11 67.7 5.9 80 215-302 2-85 (110)
79 cd04622 CBS_pair_9 The CBS dom 98.3 1.5E-06 3.3E-11 67.0 7.1 80 215-302 2-86 (113)
80 cd04598 CBS_pair_GGDEF_assoc T 98.3 9.1E-07 2E-11 69.0 5.5 81 215-303 2-90 (119)
81 cd04634 CBS_pair_21 The CBS do 98.3 8.5E-07 1.8E-11 72.3 5.5 81 215-303 2-118 (143)
82 cd04633 CBS_pair_20 The CBS do 98.3 1.3E-06 2.8E-11 68.4 6.4 80 215-302 2-95 (121)
83 cd04640 CBS_pair_27 The CBS do 98.3 1.3E-06 2.9E-11 69.3 5.6 82 215-303 2-99 (126)
84 cd04614 CBS_pair_1 The CBS dom 98.3 3E-06 6.4E-11 64.3 7.1 69 215-303 2-70 (96)
85 cd02205 CBS_pair The CBS domai 98.3 1.9E-06 4.1E-11 65.5 6.0 82 215-303 2-87 (113)
86 TIGR01303 IMP_DH_rel_1 IMP deh 98.2 2E-06 4.4E-11 83.8 6.8 90 202-303 86-175 (475)
87 cd04602 CBS_pair_IMPDH_2 This 98.2 3E-06 6.6E-11 65.8 6.3 82 215-303 3-88 (114)
88 cd04606 CBS_pair_Mg_transporte 98.2 2.6E-06 5.7E-11 65.6 5.7 75 219-302 2-81 (109)
89 cd04625 CBS_pair_12 The CBS do 98.2 3.5E-06 7.6E-11 64.9 5.8 81 215-303 2-87 (112)
90 cd04620 CBS_pair_7 The CBS dom 98.2 3.4E-06 7.3E-11 65.4 5.6 81 215-303 2-89 (115)
91 cd04603 CBS_pair_KefB_assoc Th 98.1 3.3E-06 7.2E-11 65.4 4.7 55 204-262 56-110 (111)
92 COG2239 MgtE Mg/Co/Ni transpor 98.1 1.3E-05 2.8E-10 77.4 9.2 106 187-303 115-225 (451)
93 cd04801 CBS_pair_M50_like This 98.1 4.9E-06 1.1E-10 64.5 5.0 58 203-262 56-113 (114)
94 cd04597 CBS_pair_DRTGG_assoc2 98.1 5.3E-06 1.2E-10 65.0 5.1 55 204-262 58-112 (113)
95 COG0517 FOG: CBS domain [Gener 98.1 1.3E-05 2.7E-10 62.1 6.7 86 207-302 2-90 (117)
96 cd04617 CBS_pair_4 The CBS dom 98.1 7E-06 1.5E-10 64.2 5.3 60 202-262 56-117 (118)
97 cd04604 CBS_pair_KpsF_GutQ_ass 98.0 8.3E-06 1.8E-10 62.9 5.3 59 200-262 55-113 (114)
98 cd04619 CBS_pair_6 The CBS dom 98.0 7.4E-06 1.6E-10 63.7 4.7 57 202-262 57-113 (114)
99 PRK07107 inosine 5-monophospha 97.9 1.3E-05 2.9E-10 78.7 5.0 61 201-263 158-218 (502)
100 cd04585 CBS_pair_ACT_assoc2 Th 97.9 1.6E-05 3.4E-10 61.9 4.4 58 201-262 64-121 (122)
101 TIGR00400 mgtE Mg2+ transporte 97.9 8.5E-06 1.8E-10 79.3 3.4 89 202-301 193-281 (449)
102 cd04607 CBS_pair_NTP_transfera 97.9 2.2E-05 4.7E-10 60.7 4.8 56 203-262 57-112 (113)
103 cd04640 CBS_pair_27 The CBS do 97.9 1.3E-05 2.9E-10 63.5 3.6 60 202-262 62-125 (126)
104 cd04618 CBS_pair_5 The CBS dom 97.9 2.6E-05 5.6E-10 59.4 5.0 46 216-262 52-97 (98)
105 cd04623 CBS_pair_10 The CBS do 97.8 2.9E-05 6.4E-10 59.5 4.9 55 203-262 58-112 (113)
106 cd04610 CBS_pair_ParBc_assoc T 97.8 2.9E-05 6.4E-10 59.1 4.7 56 203-262 51-106 (107)
107 cd04600 CBS_pair_HPP_assoc Thi 97.8 3.2E-05 7E-10 60.6 4.6 58 201-262 66-123 (124)
108 cd04630 CBS_pair_17 The CBS do 97.8 3.6E-05 7.8E-10 59.6 4.7 56 202-262 58-113 (114)
109 cd04582 CBS_pair_ABC_OpuCA_ass 97.8 4.4E-05 9.6E-10 58.1 5.1 54 205-262 52-105 (106)
110 cd04596 CBS_pair_DRTGG_assoc T 97.8 3.5E-05 7.5E-10 59.1 4.5 57 202-262 51-107 (108)
111 cd04620 CBS_pair_7 The CBS dom 97.7 4.5E-05 9.8E-10 59.0 5.0 56 203-262 57-114 (115)
112 cd04621 CBS_pair_8 The CBS dom 97.7 4.3E-05 9.2E-10 61.7 4.7 56 202-262 79-134 (135)
113 cd04625 CBS_pair_12 The CBS do 97.7 4.2E-05 9.2E-10 58.8 4.5 55 203-262 57-111 (112)
114 cd04622 CBS_pair_9 The CBS dom 97.7 4.9E-05 1.1E-09 58.4 4.8 56 203-262 57-112 (113)
115 cd04627 CBS_pair_14 The CBS do 97.7 5.2E-05 1.1E-09 59.6 4.9 52 206-261 70-121 (123)
116 PRK14869 putative manganese-de 97.7 7E-05 1.5E-09 74.7 7.0 59 202-263 244-302 (546)
117 cd04615 CBS_pair_2 The CBS dom 97.7 5.1E-05 1.1E-09 58.4 4.6 57 202-262 56-112 (113)
118 cd04601 CBS_pair_IMPDH This cd 97.7 6.5E-05 1.4E-09 57.4 5.0 56 203-262 53-109 (110)
119 cd04587 CBS_pair_CAP-ED_DUF294 97.7 4.9E-05 1.1E-09 58.5 4.3 55 204-262 58-112 (113)
120 cd04613 CBS_pair_SpoIVFB_EriC_ 97.7 4.9E-05 1.1E-09 58.4 4.3 57 203-262 57-113 (114)
121 cd04631 CBS_pair_18 The CBS do 97.7 5E-05 1.1E-09 59.6 4.4 57 202-262 68-124 (125)
122 cd04636 CBS_pair_23 The CBS do 97.7 5.6E-05 1.2E-09 60.3 4.6 56 202-262 76-131 (132)
123 PRK10892 D-arabinose 5-phospha 97.7 4.5E-05 9.8E-10 71.0 4.6 58 201-263 266-323 (326)
124 cd04633 CBS_pair_20 The CBS do 97.7 4.5E-05 9.7E-10 59.5 4.0 57 201-262 64-120 (121)
125 PLN02274 inosine-5'-monophosph 97.7 4.3E-05 9.4E-10 75.2 4.7 60 202-263 161-220 (505)
126 COG2905 Predicted signal-trans 97.7 4.3E-05 9.3E-10 74.2 4.4 94 201-303 146-243 (610)
127 cd04584 CBS_pair_ACT_assoc Thi 97.7 5.8E-05 1.3E-09 58.8 4.4 57 201-262 64-120 (121)
128 cd04606 CBS_pair_Mg_transporte 97.7 6.6E-05 1.4E-09 57.6 4.6 57 203-263 52-108 (109)
129 cd04593 CBS_pair_EriC_assoc_ba 97.6 7.6E-05 1.7E-09 57.8 4.9 56 204-262 58-114 (115)
130 cd04803 CBS_pair_15 The CBS do 97.6 7.3E-05 1.6E-09 58.4 4.7 58 201-262 64-121 (122)
131 cd04602 CBS_pair_IMPDH_2 This 97.6 6.9E-05 1.5E-09 58.1 4.5 57 204-262 57-113 (114)
132 cd04586 CBS_pair_BON_assoc Thi 97.6 5.6E-05 1.2E-09 60.5 3.9 57 201-262 78-134 (135)
133 PTZ00314 inosine-5'-monophosph 97.6 7.1E-05 1.5E-09 73.6 5.2 60 202-263 157-216 (495)
134 cd04626 CBS_pair_13 The CBS do 97.6 8.7E-05 1.9E-09 57.0 4.7 55 203-262 56-110 (111)
135 COG0517 FOG: CBS domain [Gener 97.6 0.00015 3.2E-09 56.0 6.0 53 205-261 63-117 (117)
136 cd04583 CBS_pair_ABC_OpuCA_ass 97.6 9.2E-05 2E-09 56.4 4.7 55 204-262 54-108 (109)
137 cd04589 CBS_pair_CAP-ED_DUF294 97.6 8.9E-05 1.9E-09 56.9 4.6 56 202-262 55-110 (111)
138 PRK11543 gutQ D-arabinose 5-ph 97.6 0.0001 2.2E-09 68.5 5.8 57 203-263 262-318 (321)
139 COG2524 Predicted transcriptio 97.6 5.5E-05 1.2E-09 66.8 3.7 58 203-264 233-290 (294)
140 cd04611 CBS_pair_PAS_GGDEF_DUF 97.6 0.0001 2.3E-09 56.3 4.8 57 202-262 54-110 (111)
141 cd04635 CBS_pair_22 The CBS do 97.6 8.9E-05 1.9E-09 57.9 4.4 57 202-262 65-121 (122)
142 cd04802 CBS_pair_3 The CBS dom 97.6 0.00011 2.3E-09 56.5 4.8 56 202-262 56-111 (112)
143 cd04639 CBS_pair_26 The CBS do 97.6 8.7E-05 1.9E-09 56.9 4.2 55 204-262 56-110 (111)
144 cd04641 CBS_pair_28 The CBS do 97.6 0.00012 2.5E-09 57.3 5.0 52 207-262 68-119 (120)
145 cd04599 CBS_pair_GGDEF_assoc2 97.6 0.0001 2.2E-09 55.8 4.5 55 203-262 50-104 (105)
146 cd04594 CBS_pair_EriC_assoc_ar 97.6 0.00012 2.5E-09 55.9 4.8 54 204-262 50-103 (104)
147 cd04629 CBS_pair_16 The CBS do 97.6 8.5E-05 1.8E-09 57.2 4.0 55 203-262 59-113 (114)
148 cd04643 CBS_pair_30 The CBS do 97.6 7.9E-05 1.7E-09 57.6 3.7 55 202-262 61-115 (116)
149 cd04612 CBS_pair_SpoIVFB_EriC_ 97.5 0.00016 3.4E-09 55.3 5.0 55 204-262 56-110 (111)
150 cd04632 CBS_pair_19 The CBS do 97.5 0.00012 2.5E-09 57.9 4.3 58 202-262 69-127 (128)
151 cd04595 CBS_pair_DHH_polyA_Pol 97.5 0.00016 3.4E-09 55.5 4.6 56 202-262 54-109 (110)
152 cd04637 CBS_pair_24 The CBS do 97.5 0.00012 2.6E-09 57.2 4.0 55 204-262 67-121 (122)
153 cd04800 CBS_pair_CAP-ED_DUF294 97.5 0.00015 3.2E-09 55.6 4.4 55 203-262 56-110 (111)
154 cd04614 CBS_pair_1 The CBS dom 97.5 0.00018 3.9E-09 54.3 4.7 45 216-262 51-95 (96)
155 smart00116 CBS Domain in cysta 97.5 0.00015 3.3E-09 46.1 3.6 45 216-262 2-46 (49)
156 PRK01862 putative voltage-gate 97.4 0.00016 3.4E-09 72.7 4.7 59 203-264 511-570 (574)
157 cd04588 CBS_pair_CAP-ED_DUF294 97.4 0.00024 5.1E-09 54.3 4.6 55 204-262 55-109 (110)
158 cd04608 CBS_pair_PALP_assoc Th 97.4 6.4E-05 1.4E-09 59.7 1.4 58 202-263 57-123 (124)
159 PRK07807 inosine 5-monophospha 97.4 0.00017 3.8E-09 70.5 4.4 57 204-264 148-204 (479)
160 TIGR01303 IMP_DH_rel_1 IMP deh 97.4 0.00018 3.8E-09 70.4 4.4 56 204-263 146-201 (475)
161 cd04624 CBS_pair_11 The CBS do 97.4 0.0003 6.5E-09 54.0 4.7 56 203-262 56-111 (112)
162 COG3448 CBS-domain-containing 97.3 0.00026 5.7E-09 63.8 4.7 62 199-264 310-371 (382)
163 cd04605 CBS_pair_MET2_assoc Th 97.3 0.00035 7.5E-09 53.4 4.9 54 205-262 56-109 (110)
164 cd04642 CBS_pair_29 The CBS do 97.3 0.00034 7.4E-09 55.2 4.8 51 208-262 75-125 (126)
165 cd04590 CBS_pair_CorC_HlyC_ass 97.3 0.00028 6E-09 54.1 4.1 53 205-262 58-110 (111)
166 PRK14869 putative manganese-de 97.3 0.0002 4.4E-09 71.4 4.0 57 203-263 67-123 (546)
167 cd04591 CBS_pair_EriC_assoc_eu 97.3 0.00041 8.9E-09 53.2 4.7 49 209-262 56-104 (105)
168 cd04634 CBS_pair_21 The CBS do 97.3 0.00035 7.5E-09 56.7 4.4 56 202-262 87-142 (143)
169 COG2905 Predicted signal-trans 97.2 0.00027 5.9E-09 68.8 3.2 70 191-265 198-270 (610)
170 cd04598 CBS_pair_GGDEF_assoc T 97.1 0.0005 1.1E-08 53.3 4.0 57 202-262 59-118 (119)
171 TIGR00393 kpsF KpsF/GutQ famil 97.1 0.00052 1.1E-08 61.9 4.4 51 202-256 218-268 (268)
172 TIGR01302 IMP_dehydrog inosine 97.1 0.00058 1.3E-08 66.5 4.8 60 202-264 141-200 (450)
173 cd04609 CBS_pair_PALP_assoc2 T 97.0 0.0008 1.7E-08 51.1 3.6 54 203-262 56-109 (110)
174 cd04638 CBS_pair_25 The CBS do 97.0 0.0011 2.4E-08 50.3 4.4 54 204-262 52-105 (106)
175 PRK15094 magnesium/cobalt effl 97.0 0.0012 2.5E-08 60.7 5.2 86 205-301 134-228 (292)
176 KOG2550 IMP dehydrogenase/GMP 96.9 0.0015 3.2E-08 61.4 5.3 125 164-302 72-199 (503)
177 cd02205 CBS_pair The CBS domai 96.9 0.002 4.4E-08 48.4 5.2 53 206-262 60-112 (113)
178 PRK05567 inosine 5'-monophosph 96.8 0.0017 3.8E-08 63.9 4.9 58 203-263 146-203 (486)
179 TIGR03520 GldE gliding motilit 96.7 0.0032 7E-08 60.6 6.6 89 203-301 254-349 (408)
180 KOG0474 Cl- channel CLC-7 and 96.7 0.00064 1.4E-08 66.9 1.6 94 201-302 579-718 (762)
181 COG2239 MgtE Mg/Co/Ni transpor 96.1 0.0045 9.8E-08 60.0 3.3 61 200-264 192-252 (451)
182 PRK10070 glycine betaine trans 96.0 0.019 4.1E-07 55.2 7.2 91 204-302 274-365 (400)
183 COG4109 Predicted transcriptio 95.9 0.0088 1.9E-07 55.4 3.9 58 202-263 247-304 (432)
184 cd04592 CBS_pair_EriC_assoc_eu 95.6 0.0097 2.1E-07 47.9 2.9 35 214-249 86-120 (133)
185 COG3620 Predicted transcriptio 95.5 0.012 2.7E-07 48.6 3.1 60 199-265 125-184 (187)
186 KOG2550 IMP dehydrogenase/GMP 95.5 0.011 2.5E-07 55.6 3.2 59 201-263 168-226 (503)
187 TIGR01186 proV glycine betaine 95.3 0.018 3.9E-07 54.6 3.8 57 204-265 302-358 (363)
188 TIGR01137 cysta_beta cystathio 94.3 0.037 8.1E-07 53.8 3.3 54 203-263 399-452 (454)
189 KOG1764 5'-AMP-activated prote 94.1 0.094 2E-06 50.0 5.6 81 215-302 238-330 (381)
190 TIGR01186 proV glycine betaine 94.1 0.2 4.3E-06 47.6 7.7 78 218-303 254-331 (363)
191 KOG0475 Cl- channel CLC-3 and 94.0 0.11 2.4E-06 51.6 5.9 91 206-302 545-667 (696)
192 KOG1764 5'-AMP-activated prote 93.9 0.066 1.4E-06 51.1 4.2 52 211-264 307-358 (381)
193 PRK10070 glycine betaine trans 93.8 0.049 1.1E-06 52.3 3.1 58 203-265 336-393 (400)
194 PRK11573 hypothetical protein; 93.5 0.2 4.4E-06 48.3 6.7 78 215-300 263-349 (413)
195 COG4536 CorB Putative Mg2+ and 87.9 1.3 2.9E-05 41.7 6.1 58 204-263 265-322 (423)
196 COG1253 TlyC Hemolysins and re 86.6 2.2 4.8E-05 41.4 7.1 99 191-300 258-366 (429)
197 KOG0474 Cl- channel CLC-7 and 86.1 0.8 1.7E-05 45.8 3.8 54 206-263 692-745 (762)
198 PF00571 CBS: CBS domain CBS d 85.5 0.52 1.1E-05 31.3 1.6 28 271-303 1-28 (57)
199 TIGR03415 ABC_choXWV_ATP choli 82.8 1 2.2E-05 43.0 2.9 54 204-264 326-379 (382)
200 KOG0476 Cl- channel CLC-2 and 73.0 1.7 3.6E-05 44.6 1.1 58 203-263 587-645 (931)
201 COG1125 OpuBA ABC-type proline 71.9 4.2 9.1E-05 36.8 3.3 60 201-262 246-307 (309)
202 COG2216 KdpB High-affinity K+ 65.2 7.3 0.00016 38.5 3.7 36 225-263 415-450 (681)
203 COG4175 ProV ABC-type proline/ 60.4 7.2 0.00016 36.4 2.6 48 215-265 336-383 (386)
204 PF14044 NETI: NETI protein 60.0 9.7 0.00021 25.9 2.5 28 218-246 3-35 (57)
205 COG4535 CorC Putative Mg2+ and 59.8 22 0.00047 31.8 5.3 86 204-300 133-227 (293)
206 KOG0475 Cl- channel CLC-3 and 58.6 11 0.00024 38.0 3.6 54 205-263 640-693 (696)
207 TIGR03415 ABC_choXWV_ATP choli 56.9 16 0.00035 34.9 4.4 89 194-302 264-353 (382)
208 COG4175 ProV ABC-type proline/ 55.7 15 0.00032 34.4 3.7 69 191-262 261-330 (386)
209 PF02419 PsbL: PsbL protein; 54.7 24 0.00051 21.7 3.3 25 5-29 10-35 (37)
210 CHL00038 psbL photosystem II p 53.4 22 0.00049 21.8 3.0 25 5-29 11-36 (38)
211 PF11131 PhrC_PhrF: Rap-phr ex 46.9 18 0.00039 22.1 1.9 19 18-36 5-23 (37)
212 PRK00753 psbL photosystem II r 46.8 28 0.00061 21.5 2.8 25 5-29 12-37 (39)
213 PF03563 Bunya_G2: Bunyavirus 45.2 79 0.0017 28.6 6.5 39 105-157 196-234 (285)
214 cd04597 CBS_pair_DRTGG_assoc2 36.2 26 0.00057 26.6 2.0 29 269-302 58-86 (113)
215 PF15086 UPF0542: Uncharacteri 35.1 1.7E+02 0.0037 21.0 6.2 10 22-31 33-42 (74)
216 KOG0476 Cl- channel CLC-2 and 32.9 39 0.00084 35.1 2.9 65 191-264 793-857 (931)
217 PF14827 Cache_3: Sensory doma 31.6 49 0.0011 25.5 2.9 18 240-258 93-110 (116)
218 COG3763 Uncharacterized protei 29.8 1.2E+02 0.0027 21.5 4.2 37 10-51 1-37 (71)
219 PF07172 GRP: Glycine rich pro 29.1 74 0.0016 24.1 3.3 10 26-35 15-24 (95)
220 PF14147 Spore_YhaL: Sporulati 27.2 60 0.0013 21.6 2.2 18 11-30 2-19 (52)
221 PF10853 DUF2650: Protein of u 25.6 58 0.0013 20.3 1.8 19 2-20 7-34 (38)
222 PRK03972 ribosomal biogenesis 24.3 93 0.002 27.1 3.5 35 222-257 35-69 (208)
223 PHA00728 hypothetical protein 24.1 59 0.0013 25.7 2.0 54 188-246 35-88 (151)
224 PF15284 PAGK: Phage-encoded v 23.4 1.4E+02 0.0031 20.6 3.5 25 15-39 6-30 (61)
225 KOG3235 Subunit of the major N 22.9 68 0.0015 26.9 2.2 58 201-260 4-62 (193)
226 PF14316 DUF4381: Domain of un 21.5 3.8E+02 0.0082 21.5 6.5 13 11-23 22-34 (146)
227 PF05399 EVI2A: Ectropic viral 20.7 2.3E+02 0.0049 24.8 5.0 29 8-36 126-154 (227)
No 1
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-56 Score=403.13 Aligned_cols=277 Identities=25% Similarity=0.381 Sum_probs=243.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHHHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHHH
Q 022005 12 FIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFL 91 (304)
Q Consensus 12 ~~~~~~~~~~ll~lsa~fs~~E~Al~s~~~~rl~~l~~~g~~~~~~~a~~~~~l~~~~~~~l~t~lign~~~~~~~~~~~ 91 (304)
.|..++++++|+++||||||+|||++++||.|++.++++|+++ |+++.+++++|++++++++||||++|+..+.+.
T Consensus 2 ~~~l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~~~----Akrv~kLL~k~drlig~iLIGNNLvNilasala 77 (423)
T COG4536 2 TWILIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGNRG----AKRVEKLLEKPDRLIGTILIGNNLVNILASALA 77 (423)
T ss_pred cchHHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccchh----hHHHHHHhcCchheeeeeeecccHHHHHHHHHH
Confidence 4788889999999999999999999999999999999999964 789999999999999999999999998655433
Q ss_pred h----HHHH---HHHHHHHHhHHHHhhhhhhhHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH---HhcCCC
Q 022005 92 D----GLVS---AWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDV---LLGHGR 161 (304)
Q Consensus 92 ~----~~~~---~~~a~l~~~~l~lvfgEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~P~~~~~~~~~~~---l~~~~~ 161 (304)
+ .++| ..+|+.++|+++++|+|++||++|+.|||+++..+++++.++.++|+|++|+++++++. +||.+.
T Consensus 78 T~~~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~ 157 (423)
T COG4536 78 TILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINL 157 (423)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence 2 2333 23577788999999999999999999999999999999999999999999999988765 466542
Q ss_pred ----cccccHHHHHHHHHhhcccccCCCCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcC
Q 022005 162 ----VALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKG 237 (304)
Q Consensus 162 ----~~~~s~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~ 237 (304)
+...|.||+|.+++. ++++|...+++++|+-+++++++++|+|||+||.++..++.|++++ ++++.+.++.
T Consensus 158 ~~~~~~~~s~EElR~~v~~----~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~ 232 (423)
T COG4536 158 DQAVSQLSSKEELRTAVNE----SGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSP 232 (423)
T ss_pred ccccccccCHHHHHHHHHH----hhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhCC
Confidence 346799999999994 4445777788999999999999999999999999999999999998 9999999999
Q ss_pred CceeeeeeCCCCcEEEEEEechhcccCCccc-c---CcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005 238 HSRVPVYYEEPTNIIGLILVKNLLTIHPEDE-V---PVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 238 ~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~-~---~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
|+|+|||+++.|+++|++|.||+++...+.+ . ++..+ .++|+|||++++ +.+.|..||++
T Consensus 233 HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~-a~epyFVPe~Tp-----l~~QL~~F~~~ 296 (423)
T COG4536 233 HTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRA-ADEPYFVPEGTP-----LSDQLVAFQRN 296 (423)
T ss_pred CCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHH-hcCCeecCCCCc-----HHHHHHHHHHh
Confidence 9999999999999999999999998764432 2 33333 589999999999 99999999875
No 2
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=100.00 E-value=1.7e-54 Score=412.78 Aligned_cols=267 Identities=25% Similarity=0.414 Sum_probs=231.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHHHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHHHh----HHH
Q 022005 20 VFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLD----GLV 95 (304)
Q Consensus 20 ~~ll~lsa~fs~~E~Al~s~~~~rl~~l~~~g~~~~~~~a~~~~~l~~~~~~~l~t~lign~~~~~~~~~~~~----~~~ 95 (304)
++|+++||||||+|+|++|+|+.|+++++++|++ +|+++.++++||+++++|+++||+++|.+.+.++. .++
T Consensus 2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~~----~a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~ 77 (408)
T TIGR03520 2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSK----KEQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLF 77 (408)
T ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999999999999999999885 46789999999999999999999999976554332 222
Q ss_pred H--------HHHHHHHHhHHHHhhhhhhhHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCccc
Q 022005 96 S--------AWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVL---LGHGRVAL 164 (304)
Q Consensus 96 ~--------~~~a~l~~~~l~lvfgEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~P~~~~~~~~~~~l---~~~~~~~~ 164 (304)
+ ...+++++|+++++|||++||++|.+||++++.++++|+++++++++|++|+++++++.+ +|.+. ..
T Consensus 78 ~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~-~~ 156 (408)
T TIGR03520 78 GSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQK-SN 156 (408)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CC
Confidence 2 112345667889999999999999999999999999999999999999999999887654 45543 35
Q ss_pred ccHHHHHHHHHhhcccccCCCCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeee
Q 022005 165 FRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVY 244 (304)
Q Consensus 165 ~s~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~ 244 (304)
+|+|||+.+++. +.++| ++++|++|++|+++|++++|+|+||||+++++++.+++++ ++.+.+.++||||+|||
T Consensus 157 ~t~eEl~~lv~~----~~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~ 230 (408)
T TIGR03520 157 ISVDQLSQALEL----TDEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVY 230 (408)
T ss_pred CCHHHHHHHHHh----HhhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEE
Confidence 899999999984 33346 6899999999999999999999999999999999999998 99999999999999999
Q ss_pred eCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005 245 YEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 245 ~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
+++.|+++|++|.||++....++..++.++ +|++.+||++++ +.+++++||++
T Consensus 231 ~~~~d~ivGiv~~kDll~~~~~~~~~l~~~-~~~~~~Vpe~~~-----l~~ll~~m~~~ 283 (408)
T TIGR03520 231 KETIDNITGVLYIKDLLPHLNKKNFDWQSL-LREPYFVPENKK-----LDDLLRDFQEK 283 (408)
T ss_pred cCCCCceEEEEEHHHHHhHhccCCCCHHHH-cCCCeEeCCCCc-----HHHHHHHHHhc
Confidence 988899999999999987544334567887 689999999999 99999999874
No 3
>PRK11573 hypothetical protein; Provisional
Probab=100.00 E-value=7.3e-54 Score=408.59 Aligned_cols=264 Identities=20% Similarity=0.317 Sum_probs=228.0
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHHHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHHHh----HHH---
Q 022005 23 VMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLD----GLV--- 95 (304)
Q Consensus 23 l~lsa~fs~~E~Al~s~~~~rl~~l~~~g~~~~~~~a~~~~~l~~~~~~~l~t~lign~~~~~~~~~~~~----~~~--- 95 (304)
+++||||||+|+|++|+|+.|+++++++|++ +|++++++++||+++++|+++||+++|.+.+.+.+ .++
T Consensus 2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~~----~a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~ 77 (413)
T PRK11573 2 VVISAYFSGSETGMMTLNRYRLRHMAKQGNR----SAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDA 77 (413)
T ss_pred eehhhHHHHHHHHHHHcCHHHHHHHHHcCCh----hHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5689999999999999999999999999986 36789999999999999999999999876554332 222
Q ss_pred HHHHHHHHHhHHHHhhhhhhhHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH---HhcCCC----cccccHH
Q 022005 96 SAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDV---LLGHGR----VALFRRA 168 (304)
Q Consensus 96 ~~~~a~l~~~~l~lvfgEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~P~~~~~~~~~~~---l~~~~~----~~~~s~e 168 (304)
+.+.+++++|+++++|||++||++|.+||+++++++++|+++++++++|++|+++++++. ++|.+. ...+|+|
T Consensus 78 ~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~e 157 (413)
T PRK11573 78 GVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKE 157 (413)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHH
Confidence 223456677889999999999999999999999999999999999999999999887765 456542 2468999
Q ss_pred HHHHHHHhhcccccCCCCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCC
Q 022005 169 ELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP 248 (304)
Q Consensus 169 El~~lv~~~~~e~~~~g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~ 248 (304)
||+.+++.+ . +.++++|++|++|+++|++++|+|+||||+++++++.+++++ ++.+.+.++||||+|||+++.
T Consensus 158 El~~lv~~~----~--~~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~ 230 (413)
T PRK11573 158 ELRTIVHES----R--SQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSL 230 (413)
T ss_pred HHHHHHHHH----h--hhcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCC
Confidence 999999842 2 259999999999999999999999999999999999999998 999999999999999999888
Q ss_pred CcEEEEEEechhcccCCc-cc---cCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005 249 TNIIGLILVKNLLTIHPE-DE---VPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 249 ~~ivGiv~~kDll~~~~~-~~---~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
|+++|++|.||++....+ +. .++.++ +||+.+||++++ +.++|++||++
T Consensus 231 D~IiGiv~~kDll~~~~~~~~~~~~~l~~~-~r~~~~Vpe~~~-----l~~lL~~~~~~ 283 (413)
T PRK11573 231 DDAISMLRVREAYRLMTEKKEFTKENMLRA-ADEIYFVPEGTP-----LSTQLVKFQRN 283 (413)
T ss_pred CceEEEEEHHHHHHHhhccCcCCHHHHHhh-ccCCeEeCCCCc-----HHHHHHHHHhc
Confidence 999999999999864322 21 234465 689999999999 99999999875
No 4
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=100.00 E-value=4e-49 Score=378.72 Aligned_cols=277 Identities=27% Similarity=0.450 Sum_probs=235.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHHHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHH
Q 022005 11 GFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIF 90 (304)
Q Consensus 11 ~~~~~~~~~~~ll~lsa~fs~~E~Al~s~~~~rl~~l~~~g~~~~~~~a~~~~~l~~~~~~~l~t~lign~~~~~~~~~~ 90 (304)
+.+..++++++|+++|||||++|+|+++++|.|+++++++|++ .|..+.++.++++++++++++|+++++...+.+
T Consensus 2 ~~~~~~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~~----~a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~ 77 (429)
T COG1253 2 SLILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNK----RAKAALKLIERLNRYLSTVQLGITLVSLLLGAV 77 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccCH----hHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHH
Confidence 3456678888899999999999999999999999999999875 467889999999999999999999988755443
Q ss_pred HhHHH----HHHH---------HHHHHhHHHHhhhhhhhHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022005 91 LDGLV----SAWG---------AILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLL 157 (304)
Q Consensus 91 ~~~~~----~~~~---------a~l~~~~l~lvfgEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~P~~~~~~~~~~~l~ 157 (304)
+...+ ..|. .+++.|+++++|||++||++|.+||++++++.++++++++++++|++|+++++++.++
T Consensus 78 ~~~~~~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il 157 (429)
T COG1253 78 GEPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAIL 157 (429)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32211 1111 1456788999999999999999999999999999999999999999999999887754
Q ss_pred ---cCC----CcccccHHHHHHHHHhhcccccCCCCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHH
Q 022005 158 ---GHG----RVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELM 230 (304)
Q Consensus 158 ---~~~----~~~~~s~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~ 230 (304)
|.+ .....+.+|++ +++ ++.++|.++++|++|++|+|+|++++|+|+||||+++++++.+.+.+ ++.
T Consensus 158 ~l~~~~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~ 231 (429)
T COG1253 158 RLFGVEPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELI 231 (429)
T ss_pred HHcCCCCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHH
Confidence 433 22346677887 776 45677999999999999999999999999999999999999999998 999
Q ss_pred HHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccc--cCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005 231 NLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE--VPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 231 ~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~--~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
+.+.+++|||+|||+++.|+++|++|.||++.....+. ...... .+|+.+||++++ +.++|++||++
T Consensus 232 ~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~-~~~~~~Vpet~~-----~~~lL~~~r~~ 300 (429)
T COG1253 232 ELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVL-VRPPLFVPETLS-----LSDLLEEFREE 300 (429)
T ss_pred HHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhc-ccCCeEecCCCc-----HHHHHHHHHHh
Confidence 99999999999999988899999999999998654432 333333 569999999999 99999999864
No 5
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=99.97 E-value=2.8e-29 Score=214.59 Aligned_cols=169 Identities=28% Similarity=0.467 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHHHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHHHh--
Q 022005 15 HIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLD-- 92 (304)
Q Consensus 15 ~~~~~~~ll~lsa~fs~~E~Al~s~~~~rl~~l~~~g~~~~~~~a~~~~~l~~~~~~~l~t~lign~~~~~~~~~~~~-- 92 (304)
.++++++++++||+||++|+|++++|+.++++++++|++ +++++.++++||+++++|+++||++++.+.+.+..
T Consensus 2 ~l~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~~----~a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~ 77 (183)
T PF01595_consen 2 LLLLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGDK----RARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVL 77 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677889999999999999999999999999999885 46789999999999999999999999876654332
Q ss_pred --HHH----HHHHHHHHHhHHHHhhhhhhhHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH---hcCCC--
Q 022005 93 --GLV----SAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVL---LGHGR-- 161 (304)
Q Consensus 93 --~~~----~~~~a~l~~~~l~lvfgEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~P~~~~~~~~~~~l---~~~~~-- 161 (304)
..+ +.+.+.++.++++++|||++||.+|.+||++++.+.++++++++++++|++++++++.+.+ +|.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~ 157 (183)
T PF01595_consen 78 ASNLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEE 157 (183)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 222 2344566678889999999999999999999999999999999999999999999887765 44442
Q ss_pred cccccHHHHHHHHHhhcccccCCCCCChhH
Q 022005 162 VALFRRAELKTLVNLHGNEAGKGGELTHDE 191 (304)
Q Consensus 162 ~~~~s~eEl~~lv~~~~~e~~~~g~l~~~e 191 (304)
++.+|+|||+.+++ +++++|.++++|
T Consensus 158 ~~~~s~eel~~lv~----~~~e~G~i~~~E 183 (183)
T PF01595_consen 158 DPAVSEEELRSLVE----EGEEEGVIEEEE 183 (183)
T ss_pred cCCCCHHHHHHHHH----hHHHCCCCCCCC
Confidence 45789999999999 456779999886
No 6
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=99.95 E-value=2.8e-29 Score=243.16 Aligned_cols=292 Identities=51% Similarity=0.802 Sum_probs=256.8
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHH-HHHHHHHHHHchhHHHHHHHHHHHH
Q 022005 4 EYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRK-HAAKILPVVRNQHLLLCTLLICNAA 82 (304)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ll~lsa~fs~~E~Al~s~~~~rl~~l~~~g~~~~~~-~a~~~~~l~~~~~~~l~t~lign~~ 82 (304)
...||+..++....++.+++++++++||.+.++++.+-..++.+.+.|+...++ .++++....++.+.+++|.+++|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~~ 83 (498)
T KOG2118|consen 4 AIPKTGSFMPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNSI 83 (498)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhhh
Confidence 456888887777777777999999999999999999999999999999876654 5667888888899999999999999
Q ss_pred HHHH-HHHHHhHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 022005 83 AMEA-LPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGR 161 (304)
Q Consensus 83 ~~~~-~~~~~~~~~~~~~a~l~~~~l~lvfgEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~P~~~~~~~~~~~l~~~~~ 161 (304)
++.+ +..++....+.|.++.+++..++.|||++|+.++.+|.-.+...+.++.+++.++++|+.|+++++ ...+|...
T Consensus 84 ~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~~ 162 (498)
T KOG2118|consen 84 ATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLNL 162 (498)
T ss_pred ccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhcccc
Confidence 9887 766666666678898899999999999999999999999999999999999999999999999988 66677766
Q ss_pred cccccHHHHHHHHHhhcccccCCCCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCcee
Q 022005 162 VALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRV 241 (304)
Q Consensus 162 ~~~~s~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~ 241 (304)
+....+.++..++..++.|+++ |.+..+|..++.+++++.++.++|+|||-.+++.++.+..++++....+.++||||+
T Consensus 163 ~~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sri 241 (498)
T KOG2118|consen 163 GEFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRI 241 (498)
T ss_pred ccchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCccee
Confidence 5667788999999988777655 899999999999999999999999999999999999999998778888889999999
Q ss_pred eeeeCCCCcEEEEEEechhcccC----CccccCcccccccccceecCCCCCchhHHHHHHHHHhh
Q 022005 242 PVYYEEPTNIIGLILVKNLLTIH----PEDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFST 302 (304)
Q Consensus 242 PV~~~~~~~ivGiv~~kDll~~~----~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~ 302 (304)
|||+++..+.+|.+..+..+... ..+..++.+.+.++...+|++++ ..+.++.||+
T Consensus 242 pv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~-----~~~~l~~~~~ 301 (498)
T KOG2118|consen 242 PVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMP-----LLDLLNEFQK 301 (498)
T ss_pred eeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCccc-----HHHHHHHHhh
Confidence 99998878888887777776654 33456788888899999999999 9999999986
No 7
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.88 E-value=1.7e-22 Score=184.85 Aligned_cols=137 Identities=25% Similarity=0.417 Sum_probs=118.4
Q ss_pred HHHHhcCCCcccccHHHHHHHHHhhcccccCCCCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHH
Q 022005 153 LDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNL 232 (304)
Q Consensus 153 ~~~l~~~~~~~~~s~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~ 232 (304)
..+++|.+. .|++||+.+++. +.++|.++++|+++++|+|+|++++|+|+|+||.++++++.+++++ ++.+.
T Consensus 23 ~~~~~~~~~---~t~eEl~~l~~~----~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~ 94 (292)
T PRK15094 23 LSQLFHGEP---KNRDELLALIRD----SEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDV 94 (292)
T ss_pred HHHHcCCCC---CCHHHHHHHHHh----HhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHH
Confidence 344565543 489999999983 4567999999999999999999999999999999999999999998 99999
Q ss_pred HHhcCCceeeeeeCCCCcEEEEEEechhcccCCc--cccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005 233 ILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 233 ~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~--~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
+.+++|+|+|||+++.|+++|+|+.||++..... ...++.++ ++++.++|++++ +.++++.|+++
T Consensus 95 i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l-~r~~~~V~e~~~-----l~~~L~~m~~~ 161 (292)
T PRK15094 95 IIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKV-LRQAVVVPESKR-----VDRMLKEFRSQ 161 (292)
T ss_pred HHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHH-cCCCcCcCCCCc-----HHHHHHHHHhc
Confidence 9999999999998766899999999999864321 22357887 588889999999 99999999864
No 8
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.86 E-value=3.3e-22 Score=171.50 Aligned_cols=141 Identities=25% Similarity=0.415 Sum_probs=123.9
Q ss_pred HHHHHHHHhcCCCcccccHHHHHHHHHhhcccccCCCCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHH
Q 022005 149 ISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKE 228 (304)
Q Consensus 149 ~~~~~~~l~~~~~~~~~s~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e 228 (304)
+.++++.+|..+ +-+++|+..+++ ++++.+.++++-..|++++++..+++|+|||+||+++++++.+++++ +
T Consensus 19 fe~L~~~~f~gE---pknr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~ 90 (293)
T COG4535 19 FERLLSQLFHGE---PKNREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-E 90 (293)
T ss_pred HHHHHHHHhcCC---CcCHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-H
Confidence 455565666443 347899999998 45566889999999999999999999999999999999999999999 9
Q ss_pred HHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc--cccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005 229 LMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 229 ~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~--~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
.+..+.++.||||||+.++.|+|.|+++.||+++.... ....++++ .||+.+|||++. +..+|++|+.+
T Consensus 91 ~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l-LRPav~VPESKr-----vd~lLkeFR~~ 161 (293)
T COG4535 91 CLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL-LRPAVVVPESKR-----VDRLLKEFRSQ 161 (293)
T ss_pred HHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHh-cccceecccchh-----HHHHHHHHHhh
Confidence 99999999999999999999999999999999986533 34688887 899999999999 99999999864
No 9
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.24 E-value=2.3e-11 Score=118.10 Aligned_cols=125 Identities=14% Similarity=0.155 Sum_probs=102.0
Q ss_pred cccHHHHHHHHHhhcccccCC------CCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHh--
Q 022005 164 LFRRAELKTLVNLHGNEAGKG------GELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILE-- 235 (304)
Q Consensus 164 ~~s~eEl~~lv~~~~~e~~~~------g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~-- 235 (304)
.++.||+..+++.. .++ +.++++|++.+++++++++.+|+++|++ +++++++++|++ ++++.+.+
T Consensus 89 ~l~~dd~~~ll~~l----~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~ 161 (449)
T TIGR00400 89 EMNLDDVIDLLEEV----PANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA 161 (449)
T ss_pred cCChhHHHHHHHhC----CHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence 46789999999732 223 4799999999999999999999999985 888999999998 99999975
Q ss_pred -cCCc--eeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005 236 -KGHS--RVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 236 -~~~s--r~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
.+++ .+||.|+ .|+++|+++.+|++...+ +.+++++|.+++.+++++++ +.++++.|+++
T Consensus 162 ~~~~~~~~v~Vvd~-~~~l~GvV~l~dLl~a~~--~~~v~~im~~~~~~v~~~~~-----~~eal~~m~~~ 224 (449)
T TIGR00400 162 KTKEDIYTLYVTNE-SKHLKGVLSIRDLILAKP--EEILSSIMRSSVFSIVGVND-----QEEVARLIQKY 224 (449)
T ss_pred CCccceeEEEEECC-CCeEEEEEEHHHHhcCCC--CCcHHHHhCCCCeeECCCCC-----HHHHHHHHHHc
Confidence 2333 4555554 489999999999986532 44789997667788999999 99999999864
No 10
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.24 E-value=3.6e-11 Score=116.61 Aligned_cols=122 Identities=13% Similarity=0.266 Sum_probs=101.3
Q ss_pred cccHHHHHHHHHhhcccccCCCCCCh-----hHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCC
Q 022005 164 LFRRAELKTLVNLHGNEAGKGGELTH-----DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH 238 (304)
Q Consensus 164 ~~s~eEl~~lv~~~~~e~~~~g~l~~-----~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~ 238 (304)
.+|++|+..++.. .+..|.+++ +|++++++++++++ .|++ +++++++++++. ++++.+.++++
T Consensus 44 tvTe~ema~~ma~----~gg~GvI~~n~~~e~q~~~V~~Vk~~~~-----~~~~--~~vtl~~~~tv~-eal~~m~~~~~ 111 (450)
T TIGR01302 44 TVTESRMAIAMAR----EGGIGVIHRNMSIEEQAEQVKRVKRAEN-----GIIS--DPVTISPETTVA-DVLELMERKGI 111 (450)
T ss_pred ccCHHHHHHHHHh----cCCCceeecCCCHHHHHHHHhhhccccC-----ceec--CceEeCCCCCHH-HHHHHHHHcCC
Confidence 5799999999874 334688984 89999999996655 4654 678899999998 99999999999
Q ss_pred ceeeeeeCCC--CcEEEEEEechhcccCCccccCcccccc-cccceecCCCCCchhHHHHHHHHHhhc
Q 022005 239 SRVPVYYEEP--TNIIGLILVKNLLTIHPEDEVPVKSVTI-RRIPRYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 239 sr~PV~~~~~--~~ivGiv~~kDll~~~~~~~~~v~~~~~-~~~~~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
+++||++++. ++++|+|+.+|++.... ...++.++|. +++.+++++++ +.++++.|+++
T Consensus 112 s~lpVvd~~~~~~~lvGIVt~rDL~~~~~-~~~~V~dvm~~~~~~~V~~~~s-----l~eal~~m~~~ 173 (450)
T TIGR01302 112 SGIPVVEDGDMTGKLVGIITKRDIRFVKD-KGKPVSEVMTREEVITVPEGID-----LEEALKVLHEH 173 (450)
T ss_pred CEEEEEeCCCCCCeEEEEEEHHHHhhhhc-CCCCHHHhhCCCCCEEECCCCc-----HHHHHHHHHHc
Confidence 9999998653 69999999999975432 3457899976 38999999999 99999999764
No 11
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.14 E-value=3.1e-11 Score=105.55 Aligned_cols=99 Identities=15% Similarity=0.310 Sum_probs=88.4
Q ss_pred HhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc--ccCcc
Q 022005 195 IAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--EVPVK 272 (304)
Q Consensus 195 i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~--~~~v~ 272 (304)
+.++....+.+|+++|++ +++++.+|+|+. |+.+.+.+++++..||+|+ |+++|+++..|+..+..++ ..+|+
T Consensus 163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~~kV~ 237 (294)
T COG2524 163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLDAKVS 237 (294)
T ss_pred EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCccccHH
Confidence 455667889999999996 889999999998 9999999999999999985 5999999999998876543 56899
Q ss_pred cccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005 273 SVTIRRIPRYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 273 ~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
++|.+.++++.+++. +.|+++.|.++
T Consensus 238 ~~M~k~vitI~eDe~-----i~dAir~M~~~ 263 (294)
T COG2524 238 DYMRKNVITINEDED-----IYDAIRLMNKN 263 (294)
T ss_pred HHhccCCceEcCchh-----HHHHHHHHHhc
Confidence 999999999999999 99999999764
No 12
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.06 E-value=2.3e-10 Score=104.15 Aligned_cols=101 Identities=21% Similarity=0.375 Sum_probs=87.0
Q ss_pred HHHHHhhhh-----ccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC
Q 022005 191 ETTIIAGAL-----ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP 265 (304)
Q Consensus 191 e~~~i~~~l-----~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~ 265 (304)
-+.||.+++ .-+-.+|.|||+|..+..++..+++++ +..++..++|||||||++.. .+++|+|+.||+....+
T Consensus 170 VAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~~~ 247 (432)
T COG4109 170 VATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDKKP 247 (432)
T ss_pred HHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcCCC
Confidence 455666555 345578999999999999999999998 99999999999999999865 79999999999987654
Q ss_pred ccccCcccccccccceecCCCCCchhHHHHHHHHH
Q 022005 266 EDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLF 300 (304)
Q Consensus 266 ~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m 300 (304)
+.++.++|.|.|.+|.+.++ +..+-+.|
T Consensus 248 --~t~ieKVMtknp~tv~~~ts-----VAsvaq~M 275 (432)
T COG4109 248 --STTIEKVMTKNPITVRAKTS-----VASVAQMM 275 (432)
T ss_pred --CccHHHHhccCCeeecccch-----HHHHHHHH
Confidence 45889999999999999999 88877776
No 13
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.02 E-value=1e-08 Score=91.55 Aligned_cols=125 Identities=15% Similarity=0.246 Sum_probs=97.8
Q ss_pred cccHHHHHHHHHhhcccccCCCCCChhHHHHHhh-------hhccccccccccccccceEEEEeCCCCccHHHHHHHHhc
Q 022005 164 LFRRAELKTLVNLHGNEAGKGGELTHDETTIIAG-------ALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEK 236 (304)
Q Consensus 164 ~~s~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~-------~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~ 236 (304)
.+|.+|+...++- -.|-=+++.++-+-+-+ .-.+.+.+..|||++ ++++++.+++++ ++.+++.++
T Consensus 202 gfs~~Dld~aL~~----~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H 274 (382)
T COG3448 202 GFSSEDLDAALQR----LGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH 274 (382)
T ss_pred CCCHHHHHHHHHh----cCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence 4788999988873 22334466654332211 125678899999996 999999999999 999999999
Q ss_pred CCceeeeeeCCCCcEEEEEEechhcccCCc---------cccCcccccccccceecCCCCCchhHHHHHHHHHh
Q 022005 237 GHSRVPVYYEEPTNIIGLILVKNLLTIHPE---------DEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFS 301 (304)
Q Consensus 237 ~~sr~PV~~~~~~~ivGiv~~kDll~~~~~---------~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~ 301 (304)
++..+||.|++ .+++|+|+.+|+++..+. ...+++.+|..++.++.++++ ..+++-.|.
T Consensus 275 ~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtp-----a~~lvp~la 342 (382)
T COG3448 275 RIKALPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTP-----AVELVPRLA 342 (382)
T ss_pred Ccccccccccc-cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCc-----HHHHHHHhh
Confidence 99999999875 899999999999873221 245789998889999999999 888887764
No 14
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.01 E-value=1.4e-09 Score=106.53 Aligned_cols=121 Identities=17% Similarity=0.237 Sum_probs=100.1
Q ss_pred cccHHHHHHHHHhhcccccCCCCCC-----hhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCC
Q 022005 164 LFRRAELKTLVNLHGNEAGKGGELT-----HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH 238 (304)
Q Consensus 164 ~~s~eEl~~lv~~~~~e~~~~g~l~-----~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~ 238 (304)
.+|++|+...+.. .+..|.+. ++++++++++.. ++|+|.+ ++.++++++++. ++.+.+.++++
T Consensus 51 ~vT~~ela~ava~----~GglG~i~~~~~~e~~~~~I~~vk~-----~~dim~~--~~v~i~~~~tv~-ea~~~m~~~~~ 118 (486)
T PRK05567 51 TVTEARMAIAMAR----EGGIGVIHKNMSIEEQAEEVRKVKR-----SESGVVT--DPVTVTPDTTLA-EALALMARYGI 118 (486)
T ss_pred CcCHHHHHHHHHh----CCCCCEecCCCCHHHHHHHHHHhhh-----hhhcccC--CCeEeCCCCCHH-HHHHHHHHhCC
Confidence 5789999999973 34457777 478889998875 5677864 788899999998 99999999999
Q ss_pred ceeeeeeCCCCcEEEEEEechhcccCCccccCcccccc-cccceecCCCCCchhHHHHHHHHHhhc
Q 022005 239 SRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTI-RRIPRYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 239 sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~-~~~~~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
+++||+++ .++++|+|+.+|+..... ...++.++|. +++.+++++++ +.++++.|+++
T Consensus 119 ~~lpVvd~-~g~lvGiVt~~DL~~~~~-~~~~V~dim~~~~~v~v~~~~s-----l~eal~~m~~~ 177 (486)
T PRK05567 119 SGVPVVDE-NGKLVGIITNRDVRFETD-LSQPVSEVMTKERLVTVPEGTT-----LEEALELLHEH 177 (486)
T ss_pred CEEEEEcc-CCEEEEEEEHHHhhhccc-CCCcHHHHcCCCCCEEECCCCC-----HHHHHHHHHHc
Confidence 99999986 489999999999975432 3457889876 78899999999 99999999763
No 15
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.88 E-value=2.7e-09 Score=99.34 Aligned_cols=95 Identities=16% Similarity=0.099 Sum_probs=79.8
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc----cccCccccccc
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIR 277 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~~~~~ 277 (304)
...+|+|+|++..++.++++++|+. ++.+.+.+++++.+||++++ |+++|+|+.+|+.+.... ...++.++|.+
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~ 277 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP 277 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC
Confidence 5678999998655788999999998 99999999888888888754 899999999998764322 23579999888
Q ss_pred ccceecCCCCCchhHHHHHHHHHhhc
Q 022005 278 RIPRYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 278 ~~~~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
++.+++++++ +.++++.|.++
T Consensus 278 ~~~~v~~~~~-----l~~a~~~m~~~ 298 (326)
T PRK10892 278 GGIRVRPGIL-----AVDALNLMQSR 298 (326)
T ss_pred CCEEECCCCC-----HHHHHHHHHHC
Confidence 9999999999 99999999754
No 16
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.85 E-value=2.8e-09 Score=73.04 Aligned_cols=54 Identities=30% Similarity=0.568 Sum_probs=49.8
Q ss_pred ccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005 206 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (304)
Q Consensus 206 V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (304)
|+|+|++ +++++++++++. ++.+.+.+++++++||++++ ++++|+++.+|+++.
T Consensus 1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~ 54 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKA 54 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhh
Confidence 5799987 888999999998 99999999999999999875 999999999999864
No 17
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.75 E-value=1.8e-08 Score=77.67 Aligned_cols=82 Identities=15% Similarity=0.231 Sum_probs=69.3
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHH
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALF 294 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~ 294 (304)
++.++++++++. ++++.+.+++++++||++++ |+++|+++.+|+++....+..++.++|.+++.+++++++ +.
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~-----l~ 75 (110)
T cd04605 3 PVVTISEDASIK-EAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEP-----ID 75 (110)
T ss_pred CCEEECCCCCHH-HHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCc-----HH
Confidence 556789999998 99999999999999999864 899999999999865433334578887788999999999 99
Q ss_pred HHHHHHhhc
Q 022005 295 RSLSLFSTS 303 (304)
Q Consensus 295 ~~l~~m~~~ 303 (304)
++++.|+++
T Consensus 76 ~~~~~~~~~ 84 (110)
T cd04605 76 VAARKMERH 84 (110)
T ss_pred HHHHHHHHh
Confidence 999999763
No 18
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.75 E-value=2.3e-08 Score=77.21 Aligned_cols=82 Identities=15% Similarity=0.236 Sum_probs=68.5
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc-----cccCcccccccccceecCCCCCc
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-----DEVPVKSVTIRRIPRYLISLGKC 289 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~-----~~~~v~~~~~~~~~~v~~~~~~~ 289 (304)
++.++++++++. ++.+.+.+.+++++||++++ ++++|+++.+|+++.... ...++.++|.+++.+++++.+
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 77 (113)
T cd04623 2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDT-- 77 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCc--
Confidence 456789999998 99999999999999999865 799999999999864321 134688887788899999999
Q ss_pred hhHHHHHHHHHhhc
Q 022005 290 SCALFRSLSLFSTS 303 (304)
Q Consensus 290 ~~~l~~~l~~m~~~ 303 (304)
+.++++.|.++
T Consensus 78 ---~~~~l~~~~~~ 88 (113)
T cd04623 78 ---VDEAMALMTER 88 (113)
T ss_pred ---HHHHHHHHHHc
Confidence 99999999753
No 19
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.71 E-value=3.1e-08 Score=76.60 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=68.8
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc---ccCcccccccccceecCCCCCchh
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED---EVPVKSVTIRRIPRYLISLGKCSC 291 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~---~~~v~~~~~~~~~~v~~~~~~~~~ 291 (304)
++.+++++++++ ++++.+.+++++++||++++ ++++|+++.+|++...... +.++.++|.+++.+++++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~---- 75 (111)
T cd04626 2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDT---- 75 (111)
T ss_pred CceEECCCccHH-HHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCc----
Confidence 456789999998 89999999999999999864 8999999999998653221 34678887788889999999
Q ss_pred HHHHHHHHHhhc
Q 022005 292 ALFRSLSLFSTS 303 (304)
Q Consensus 292 ~l~~~l~~m~~~ 303 (304)
+.++++.|+++
T Consensus 76 -l~~~~~~~~~~ 86 (111)
T cd04626 76 -IDEALDIMREK 86 (111)
T ss_pred -HHHHHHHHHHc
Confidence 99999999764
No 20
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.69 E-value=2.1e-08 Score=100.33 Aligned_cols=94 Identities=13% Similarity=0.168 Sum_probs=78.8
Q ss_pred cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC---Cc-cccCcccccc
Q 022005 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH---PE-DEVPVKSVTI 276 (304)
Q Consensus 201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~---~~-~~~~v~~~~~ 276 (304)
++..+|+|+|++ +..+++++++++ |+.+.+.+++++.+||+|++ ++++|+++.+|+.+.. .+ ++.++.++|.
T Consensus 444 L~~~~V~dim~~--~~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~ 519 (574)
T PRK01862 444 LRTTQMRELIQP--AQTVVPPTASVA-DMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRDTTDKTAADYAH 519 (574)
T ss_pred HhhCcHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence 466789999986 556799999998 99999999999999999864 8999999999998732 11 2356888988
Q ss_pred cccceecCCCCCchhHHHHHHHHHhhc
Q 022005 277 RRIPRYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 277 ~~~~~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
+++..++++++ +.++++.|+++
T Consensus 520 ~~~~~v~~d~~-----L~~al~~m~~~ 541 (574)
T PRK01862 520 TPFPLLTPDMP-----LGDALEHFMAF 541 (574)
T ss_pred CCCeeECCCCC-----HHHHHHHHHhc
Confidence 88889999999 99999999764
No 21
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.68 E-value=1.9e-08 Score=93.43 Aligned_cols=94 Identities=12% Similarity=0.058 Sum_probs=78.3
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC---ccccCccccccccc
Q 022005 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---EDEVPVKSVTIRRI 279 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~---~~~~~v~~~~~~~~ 279 (304)
..+|+|+|.+..++.++++++++. ++.+.+.+++.+.+||++++ ++++|+|+.+|+.+... ....++.++|.+++
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence 358999998643488999999998 99999999999999999865 89999999999875321 12356889988888
Q ss_pred ceecCCCCCchhHHHHHHHHHhhc
Q 022005 280 PRYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 280 ~~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
.+++++.+ +.++++.|.++
T Consensus 274 ~~v~~~~~-----l~~a~~~m~~~ 292 (321)
T PRK11543 274 TTLQAQSR-----AIDAKEILMKR 292 (321)
T ss_pred EEECCCCC-----HHHHHHHHHHc
Confidence 89999999 99999999753
No 22
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.68 E-value=3e-08 Score=96.48 Aligned_cols=94 Identities=16% Similarity=0.257 Sum_probs=79.6
Q ss_pred cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc----cccCcccccc
Q 022005 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTI 276 (304)
Q Consensus 201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~~~~ 276 (304)
++.++|+|+|.+ ++.++++++++. ++++.+.+++++.+||++++ ++++|+|+.+|+++.... ...++.++|.
T Consensus 332 l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~ 407 (454)
T TIGR01137 332 LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKANPDDAVSKVMS 407 (454)
T ss_pred hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCCcCCCHHHhcC
Confidence 678899999986 678899999998 99999999999999999864 799999999999864321 2346888887
Q ss_pred cccceecCCCCCchhHHHHHHHHHhhc
Q 022005 277 RRIPRYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 277 ~~~~~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
+++.+++++++ +.++++.|+++
T Consensus 408 ~~~~~v~~~~~-----l~~a~~~~~~~ 429 (454)
T TIGR01137 408 KKFIQIGEGEK-----LSDLSKFLEKN 429 (454)
T ss_pred CCCeEECCcCc-----HHHHHHHHHHC
Confidence 77889999999 99999999753
No 23
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.67 E-value=7.6e-08 Score=74.77 Aligned_cols=82 Identities=27% Similarity=0.405 Sum_probs=69.4
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc--ccCcccccccccceecCCCCCchhH
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--EVPVKSVTIRRIPRYLISLGKCSCA 292 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~--~~~v~~~~~~~~~~v~~~~~~~~~~ 292 (304)
++.++++++++. ++.+.+.+++++++||.+++ ++++|+++.+|+.+...+. ..++.++|..++..++++++
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~----- 74 (111)
T cd04603 2 QTVSVNCENPLR-EAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSK----- 74 (111)
T ss_pred ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCc-----
Confidence 467899999998 99999999999999999864 8999999999998643322 24688998888889999999
Q ss_pred HHHHHHHHhhc
Q 022005 293 LFRSLSLFSTS 303 (304)
Q Consensus 293 l~~~l~~m~~~ 303 (304)
+.++++.|.++
T Consensus 75 l~~al~~m~~~ 85 (111)
T cd04603 75 VTDLLRIFRET 85 (111)
T ss_pred HHHHHHHHHHc
Confidence 99999999764
No 24
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.67 E-value=7e-08 Score=75.09 Aligned_cols=82 Identities=18% Similarity=0.252 Sum_probs=68.3
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC-C----ccccCcccccccccceecCCCCCc
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH-P----EDEVPVKSVTIRRIPRYLISLGKC 289 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~-~----~~~~~v~~~~~~~~~~v~~~~~~~ 289 (304)
++.++++++++. ++++.+.+.+++.+||++++.++++|+++.+|+++.. . ....++.++|.+++.+++++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~-- 78 (114)
T cd04630 2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMD-- 78 (114)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCC--
Confidence 567899999998 9999999999999999985337999999999997632 1 1234678887788899999999
Q ss_pred hhHHHHHHHHHhh
Q 022005 290 SCALFRSLSLFST 302 (304)
Q Consensus 290 ~~~l~~~l~~m~~ 302 (304)
+.++++.|.+
T Consensus 79 ---l~~~~~~~~~ 88 (114)
T cd04630 79 ---IKYCARLMER 88 (114)
T ss_pred ---HHHHHHHHHH
Confidence 9999999975
No 25
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.66 E-value=1.9e-08 Score=82.18 Aligned_cols=108 Identities=21% Similarity=0.298 Sum_probs=82.7
Q ss_pred CCCCCChhH---HHHHhhhhcc--ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEe
Q 022005 183 KGGELTHDE---TTIIAGALEL--TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257 (304)
Q Consensus 183 ~~g~l~~~e---~~~i~~~l~l--~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~ 257 (304)
|.|.+++.= +.+++...+- ...+++.+|+ .+++.+.+++++. ++++.|.++|||.+||+++ |.++|-++.
T Consensus 39 E~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~--spvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsItE 113 (187)
T COG3620 39 EAGKVDPRLSTVKRILEALEEAEKTRITAKTIMH--SPVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSITE 113 (187)
T ss_pred hcCCCCccHHHHHHHHHHHHHhhcceEeHhhhcc--CCeeEECchhhHH-HHHHHHHHcCCccCceeeC--CeeeeeecH
Confidence 347777643 2223222222 3468999998 4899999999998 9999999999999999985 799999999
Q ss_pred chhcccCCc-----cccCcccccccccceecCCCCCchhHHHHHHHHH
Q 022005 258 KNLLTIHPE-----DEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLF 300 (304)
Q Consensus 258 kDll~~~~~-----~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m 300 (304)
.|+.+..-+ ...+++++|-.+.+.|.++.+ +...-+.+
T Consensus 114 ~~iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~~~-----l~vI~~LL 156 (187)
T COG3620 114 NDIVRALLEGMESIRSLRVREVMGEPFPTVSPDES-----LNVISQLL 156 (187)
T ss_pred HHHHHHHhccccchhhhhHHHHhcCCCCcCCCCCC-----HHHHHHHH
Confidence 999875422 246889998888899999999 66554443
No 26
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.63 E-value=9.1e-08 Score=75.35 Aligned_cols=82 Identities=13% Similarity=0.232 Sum_probs=68.8
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc--------------ccCcccccccccc
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--------------EVPVKSVTIRRIP 280 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~--------------~~~v~~~~~~~~~ 280 (304)
++.++++++++. ++.+.+.+.+++++||++++ ++++|+++.+|++...... ..++.++|.+++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (124)
T cd04600 3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV 80 (124)
T ss_pred CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence 567899999998 99999999999999999865 8999999999997643211 2367888778899
Q ss_pred eecCCCCCchhHHHHHHHHHhhc
Q 022005 281 RYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 281 ~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
+++++++ +.++++.|+++
T Consensus 81 ~~~~~~~-----l~~~~~~~~~~ 98 (124)
T cd04600 81 TVRPDTP-----IAELVPLLADG 98 (124)
T ss_pred eeCCCCc-----HHHHHHHHHhc
Confidence 9999999 99999999753
No 27
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.63 E-value=1.3e-07 Score=72.37 Aligned_cols=70 Identities=14% Similarity=0.324 Sum_probs=60.5
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHH
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALF 294 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~ 294 (304)
+++++++++++. ++.+.+.+++++.+||++++.++++|+++.+|+.+... +.++.++++ +.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~-------------~~~v~~~~~-----l~ 62 (98)
T cd04618 2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-------------LVSIHPERS-----LF 62 (98)
T ss_pred eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-------------eEEeCCCCc-----HH
Confidence 578899999999 99999999999999999864478999999999975321 667899999 99
Q ss_pred HHHHHHhhc
Q 022005 295 RSLSLFSTS 303 (304)
Q Consensus 295 ~~l~~m~~~ 303 (304)
++++.|.++
T Consensus 63 ~a~~~m~~~ 71 (98)
T cd04618 63 DAALLLLKN 71 (98)
T ss_pred HHHHHHHHC
Confidence 999999764
No 28
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.62 E-value=6.2e-08 Score=74.87 Aligned_cols=82 Identities=18% Similarity=0.290 Sum_probs=68.9
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc----cccCcccccccccceecCCCCCch
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRYLISLGKCS 290 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~~~~~~~~~v~~~~~~~~ 290 (304)
++.++++++++. ++.+.+.+.+++++||++++ |+++|+++.+|+.+.... +..++.++|.+++.+++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~--- 76 (114)
T cd04613 2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDS--- 76 (114)
T ss_pred CceeeCCCCcHH-HHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCC---
Confidence 456799999999 99999999999999999865 899999999999764321 125688888788999999999
Q ss_pred hHHHHHHHHHhhc
Q 022005 291 CALFRSLSLFSTS 303 (304)
Q Consensus 291 ~~l~~~l~~m~~~ 303 (304)
+.++++.|+++
T Consensus 77 --~~~~~~~~~~~ 87 (114)
T cd04613 77 --LEDALKKFEDS 87 (114)
T ss_pred --HHHHHHHHhhC
Confidence 99999999753
No 29
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.61 E-value=8.3e-08 Score=74.56 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=68.1
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc---------ccCcccccccccceecCC
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED---------EVPVKSVTIRRIPRYLIS 285 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~---------~~~v~~~~~~~~~~v~~~ 285 (304)
++.+++.++++. ++.+.+.+.+++++||++++ ++++|+++.+|+++...+. ..++.++|.+++..++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~ 79 (116)
T cd04643 2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDD 79 (116)
T ss_pred CcEEECCCCcHH-HHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCC
Confidence 567899999998 99999999999999999864 7999999999997643211 346788877788899999
Q ss_pred CCCchhHHHHHHHHHhh
Q 022005 286 LGKCSCALFRSLSLFST 302 (304)
Q Consensus 286 ~~~~~~~l~~~l~~m~~ 302 (304)
++ +.++++.|.+
T Consensus 80 ~~-----l~~a~~~~~~ 91 (116)
T cd04643 80 AD-----IEEILHLLID 91 (116)
T ss_pred CC-----HHHHHHHHhc
Confidence 99 9999999965
No 30
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.61 E-value=9.5e-08 Score=73.61 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=68.8
Q ss_pred ceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHH
Q 022005 214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCAL 293 (304)
Q Consensus 214 ~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l 293 (304)
.++.+++++++++ ++.+.+.+++++++||++++ ++++|+++.+|++... ...++.++|.+++.+++++++ +
T Consensus 2 ~~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~v~~~~~-----l 72 (108)
T cd04596 2 EDTGYLTTTDTVK-DWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKD--PDTTIEKVMTKNPITVNPKTS-----V 72 (108)
T ss_pred CccEEeCCCCCHH-HHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhccc--ccccHHHHhcCCCeEECCCCC-----H
Confidence 3677899999998 99999999999999999864 8999999999997643 234688887788899999999 9
Q ss_pred HHHHHHHhh
Q 022005 294 FRSLSLFST 302 (304)
Q Consensus 294 ~~~l~~m~~ 302 (304)
.++++.|.+
T Consensus 73 ~~~~~~~~~ 81 (108)
T cd04596 73 ASVAHMMIW 81 (108)
T ss_pred HHHHHHHHH
Confidence 999999975
No 31
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.59 E-value=1.4e-07 Score=74.23 Aligned_cols=82 Identities=12% Similarity=0.187 Sum_probs=64.2
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccc-----cCcc------cccccccceec
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE-----VPVK------SVTIRRIPRYL 283 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~-----~~v~------~~~~~~~~~v~ 283 (304)
++.++++++++. ++.+.+.+++++++||+++ .|+++|+++.+|++....++. .++. +.|.+++.+++
T Consensus 2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (120)
T cd04641 2 NIATARPDTPLI-DVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS 79 (120)
T ss_pred CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEc
Confidence 567899999998 9999999999999999986 489999999999986432111 1122 22335578899
Q ss_pred CCCCCchhHHHHHHHHHhhc
Q 022005 284 ISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 284 ~~~~~~~~~l~~~l~~m~~~ 303 (304)
++++ +.++++.|.++
T Consensus 80 ~~~~-----l~~~~~~m~~~ 94 (120)
T cd04641 80 PDDC-----LRTIFDLIVKA 94 (120)
T ss_pred CCCc-----HHHHHHHHHhc
Confidence 9999 99999999763
No 32
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.58 E-value=1e-07 Score=74.90 Aligned_cols=82 Identities=18% Similarity=0.286 Sum_probs=68.4
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc-------------cccCcccccccccce
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-------------DEVPVKSVTIRRIPR 281 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~-------------~~~~v~~~~~~~~~~ 281 (304)
++.++++++++. ++.+.+.+.+++++||++++ ++++|+++.+|+++.... ...++.++|.+++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (122)
T cd04803 2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLT 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeE
Confidence 456789999998 99999999999999999864 899999999998764321 234677887778899
Q ss_pred ecCCCCCchhHHHHHHHHHhhc
Q 022005 282 YLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 282 v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
++++++ +.++++.|+++
T Consensus 80 v~~~~~-----~~~~~~~~~~~ 96 (122)
T cd04803 80 VTPDTP-----LREAAEIMVEN 96 (122)
T ss_pred eCCCCc-----HHHHHHHHHHc
Confidence 999999 99999999753
No 33
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.58 E-value=1e-07 Score=93.00 Aligned_cols=91 Identities=12% Similarity=0.167 Sum_probs=78.5
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccce
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~ 281 (304)
+..+++++|++ +++++++++++. ++.+.+.+++++.+||++++ ++++|+|+.+|+..... ..++.++|.+++.+
T Consensus 87 ~~VKv~~iMi~--~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~~~--~~~V~diMt~~~it 160 (479)
T PRK07807 87 AWVKSRDLVFD--TPVTLSPDDTVG-DALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGVDR--FTQVRDVMSTDLVT 160 (479)
T ss_pred hhccccccccc--CCeEECCCCCHH-HHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcCcc--CCCHHHhccCCceE
Confidence 35578899975 788999999998 99999999999999999864 79999999999965432 35699999899999
Q ss_pred ecCCCCCchhHHHHHHHHHhhc
Q 022005 282 YLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 282 v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
++++++ +.++++.|.++
T Consensus 161 V~~d~s-----L~eAl~lM~~~ 177 (479)
T PRK07807 161 LPAGTD-----PREAFDLLEAA 177 (479)
T ss_pred ECCCCc-----HHHHHHHHHhc
Confidence 999999 99999999764
No 34
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.56 E-value=1.9e-07 Score=72.84 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=68.9
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC-----ccccCcccccccccceecCCCCCc
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-----EDEVPVKSVTIRRIPRYLISLGKC 289 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~-----~~~~~v~~~~~~~~~~v~~~~~~~ 289 (304)
++.++++++++. ++.+.+.+.++..+||++++ ++++|+++.+|+.+... ....++.++|.+++..++++++
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~-- 77 (114)
T cd04619 2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDL-- 77 (114)
T ss_pred ceEEECCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCC--
Confidence 456789999998 99999999999999999864 89999999999876432 1235788888788899999999
Q ss_pred hhHHHHHHHHHhhc
Q 022005 290 SCALFRSLSLFSTS 303 (304)
Q Consensus 290 ~~~l~~~l~~m~~~ 303 (304)
+.++++.|.++
T Consensus 78 ---l~~a~~~m~~~ 88 (114)
T cd04619 78 ---LHDVWQVMKQR 88 (114)
T ss_pred ---HHHHHHHHHHc
Confidence 99999999764
No 35
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.56 E-value=9e-08 Score=86.48 Aligned_cols=92 Identities=13% Similarity=0.122 Sum_probs=77.8
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC---ccccCcccccccccc
Q 022005 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---EDEVPVKSVTIRRIP 280 (304)
Q Consensus 204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~---~~~~~v~~~~~~~~~ 280 (304)
++|+|+|.+. ++.++++++++. ++++.+.+.+++.+||++++ ++++|+++.+|+.+... ....+++++|.+++.
T Consensus 155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~ 231 (268)
T TIGR00393 155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK 231 (268)
T ss_pred hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence 6899999863 277899999998 99999999999999999865 89999999999976432 124578999888888
Q ss_pred eecCCCCCchhHHHHHHHHHhhc
Q 022005 281 RYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 281 ~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
.++++++ +.++++.|.++
T Consensus 232 ~v~~~~~-----l~~a~~~m~~~ 249 (268)
T TIGR00393 232 TFKLDAL-----LLEALEFLERR 249 (268)
T ss_pred EECCCCc-----HHHHHHHHHHc
Confidence 9999999 99999999764
No 36
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.56 E-value=1.2e-07 Score=74.85 Aligned_cols=83 Identities=17% Similarity=0.308 Sum_probs=68.6
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc---------------ccCccccccccc
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED---------------EVPVKSVTIRRI 279 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~---------------~~~v~~~~~~~~ 279 (304)
++.++++++++. ++++.+.+++++++||++++.|+++|+++.+|++....+. ..++.++|.+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04631 2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV 80 (125)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence 456789999998 9999999999999999986448999999999998643221 236778877789
Q ss_pred ceecCCCCCchhHHHHHHHHHhhc
Q 022005 280 PRYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 280 ~~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
.+++++++ +.++++.|+++
T Consensus 81 ~~v~~~~~-----l~~~~~~~~~~ 99 (125)
T cd04631 81 ITITPDDS-----IKDAAELMLEK 99 (125)
T ss_pred eEeCCCCc-----HHHHHHHHHHc
Confidence 99999999 99999998753
No 37
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.53 E-value=1.4e-07 Score=72.80 Aligned_cols=82 Identities=21% Similarity=0.308 Sum_probs=68.4
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC--ccccCcccccccccceecCCCCCchhH
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP--EDEVPVKSVTIRRIPRYLISLGKCSCA 292 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~--~~~~~v~~~~~~~~~~v~~~~~~~~~~ 292 (304)
+..++++++++. ++.+.+.+.+++++||++++ ++++|+++.+|+.+... ....++.++|.+++.+++++++
T Consensus 2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~----- 74 (111)
T cd04639 2 HFETLSPADTLD-DAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSAT----- 74 (111)
T ss_pred CceEcCCCCcHH-HHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCc-----
Confidence 456789999998 89999988999999999864 89999999999976422 1234788887788999999999
Q ss_pred HHHHHHHHhhc
Q 022005 293 LFRSLSLFSTS 303 (304)
Q Consensus 293 l~~~l~~m~~~ 303 (304)
+.++++.|+++
T Consensus 75 ~~~~~~~~~~~ 85 (111)
T cd04639 75 LDAVLRLMQQG 85 (111)
T ss_pred HHHHHHHHHhc
Confidence 99999999753
No 38
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.53 E-value=1.8e-07 Score=75.86 Aligned_cols=82 Identities=17% Similarity=0.190 Sum_probs=65.1
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcccc---C------------ccccc----
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEV---P------------VKSVT---- 275 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~---~------------v~~~~---- 275 (304)
++.++++++++. ++++.+.+++++.+||++++ ++++|+++.+|+++....... . +.++|
T Consensus 2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 79 (133)
T cd04592 2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI 79 (133)
T ss_pred CceEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence 567899999999 99999999999999999864 899999999998864321110 1 22343
Q ss_pred -----ccccceecCCCCCchhHHHHHHHHHhhc
Q 022005 276 -----IRRIPRYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 276 -----~~~~~~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
.+++.+++++++ +.++++.|.++
T Consensus 80 ~~~~~~~~~~~v~~~~~-----l~ea~~~m~~~ 107 (133)
T cd04592 80 SYGGQECGLWTCTPDTD-----LTTAKKLMEAK 107 (133)
T ss_pred hhcccCCCCEEECCCCC-----HHHHHHHHHHc
Confidence 356888999999 99999999764
No 39
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.53 E-value=2e-07 Score=71.73 Aligned_cols=81 Identities=16% Similarity=0.243 Sum_probs=67.8
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc--ccCcccccccccceecCCCCCchhH
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--EVPVKSVTIRRIPRYLISLGKCSCA 292 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~--~~~v~~~~~~~~~~v~~~~~~~~~~ 292 (304)
++.+++.++++. ++.+.+.+.+++++||+++ ++++|+++.+|+++....+ ..++.++|.+++.+++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~----- 73 (110)
T cd04588 2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQ----- 73 (110)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCC-----
Confidence 456789999998 9999999999999999985 7999999999998754322 24677887778899999999
Q ss_pred HHHHHHHHhhc
Q 022005 293 LFRSLSLFSTS 303 (304)
Q Consensus 293 l~~~l~~m~~~ 303 (304)
+.++++.|+++
T Consensus 74 ~~~~~~~~~~~ 84 (110)
T cd04588 74 LYDAIRLMNKH 84 (110)
T ss_pred HHHHHHHHHhc
Confidence 99999999753
No 40
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.53 E-value=1.8e-07 Score=75.75 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=67.8
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc---------------------------c
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---------------------------D 267 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~---------------------------~ 267 (304)
++.++++++++. ++++.+.+.+++++||++++ ++++|+++.+|+++.... .
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (135)
T cd04621 2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV 79 (135)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence 466789999998 99999999999999999864 899999999999864321 1
Q ss_pred ccCcccccccccceecCCCCCchhHHHHHHHHHhh
Q 022005 268 EVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFST 302 (304)
Q Consensus 268 ~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~ 302 (304)
..++.++|.+++.+++++++ +.++++.|.+
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~-----l~~~~~~~~~ 109 (135)
T cd04621 80 PLVAEDIMTEEIITVSPNDD-----VVDAAKLMLE 109 (135)
T ss_pred cccHHHhcCCCCeEECCCCC-----HHHHHHHHHH
Confidence 23688887778889999999 9999999965
No 41
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.53 E-value=1.9e-07 Score=71.85 Aligned_cols=81 Identities=17% Similarity=0.306 Sum_probs=67.7
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccc---cCcccccccccceecCCCCCchh
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE---VPVKSVTIRRIPRYLISLGKCSC 291 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~---~~v~~~~~~~~~~v~~~~~~~~~ 291 (304)
++.++++++++. ++.+.+.+.+++++||+++ ++++|+++.+|+.+....+. .++.++|.+++.+++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---- 74 (111)
T cd04612 2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDET---- 74 (111)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCC----
Confidence 456789999998 9999999999999999985 89999999999986443221 2567777888999999999
Q ss_pred HHHHHHHHHhhc
Q 022005 292 ALFRSLSLFSTS 303 (304)
Q Consensus 292 ~l~~~l~~m~~~ 303 (304)
+.++++.|+++
T Consensus 75 -~~~~~~~~~~~ 85 (111)
T cd04612 75 -LRDALKRMAER 85 (111)
T ss_pred -HHHHHHHHHhC
Confidence 99999999763
No 42
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.52 E-value=2.5e-07 Score=71.18 Aligned_cols=80 Identities=15% Similarity=0.224 Sum_probs=67.8
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc---cccCcccccccccceecCCCCCchh
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---DEVPVKSVTIRRIPRYLISLGKCSC 291 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~---~~~~v~~~~~~~~~~v~~~~~~~~~ 291 (304)
++.++++++++. ++.+.+.+++++.+||+++ ++++|+++.+|+.+.... ...++.++|.+++.+++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---- 74 (111)
T cd04611 2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTS---- 74 (111)
T ss_pred CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCC----
Confidence 456789999998 9999999999999999975 899999999999865421 245688887788889999999
Q ss_pred HHHHHHHHHhh
Q 022005 292 ALFRSLSLFST 302 (304)
Q Consensus 292 ~l~~~l~~m~~ 302 (304)
+.++++.|++
T Consensus 75 -l~~~l~~~~~ 84 (111)
T cd04611 75 -LYDARQLMRE 84 (111)
T ss_pred -HHHHHHHHHH
Confidence 9999999975
No 43
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.50 E-value=2.7e-07 Score=71.30 Aligned_cols=81 Identities=15% Similarity=0.224 Sum_probs=67.5
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc---cccCcccccccccceecCCCCCchh
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---DEVPVKSVTIRRIPRYLISLGKCSC 291 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~---~~~~v~~~~~~~~~~v~~~~~~~~~ 291 (304)
++.+++.++++. ++.+.+.+.+++++||++++ ++++|+++.+|+++...+ ...++.++|.+++..++++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~---- 75 (112)
T cd04624 2 PVVTVDPDTSIR-EAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEP---- 75 (112)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCc----
Confidence 345789999998 99999999999999999865 899999999999764322 234677887788889999999
Q ss_pred HHHHHHHHHhh
Q 022005 292 ALFRSLSLFST 302 (304)
Q Consensus 292 ~l~~~l~~m~~ 302 (304)
+.++++.|.+
T Consensus 76 -~~~~~~~~~~ 85 (112)
T cd04624 76 -VAEAAKLMRK 85 (112)
T ss_pred -HHHHHHHHHH
Confidence 9999999975
No 44
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.50 E-value=3.6e-07 Score=70.02 Aligned_cols=80 Identities=20% Similarity=0.261 Sum_probs=67.2
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHH
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALF 294 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~ 294 (304)
++.++++++++. ++.+.+.+.+++++||++++ ++++|+++.+|+..... ..++.++|.+++.+++++++ +.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~-----l~ 72 (106)
T cd04638 2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNPE--EEQLALLMTRDPPTVSPDDD-----VK 72 (106)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhccc--cchHHHHhcCCCceECCCCC-----HH
Confidence 567899999998 89999999999999999865 89999999999976432 23567777778889999999 99
Q ss_pred HHHHHHhhc
Q 022005 295 RSLSLFSTS 303 (304)
Q Consensus 295 ~~l~~m~~~ 303 (304)
++++.|+++
T Consensus 73 ~~~~~~~~~ 81 (106)
T cd04638 73 EAAKLMVEN 81 (106)
T ss_pred HHHHHHHHc
Confidence 999999753
No 45
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.50 E-value=2e-07 Score=72.16 Aligned_cols=82 Identities=12% Similarity=0.171 Sum_probs=67.8
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC------ccccCcccccccccceecCCCCC
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP------EDEVPVKSVTIRRIPRYLISLGK 288 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~------~~~~~v~~~~~~~~~~v~~~~~~ 288 (304)
++.++++++++. ++.+.+.+.+++++||++++ ++++|+++.+|+++... ....++.++|.+++.+++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~- 78 (114)
T cd04629 2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDS- 78 (114)
T ss_pred CCeEeCCCCCHH-HHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCc-
Confidence 456789999998 99999998899999999864 79999999999986321 1245788887778888999999
Q ss_pred chhHHHHHHHHHhhc
Q 022005 289 CSCALFRSLSLFSTS 303 (304)
Q Consensus 289 ~~~~l~~~l~~m~~~ 303 (304)
+.++++.|.++
T Consensus 79 ----l~~~~~~~~~~ 89 (114)
T cd04629 79 ----IVDLAQLMLKA 89 (114)
T ss_pred ----HHHHHHHHHHh
Confidence 99999999764
No 46
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.49 E-value=3.1e-07 Score=70.84 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=67.7
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC-Cc---cccCcccccccccceecCCCCCch
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH-PE---DEVPVKSVTIRRIPRYLISLGKCS 290 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~-~~---~~~~v~~~~~~~~~~v~~~~~~~~ 290 (304)
++.+++.++++. ++.+.+.+.+++++||+++ ++++|+++.+|++... .. .+.++.++|.+++.+++++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~--- 75 (111)
T cd04800 2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDAT--- 75 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCc---
Confidence 566789999998 9999999999999999985 8999999999987531 11 234678887788999999999
Q ss_pred hHHHHHHHHHhhc
Q 022005 291 CALFRSLSLFSTS 303 (304)
Q Consensus 291 ~~l~~~l~~m~~~ 303 (304)
+.++++.|+++
T Consensus 76 --l~~~~~~~~~~ 86 (111)
T cd04800 76 --VFEALLLMLER 86 (111)
T ss_pred --HHHHHHHHHHc
Confidence 99999999764
No 47
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.49 E-value=2.5e-07 Score=73.46 Aligned_cols=82 Identities=12% Similarity=0.228 Sum_probs=67.7
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC-----------------ccccCccccccc
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-----------------EDEVPVKSVTIR 277 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~-----------------~~~~~v~~~~~~ 277 (304)
++.++++++++. ++.+.+.+.+++.+||++++ ++++|+++.+|+..... ....++.++|.+
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (128)
T cd04632 2 DVITVREDDSVG-KAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS 79 (128)
T ss_pred CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC
Confidence 456789999998 99999999999999999865 89999999999874321 012357788778
Q ss_pred ccceecCCCCCchhHHHHHHHHHhhc
Q 022005 278 RIPRYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 278 ~~~~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
++.+++++++ +.++++.|.++
T Consensus 80 ~~~~v~~~~~-----l~~~l~~~~~~ 100 (128)
T cd04632 80 PVITASPNDS-----VRDAVDRMLEN 100 (128)
T ss_pred CCceECCCCc-----HHHHHHHHHhC
Confidence 8899999999 99999999764
No 48
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.48 E-value=3.2e-07 Score=71.40 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=67.8
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc----cccCcccccccccceecCCCCCch
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRYLISLGKCS 290 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~~~~~~~~~v~~~~~~~~ 290 (304)
++.++++++++. ++.+.+.+.+++++||++++ |+++|+++.+|+.+...+ ...++.++|.+++.+++++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--- 76 (115)
T cd04593 2 PPPVLSATTPLR-EAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEP--- 76 (115)
T ss_pred CCcEeCCCCCHH-HHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCC---
Confidence 345688999998 99999999999999999864 899999999999864322 123477887788999999999
Q ss_pred hHHHHHHHHHhhc
Q 022005 291 CALFRSLSLFSTS 303 (304)
Q Consensus 291 ~~l~~~l~~m~~~ 303 (304)
+.++++.|+++
T Consensus 77 --l~~~l~~~~~~ 87 (115)
T cd04593 77 --LAHALDRMASR 87 (115)
T ss_pred --HHHHHHHHHHc
Confidence 99999999764
No 49
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.48 E-value=3.8e-07 Score=72.35 Aligned_cols=82 Identities=18% Similarity=0.215 Sum_probs=65.9
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcccc-----------------Cccccccc
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEV-----------------PVKSVTIR 277 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~-----------------~v~~~~~~ 277 (304)
++.++++++++. ++++.+.+++++++||++++ |+++|+++.+|+++...++.. ...+.|.+
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T cd04642 2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR 79 (126)
T ss_pred CeEEECCCccHH-HHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC
Confidence 567899999998 99999999999999999865 899999999999875422111 11234567
Q ss_pred ccceecCCCCCchhHHHHHHHHHhhc
Q 022005 278 RIPRYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 278 ~~~~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
++.+++++++ +.++++.|.++
T Consensus 80 ~~~~v~~~~~-----l~~a~~~~~~~ 100 (126)
T cd04642 80 PLITCTPSST-----LKEVITKLVAN 100 (126)
T ss_pred CCeEECCCCc-----HHHHHHHHHHh
Confidence 8889999999 99999999753
No 50
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.48 E-value=2.6e-07 Score=73.95 Aligned_cols=81 Identities=14% Similarity=0.232 Sum_probs=66.8
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc----c--------------------cC
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED----E--------------------VP 270 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~----~--------------------~~ 270 (304)
++.++++++++. ++.+.+.+.+++++||++++ ++++|+++.+|+.+..... . .+
T Consensus 2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (132)
T cd04636 2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK 79 (132)
T ss_pred CCeEeCCCCcHH-HHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence 456789999998 99999999999999999864 8999999999997643211 1 16
Q ss_pred cccccccccceecCCCCCchhHHHHHHHHHhh
Q 022005 271 VKSVTIRRIPRYLISLGKCSCALFRSLSLFST 302 (304)
Q Consensus 271 v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~ 302 (304)
+.++|.+++..++++++ +.++++.|.+
T Consensus 80 v~~~~~~~~~~v~~~~~-----l~~~~~~~~~ 106 (132)
T cd04636 80 VEEIMTKKVITVDEDTT-----IEDVARIMSK 106 (132)
T ss_pred HHHhccCCceEECCCCc-----HHHHHHHHHH
Confidence 77887788899999999 9999999965
No 51
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.47 E-value=4e-07 Score=89.29 Aligned_cols=81 Identities=14% Similarity=0.173 Sum_probs=68.3
Q ss_pred EEEeCCCCccHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEechhcccCCccccCccccccc--ccceecCCCCCchhH
Q 022005 217 FAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPEDEVPVKSVTIR--RIPRYLISLGKCSCA 292 (304)
Q Consensus 217 ~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~--~~~ivGiv~~kDll~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~ 292 (304)
.++++++|+. ++++.+.+++++.+||++++ .++++|+|+.+|+.......+.+++++|.+ ++.+++++.+
T Consensus 108 ~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~~~V~dIMt~~~~~itv~~d~~----- 181 (502)
T PRK07107 108 SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDTKVKDFMTPFEKLVTANEGTT----- 181 (502)
T ss_pred CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCCCCHHHHhCCCCCeEEECCCCc-----
Confidence 5899999999 99999999999999999852 479999999999975432335679999765 6778899999
Q ss_pred HHHHHHHHhhc
Q 022005 293 LFRSLSLFSTS 303 (304)
Q Consensus 293 l~~~l~~m~~~ 303 (304)
+.++++.|+++
T Consensus 182 l~eAl~lM~e~ 192 (502)
T PRK07107 182 LKEANDIIWDH 192 (502)
T ss_pred HHHHHHHHHHc
Confidence 99999999764
No 52
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.47 E-value=3.2e-07 Score=70.73 Aligned_cols=83 Identities=34% Similarity=0.479 Sum_probs=67.9
Q ss_pred ceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccc--cCcccccccccceecCCCCCchh
Q 022005 214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE--VPVKSVTIRRIPRYLISLGKCSC 291 (304)
Q Consensus 214 ~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~--~~v~~~~~~~~~~v~~~~~~~~~ 291 (304)
+++.++++++++. ++.+.+.+.+++.+||++++.++++|+++.+|+++...++. .++.++ ++++.+++++++
T Consensus 1 ~~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~v~~~~~---- 74 (111)
T cd04590 1 TDIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL-LRPPLFVPESTP---- 74 (111)
T ss_pred CceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH-hcCCeecCCCCc----
Confidence 3677899999998 99999999999999999754378999999999987543221 346665 578889999999
Q ss_pred HHHHHHHHHhhc
Q 022005 292 ALFRSLSLFSTS 303 (304)
Q Consensus 292 ~l~~~l~~m~~~ 303 (304)
+.++++.|.++
T Consensus 75 -l~~~~~~~~~~ 85 (111)
T cd04590 75 -LDDLLEEMRKE 85 (111)
T ss_pred -HHHHHHHHHhc
Confidence 99999999863
No 53
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.47 E-value=4.4e-07 Score=89.04 Aligned_cols=100 Identities=10% Similarity=0.243 Sum_probs=79.5
Q ss_pred hHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEechhcccCCcc
Q 022005 190 DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPED 267 (304)
Q Consensus 190 ~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~--~~~ivGiv~~kDll~~~~~~ 267 (304)
++.+.++++. ++++.|++ +++++++++|+. ++.+.+.+++++++||++++ .++++|+|+.+|+.... ..
T Consensus 87 ~~~~~v~kvk-----~~e~g~i~--dpvtv~pd~tv~-eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-~~ 157 (495)
T PTZ00314 87 EQVEEVRKVK-----RFENGFIM--DPYVLSPNHTVA-DVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK-DK 157 (495)
T ss_pred HHHHHHhhcc-----cccccccc--CCeecCCCCCHH-HHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc-cC
Confidence 3455666655 34557764 667899999998 99999999999999999863 37899999999997433 23
Q ss_pred ccCccccccc--ccceecCCCCCchhHHHHHHHHHhhc
Q 022005 268 EVPVKSVTIR--RIPRYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 268 ~~~v~~~~~~--~~~~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
..+++++|.+ ++.+++++++ +.++++.|+++
T Consensus 158 ~~~V~diMt~~~~lvtv~~~~s-----l~eAl~lm~e~ 190 (495)
T PTZ00314 158 STPVSEVMTPREKLVVGNTPIS-----LEEANEVLRES 190 (495)
T ss_pred CCCHHHhhCCcCCceEeCCCCC-----HHHHHHHHHHc
Confidence 4679999765 6888999999 99999999764
No 54
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.47 E-value=3.8e-07 Score=71.58 Aligned_cols=82 Identities=15% Similarity=0.280 Sum_probs=67.3
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC-------------ccccCcccccccccce
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-------------EDEVPVKSVTIRRIPR 281 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~-------------~~~~~v~~~~~~~~~~ 281 (304)
++.++++++++. ++.+.+.+.+++++||+++ .|+++|+++.+|+++... ....++.++|.+++..
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd04635 2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQK-AGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYS 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcccEECC-CCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCee
Confidence 567899999998 9999999999999999975 489999999999976310 0234577787778889
Q ss_pred ecCCCCCchhHHHHHHHHHhhc
Q 022005 282 YLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 282 v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
++++++ +.++++.|+++
T Consensus 80 v~~~~~-----l~~~~~~~~~~ 96 (122)
T cd04635 80 VTPDDS-----IATAVELMLEH 96 (122)
T ss_pred ECCCCC-----HHHHHHHHHHc
Confidence 999999 99999999753
No 55
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.46 E-value=5.7e-07 Score=68.50 Aligned_cols=79 Identities=16% Similarity=0.278 Sum_probs=67.0
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHH
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALF 294 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~ 294 (304)
++.++++++++. ++++.+.+++++++||++ + ++++|+++.+|+.+... ..++.++|..++.+++++++ +.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d-~-~~~~Giv~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~-----l~ 71 (105)
T cd04599 2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVE-D-GKLVGIITSRDVRRAHP--NRLVADAMTREVVTISPEAS-----LL 71 (105)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CEEEEEEehHHhhcccc--cCCHHHHccCCCEEECCCCC-----HH
Confidence 456789999998 999999999999999997 3 79999999999987543 34678887778889999999 99
Q ss_pred HHHHHHhhc
Q 022005 295 RSLSLFSTS 303 (304)
Q Consensus 295 ~~l~~m~~~ 303 (304)
++++.|.++
T Consensus 72 ~~~~~~~~~ 80 (105)
T cd04599 72 EAKRLMEEK 80 (105)
T ss_pred HHHHHHHHc
Confidence 999999754
No 56
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.45 E-value=3.8e-07 Score=70.26 Aligned_cols=81 Identities=19% Similarity=0.254 Sum_probs=68.4
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc--cccCcccccccccceecCCCCCchhH
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIRRIPRYLISLGKCSCA 292 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~--~~~~v~~~~~~~~~~v~~~~~~~~~~ 292 (304)
++.+++.++++. ++.+.+.+.+++++||+++ ++++|+++.+|+.+.... ...++.++|.+++.+++++++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----- 74 (110)
T cd04595 3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTP----- 74 (110)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCc-----
Confidence 566889999998 9999999899999999985 799999999998764321 235788888788999999999
Q ss_pred HHHHHHHHhhc
Q 022005 293 LFRSLSLFSTS 303 (304)
Q Consensus 293 l~~~l~~m~~~ 303 (304)
+.++++.|+++
T Consensus 75 l~~~~~~~~~~ 85 (110)
T cd04595 75 LSEVQELMVEH 85 (110)
T ss_pred HHHHHHHHHHc
Confidence 99999999754
No 57
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.45 E-value=5.1e-07 Score=69.18 Aligned_cols=80 Identities=15% Similarity=0.227 Sum_probs=67.5
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHH
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALF 294 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~ 294 (304)
++..+++++++. ++.+.+.+.+++++||++++ ++++|+++.+|+...... ..++.++|.+++.+++++++ +.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~-~~~v~~~~~~~~~~v~~~~~-----~~ 74 (109)
T cd04583 3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYKE-AKSLEDIMLEDVFTVQPDAS-----LR 74 (109)
T ss_pred CCEEECCCCCHH-HHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhhc-CCcHhHhhcCCceEECCCCc-----HH
Confidence 456789999998 99999999999999999864 899999999999765322 34678887788889999999 99
Q ss_pred HHHHHHhh
Q 022005 295 RSLSLFST 302 (304)
Q Consensus 295 ~~l~~m~~ 302 (304)
++++.|++
T Consensus 75 ~~~~~~~~ 82 (109)
T cd04583 75 DVLGLVLK 82 (109)
T ss_pred HHHHHHHH
Confidence 99999975
No 58
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.44 E-value=6.4e-07 Score=68.58 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=64.5
Q ss_pred EEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHHHHH
Q 022005 218 AIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALFRSL 297 (304)
Q Consensus 218 ~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l 297 (304)
++++++++. ++++.+.+.+++++||+++ ++++|+++.+|+.+... .++.++|.+++.+++++.+ +.+++
T Consensus 5 ~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~---~~~~~~~~~~~~~v~~~~~-----l~~a~ 73 (104)
T cd04594 5 KVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY---GDVVDYIVRGIPYVRLTST-----AEEAW 73 (104)
T ss_pred EECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc---cchhhhhhcCCcEEcCCCC-----HHHHH
Confidence 688999998 9999999999999999984 89999999999986432 2467777778899999999 99999
Q ss_pred HHHhhc
Q 022005 298 SLFSTS 303 (304)
Q Consensus 298 ~~m~~~ 303 (304)
+.|+++
T Consensus 74 ~~~~~~ 79 (104)
T cd04594 74 EVMMKN 79 (104)
T ss_pred HHHHHc
Confidence 999764
No 59
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.44 E-value=6.5e-07 Score=68.39 Aligned_cols=79 Identities=10% Similarity=0.033 Sum_probs=65.3
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHH
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALF 294 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~ 294 (304)
++.++++++++. ++.+.+.+.+++++||++++ |+++|+++.+|+++... .++.++|.+++..++++++ +.
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~---~~~~~~~~~~~~~~~~~~~-----~~ 71 (106)
T cd04582 2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG---GCCGDHAEPFKVTVSVDDD-----LR 71 (106)
T ss_pred CCcEecCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc---cchhhhcccCCEEECCCCC-----HH
Confidence 456789999998 89999999999999999754 89999999999986532 2467886556677899999 99
Q ss_pred HHHHHHhhc
Q 022005 295 RSLSLFSTS 303 (304)
Q Consensus 295 ~~l~~m~~~ 303 (304)
++++.|.++
T Consensus 72 ~~~~~~~~~ 80 (106)
T cd04582 72 IVLSRMFAH 80 (106)
T ss_pred HHHHHHHHC
Confidence 999999764
No 60
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.44 E-value=4.6e-07 Score=69.90 Aligned_cols=81 Identities=17% Similarity=0.218 Sum_probs=67.2
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC----ccccCcccccccccceecCCCCCch
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP----EDEVPVKSVTIRRIPRYLISLGKCS 290 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~----~~~~~v~~~~~~~~~~v~~~~~~~~ 290 (304)
++++++.++++. ++++.+.+.+++++||+++ ++++|+++.+|+.+... ..+.++.++|.++...++++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~--- 75 (111)
T cd04589 2 PPLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDF--- 75 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCc---
Confidence 345789999998 9999999999999999985 78999999999876431 1235688887778889999999
Q ss_pred hHHHHHHHHHhhc
Q 022005 291 CALFRSLSLFSTS 303 (304)
Q Consensus 291 ~~l~~~l~~m~~~ 303 (304)
+.++++.|+++
T Consensus 76 --l~~~~~~~~~~ 86 (111)
T cd04589 76 --LFNALLLMTRH 86 (111)
T ss_pred --HHHHHHHHHHh
Confidence 99999999764
No 61
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.44 E-value=4e-07 Score=73.16 Aligned_cols=82 Identities=17% Similarity=0.233 Sum_probs=67.8
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC--------------------------ccc
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP--------------------------EDE 268 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~--------------------------~~~ 268 (304)
++.++++++++. ++.+.+.++++.++||++++ ++++|+++.+|+++... ...
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCEEeCCCCCHH-HHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 567899999998 99999999999999999854 89999999999875321 123
Q ss_pred cCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005 269 VPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 269 ~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
.++.++|.+++..++++++ +.++++.|+++
T Consensus 81 ~~v~~~~~~~~~~v~~~~~-----~~~~~~~~~~~ 110 (135)
T cd04586 81 RKVADVMTRPVVTVGEDTP-----LAEVAELMEEH 110 (135)
T ss_pred CCHHHHhCCCceEeCCCCc-----HHHHHHHHHHc
Confidence 4677887677889999999 99999999753
No 62
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.43 E-value=5e-07 Score=69.87 Aligned_cols=80 Identities=14% Similarity=0.235 Sum_probs=66.9
Q ss_pred EEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC-Cc---cccCcccccccccceecCCCCCchh
Q 022005 216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH-PE---DEVPVKSVTIRRIPRYLISLGKCSC 291 (304)
Q Consensus 216 v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~-~~---~~~~v~~~~~~~~~~v~~~~~~~~~ 291 (304)
+..+++++++. ++.+.+.+++++++||++++ ++++|+++.+|+.+.. .. ...++.++|.+++.+++++++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~---- 76 (113)
T cd04615 3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDS---- 76 (113)
T ss_pred CEEeeCCCcHH-HHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCc----
Confidence 45689999998 99999999999999999864 8999999999997632 11 234678887788899999999
Q ss_pred HHHHHHHHHhh
Q 022005 292 ALFRSLSLFST 302 (304)
Q Consensus 292 ~l~~~l~~m~~ 302 (304)
+.++++.|++
T Consensus 77 -l~~~~~~~~~ 86 (113)
T cd04615 77 -IAKARWLMSN 86 (113)
T ss_pred -HHHHHHHHHH
Confidence 9999999965
No 63
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.43 E-value=6.4e-07 Score=87.99 Aligned_cols=100 Identities=13% Similarity=0.184 Sum_probs=79.4
Q ss_pred hHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEechhcccCCcc
Q 022005 190 DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPED 267 (304)
Q Consensus 190 ~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~--~~~ivGiv~~kDll~~~~~~ 267 (304)
+.++.++.+.+. +..|++ +++++++++|+. ++.+.+.+++++.+||++++ .++++|+|+.+|+.... ..
T Consensus 91 ~q~~~Irkvk~~-----~~gmi~--dpvtV~pd~tV~-dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-~~ 161 (505)
T PLN02274 91 EQAAIVRKAKSR-----RVGFVS--DPVVKSPSSTIS-SLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-DR 161 (505)
T ss_pred HHHHHHHHhhcc-----cccccC--CCeeeCCCCcHH-HHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-cc
Confidence 445667777643 233664 778999999998 99999999999999999863 37999999999996543 33
Q ss_pred ccCcccccccc--cceecCCCCCchhHHHHHHHHHhhc
Q 022005 268 EVPVKSVTIRR--IPRYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 268 ~~~v~~~~~~~--~~~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
+.++.++|.++ +.+++++.+ +.++++.|+++
T Consensus 162 ~~~V~eIMt~~~~lvtv~~~~s-----L~eAl~~m~~~ 194 (505)
T PLN02274 162 ETKLSEVMTSDDDLVTAPAGID-----LEEAEAVLKDS 194 (505)
T ss_pred CCcHHHHhccCCCcEEECCCCC-----HHHHHHHHHHc
Confidence 56799997655 678999999 99999999764
No 64
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.42 E-value=4.5e-07 Score=70.43 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=64.5
Q ss_pred eEEEEeCCCCccHHHHHHHHhcC-CceeeeeeCCCCcEEEEEEechhcccCCc--cccCccccccc--ccceecCCCCCc
Q 022005 215 ETFAIDINAKLDKELMNLILEKG-HSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIR--RIPRYLISLGKC 289 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~-~sr~PV~~~~~~~ivGiv~~kDll~~~~~--~~~~v~~~~~~--~~~~v~~~~~~~ 289 (304)
++.++++++++. ++.+.+.+++ ++++||++++ ++++|+++.+|++....+ ...++.++|.. ++..++++++
T Consensus 2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~-- 77 (114)
T cd04801 2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEES-- 77 (114)
T ss_pred CcceeCCCCCHH-HHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCc--
Confidence 456789999998 8999887665 8999999864 899999999999875432 23467888532 2457889999
Q ss_pred hhHHHHHHHHHhhc
Q 022005 290 SCALFRSLSLFSTS 303 (304)
Q Consensus 290 ~~~l~~~l~~m~~~ 303 (304)
+.++++.|+++
T Consensus 78 ---l~~a~~~~~~~ 88 (114)
T cd04801 78 ---LAEVLKLLEEQ 88 (114)
T ss_pred ---HHHHHHHHHHC
Confidence 99999999764
No 65
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.42 E-value=5.8e-07 Score=70.13 Aligned_cols=81 Identities=16% Similarity=0.267 Sum_probs=67.3
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc--------------cccCcccccccccc
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--------------DEVPVKSVTIRRIP 280 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~--------------~~~~v~~~~~~~~~ 280 (304)
++.++++++++. ++.+.+.+.+++++||+++ ++++|+++.+|+...... ...++.++|.+++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04585 2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPI 78 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCe
Confidence 456789999999 9999999999999999985 899999999999864321 12457778777889
Q ss_pred eecCCCCCchhHHHHHHHHHhhc
Q 022005 281 RYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 281 ~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
+++++++ +.++++.|+++
T Consensus 79 ~v~~~~~-----l~~~~~~~~~~ 96 (122)
T cd04585 79 TVSPDAS-----VEEAAELMLER 96 (122)
T ss_pred EeCCCCc-----HHHHHHHHHHc
Confidence 9999999 99999999753
No 66
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.42 E-value=4.3e-07 Score=71.05 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=67.4
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC-------------ccccCcccccccccce
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-------------EDEVPVKSVTIRRIPR 281 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~-------------~~~~~v~~~~~~~~~~ 281 (304)
++.++++++++. ++.+.+.+.+++++||++++ ++++|+++.+|+.+... ....++.++|.+++.+
T Consensus 2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (121)
T cd04584 2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVIT 79 (121)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeE
Confidence 456789999998 99999999999999999865 89999999999875321 1124677887788889
Q ss_pred ecCCCCCchhHHHHHHHHHhhc
Q 022005 282 YLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 282 v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
++++++ +.++++.|+++
T Consensus 80 i~~~~~-----l~~~~~~~~~~ 96 (121)
T cd04584 80 VHPLDT-----VEEAALLMREH 96 (121)
T ss_pred ECCCCc-----HHHHHHHHHHc
Confidence 999999 99999998653
No 67
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.41 E-value=8.7e-07 Score=67.72 Aligned_cols=79 Identities=14% Similarity=0.367 Sum_probs=66.8
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHH
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALF 294 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~ 294 (304)
++.+++.+.++. ++.+.+.+.+++++||+++ ++++|+++.+|++... ...++.++|..++.+++++++ +.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~--~~~~~~~~~~~~~~~v~~~~~-----l~ 72 (107)
T cd04610 3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKD--PDETVEEIMSKDLVVAVPEMD-----IM 72 (107)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccC--ccccHHHhCCCCCeEECCCCC-----HH
Confidence 567899999998 9999998889999999974 8999999999998642 234688887777888999999 99
Q ss_pred HHHHHHhhc
Q 022005 295 RSLSLFSTS 303 (304)
Q Consensus 295 ~~l~~m~~~ 303 (304)
++++.|+++
T Consensus 73 ~~~~~~~~~ 81 (107)
T cd04610 73 DAARVMFRT 81 (107)
T ss_pred HHHHHHHHh
Confidence 999999753
No 68
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.40 E-value=6.1e-07 Score=71.43 Aligned_cols=79 Identities=20% Similarity=0.289 Sum_probs=67.2
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC----CccccCcccccccccceecCCCCCch
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH----PEDEVPVKSVTIRRIPRYLISLGKCS 290 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~----~~~~~~v~~~~~~~~~~v~~~~~~~~ 290 (304)
++.++++++++. ++.+.+.+++++.+||++++ ++++|+++.+|+++.. .....++.++|.+++.++.++++
T Consensus 3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~--- 77 (124)
T cd04608 3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDT--- 77 (124)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCC---
Confidence 567899999998 99999999999999999864 7999999999998532 12346899999999999999999
Q ss_pred hHHHHHHHHH
Q 022005 291 CALFRSLSLF 300 (304)
Q Consensus 291 ~~l~~~l~~m 300 (304)
+.++.+.|
T Consensus 78 --~~~v~~~~ 85 (124)
T cd04608 78 --LGKLSRIL 85 (124)
T ss_pred --HHHHHhhc
Confidence 99888755
No 69
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.39 E-value=9.7e-07 Score=67.71 Aligned_cols=81 Identities=20% Similarity=0.303 Sum_probs=65.6
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecC-CCCCchhHH
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLI-SLGKCSCAL 293 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~-~~~~~~~~l 293 (304)
++.+++.+.++. ++.+.+.+++++++||++++ |+++|+++.+|+..... .+.++.++|.+++.++.. +++ +
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~-----l 74 (110)
T cd04601 3 DPITVSPDATVA-EALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD-LDKPVSEVMTPENLLTTVEGTS-----L 74 (110)
T ss_pred CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc-CCCCHHHhcccCceEEecCCCC-----H
Confidence 456789999998 89999999999999999865 89999999999875433 345788886555666665 888 9
Q ss_pred HHHHHHHhhc
Q 022005 294 FRSLSLFSTS 303 (304)
Q Consensus 294 ~~~l~~m~~~ 303 (304)
.++++.|+++
T Consensus 75 ~~~~~~~~~~ 84 (110)
T cd04601 75 EEALELLHEH 84 (110)
T ss_pred HHHHHHHHHh
Confidence 9999999764
No 70
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.39 E-value=3.5e-07 Score=71.84 Aligned_cols=81 Identities=10% Similarity=0.162 Sum_probs=66.9
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc--------------cccCcccccccccc
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--------------DEVPVKSVTIRRIP 280 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~--------------~~~~v~~~~~~~~~ 280 (304)
++.++++++++. ++.+.+.+.+++++||+++ ++++|+++.+|+.+.... ...++.++|.+++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04637 2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI 78 (122)
T ss_pred CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCe
Confidence 567899999998 9999999999999999985 799999999998753210 12357787778889
Q ss_pred eecCCCCCchhHHHHHHHHHhhc
Q 022005 281 RYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 281 ~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
+++++++ +.++++.|+++
T Consensus 79 ~v~~~~~-----l~~~~~~~~~~ 96 (122)
T cd04637 79 TVSPDTP-----VDEASKLLLEN 96 (122)
T ss_pred eeCCCCc-----HHHHHHHHHHc
Confidence 9999999 99999999753
No 71
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.39 E-value=5.7e-07 Score=69.38 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=64.8
Q ss_pred ceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchh
Q 022005 214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSC 291 (304)
Q Consensus 214 ~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~--~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 291 (304)
.+...++++++++ ++.+.+.+++++++||+++. .++++|+++.+|+.+...+ +|.+++.+++++++
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-------~m~~~~~~v~~~~~---- 69 (105)
T cd04591 2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-------YIDPSPFTVSPRTS---- 69 (105)
T ss_pred CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-------hccCCCceECCCCc----
Confidence 3567899999998 89999999999999999862 3789999999999764422 66778889999999
Q ss_pred HHHHHHHHHhhc
Q 022005 292 ALFRSLSLFSTS 303 (304)
Q Consensus 292 ~l~~~l~~m~~~ 303 (304)
+.++++.|+++
T Consensus 70 -l~~~~~~~~~~ 80 (105)
T cd04591 70 -LEKVHQLFRKL 80 (105)
T ss_pred -HHHHHHHHHHc
Confidence 99999999753
No 72
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.38 E-value=6.2e-07 Score=70.78 Aligned_cols=83 Identities=18% Similarity=0.213 Sum_probs=64.8
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc--c-----------cCcccccccccce
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--E-----------VPVKSVTIRRIPR 281 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~--~-----------~~v~~~~~~~~~~ 281 (304)
++.++++++++. ++++.+.+++++++||++++.++++|+++.+|+++....+ . ....++|.+++.+
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (123)
T cd04627 2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS 80 (123)
T ss_pred CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence 456789999998 9999999999999999986337899999999987642110 0 1112355677889
Q ss_pred ecCCCCCchhHHHHHHHHHhhc
Q 022005 282 YLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 282 v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
++++++ +.++++.|.++
T Consensus 81 v~~~~~-----l~~a~~~m~~~ 97 (123)
T cd04627 81 INGDQP-----LIDALHLMHNE 97 (123)
T ss_pred eCCCCC-----HHHHHHHHHHc
Confidence 999999 99999999764
No 73
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.38 E-value=8.1e-07 Score=68.58 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=66.1
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC--C--ccc-cCcccccccccceecCCCCCc
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH--P--EDE-VPVKSVTIRRIPRYLISLGKC 289 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~--~--~~~-~~v~~~~~~~~~~v~~~~~~~ 289 (304)
++.+++++++++ ++.+.+.+++++++||.++ ++++|+++.+|++... . ... .++.++|.+++.+++++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~-- 76 (113)
T cd04587 2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTP-- 76 (113)
T ss_pred CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCC--
Confidence 466789999998 8999999999999999984 8999999999987421 1 111 4678887778888999999
Q ss_pred hhHHHHHHHHHhhc
Q 022005 290 SCALFRSLSLFSTS 303 (304)
Q Consensus 290 ~~~l~~~l~~m~~~ 303 (304)
+.++++.|.++
T Consensus 77 ---l~~~~~~~~~~ 87 (113)
T cd04587 77 ---VLEALHLMVQG 87 (113)
T ss_pred ---HHHHHHHHHHc
Confidence 99999999753
No 74
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.38 E-value=5.6e-07 Score=69.50 Aligned_cols=81 Identities=16% Similarity=0.143 Sum_probs=67.0
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc----cccCcccccccccceecCCCCCch
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRYLISLGKCS 290 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~~~~~~~~~v~~~~~~~~ 290 (304)
++.++++++++. ++.+.+.+.+++++||++++ ++++|+++.+|+.+.... ...++.++|.+++.+++++++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~--- 77 (114)
T cd04604 3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDAL--- 77 (114)
T ss_pred cccccCCCCcHH-HHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCc---
Confidence 455788999998 99999998899999999864 899999999998764321 124688887778888999999
Q ss_pred hHHHHHHHHHhh
Q 022005 291 CALFRSLSLFST 302 (304)
Q Consensus 291 ~~l~~~l~~m~~ 302 (304)
+.++++.|.+
T Consensus 78 --~~~~~~~~~~ 87 (114)
T cd04604 78 --AAEALELMEE 87 (114)
T ss_pred --HHHHHHHHHH
Confidence 9999999965
No 75
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.36 E-value=1.1e-06 Score=68.15 Aligned_cols=82 Identities=15% Similarity=0.103 Sum_probs=66.9
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC---ccccCcccccccccceecCCCCCchh
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---EDEVPVKSVTIRRIPRYLISLGKCSC 291 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~---~~~~~v~~~~~~~~~~v~~~~~~~~~ 291 (304)
+.+++++++++. ++.+.+.+.+++.+||++++ ++++|+++.+|+++... ....++.++|..++..++++++
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~---- 76 (113)
T cd04607 3 KQLLVSPDASIL-DALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSS---- 76 (113)
T ss_pred cceEECCCCCHH-HHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCC----
Confidence 346789999998 99999998999999999864 89999999999875321 1234688887667888999999
Q ss_pred HHHHHHHHHhhc
Q 022005 292 ALFRSLSLFSTS 303 (304)
Q Consensus 292 ~l~~~l~~m~~~ 303 (304)
+.++++.|.++
T Consensus 77 -l~~~~~~~~~~ 87 (113)
T cd04607 77 -REEILALMRER 87 (113)
T ss_pred -HHHHHHHHHHC
Confidence 99999999764
No 76
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.36 E-value=1.1e-06 Score=67.84 Aligned_cols=81 Identities=20% Similarity=0.251 Sum_probs=66.6
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC--C---ccccCcccccccccceecCCCCCc
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH--P---EDEVPVKSVTIRRIPRYLISLGKC 289 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~--~---~~~~~v~~~~~~~~~~v~~~~~~~ 289 (304)
++.++++++++. ++++.+.+++++.+||+++ ++++|+++.+|+++.. . ....++.++|.+++.+++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 76 (112)
T cd04802 2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNAS-- 76 (112)
T ss_pred CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCC--
Confidence 456789999998 8999999999999999985 4999999999998642 1 1234678887677888999999
Q ss_pred hhHHHHHHHHHhhc
Q 022005 290 SCALFRSLSLFSTS 303 (304)
Q Consensus 290 ~~~l~~~l~~m~~~ 303 (304)
+.++++.|.++
T Consensus 77 ---l~~~~~~~~~~ 87 (112)
T cd04802 77 ---LNEAAKLMAKH 87 (112)
T ss_pred ---HHHHHHHHHHc
Confidence 99999999753
No 77
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.36 E-value=8.7e-07 Score=69.45 Aligned_cols=82 Identities=15% Similarity=0.213 Sum_probs=66.7
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc----cccCccccccc--ccceecCCCCC
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIR--RIPRYLISLGK 288 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~~~~~--~~~~v~~~~~~ 288 (304)
++.++++++++. ++.+.+.+++.+.+||.+++ ++++|+++.+|+.+.... ...++.++|.+ ++.+++++++
T Consensus 2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 78 (118)
T cd04617 2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEES- 78 (118)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCc-
Confidence 456899999998 89999999999999999864 789999999998764321 13456777654 6789999999
Q ss_pred chhHHHHHHHHHhhc
Q 022005 289 CSCALFRSLSLFSTS 303 (304)
Q Consensus 289 ~~~~l~~~l~~m~~~ 303 (304)
+.++++.|.++
T Consensus 79 ----l~~~~~~~~~~ 89 (118)
T cd04617 79 ----VLEAAKKLIEH 89 (118)
T ss_pred ----HHHHHHHHHHc
Confidence 99999999764
No 78
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.35 E-value=9.3e-07 Score=67.70 Aligned_cols=80 Identities=19% Similarity=0.268 Sum_probs=66.5
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc----ccCcccccccccceecCCCCCch
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED----EVPVKSVTIRRIPRYLISLGKCS 290 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~----~~~v~~~~~~~~~~v~~~~~~~~ 290 (304)
++.++++++++. ++.+.+.+++++++||+++ ++++|+++.+|+.+..... ..++.++|.+++..++++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--- 75 (110)
T cd04609 2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAP--- 75 (110)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCc---
Confidence 456789999998 9999999999999999985 7999999999998753221 24677787777888999999
Q ss_pred hHHHHHHHHHhh
Q 022005 291 CALFRSLSLFST 302 (304)
Q Consensus 291 ~~l~~~l~~m~~ 302 (304)
+.++++.|++
T Consensus 76 --l~~~~~~~~~ 85 (110)
T cd04609 76 --IEELSELLDR 85 (110)
T ss_pred --HHHHHHHHHh
Confidence 9999998875
No 79
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.35 E-value=1.5e-06 Score=67.04 Aligned_cols=80 Identities=14% Similarity=0.241 Sum_probs=65.9
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc-cCC----ccccCcccccccccceecCCCCCc
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT-IHP----EDEVPVKSVTIRRIPRYLISLGKC 289 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~-~~~----~~~~~v~~~~~~~~~~v~~~~~~~ 289 (304)
++.++++++++. ++.+.+.+.+++.+||+++ ++++|+++.+|++. ... ....++.++|.+.+.+++++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 76 (113)
T cd04622 2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDD-- 76 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCC--
Confidence 456789999998 9999999999999999985 89999999999863 111 1123488887788889999999
Q ss_pred hhHHHHHHHHHhh
Q 022005 290 SCALFRSLSLFST 302 (304)
Q Consensus 290 ~~~l~~~l~~m~~ 302 (304)
+.++++.|++
T Consensus 77 ---~~~~~~~~~~ 86 (113)
T cd04622 77 ---VDEAARLMRE 86 (113)
T ss_pred ---HHHHHHHHHH
Confidence 9999999975
No 80
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.33 E-value=9.1e-07 Score=69.05 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=66.3
Q ss_pred eEEEEeCCCCccHHHHHHHHhcC-CceeeeeeCCCCcEEEEEEechhcccCCc-------cccCcccccccccceecCCC
Q 022005 215 ETFAIDINAKLDKELMNLILEKG-HSRVPVYYEEPTNIIGLILVKNLLTIHPE-------DEVPVKSVTIRRIPRYLISL 286 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~-~sr~PV~~~~~~~ivGiv~~kDll~~~~~-------~~~~v~~~~~~~~~~v~~~~ 286 (304)
++.++++++++. ++.+.+.+.+ ++++||+++ ++++|+++.+|+.+.... .+.++.++|.+++..+++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~ 78 (119)
T cd04598 2 PAPTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADT 78 (119)
T ss_pred CcCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCC
Confidence 345688999998 9999998877 899999986 899999999998754221 23568888777888999999
Q ss_pred CCchhHHHHHHHHHhhc
Q 022005 287 GKCSCALFRSLSLFSTS 303 (304)
Q Consensus 287 ~~~~~~l~~~l~~m~~~ 303 (304)
+ +.++++.|.++
T Consensus 79 ~-----~~~~~~~~~~~ 90 (119)
T cd04598 79 P-----LEEVSRLATGR 90 (119)
T ss_pred C-----HHHHHHHHHcC
Confidence 9 99999998653
No 81
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.33 E-value=8.5e-07 Score=72.29 Aligned_cols=81 Identities=11% Similarity=0.247 Sum_probs=66.7
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc----------------------------
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---------------------------- 266 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~---------------------------- 266 (304)
+++++++++++. ++.+.+.+.+++.+||+++ ++++|+++.+|+++....
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (143)
T cd04634 2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE 78 (143)
T ss_pred CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence 467899999998 9999999999999999985 799999999998753210
Q ss_pred --------cccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005 267 --------DEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 267 --------~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
...++.++|.+++..++++++ +.++++.|+++
T Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~-----l~~a~~~~~~~ 118 (143)
T cd04634 79 TKRALTDAGKMKVRDIMTKKVITISPDAS-----IEDAAELMVRH 118 (143)
T ss_pred HHHHHHHHhcCCHHHHcCCCCeEECCCCc-----HHHHHHHHHHc
Confidence 123566777788899999999 99999999753
No 82
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.33 E-value=1.3e-06 Score=68.36 Aligned_cols=80 Identities=16% Similarity=0.285 Sum_probs=66.5
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc--------------cccCcccccccccc
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--------------DEVPVKSVTIRRIP 280 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~--------------~~~~v~~~~~~~~~ 280 (304)
++.++++++++. ++.+.+.+.+++++||+++ |+++|+++.+|+.+.... ...++.++|.+++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (121)
T cd04633 2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVI 78 (121)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCce
Confidence 456789999998 9999999999999999985 899999999998764221 13467777778889
Q ss_pred eecCCCCCchhHHHHHHHHHhh
Q 022005 281 RYLISLGKCSCALFRSLSLFST 302 (304)
Q Consensus 281 ~v~~~~~~~~~~l~~~l~~m~~ 302 (304)
+++++++ +.++++.|++
T Consensus 79 ~v~~~~~-----l~~~~~~~~~ 95 (121)
T cd04633 79 TIEPDTS-----VSDVASLMLE 95 (121)
T ss_pred EECCCCc-----HHHHHHHHHH
Confidence 9999999 9999999965
No 83
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.28 E-value=1.3e-06 Score=69.26 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=62.2
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC----------CccccCccccccccccee--
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH----------PEDEVPVKSVTIRRIPRY-- 282 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~----------~~~~~~v~~~~~~~~~~v-- 282 (304)
++.+++.++++. ++++.+.++++..+||.+++ |+++|+++.+|+.+.. .....++.++|.++...+
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~ 79 (126)
T cd04640 2 KPIVIPADTSID-EALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKAL 79 (126)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccc
Confidence 356789999998 99999998999999999864 8999999999987521 112346788864444332
Q ss_pred ----cCCCCCchhHHHHHHHHHhhc
Q 022005 283 ----LISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 283 ----~~~~~~~~~~l~~~l~~m~~~ 303 (304)
+++++ +.++++.|.++
T Consensus 80 ~~~~~~~~~-----l~~~l~~m~~~ 99 (126)
T cd04640 80 DLEELENAS-----VGDVVETLKAS 99 (126)
T ss_pred cHHHhccCc-----HHHHHHHHHHC
Confidence 25677 99999999754
No 84
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.28 E-value=3e-06 Score=64.28 Aligned_cols=69 Identities=9% Similarity=0.102 Sum_probs=58.9
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHH
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALF 294 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~ 294 (304)
++.++++++++. ++++.+.+.+++.+||++++ ++++|+++.+|+.+... +.+++++.+ +.
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~-------------~~~v~~~~~-----l~ 61 (96)
T cd04614 2 NVPTVWEETPLP-VAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKSE-------------VVTATKRTT-----VS 61 (96)
T ss_pred CccEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCCC-------------cEEecCCCC-----HH
Confidence 466899999998 99999999999999999854 89999999999976321 667888998 99
Q ss_pred HHHHHHhhc
Q 022005 295 RSLSLFSTS 303 (304)
Q Consensus 295 ~~l~~m~~~ 303 (304)
++++.|+++
T Consensus 62 ~a~~~m~~~ 70 (96)
T cd04614 62 ECAQKMKRN 70 (96)
T ss_pred HHHHHHHHh
Confidence 999999764
No 85
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.27 E-value=1.9e-06 Score=65.46 Aligned_cols=82 Identities=22% Similarity=0.356 Sum_probs=67.0
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccc----cCcccccccccceecCCCCCch
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE----VPVKSVTIRRIPRYLISLGKCS 290 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~----~~v~~~~~~~~~~v~~~~~~~~ 290 (304)
++.+++.++++. ++.+.+.+++++++||++++ ++++|+++.+|+........ ..+.++|..++.+++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 76 (113)
T cd02205 2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTS--- 76 (113)
T ss_pred CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcC---
Confidence 456789999998 99999999999999999865 89999999999987543221 1255677788899999999
Q ss_pred hHHHHHHHHHhhc
Q 022005 291 CALFRSLSLFSTS 303 (304)
Q Consensus 291 ~~l~~~l~~m~~~ 303 (304)
+.++++.|+++
T Consensus 77 --~~~~~~~~~~~ 87 (113)
T cd02205 77 --LEEAAELMLEH 87 (113)
T ss_pred --HHHHHHHHHHc
Confidence 99999999753
No 86
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.24 E-value=2e-06 Score=83.85 Aligned_cols=90 Identities=14% Similarity=0.212 Sum_probs=77.0
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccce
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~ 281 (304)
...+++++|++ +++++++++++. ++.+.+.+++++.+||.++ ++++|+|+.+|+..... ..++.++|.+++.+
T Consensus 86 ~~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~~~--~~~V~dIMt~~lit 158 (475)
T TIGR01303 86 AFVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGVDR--FTQVRDIMSTDLVT 158 (475)
T ss_pred hhcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcCCC--CCCHHHHccCCceE
Confidence 35578899975 678999999998 9999999999999999874 68999999999965432 35799999999999
Q ss_pred ecCCCCCchhHHHHHHHHHhhc
Q 022005 282 YLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 282 v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
++++++ +.++++.|.++
T Consensus 159 v~~~~s-----L~eAl~lM~~~ 175 (475)
T TIGR01303 159 APADTE-----PRKAFDLLEHA 175 (475)
T ss_pred eCCCCc-----HHHHHHHHHHc
Confidence 999999 99999999764
No 87
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.22 E-value=3e-06 Score=65.82 Aligned_cols=82 Identities=15% Similarity=0.291 Sum_probs=64.9
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEechhcccCCccccCcccccccccceecC--CCCCch
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLI--SLGKCS 290 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~--~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~--~~~~~~ 290 (304)
++.++++++++. ++.+.+.+.+++++||+++. .++++|+++.+|++.... ...+++++|.+++..+.. +++
T Consensus 3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~--- 77 (114)
T cd04602 3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-SETPLSEVMTPREVLVVAPTGIT--- 77 (114)
T ss_pred CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-cCCCHHHhcCCCceEEECCCCCC---
Confidence 556789999998 99999998999999999852 489999999999875332 234588887666666654 888
Q ss_pred hHHHHHHHHHhhc
Q 022005 291 CALFRSLSLFSTS 303 (304)
Q Consensus 291 ~~l~~~l~~m~~~ 303 (304)
+.++++.|+++
T Consensus 78 --l~~~l~~~~~~ 88 (114)
T cd04602 78 --LEEANEILRES 88 (114)
T ss_pred --HHHHHHHHHhc
Confidence 99999999764
No 88
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.21 E-value=2.6e-06 Score=65.55 Aligned_cols=75 Identities=15% Similarity=0.216 Sum_probs=61.6
Q ss_pred EeCCCCccHHHHHHHHhcCC-----ceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHH
Q 022005 219 IDINAKLDKELMNLILEKGH-----SRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCAL 293 (304)
Q Consensus 219 l~~~~t~~~e~~~~~~~~~~-----sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l 293 (304)
+++++++. ++++.+.++++ ..+||++++ ++++|+++.+|+++.. .+.++.++|.+++..++++++ +
T Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~i~~~~~-----~ 72 (109)
T cd04606 2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLAD--PDTPVSDIMDTDVISVSADDD-----Q 72 (109)
T ss_pred ccccCcHH-HHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcCC--CcchHHHHhCCCCeEEcCCCC-----H
Confidence 57889998 89999988773 678999754 8999999999998643 234688886667888999999 9
Q ss_pred HHHHHHHhh
Q 022005 294 FRSLSLFST 302 (304)
Q Consensus 294 ~~~l~~m~~ 302 (304)
.++++.|++
T Consensus 73 ~~~~~~~~~ 81 (109)
T cd04606 73 EEVARLFEK 81 (109)
T ss_pred HHHHHHHHH
Confidence 999999875
No 89
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.18 E-value=3.5e-06 Score=64.93 Aligned_cols=81 Identities=11% Similarity=0.134 Sum_probs=65.4
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc-----cccCcccccccccceecCCCCCc
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-----DEVPVKSVTIRRIPRYLISLGKC 289 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~-----~~~~v~~~~~~~~~~v~~~~~~~ 289 (304)
++.++++++++. ++.+.+.+++++.+||.+ + ++++|+++.+|+++.... ...++.++|.+++..++++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~-- 76 (112)
T cd04625 2 TIYTVAPETLLS-EAVATMAEQDLGSLVVME-R-GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDS-- 76 (112)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCC--
Confidence 566799999998 899999888888887765 4 799999999999864321 134688887677788999999
Q ss_pred hhHHHHHHHHHhhc
Q 022005 290 SCALFRSLSLFSTS 303 (304)
Q Consensus 290 ~~~l~~~l~~m~~~ 303 (304)
+.++++.|.++
T Consensus 77 ---l~~a~~~m~~~ 87 (112)
T cd04625 77 ---IDEVRRLMVER 87 (112)
T ss_pred ---HHHHHHHHHHc
Confidence 99999999754
No 90
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.17 E-value=3.4e-06 Score=65.43 Aligned_cols=81 Identities=17% Similarity=0.375 Sum_probs=63.1
Q ss_pred eEEEEeCCCCccHHHHHHHHhcC-CceeeeeeCCCCcEEEEEEechhcccCCc----cccCcccccccccceecCC--CC
Q 022005 215 ETFAIDINAKLDKELMNLILEKG-HSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRYLIS--LG 287 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~-~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~~~~~~~~~v~~~--~~ 287 (304)
++.+++.+.++. ++.+.+.+++ ++.+||.+ + ++++|+++.+|+++...+ ...++.++|.+++.+++++ .+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~ 78 (115)
T cd04620 2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVE-K-GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQD 78 (115)
T ss_pred CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcC-C-CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccC
Confidence 345789999998 8999998888 67778776 3 799999999999864321 1346788877777888876 56
Q ss_pred CchhHHHHHHHHHhhc
Q 022005 288 KCSCALFRSLSLFSTS 303 (304)
Q Consensus 288 ~~~~~l~~~l~~m~~~ 303 (304)
+.++++.|.++
T Consensus 79 -----l~~a~~~~~~~ 89 (115)
T cd04620 79 -----IFTALSLFRQH 89 (115)
T ss_pred -----HHHHHHHHHHh
Confidence 99999999763
No 91
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.13 E-value=3.3e-06 Score=65.42 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=48.9
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
.+++++|.+ ++.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus 56 ~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR 110 (111)
T ss_pred cChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence 468999964 567899999998 99999999999999999865 79999999999875
No 92
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.11 E-value=1.3e-05 Score=77.38 Aligned_cols=106 Identities=23% Similarity=0.296 Sum_probs=90.0
Q ss_pred CChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCC-----ceeeeeeCCCCcEEEEEEechhc
Q 022005 187 LTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH-----SRVPVYYEEPTNIIGLILVKNLL 261 (304)
Q Consensus 187 l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~-----sr~PV~~~~~~~ivGiv~~kDll 261 (304)
++++|++.++..+...+-++..+|+. +.++++.+.|++ ++++.+++.+. ..+.|+|++ ++++|+++.++++
T Consensus 115 l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~Ll 190 (451)
T COG2239 115 LDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDLL 190 (451)
T ss_pred CCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHH-HHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHHh
Confidence 67899999999999999999999995 899999999999 99999994432 344567764 7899999999998
Q ss_pred ccCCccccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005 262 TIHPEDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 262 ~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
...+ +..++++|.+.+.+|+.++. ..++.+.|+++
T Consensus 191 ~a~~--~~~i~~im~~~~~~V~~~~d-----qeevA~~~~~y 225 (451)
T COG2239 191 TAEP--DELLKDLMEDDVVSVLADDD-----QEEVARLFEKY 225 (451)
T ss_pred cCCc--HhHHHHHhcccceeecccCC-----HHHHHHHHHHh
Confidence 6544 45789998888899999999 88888888764
No 93
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.09 E-value=4.9e-06 Score=64.48 Aligned_cols=58 Identities=29% Similarity=0.450 Sum_probs=50.6
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
+.++.++|.|..++.++++++++. ++++.+.+++.+++||++++ ++++|+++.+|+++
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vv~~~-~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQGLDELAVVEDS-GQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccccceEECCCCcHH-HHHHHHHHCCCCeeEEEcCC-CcEEEEEeccceec
Confidence 457899998755566899999998 99999999999999999864 79999999999874
No 94
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.09 E-value=5.3e-06 Score=64.98 Aligned_cols=55 Identities=22% Similarity=0.326 Sum_probs=48.8
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
.+|+|+|.+ ++.++++++++. ++++.+.++++..+||++++ ++++|+++.+|+.+
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence 679999985 677899999998 99999999999999999864 79999999999853
No 95
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.06 E-value=1.3e-05 Score=62.11 Aligned_cols=86 Identities=23% Similarity=0.375 Sum_probs=71.8
Q ss_pred cccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc--cc-Ccccccccccceec
Q 022005 207 SDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--EV-PVKSVTIRRIPRYL 283 (304)
Q Consensus 207 ~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~--~~-~v~~~~~~~~~~v~ 283 (304)
.++|. .+++++.++.++. ++...+.+++++++||.++ ++++|+++.+|+.+..... .. ++.++|.+++.++.
T Consensus 2 ~~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~ 76 (117)
T COG0517 2 KDIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVD 76 (117)
T ss_pred ccccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEEC
Confidence 34554 5788999999998 9999999999999999974 3799999999999865432 12 58888777899999
Q ss_pred CCCCCchhHHHHHHHHHhh
Q 022005 284 ISLGKCSCALFRSLSLFST 302 (304)
Q Consensus 284 ~~~~~~~~~l~~~l~~m~~ 302 (304)
++.+ +.++++.|.+
T Consensus 77 ~~~~-----~~~~~~~m~~ 90 (117)
T COG0517 77 PDTP-----LEEALELMVE 90 (117)
T ss_pred CCCC-----HHHHHHHHHH
Confidence 9999 9999999876
No 96
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.05 E-value=7e-06 Score=64.24 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=51.0
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCC--CcEEEEEEechhcc
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP--TNIIGLILVKNLLT 262 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~--~~ivGiv~~kDll~ 262 (304)
.+.+++++|+.-.++.++++++++. ++++.|.+++++++||++++. ++++|+|+.+|+++
T Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 56 QKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred cCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 4567889997324677999999998 999999999999999998653 58999999999875
No 97
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.03 E-value=8.3e-06 Score=62.85 Aligned_cols=59 Identities=24% Similarity=0.376 Sum_probs=50.6
Q ss_pred ccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 200 ~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
+.+..++.++|.+ ++.++++++++. ++++.+.+++.+++||++++ ++++|+++.+|+++
T Consensus 55 ~~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~ 113 (114)
T cd04604 55 DILTLPVADVMTR--NPKTIDPDALAA-EALELMEENKITALPVVDDN-GRPVGVLHIHDLLR 113 (114)
T ss_pred ccccCCHHHhhcc--CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence 3444579999976 556899999998 99999999999999999864 89999999999875
No 98
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.02 E-value=7.4e-06 Score=63.70 Aligned_cols=57 Identities=16% Similarity=0.323 Sum_probs=49.8
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
.+.+++++|.. ++.++++++++. ++++.+.+++..++||++++ ++++|+++.+|+++
T Consensus 57 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~ 113 (114)
T cd04619 57 CTAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK 113 (114)
T ss_pred ccCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence 34578999964 677899999998 99999999999999999864 79999999999874
No 99
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.89 E-value=1.3e-05 Score=78.71 Aligned_cols=61 Identities=18% Similarity=0.302 Sum_probs=54.9
Q ss_pred cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (304)
Q Consensus 201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (304)
..+.+|+|+|+|..+++++++++++. ++++.|.+++.+++||+|++ ++++|+|+.+|+++.
T Consensus 158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDSH 218 (502)
T ss_pred CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHhc
Confidence 44678999999877888999999998 99999999999999999864 799999999999875
No 100
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.88 E-value=1.6e-05 Score=61.87 Aligned_cols=58 Identities=28% Similarity=0.492 Sum_probs=50.8
Q ss_pred cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
..+.++.++|.+ ++.++++++++. ++++.+.+.+++++||++++ |+++|+++.+|+++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvvt~~di~~ 121 (122)
T cd04585 64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDDQ-GRLVGIITESDLFR 121 (122)
T ss_pred hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECCC-CcEEEEEEHHHhhh
Confidence 345679999975 677899999998 99999999999999999864 79999999999875
No 101
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.88 E-value=8.5e-06 Score=79.31 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=65.2
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccce
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~ 281 (304)
++.+++++|+| +++++++++++. ++.+.+.++++..+||+|++ |+++|+|+.+|+++...++. -+++|......
T Consensus 193 ~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~~--~ed~~~~~gv~ 266 (449)
T TIGR00400 193 PEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSEA--TEDFYMIAAVK 266 (449)
T ss_pred CCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhhh--HHHHHHhcCCC
Confidence 45689999986 677899999998 99999999999999999865 89999999999998654331 24554333333
Q ss_pred ecCCCCCchhHHHHHHHHHh
Q 022005 282 YLISLGKCSCALFRSLSLFS 301 (304)
Q Consensus 282 v~~~~~~~~~~l~~~l~~m~ 301 (304)
..++.. +.+.+.+|.
T Consensus 267 ~~~~~~-----l~~~~~~~~ 281 (449)
T TIGR00400 267 PLDDSY-----FDTSILVMA 281 (449)
T ss_pred CCcchh-----hhchHHHHH
Confidence 323344 555555443
No 102
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.86 E-value=2.2e-05 Score=60.68 Aligned_cols=56 Identities=21% Similarity=0.493 Sum_probs=48.7
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
+.+++++|.+ .+.++++++++. ++++.+.+++.+++||++++ |+++|+++.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~ 112 (113)
T cd04607 57 DDPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDEE-GRVVGLATLDDLLS 112 (113)
T ss_pred CCCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhcc
Confidence 3468899965 566899999998 99999999999999999864 89999999999864
No 103
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.85 E-value=1.3e-05 Score=63.49 Aligned_cols=60 Identities=27% Similarity=0.385 Sum_probs=47.6
Q ss_pred ccccccccccccceEEEEe----CCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 202 TEKTASDAMTPIAETFAID----INAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~----~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
.+.+++++|.+...+..++ +++++. ++++.|.+++.+++||++++.++++|+|+..|+++
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 3567999997533333443 678998 89999999999999999864368999999999875
No 104
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.85 E-value=2.6e-05 Score=59.41 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=41.9
Q ss_pred EEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 216 v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
+.++++++++. ++++.|.+++..++||++++.|+++|+++.+|+++
T Consensus 52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 67899999998 99999999999999999864479999999999874
No 105
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.82 E-value=2.9e-05 Score=59.53 Aligned_cols=55 Identities=20% Similarity=0.448 Sum_probs=48.8
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
+.+++++|.+ ++.++++++++. ++++.+.+.+++++||+++ ++++|+++.+|+++
T Consensus 58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence 4578999965 677899999998 9999999999999999985 79999999999875
No 106
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.81 E-value=2.9e-05 Score=59.09 Aligned_cols=56 Identities=18% Similarity=0.400 Sum_probs=48.7
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
+.+++++|.+ .+.++++++++. ++++.+.+++.+++||++++ |+++|+++.+|+++
T Consensus 51 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSK--DLVVAVPEMDIM-DAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCC--CCeEECCCCCHH-HHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence 3568999975 466799999998 99999999999999999865 79999999999875
No 107
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.78 E-value=3.2e-05 Score=60.60 Aligned_cols=58 Identities=26% Similarity=0.535 Sum_probs=50.7
Q ss_pred cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
....+++++|.+ ++.++++++++. ++++.+.+.+.+++||++++ |+++|+++.+|+++
T Consensus 66 ~~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvit~~di~~ 123 (124)
T cd04600 66 DKPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDED-RRLVGIVTQTDLIA 123 (124)
T ss_pred cccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcCC-CCEEEEEEhHHhhc
Confidence 345679999965 677899999998 99999999999999999864 89999999999875
No 108
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.77 E-value=3.6e-05 Score=59.63 Aligned_cols=56 Identities=16% Similarity=0.297 Sum_probs=49.2
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
.+.+++++|.. ++.++++++++. ++++.+.+++..++||+++ ++++|+++.+|+++
T Consensus 58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~ 113 (114)
T cd04630 58 DRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDIFL 113 (114)
T ss_pred CccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence 34678999953 677999999998 9999999999999999985 79999999999875
No 109
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.77 E-value=4.4e-05 Score=58.07 Aligned_cols=54 Identities=13% Similarity=0.302 Sum_probs=47.2
Q ss_pred cccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 205 ~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
++.++|.+ ...++++++++. ++++.+.+++++.+||++++ ++++|+++.+|+++
T Consensus 52 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEP--FKVTVSVDDDLR-IVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhccc--CCEEECCCCCHH-HHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 57899976 456789999998 99999999999999999864 79999999999874
No 110
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.76 E-value=3.5e-05 Score=59.11 Aligned_cols=57 Identities=16% Similarity=0.400 Sum_probs=49.9
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
.+.+++++|.+ ++.++++++++. ++.+.+.+++...+||++++ |+++|+++.+|+++
T Consensus 51 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~ 107 (108)
T cd04596 51 PDTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK 107 (108)
T ss_pred ccccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence 35679999975 577899999998 99999999999999999864 79999999999874
No 111
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.75 E-value=4.5e-05 Score=59.01 Aligned_cols=56 Identities=14% Similarity=0.306 Sum_probs=47.7
Q ss_pred cccccccccccceEEEEeCC--CCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 203 EKTASDAMTPIAETFAIDIN--AKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~~--~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
+.++.++|.+ ++.+++++ +++. ++++.+.+++..++||++++ |+++|+++.+|+++
T Consensus 57 ~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence 4678899965 56678876 6887 89999999999999999865 89999999999875
No 112
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.73 E-value=4.3e-05 Score=61.69 Aligned_cols=56 Identities=29% Similarity=0.399 Sum_probs=49.3
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
.+.+++++|++ ++.++++++++. ++++.+.+.++.++||+++ |+++|+++.+|+++
T Consensus 79 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence 45689999975 566899999998 9999999999999999975 79999999999875
No 113
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.73 E-value=4.2e-05 Score=58.79 Aligned_cols=55 Identities=22% Similarity=0.421 Sum_probs=48.2
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
+.+++++|.+ ++.++++++++. ++++.|.+++..++||.++ ++++|+++.+|+++
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLDG--GTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHhhc
Confidence 4578999964 567899999998 9999999999999999973 79999999999875
No 114
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.73 E-value=4.9e-05 Score=58.44 Aligned_cols=56 Identities=23% Similarity=0.419 Sum_probs=48.6
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
..+++++|.+ ++.++++++++. ++++.+.+.+.+++||++++ ++++|+++.+|+++
T Consensus 57 ~~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 112 (113)
T cd04622 57 TTTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR 112 (113)
T ss_pred cCCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 3458999975 667899999998 99999999999999999864 79999999999875
No 115
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.72 E-value=5.2e-05 Score=59.62 Aligned_cols=52 Identities=25% Similarity=0.316 Sum_probs=45.1
Q ss_pred ccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhc
Q 022005 206 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLL 261 (304)
Q Consensus 206 V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll 261 (304)
+.++|.+ ++.++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|+.
T Consensus 70 ~~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGTS--DVISINGDQPLI-DALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR 121 (123)
T ss_pred hcccCcC--CceEeCCCCCHH-HHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence 3457754 677899999998 99999999999999999865 7899999999974
No 116
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.71 E-value=7e-05 Score=74.69 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=52.3
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (304)
...+|+++|+. .++.+++++++++ ++.+.+.+++++++||++++ |+++|+++.+|+++.
T Consensus 244 ~~~~V~~iM~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~dl~~~ 302 (546)
T PRK14869 244 QSIPVSYIMTT-EDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDED-GKVVGVISRYHLLSP 302 (546)
T ss_pred cCCCHHHhccC-CCcEEECCCCcHH-HHHHHHHhcCCCceEEEcCC-CCEEEEEEHHHhhcc
Confidence 35789999982 4788999999998 99999999999999999865 899999999999863
No 117
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.70 E-value=5.1e-05 Score=58.43 Aligned_cols=57 Identities=19% Similarity=0.365 Sum_probs=49.2
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
.+.++.++|.+ ++.+++.++++. ++++.+.+++.+++||++++ |+++|+++.+|+++
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~~ 112 (113)
T cd04615 56 KDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDDK-GKVGGIVTEDDILR 112 (113)
T ss_pred cCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhhc
Confidence 34578899964 677899999998 99999999999999999864 79999999999864
No 118
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.69 E-value=6.5e-05 Score=57.37 Aligned_cols=56 Identities=32% Similarity=0.556 Sum_probs=46.7
Q ss_pred cccccccccccceEEEEeC-CCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 203 EKTASDAMTPIAETFAIDI-NAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~-~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
+.++.++|.+ ++..+.+ ++++. ++++.+.+.+++++||++++ ++++|+++.+|+++
T Consensus 53 ~~~v~~~~~~--~~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTP--ENLLTTVEGTSLE-EALELLHEHKIEKLPVVDDE-GKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhccc--CceEEecCCCCHH-HHHHHHHHhCCCeeeEEcCC-CCEEEEEEhhhhhc
Confidence 4578999964 3344566 99998 99999999999999999864 79999999999875
No 119
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.69 E-value=4.9e-05 Score=58.47 Aligned_cols=55 Identities=20% Similarity=0.359 Sum_probs=48.4
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
.++.++|.+ +..++++++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus 58 ~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhcc
Confidence 578999964 566899999998 99999999999999999865 89999999999874
No 120
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.68 E-value=4.9e-05 Score=58.36 Aligned_cols=57 Identities=21% Similarity=0.386 Sum_probs=49.7
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
..++.++|.+ ++.++++++++. ++.+.+.+.+++++||++++.++++|+++.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTK--PPVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccC--CCcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 4689999976 567899999998 99999999999999999852379999999999874
No 121
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.68 E-value=5e-05 Score=59.58 Aligned_cols=57 Identities=21% Similarity=0.433 Sum_probs=49.8
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
.+.+++++|.+ ++.++++++++. ++.+.+.+.+.+++||.+++ ++++|+|+.+|+++
T Consensus 68 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~ 124 (125)
T cd04631 68 INEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLK 124 (125)
T ss_pred hhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhc
Confidence 44578899965 678999999998 89999999999999999864 79999999999875
No 122
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.68 E-value=5.6e-05 Score=60.30 Aligned_cols=56 Identities=18% Similarity=0.439 Sum_probs=49.0
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
...++.++|.+ ++..+++++++. ++.+.+.+.+++++||+++ ++++|+++.+|+++
T Consensus 76 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~ 131 (132)
T cd04636 76 LGKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR 131 (132)
T ss_pred cCCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence 34478999975 677899999998 9999999999999999985 89999999999875
No 123
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.68 E-value=4.5e-05 Score=71.02 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=51.7
Q ss_pred cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (304)
Q Consensus 201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (304)
+.+.+|+|+|++ ++.++++++++. ++++.|.+++..++||+++ ++++|+|+.+|+++.
T Consensus 266 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~ 323 (326)
T PRK10892 266 LRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA 323 (326)
T ss_pred cccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence 456789999986 678999999998 9999999999999999973 689999999999864
No 124
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.67 E-value=4.5e-05 Score=59.50 Aligned_cols=57 Identities=21% Similarity=0.448 Sum_probs=49.8
Q ss_pred cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
+.+.++.++|.+ +..++++++++. ++++.+.+.+.+++||+++ |+++|+++.+|+++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~ 120 (121)
T cd04633 64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR 120 (121)
T ss_pred hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence 345678899964 677899999998 9999999999999999985 79999999999875
No 125
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.67 E-value=4.3e-05 Score=75.21 Aligned_cols=60 Identities=15% Similarity=0.305 Sum_probs=54.0
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (304)
.+.+|+++|++..+++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|+++.
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~ 220 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRV 220 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHH
Confidence 4678999999866688999999998 99999999999999999864 799999999999864
No 126
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=97.67 E-value=4.3e-05 Score=74.19 Aligned_cols=94 Identities=13% Similarity=0.152 Sum_probs=79.2
Q ss_pred cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC----CccccCcccccc
Q 022005 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH----PEDEVPVKSVTI 276 (304)
Q Consensus 201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~----~~~~~~v~~~~~ 276 (304)
+--.+|.++|+. +.+++++++++. ++.+.|.+.|.|..-|++++ +...|||+.+|+.... .....+|+++|.
T Consensus 146 ~~~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT 221 (610)
T COG2905 146 FILTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADGRSKTQKVSEVMT 221 (610)
T ss_pred HHHHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcCCCcccchhhhhc
Confidence 334568899985 677899999998 99999999999988888765 8999999999997632 223568999999
Q ss_pred cccceecCCCCCchhHHHHHHHHHhhc
Q 022005 277 RRIPRYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 277 ~~~~~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
.|++.|..+.. +.+++-.|.++
T Consensus 222 ~p~~svd~~~~-----~feAml~m~r~ 243 (610)
T COG2905 222 SPVISVDRGDF-----LFEAMLMMLRN 243 (610)
T ss_pred cCceeecCcch-----HHHHHHHHHHh
Confidence 99999999999 99999998653
No 127
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.66 E-value=5.8e-05 Score=58.76 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=50.3
Q ss_pred cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
..+.+++++|.+ ++.+++.+++++ ++++.+.+++++.+||+++ ++++|+++.+|+++
T Consensus 64 ~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~ 120 (121)
T cd04584 64 LLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETDLLR 120 (121)
T ss_pred hcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence 456779999975 677899999998 9999999999999999975 79999999999875
No 128
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.65 E-value=6.6e-05 Score=57.63 Aligned_cols=57 Identities=21% Similarity=0.431 Sum_probs=49.7
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (304)
+.+++++|.+ ++.++++++++. ++++.+.+++...+||++++ ++++|+++..|+++.
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhh
Confidence 4579999965 577899999998 99999999999999999865 899999999999753
No 129
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.65 E-value=7.6e-05 Score=57.78 Aligned_cols=56 Identities=20% Similarity=0.441 Sum_probs=48.1
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC-CCcEEEEEEechhcc
Q 022005 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE-PTNIIGLILVKNLLT 262 (304)
Q Consensus 204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~-~~~ivGiv~~kDll~ 262 (304)
.+++++|.+ ++.++++++++. ++++.+.+++..++||++++ .++++|+++.+|+++
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 58 SAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred ccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 347888864 677899999998 99999999999999999864 268999999999875
No 130
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.64 E-value=7.3e-05 Score=58.39 Aligned_cols=58 Identities=16% Similarity=0.370 Sum_probs=50.0
Q ss_pred cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
..+.++.++|. .++.++++++++. ++++.+.+.+..++||++++ ++++|+++.+|++.
T Consensus 64 ~~~~~v~~~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~ 121 (122)
T cd04803 64 ERDVPVAEVMK--TDVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR 121 (122)
T ss_pred ccCcCHHHhhC--CCCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence 35667889995 3677899999998 99999999999999999864 79999999999875
No 131
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.64 E-value=6.9e-05 Score=58.09 Aligned_cols=57 Identities=18% Similarity=0.339 Sum_probs=46.7
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
..++++|.+....+..++++++. ++++.+.+++..++||++++ ++++|+++.+|+++
T Consensus 57 ~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVNDD-GELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence 45889997644443334499998 99999999999999999864 79999999999864
No 132
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.63 E-value=5.6e-05 Score=60.51 Aligned_cols=57 Identities=25% Similarity=0.393 Sum_probs=50.2
Q ss_pred cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
....+++++|.+ ++.++++++++. ++++.+.+.+.+++||++ + |+++|+++.+|+++
T Consensus 78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd-~-g~~~Gvit~~di~~ 134 (135)
T cd04586 78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR-G-GRLVGIVSRADLLR 134 (135)
T ss_pred hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec-C-CEEEEEEEhHhhhc
Confidence 355689999965 677899999998 999999999999999998 4 89999999999875
No 133
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.61 E-value=7.1e-05 Score=73.62 Aligned_cols=60 Identities=17% Similarity=0.302 Sum_probs=54.4
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (304)
.+.+|+|+|+|+.+++++++++++. |+.+.+.+++...+||++++ ++++|+|+.+|+++.
T Consensus 157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~ 216 (495)
T PTZ00314 157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKN 216 (495)
T ss_pred CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhc
Confidence 3568999999877899999999998 99999999999999999865 899999999999864
No 134
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.61 E-value=8.7e-05 Score=56.99 Aligned_cols=55 Identities=25% Similarity=0.529 Sum_probs=48.3
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
+.++.++|.+ ++.++++++++. ++++.+.+++..++||+++ ++++|+++.+|++.
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~ 110 (111)
T cd04626 56 EKKVFNIVSQ--DVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD 110 (111)
T ss_pred cCcHHHHhcC--CcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence 4578899964 677899999998 9999999999999999985 79999999999864
No 135
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.61 E-value=0.00015 Score=55.98 Aligned_cols=53 Identities=25% Similarity=0.543 Sum_probs=47.4
Q ss_pred cccccccccceEEEEeCCCCccHHHHHHHHh-cCCceeeeeeCCCC-cEEEEEEechhc
Q 022005 205 TASDAMTPIAETFAIDINAKLDKELMNLILE-KGHSRVPVYYEEPT-NIIGLILVKNLL 261 (304)
Q Consensus 205 ~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~-~~~sr~PV~~~~~~-~ivGiv~~kDll 261 (304)
++.++|++ ++++++++.++. ++.+.+.+ ++++++||++++ + +++|+++.+|++
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~-~~~lvGivt~~di~ 117 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDD-GGKLVGIITLSDIL 117 (117)
T ss_pred cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECC-CCeEEEEEEHHHcC
Confidence 69999985 778899999998 99999999 799999999864 4 999999999974
No 136
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.60 E-value=9.2e-05 Score=56.41 Aligned_cols=55 Identities=31% Similarity=0.590 Sum_probs=48.1
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
.++.++|.+ ++.++++++++. ++.+.+.+++.+++||++++ |+++|+++.+|+++
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence 468899975 667899999998 99999999999999999864 79999999999874
No 137
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.60 E-value=8.9e-05 Score=56.93 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=48.9
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
.+.+++++|.+ ++..+++++++. ++++.+.+++..++||+++ ++++|+++.+|+++
T Consensus 55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence 34578899965 677899999998 9999999999999999974 79999999999875
No 138
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.60 E-value=0.0001 Score=68.49 Aligned_cols=57 Identities=14% Similarity=0.286 Sum_probs=50.7
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (304)
+.+|+|+|++ ++.++++++++. ++++.|.+++..++||++++ |+++|+|+.+|++++
T Consensus 262 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~~ 318 (321)
T PRK11543 262 TTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQA 318 (321)
T ss_pred CCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHhc
Confidence 4569999986 677899999998 99999999999999999865 799999999999864
No 139
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.60 E-value=5.5e-05 Score=66.80 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=52.5
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 264 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~ 264 (304)
+.+|+|+|.+ ++++++.|+.+- |+++.|..++..|+-|.|. .|+.+|+++..|++...
T Consensus 233 ~~kV~~~M~k--~vitI~eDe~i~-dAir~M~~~nVGRLlV~ds-~gkpvGiITrTDIL~~i 290 (294)
T COG2524 233 DAKVSDYMRK--NVITINEDEDIY-DAIRLMNKNNVGRLLVTDS-NGKPVGIITRTDILTRI 290 (294)
T ss_pred cccHHHHhcc--CCceEcCchhHH-HHHHHHHhcCcceEEEEcc-CCcEEEEEehHHHHHHh
Confidence 4689999975 999999999999 9999999999999999985 48999999999998754
No 140
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.59 E-value=0.0001 Score=56.30 Aligned_cols=57 Identities=18% Similarity=0.357 Sum_probs=49.2
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
.+.++.++|.+ ++.++++++++. ++++.+.+.+.+.+||++++ |+++|+++.+|+++
T Consensus 54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence 35678899965 677899999998 89999999999999999864 79999999999874
No 141
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.58 E-value=8.9e-05 Score=57.89 Aligned_cols=57 Identities=19% Similarity=0.440 Sum_probs=49.5
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
...++.++|.+ ++.+++.++++. ++.+.+.+++.+++||++++ |+++|+++.+|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMST--PVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence 45678899964 677899999998 99999999999999999865 89999999999875
No 142
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.58 E-value=0.00011 Score=56.51 Aligned_cols=56 Identities=25% Similarity=0.501 Sum_probs=48.5
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
.+.+++++|.+ ++.++++++++. ++++.+.+++...+||+++ ++++|+++.+|+++
T Consensus 56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDD--DELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeC--CEEEEEEEhhhhhc
Confidence 44578999975 677899999998 9999999999999999985 38999999999864
No 143
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.58 E-value=8.7e-05 Score=56.92 Aligned_cols=55 Identities=22% Similarity=0.370 Sum_probs=48.3
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
.++.++|.. ++.++++++++. ++.+.+.+++..++||++++ ++++|+++.+|+.+
T Consensus 56 ~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRR--DFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcC--CCcEECCCCcHH-HHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence 468899964 677899999998 99999999999999999864 79999999999864
No 144
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.57 E-value=0.00012 Score=57.34 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=44.7
Q ss_pred cccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 207 SDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 207 ~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
+++|. .++.++++++++. ++++.|.+++.+++||++++ |+++|+++.+|+++
T Consensus 68 ~~~~~--~~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-~~~~Givt~~di~~ 119 (120)
T cd04641 68 RSQDF--EGVRTCSPDDCLR-TIFDLIVKARVHRLVVVDEN-KRVEGIISLSDILQ 119 (120)
T ss_pred cccCC--CCCeEEcCCCcHH-HHHHHHHhcCccEEEEECCC-CCEEEEEEHHHhhc
Confidence 44554 3567899999998 99999999999999999865 89999999999875
No 145
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.57 E-value=0.0001 Score=55.84 Aligned_cols=55 Identities=33% Similarity=0.430 Sum_probs=48.4
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
+.+++++|.+ +..++++++++. ++++.+.+++.+++||+++ ++++|+++.+|++.
T Consensus 50 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~~ 104 (105)
T cd04599 50 NRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGTIAL 104 (105)
T ss_pred cCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhcc
Confidence 3568899965 677899999998 9999999999999999985 89999999999863
No 146
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.56 E-value=0.00012 Score=55.87 Aligned_cols=54 Identities=11% Similarity=0.257 Sum_probs=47.2
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
.++.++|.+ +..++++++++. ++++.+.+++.+++||++ + |+++|+++.+|++.
T Consensus 50 ~~~~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~-~-~~~iGvit~~dl~~ 103 (104)
T cd04594 50 GDVVDYIVR--GIPYVRLTSTAE-EAWEVMMKNKTRWCPVVD-D-GKFKGIVTLDSILD 103 (104)
T ss_pred cchhhhhhc--CCcEEcCCCCHH-HHHHHHHHcCcceEEEEE-C-CEEEEEEEHHHhhc
Confidence 357888975 567899999998 999999999999999997 3 79999999999864
No 147
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.56 E-value=8.5e-05 Score=57.18 Aligned_cols=55 Identities=25% Similarity=0.427 Sum_probs=48.5
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
+.++.++|.+ ++.++++++++. ++++.+.+++.+++||+++ |+++|+++.+|+++
T Consensus 59 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence 4578899975 567899999998 9999999999999999985 79999999999875
No 148
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.55 E-value=7.9e-05 Score=57.55 Aligned_cols=55 Identities=22% Similarity=0.426 Sum_probs=46.4
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
.+.+++++|.+ ++.++++++++. ++++.+.+.+ .+||++++ ++++|+++.+|+++
T Consensus 61 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~--~~~Vv~~~-~~~~Gvit~~dil~ 115 (116)
T cd04643 61 VDLKVIDVMNT--DVPVIIDDADIE-EILHLLIDQP--FLPVVDDD-GIFIGIITRREILK 115 (116)
T ss_pred hCCcHHHHhcC--CCceecCCCCHH-HHHHHHhcCC--ceeEEeCC-CeEEEEEEHHHhhc
Confidence 45679999976 567899999998 9999998755 59999864 79999999999875
No 149
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.52 E-value=0.00016 Score=55.32 Aligned_cols=55 Identities=20% Similarity=0.387 Sum_probs=47.9
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
.++.++|.+ ++.+++.++++. ++++.+.+++.+.+||++++ ++++|+++.+|+++
T Consensus 56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDDS-GRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcCC-CCEEEEEEHHHhhh
Confidence 457788875 677899999998 99999999999999999864 79999999999865
No 150
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.51 E-value=0.00012 Score=57.94 Aligned_cols=58 Identities=22% Similarity=0.369 Sum_probs=49.4
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeC-CCCcEEEEEEechhcc
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYE-EPTNIIGLILVKNLLT 262 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~-~~~~ivGiv~~kDll~ 262 (304)
.+.+++++|++ ++.++++++++. ++++.+.+.++..+||+++ +.++++|+|+.+|+++
T Consensus 69 ~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 69 LDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred ccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 44678999975 677899999998 9999999999999999853 3478999999999875
No 151
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.49 E-value=0.00016 Score=55.46 Aligned_cols=56 Identities=23% Similarity=0.453 Sum_probs=49.1
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
.+.+++++|.+ ++.++++++++. ++++.+.+.+.+++||.+ + |+++|+++.+|+++
T Consensus 54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~-~-~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE-D-GRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe-C-CEEEEEEEhHHhhc
Confidence 45678999975 677899999998 999999999999999998 3 79999999999874
No 152
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.49 E-value=0.00012 Score=57.24 Aligned_cols=55 Identities=33% Similarity=0.503 Sum_probs=48.3
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
.+++++|.+ ++.++++++++. ++++.+.+++.+++||++++ ++++|+++.+|+++
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR--DPITVSPDTPVD-EASKLLLENSISCLPVVDEN-GQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC--CCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhh
Confidence 358899964 678899999998 99999999999999999764 79999999999875
No 153
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.48 E-value=0.00015 Score=55.59 Aligned_cols=55 Identities=29% Similarity=0.486 Sum_probs=48.5
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
+.++.++|.. ++.++++++++. ++++.+.+++.+++||+++ ++++|+++.+|+++
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence 3578899964 677899999998 9999999999999999985 79999999999874
No 154
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.47 E-value=0.00018 Score=54.32 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=41.2
Q ss_pred EEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 216 v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
+.++++++++. ++++.|.+++..++||++++ ++++|+++.+|+++
T Consensus 51 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~~-~~~~Giit~~di~~ 95 (96)
T cd04614 51 VVTATKRTTVS-ECAQKMKRNRIEQIPIINGN-DKLIGLLRDHDLLK 95 (96)
T ss_pred cEEecCCCCHH-HHHHHHHHhCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 67899999998 99999999999999999864 79999999999875
No 155
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.46 E-value=0.00015 Score=46.11 Aligned_cols=45 Identities=24% Similarity=0.564 Sum_probs=39.7
Q ss_pred EEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 216 v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
+.++++++++. ++.+.+.+.+++++||++++ ++++|+++.+|+.+
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~ 46 (49)
T smart00116 2 VVTVSPDTTLE-EALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIK 46 (49)
T ss_pred ceEecCCCcHH-HHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHH
Confidence 45688999998 99999999999999999865 79999999999865
No 156
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=97.41 E-value=0.00016 Score=72.68 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=51.3
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCC-CcEEEEEEechhcccC
Q 022005 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP-TNIIGLILVKNLLTIH 264 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~-~~ivGiv~~kDll~~~ 264 (304)
+.+++|+|++ ++.++++|++++ ++++.+.+++.+++||+|++. ++++|+|+.+|+++..
T Consensus 511 ~~~v~dim~~--~~~~v~~d~~L~-~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l 570 (574)
T PRK01862 511 DKTAADYAHT--PFPLLTPDMPLG-DALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY 570 (574)
T ss_pred cchHHHhccC--CCeeECCCCCHH-HHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence 4679999975 667899999998 999999999999999998653 4799999999998754
No 157
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.40 E-value=0.00024 Score=54.35 Aligned_cols=55 Identities=24% Similarity=0.378 Sum_probs=47.8
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
.++.++|.+ ++.++++++++. ++++.+.+.+...+||++++ ++++|+++.+|+++
T Consensus 55 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTK--DVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcC--CceEECCCCCHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence 468888853 677899999998 99999999999999999864 79999999999874
No 158
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.39 E-value=6.4e-05 Score=59.66 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=46.5
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHH---------HhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLI---------LEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~---------~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (304)
.+.+|+|+|++ ++.++++++++. ++.+.+ .+.+..++||.+++ |+++|+|+.+|++++
T Consensus 57 ~~~~v~~im~~--~~~~v~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~Givt~~Dl~~~ 123 (124)
T cd04608 57 PSDPVSKALYK--QFKRVNKNDTLG-KLSRILETDAFLLVFFEQISSAAIGKEKQ-EKPIGIVTKIDLLSY 123 (124)
T ss_pred CCCcHHHHhhc--cceecCCCCCHH-HHHhhcccCCceEEEeccccccccccccc-cceEEEEehhHhhhh
Confidence 45689999985 678899999998 888854 23466778888754 899999999999864
No 159
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.38 E-value=0.00017 Score=70.51 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=51.3
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 264 (304)
Q Consensus 204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~ 264 (304)
.+++|+|++ ++.++++++++. ++++.|.+++..++||+|++ ++++|+|+.+|+++..
T Consensus 148 ~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~ 204 (479)
T PRK07807 148 TQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRAT 204 (479)
T ss_pred CCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHh
Confidence 569999985 788999999998 99999999999999999864 7999999999998743
No 160
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.37 E-value=0.00018 Score=70.40 Aligned_cols=56 Identities=11% Similarity=0.223 Sum_probs=50.9
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (304)
Q Consensus 204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (304)
.+++++|++ +++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|+++.
T Consensus 146 ~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~ 201 (475)
T TIGR01303 146 TQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRA 201 (475)
T ss_pred CCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHH
Confidence 579999985 788999999998 99999999999999999864 799999999999874
No 161
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.35 E-value=0.0003 Score=53.96 Aligned_cols=56 Identities=18% Similarity=0.335 Sum_probs=48.3
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
+.+++++|.+ ++.+++.++++. ++++.+.+++.+.+||++++ ++++|+++.+|+++
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTR--DLVTVDPDEPVA-EAAKLMRKNNIRHHLVVDKG-GELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccC--CCEEECCCCcHH-HHHHHHHHcCccEEEEEcCC-CcEEEEEEHHHhcc
Confidence 3468889864 577899999998 89999999999999999865 88999999999874
No 162
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=97.34 E-value=0.00026 Score=63.81 Aligned_cols=62 Identities=18% Similarity=0.276 Sum_probs=54.8
Q ss_pred hccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005 199 LELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 264 (304)
Q Consensus 199 l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~ 264 (304)
-.+.+-+|+.+|++ .+.++.+|++.. |++-.+.+.|+..+||+|++ |+++|||+-.|++.+.
T Consensus 310 r~~~~~~vk~imt~--~v~tv~pdtpa~-~lvp~lad~g~H~lpvld~~-g~lvGIvsQtDliaal 371 (382)
T COG3448 310 RFLRPPTVKGIMTT--PVVTVRPDTPAV-ELVPRLADEGLHALPVLDAA-GKLVGIVSQTDLIAAL 371 (382)
T ss_pred hccCCCcccccccC--cceeecCCCcHH-HHHHHhhcCCcceeeEEcCC-CcEEEEeeHHHHHHHH
Confidence 34567899999996 678999999998 99999999999999999975 9999999999998653
No 163
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.33 E-value=0.00035 Score=53.41 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=46.9
Q ss_pred cccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 205 ~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
+++++|.+ ++.+++++++++ ++++.+.+++...+||++++ ++++|+++.+|+.+
T Consensus 56 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTR--NVITATPDEPID-VAARKMERHNISALPVVDAE-NRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCC--CCeEECCCCcHH-HHHHHHHHhCCCEEeEECCC-CcEEEEEEHHHhhh
Confidence 47888864 567899999998 99999999999999999864 89999999999864
No 164
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.32 E-value=0.00034 Score=55.20 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=44.2
Q ss_pred ccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 208 DAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 208 diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
+.|. .++.++++++++. ++++.+.+++.+++||++++ ++++|+++..|+++
T Consensus 75 ~~~~--~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKS--RPLITCTPSSTLK-EVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS 125 (126)
T ss_pred cccc--CCCeEECCCCcHH-HHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence 4553 3677899999998 99999999999999999865 89999999999875
No 165
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=97.32 E-value=0.00028 Score=54.05 Aligned_cols=53 Identities=17% Similarity=0.257 Sum_probs=45.4
Q ss_pred cccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 205 ~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
.+.++|. ++.++++++++. ++++.+.+++.+++||++++ ++++|+++.+|+++
T Consensus 58 ~~~~~~~---~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~ 110 (111)
T cd04590 58 DLRDLLR---PPLFVPESTPLD-DLLEEMRKERSHMAIVVDEY-GGTAGLVTLEDILE 110 (111)
T ss_pred CHHHHhc---CCeecCCCCcHH-HHHHHHHhcCCcEEEEEECC-CCEEEEeEHHHhhc
Confidence 4667664 356799999998 99999999999999999864 78999999999864
No 166
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.30 E-value=0.0002 Score=71.40 Aligned_cols=57 Identities=23% Similarity=0.355 Sum_probs=51.2
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (304)
..+|+|+|++ ++.++++++++. ++++.|.+++++++||++++ |+++|+++.+|+.+.
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~ 123 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARA 123 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHH
Confidence 3689999985 778999999998 99999999999999999865 899999999999764
No 167
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=97.28 E-value=0.00041 Score=53.22 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=43.4
Q ss_pred cccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 209 AMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 209 iMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
+|.+ ++.++++++++. ++.+.+.+++..++||++ .|+++|+++.+|+++
T Consensus 56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLK 104 (105)
T ss_pred hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhc
Confidence 7864 677899999998 999999999999999995 379999999999875
No 168
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.27 E-value=0.00035 Score=56.74 Aligned_cols=56 Identities=18% Similarity=0.411 Sum_probs=49.2
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
.+.++.++|.+ ++.+++.++++. ++++.+.+.+++++||+++ ++++|+++.+|+++
T Consensus 87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~ 142 (143)
T cd04634 87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE 142 (143)
T ss_pred hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 45678999975 677899999998 9999999999999999985 79999999999874
No 169
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=97.17 E-value=0.00027 Score=68.77 Aligned_cols=70 Identities=17% Similarity=0.316 Sum_probs=59.7
Q ss_pred HHHHHhhhhc---cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC
Q 022005 191 ETTIIAGALE---LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP 265 (304)
Q Consensus 191 e~~~i~~~l~---l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~ 265 (304)
++++..+++. -...+|+++||. ++++++..+-+- |+.-.|.+.+..|+||+++ |+++|+|+..|+++...
T Consensus 198 ~~dl~~~v~~~g~~~~~~V~evmT~--p~~svd~~~~~f-eAml~m~r~~I~hl~V~e~--gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 198 RKDLRSRVIADGRSKTQKVSEVMTS--PVISVDRGDFLF-EAMLMMLRNRIKHLPVTED--GQPLGILTLTDILRLFS 270 (610)
T ss_pred hHHHHHHHHhcCCCcccchhhhhcc--CceeecCcchHH-HHHHHHHHhCCceeeeecC--CeeeEEeeHHHHHHhhC
Confidence 4667777764 245689999995 899999999998 9999999999999999974 89999999999998654
No 170
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.14 E-value=0.0005 Score=53.29 Aligned_cols=57 Identities=25% Similarity=0.398 Sum_probs=46.7
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCc---eeeeeeCCCCcEEEEEEechhcc
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHS---RVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~s---r~PV~~~~~~~ivGiv~~kDll~ 262 (304)
.+.+++++|.+ ++.++++++++. ++++.+.+++.. ..||++++ ++++|+|+.+|+++
T Consensus 59 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~vv~~~-~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDP--DPLIVEADTPLE-EVSRLATGRDSQNLYDGFIVTEE-GRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCC--CcEEecCCCCHH-HHHHHHHcCCcccccccEEEeeC-CeEEEEEEHHHHhc
Confidence 45679999975 677899999998 999999888753 45777764 89999999999875
No 171
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.12 E-value=0.00052 Score=61.89 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=44.7
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEE
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~ 256 (304)
.+.+++|+|.+ ++.++++++++. ++++.+.+++..++||++++ ++++|+||
T Consensus 218 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~GvI~ 268 (268)
T TIGR00393 218 LKSEVRDFMTL--GPKTFKLDALLL-EALEFLERRKITSLVVVDDH-NKVLGVLH 268 (268)
T ss_pred ccCcHHHhCCC--CCeEECCCCcHH-HHHHHHHHcCCcEEEEECCC-CeEEEEEC
Confidence 35679999975 567899999998 99999999999999999864 79999986
No 172
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.10 E-value=0.00058 Score=66.52 Aligned_cols=60 Identities=23% Similarity=0.433 Sum_probs=52.9
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 264 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~ 264 (304)
.+.+++++|++ .++.++++++++. ++++.+.+++...+||++++ ++++|+|+.+|+++..
T Consensus 141 ~~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 141 KGKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKRR 200 (450)
T ss_pred CCCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhcc
Confidence 35689999984 4788999999998 99999999999999999875 8999999999998753
No 173
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.97 E-value=0.0008 Score=51.12 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=43.4
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
+.++.++|.+ ++.++++++++. ++.+.+.+ .+ ..||++++ ++++|+++.+|+++
T Consensus 56 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~-~~-~~~vv~~~-~~~~Gvvt~~di~~ 109 (110)
T cd04609 56 SLPVREVMGE--PLPTVDPDAPIE-ELSELLDR-GN-VAVVVDEG-GKFVGIITRADLLK 109 (110)
T ss_pred CcCHHHHhcC--CCceeCCCCcHH-HHHHHHHh-CC-ceeEEecC-CeEEEEEeHHHhhc
Confidence 3568889964 567899999998 89888877 33 47888765 89999999999875
No 174
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.97 E-value=0.0011 Score=50.31 Aligned_cols=54 Identities=20% Similarity=0.400 Sum_probs=46.2
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
.++.++|.+ ++.+++.++++. ++++.+.+++..++||+++ ++++|+++.+|+++
T Consensus 52 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~ 105 (106)
T cd04638 52 EQLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR 105 (106)
T ss_pred chHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 357788864 567789999998 9999999999999999984 69999999999864
No 175
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.96 E-value=0.0012 Score=60.75 Aligned_cols=86 Identities=10% Similarity=0.135 Sum_probs=64.8
Q ss_pred cccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc---cc------Cccccc
Q 022005 205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED---EV------PVKSVT 275 (304)
Q Consensus 205 ~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~---~~------~v~~~~ 275 (304)
+++++|.| ++++++++++. ++++.|.+++....||+|+. |.++|+|+.+|++...-++ +. .+...
T Consensus 134 ~l~~l~r~---~~~V~e~~~l~-~~L~~m~~~~~~~a~VvDe~-G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~- 207 (292)
T PRK15094 134 SMDKVLRQ---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQL- 207 (292)
T ss_pred CHHHHcCC---CcCcCCCCcHH-HHHHHHHhcCCEEEEEEeCC-CCEEEEeEHHHHHHHHhCCCccccccccccccEEe-
Confidence 47888964 45799999999 99999999999999999865 7899999999998753221 11 12221
Q ss_pred ccccceecCCCCCchhHHHHHHHHHh
Q 022005 276 IRRIPRYLISLGKCSCALFRSLSLFS 301 (304)
Q Consensus 276 ~~~~~~v~~~~~~~~~~l~~~l~~m~ 301 (304)
-..-+.|+..++ +.++-+.+.
T Consensus 208 ~~~~~~v~G~~~-----l~dl~~~l~ 228 (292)
T PRK15094 208 SRHTWTVRALAS-----IEDFNEAFG 228 (292)
T ss_pred CCCeEEEEeccC-----HHHHHHHhC
Confidence 223467889999 888877763
No 176
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=96.90 E-value=0.0015 Score=61.41 Aligned_cols=125 Identities=12% Similarity=0.173 Sum_probs=88.7
Q ss_pred cccHHHHHHHHHhhcccccC-CCCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceee
Q 022005 164 LFRRAELKTLVNLHGNEAGK-GGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVP 242 (304)
Q Consensus 164 ~~s~eEl~~lv~~~~~e~~~-~g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~P 242 (304)
.+++.|....+.+.+.-+-= .+-=.++++.+++++-.++.-- ++ +++.+.|+.++. ++++.-..++++.+|
T Consensus 72 TVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~g~---~~----~p~v~sp~~tvg-~v~~~k~~~gF~g~p 143 (503)
T KOG2550|consen 72 TVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYENGF---IN----NPIVISPTTTVG-EVKEAKEKHGFSGIP 143 (503)
T ss_pred ccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhccc---cc----CCcccCCcccch-hhhhhcccccccccc
Confidence 45777777776654211000 0111456778888877666422 22 556799999999 999999999999999
Q ss_pred eeeCC--CCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHHHHHHHHhh
Q 022005 243 VYYEE--PTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFST 302 (304)
Q Consensus 243 V~~~~--~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~ 302 (304)
|.++. ..+++|+|+-+|+-.. .+....+.++|...+++.|.... +.++=+.+++
T Consensus 144 vTe~g~~~~KLvG~vtsrdi~f~-~~~~~~~~~vmt~~~~~~~~gi~-----l~~~neiL~~ 199 (503)
T KOG2550|consen 144 VTEDGKRGSKLVGIITSRDIQFL-EDNSLLVSDVMTKNPVTGAQGIT-----LKEANEILKK 199 (503)
T ss_pred cccCCcccceeEEEEehhhhhhh-hcccchhhhhccccccccccccc-----HHHHHHHHHh
Confidence 99643 3689999999998544 44467889998888888998888 7766555544
No 177
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.88 E-value=0.002 Score=48.39 Aligned_cols=53 Identities=28% Similarity=0.565 Sum_probs=46.1
Q ss_pred ccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 206 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 206 V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
+.++|.+ ++.+++.++++. ++.+.+.+.+.+.+||++++ ++++|+++.+|+++
T Consensus 60 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTR--DVVTVSPDTSLE-EAAELMLEHGIRRLPVVDDE-GRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcC--CceecCCCcCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHhhc
Confidence 5677864 677889999998 99999999999999999875 89999999999875
No 178
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=96.75 E-value=0.0017 Score=63.86 Aligned_cols=58 Identities=24% Similarity=0.398 Sum_probs=51.5
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (304)
+.+++|+|++ .+++++++++++. ++++.+.+++++.+||++++ ++++|+++.+|+++.
T Consensus 146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~ 203 (486)
T PRK05567 146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKA 203 (486)
T ss_pred CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhh
Confidence 4579999983 4678999999998 99999999999999999865 899999999999864
No 179
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=96.75 E-value=0.0032 Score=60.58 Aligned_cols=89 Identities=17% Similarity=0.126 Sum_probs=65.6
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc---cccC-cccccc--
Q 022005 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---DEVP-VKSVTI-- 276 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~---~~~~-v~~~~~-- 276 (304)
+.+++++|. ++.++++++++. ++++.|.+++....+|+|+. |.++|+|+..|+++..-+ ++.+ -.+.+.
T Consensus 254 ~~~l~~~~~---~~~~Vpe~~~l~-~ll~~m~~~~~~~aiVvDE~-G~~~GiVT~eDileeivgei~de~d~~~~~i~~~ 328 (408)
T TIGR03520 254 NFDWQSLLR---EPYFVPENKKLD-DLLRDFQEKKNHLAIVVDEY-GGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKI 328 (408)
T ss_pred CCCHHHHcC---CCeEeCCCCcHH-HHHHHHHhcCceEEEEEcCC-CCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEe
Confidence 345788886 467899999999 99999999999999999875 889999999999875321 1111 111111
Q ss_pred -cccceecCCCCCchhHHHHHHHHHh
Q 022005 277 -RRIPRYLISLGKCSCALFRSLSLFS 301 (304)
Q Consensus 277 -~~~~~v~~~~~~~~~~l~~~l~~m~ 301 (304)
...+.++..++ +.++-+.|.
T Consensus 329 ~~~~~~v~G~~~-----l~~l~~~l~ 349 (408)
T TIGR03520 329 DDNNYVFEGKTS-----LKDFYKILK 349 (408)
T ss_pred CCCeEEEEeccC-----HHHHHHHhC
Confidence 23466888888 998888774
No 180
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.73 E-value=0.00064 Score=66.89 Aligned_cols=94 Identities=21% Similarity=0.328 Sum_probs=72.7
Q ss_pred cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCC----cEEEEEEechhcccCC------c----
Q 022005 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPT----NIIGLILVKNLLTIHP------E---- 266 (304)
Q Consensus 201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~----~ivGiv~~kDll~~~~------~---- 266 (304)
+++++++|+|.+ ++++++.-+.+. .+.+.+..+.|..|||+|+..+ ++.|++-.+.++.... +
T Consensus 579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~ 655 (762)
T KOG0474|consen 579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST 655 (762)
T ss_pred hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence 356789999986 899999999998 8999999999999999987543 6788887777642100 0
Q ss_pred ----------------c----------------ccCcccccccccceecCCCCCchhHHHHHHHHHhh
Q 022005 267 ----------------D----------------EVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFST 302 (304)
Q Consensus 267 ----------------~----------------~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~ 302 (304)
. -.++..+|-..|++||++++ +..++..|++
T Consensus 656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mS-----l~k~~~lFR~ 718 (762)
T KOG0474|consen 656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMS-----LAKAFILFRQ 718 (762)
T ss_pred cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccc-----hHHHHHHHHH
Confidence 0 02455555556899999999 9999999875
No 181
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=96.09 E-value=0.0045 Score=60.00 Aligned_cols=61 Identities=18% Similarity=0.341 Sum_probs=53.8
Q ss_pred ccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005 200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 264 (304)
Q Consensus 200 ~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~ 264 (304)
.-++..++|+|.+ ++++++++++-+ ++.+.+.++.....||+|++ ++++|+++..|++...
T Consensus 192 a~~~~~i~~im~~--~~~~V~~~~dqe-evA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidvi 252 (451)
T COG2239 192 AEPDELLKDLMED--DVVSVLADDDQE-EVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDVI 252 (451)
T ss_pred CCcHhHHHHHhcc--cceeecccCCHH-HHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHHH
Confidence 4456789999986 488999999998 99999999999999999875 8999999999998754
No 182
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.03 E-value=0.019 Score=55.17 Aligned_cols=91 Identities=12% Similarity=0.039 Sum_probs=68.9
Q ss_pred ccccccccccce-EEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCccccccccccee
Q 022005 204 KTASDAMTPIAE-TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRY 282 (304)
Q Consensus 204 ~~V~diMtpr~~-v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v 282 (304)
.++.++|.+... .+...++.+.. ++++.+.+.+.+...|+|++ +++.|+++.+++.+...+ ..++.+.+.....++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 350 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQ-QQGLDAALIDAPLAV 350 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhc-CCchhhhhccCCcee
Confidence 567888854221 12334566777 89999999999999999865 899999999999765433 235666656677889
Q ss_pred cCCCCCchhHHHHHHHHHhh
Q 022005 283 LISLGKCSCALFRSLSLFST 302 (304)
Q Consensus 283 ~~~~~~~~~~l~~~l~~m~~ 302 (304)
+++++ +.+++..|.+
T Consensus 351 ~~~~~-----~~~~~~~~~~ 365 (400)
T PRK10070 351 DAQTP-----LSELLSHVGQ 365 (400)
T ss_pred CCCCC-----HHHHHHHHHh
Confidence 99999 9999998864
No 183
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=95.87 E-value=0.0088 Score=55.41 Aligned_cols=58 Identities=16% Similarity=0.353 Sum_probs=51.7
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (304)
Q Consensus 202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (304)
++.++..+|+. +++++.+.+|+. .+...|.-.|+.-+||++++ .+++|+++.+|+++.
T Consensus 247 ~~t~ieKVMtk--np~tv~~~tsVA-svaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk~ 304 (432)
T COG4109 247 PSTTIEKVMTK--NPITVRAKTSVA-SVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLKS 304 (432)
T ss_pred CCccHHHHhcc--CCeeecccchHH-HHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHHH
Confidence 45688999985 678999999999 89999999999999999875 899999999999874
No 184
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=95.62 E-value=0.0097 Score=47.93 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=31.1
Q ss_pred ceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCC
Q 022005 214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPT 249 (304)
Q Consensus 214 ~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~ 249 (304)
.+++++++++++. ++++.|.+++.+++||++++.+
T Consensus 86 ~~~~~v~~~~~l~-ea~~~m~~~~~~~lPVvd~~~~ 120 (133)
T cd04592 86 CGLWTCTPDTDLT-TAKKLMEAKGVKQLPVVKRGVD 120 (133)
T ss_pred CCCEEECCCCCHH-HHHHHHHHcCCCcCCEecCCcC
Confidence 4688999999998 9999999999999999986543
No 185
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=95.53 E-value=0.012 Score=48.59 Aligned_cols=60 Identities=15% Similarity=0.283 Sum_probs=45.1
Q ss_pred hccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC
Q 022005 199 LELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP 265 (304)
Q Consensus 199 l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~ 265 (304)
=++.+.+|+++|-- ...++++|.+++ ++..+.+ +|...-|.+ +|+++||++..|+++...
T Consensus 125 e~i~~~~vr~vM~e--~fP~Vs~~~~l~--vI~~LL~-~~~AVlV~e--~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 125 ESIRSLRVREVMGE--PFPTVSPDESLN--VISQLLE-EHPAVLVVE--NGKVVGIITKADIMKLLA 184 (187)
T ss_pred cchhhhhHHHHhcC--CCCcCCCCCCHH--HHHHHHh-hCCeEEEEe--CCceEEEEeHHHHHHHHh
Confidence 56788999999963 444799999996 5555554 455567775 389999999999987543
No 186
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=95.50 E-value=0.011 Score=55.65 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=51.6
Q ss_pred cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (304)
Q Consensus 201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (304)
-....+.|+|+++. ++.+.+.+++ ++-+.+.++.-.++||++++ |+++-++...|+.+.
T Consensus 168 ~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~~~-gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 168 DNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVDDK-GELVAMLSRTDLMKN 226 (503)
T ss_pred cccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceeccC-Cceeeeeehhhhhhh
Confidence 35567899999965 7889999998 89999999999999999865 999999999999763
No 187
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=95.27 E-value=0.018 Score=54.62 Aligned_cols=57 Identities=21% Similarity=0.408 Sum_probs=49.0
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC
Q 022005 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP 265 (304)
Q Consensus 204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~ 265 (304)
..+.+.|.+ +..++++++++. +++..+.+++++ +||+|++ ++++|+|+..+++....
T Consensus 302 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 302 QGLQDVLID--DIYTVDAGTLLR-ETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDALY 358 (363)
T ss_pred Cchhhhhcc--CCceECCCCcHH-HHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence 468888864 566899999998 999999999999 9999865 89999999999987543
No 188
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=94.26 E-value=0.037 Score=53.84 Aligned_cols=54 Identities=22% Similarity=0.362 Sum_probs=42.7
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (304)
+.++.|+|.+ ++.++++++++. ++++.+.+++ .||++++ ++++|+|+.+|+++.
T Consensus 399 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~~~~~~---~~vV~~~-g~liGvvt~~dll~~ 452 (454)
T TIGR01137 399 DDAVSKVMSK--KFIQIGEGEKLS-DLSKFLEKNS---SAIVTEE-GKPIGVVTKIDLLSF 452 (454)
T ss_pred CCCHHHhcCC--CCeEECCcCcHH-HHHHHHHHCC---eeEEEEC-CEEEEEEEHHHHHHh
Confidence 3579999975 567899999998 8999887643 3555544 799999999999864
No 189
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=94.11 E-value=0.094 Score=50.05 Aligned_cols=81 Identities=12% Similarity=0.148 Sum_probs=61.3
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcccc-----C-cccc------ccccccee
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEV-----P-VKSV------TIRRIPRY 282 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~-----~-v~~~------~~~~~~~v 282 (304)
++..+..++++. ++++.|...++|.+||+++. ++.+|++...|+.....+... . +++. -..+++++
T Consensus 238 ~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc 315 (381)
T KOG1764|consen 238 NIASISEDTPVI-EALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTC 315 (381)
T ss_pred hheeecCCCcHH-HHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEE
Confidence 588899999998 99999999999999999875 777999999999765433211 1 2221 01234667
Q ss_pred cCCCCCchhHHHHHHHHHhh
Q 022005 283 LISLGKCSCALFRSLSLFST 302 (304)
Q Consensus 283 ~~~~~~~~~~l~~~l~~m~~ 302 (304)
.++.+ +.+++.+|..
T Consensus 316 ~~~ss-----L~~vi~~lv~ 330 (381)
T KOG1764|consen 316 RPTST-----LAEVIDKLVA 330 (381)
T ss_pred eecch-----HHHHHHHHHh
Confidence 78888 9999998865
No 190
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=94.06 E-value=0.2 Score=47.57 Aligned_cols=78 Identities=10% Similarity=0.097 Sum_probs=61.7
Q ss_pred EEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHHHHH
Q 022005 218 AIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALFRSL 297 (304)
Q Consensus 218 ~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l 297 (304)
...++.+.. ++++.+...+.....|++++ ++..|+++.+++..+.... ..+.+.+.....+++++++ +.+++
T Consensus 254 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~ 325 (363)
T TIGR01186 254 TKTADKGPR-SALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKKA-QGLQDVLIDDIYTVDAGTL-----LRETV 325 (363)
T ss_pred eecCCCCHH-HHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhcC-CchhhhhccCCceECCCCc-----HHHHH
Confidence 455666777 89999998899899999865 8999999999987654332 3466666667788999999 99999
Q ss_pred HHHhhc
Q 022005 298 SLFSTS 303 (304)
Q Consensus 298 ~~m~~~ 303 (304)
..|.++
T Consensus 326 ~~~~~~ 331 (363)
T TIGR01186 326 RKVLKA 331 (363)
T ss_pred HHHHhC
Confidence 998753
No 191
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=94.02 E-value=0.11 Score=51.65 Aligned_cols=91 Identities=20% Similarity=0.251 Sum_probs=63.4
Q ss_pred ccccccccc---eEEEEeCC-CCccHHHHHHHHhcCCceeeee-eCCCCcEEEEEEechhcccCC------c--------
Q 022005 206 ASDAMTPIA---ETFAIDIN-AKLDKELMNLILEKGHSRVPVY-YEEPTNIIGLILVKNLLTIHP------E-------- 266 (304)
Q Consensus 206 V~diMtpr~---~v~~l~~~-~t~~~e~~~~~~~~~~sr~PV~-~~~~~~ivGiv~~kDll~~~~------~-------- 266 (304)
..++|-|+. ....++.+ ++++ |....+.++.|+.|||+ +++.+..+|++..+|+..... +
T Consensus 545 ~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~ 623 (696)
T KOG0475|consen 545 AIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIY 623 (696)
T ss_pred hhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccc
Confidence 455565543 34566665 8998 99999999999999988 455688999999999853110 0
Q ss_pred -------------cccCcccccccccceecCCCCCchhHHHHHHHHHhh
Q 022005 267 -------------DEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFST 302 (304)
Q Consensus 267 -------------~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~ 302 (304)
...+++++|--.|.+|...++ ...+++.|++
T Consensus 624 f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp-----~~~v~~~F~~ 667 (696)
T KOG0475|consen 624 FNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTP-----METVVDLFRK 667 (696)
T ss_pred cCCCCccccCCCCCCcCceeeccCCcccccccCc-----HHHHHHHHHh
Confidence 023456664445666777777 8888888764
No 192
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=93.95 E-value=0.066 Score=51.09 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=46.0
Q ss_pred cccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005 211 TPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 264 (304)
Q Consensus 211 tpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~ 264 (304)
....+++++.++.|+. ++++.+..++..|+.|+|++ |.++|+++..|++...
T Consensus 307 ~~~~~vvtc~~~ssL~-~vi~~lv~~~vHRl~VVd~~-~~l~GvvSLsDil~~l 358 (381)
T KOG1764|consen 307 IRFEGVVTCRPTSTLA-EVIDKLVAHRVHRLWVVDED-GVLVGVISLSDILSYL 358 (381)
T ss_pred cccCccEEEeecchHH-HHHHHHHhcCceEEEEEcCC-CcEEEEeeHHHHHHHH
Confidence 3445689999999999 99999999999999999875 8999999999998753
No 193
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=93.82 E-value=0.049 Score=52.32 Aligned_cols=58 Identities=24% Similarity=0.346 Sum_probs=48.3
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC
Q 022005 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP 265 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~ 265 (304)
+..++++|.+ +..++++++++. +++..+.++.+. +||+|++ |+++|+|+..++++...
T Consensus 336 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 336 QQGLDAALID--APLAVDAQTPLS-ELLSHVGQAPCA-VPVVDED-QQYVGIISKGMLLRALD 393 (400)
T ss_pred CCchhhhhcc--CCceeCCCCCHH-HHHHHHHhCCCc-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence 3467788864 566899999998 999999988777 9999864 99999999999987653
No 194
>PRK11573 hypothetical protein; Provisional
Probab=93.47 E-value=0.2 Score=48.32 Aligned_cols=78 Identities=14% Similarity=0.020 Sum_probs=56.4
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc----c-c----cCcccccccccceecCC
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----D-E----VPVKSVTIRRIPRYLIS 285 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~-~----~~v~~~~~~~~~~v~~~ 285 (304)
++..++.+.++. ++++.|++++..-.-|+|+. |...|+|+..|++...-+ + + .++.+. -...+.++..
T Consensus 263 ~~~~Vpe~~~l~-~lL~~~~~~~~~~AiVvDEy-G~~~GiVTleDilEeivGei~de~d~~~~~~i~~~-~~~~~~v~G~ 339 (413)
T PRK11573 263 EIYFVPEGTPLS-TQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQ-NDGSVIIDGT 339 (413)
T ss_pred CCeEeCCCCcHH-HHHHHHHhcCCeEEEEEecC-CCeEEEeeHHHHHHHHhCCCCcccCcccccceEEe-cCCEEEEEee
Confidence 567899999999 99999998877666788865 889999999999874321 1 1 112222 1234668888
Q ss_pred CCCchhHHHHHHHHH
Q 022005 286 LGKCSCALFRSLSLF 300 (304)
Q Consensus 286 ~~~~~~~l~~~l~~m 300 (304)
++ ++++-+.+
T Consensus 340 ~~-----l~d~~~~l 349 (413)
T PRK11573 340 AN-----VREINKAF 349 (413)
T ss_pred eE-----HHHHHHHh
Confidence 88 88887765
No 195
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=87.90 E-value=1.3 Score=41.70 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=46.3
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (304)
Q Consensus 204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (304)
.+-.|++.--.+++++|..+++. +.+..+.+.+-.---|+|+- |++.|+|+..|++..
T Consensus 265 ~~k~d~~~~a~epyFVPe~Tpl~-~QL~~F~~~k~hialVVDEY-G~i~GLVTLEDIlEE 322 (423)
T COG4536 265 FTKEDILRAADEPYFVPEGTPLS-DQLVAFQRNKKHIALVVDEY-GDIQGLVTLEDILEE 322 (423)
T ss_pred ccHhHHHHHhcCCeecCCCCcHH-HHHHHHHHhcceEEEEEecc-CcEEeeeeHHHHHHH
Confidence 45566776667899999999998 88888886665555677764 899999999999874
No 196
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=86.59 E-value=2.2 Score=41.35 Aligned_cols=99 Identities=12% Similarity=0.016 Sum_probs=63.4
Q ss_pred HHHHHhhhhcccc-ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc---
Q 022005 191 ETTIIAGALELTE-KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--- 266 (304)
Q Consensus 191 e~~~i~~~l~l~~-~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~--- 266 (304)
-++++....+-+. ...+..+. ++..++++.++. ++++.|++++-.-.-|+|+. |.+.|+|+..|++...-+
T Consensus 258 ~Kdll~~~~~~~~~~~~~~~~~---~~~~Vpet~~~~-~lL~~~r~~~~hmAiVvDEy-G~~~GlVTleDIiEeIvGei~ 332 (429)
T COG1253 258 VKDLLRALLDGQSDLDLRVLVR---PPLFVPETLSLS-DLLEEFREERTHMAIVVDEY-GGVEGLVTLEDIIEEIVGEIP 332 (429)
T ss_pred HHHHHHHHhcCccccchhhccc---CCeEecCCCcHH-HHHHHHHHhCCeEEEEEEcC-CCeEEEeEHHHHHHHHhCCCc
Confidence 3445555544432 22332222 677899999999 99999997766556677765 899999999999875322
Q ss_pred ---c---ccCcccccccccceecCCCCCchhHHHHHHHHH
Q 022005 267 ---D---EVPVKSVTIRRIPRYLISLGKCSCALFRSLSLF 300 (304)
Q Consensus 267 ---~---~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m 300 (304)
+ ...+.+. ..+-+.+...++ +.++-+.+
T Consensus 333 de~d~~~~~~~~~~-~~~~~~v~G~~~-----l~e~~~~l 366 (429)
T COG1253 333 DEHDEDEEEDIIQR-DDDGWLVDGRVP-----LEELEELL 366 (429)
T ss_pred CcccccccccceEe-cCCcEEEecccc-----HHHHHHHh
Confidence 1 1122221 122356888888 88776655
No 197
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=86.13 E-value=0.8 Score=45.82 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=46.8
Q ss_pred ccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005 206 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (304)
Q Consensus 206 V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (304)
....|.| .+.+++.++++. .+...++.-|..++-|+.+. .+++|+++.+|+.+.
T Consensus 692 l~p~~n~--sPytV~~~mSl~-k~~~lFR~lGLRhLlVv~~~-~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 692 LHPFMNP--SPYTVPETMSLA-KAFILFRQLGLRHLLVVPKT-NRVVGILTRKDLARY 745 (762)
T ss_pred cccccCC--CCcccCcccchH-HHHHHHHHhcceeEEEecCC-CceeEEEehhhhhhH
Confidence 4567776 667899999999 89999999999999999864 789999999999854
No 198
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=85.53 E-value=0.52 Score=31.30 Aligned_cols=28 Identities=11% Similarity=-0.002 Sum_probs=24.3
Q ss_pred cccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005 271 VKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS 303 (304)
Q Consensus 271 v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~ 303 (304)
++++|.+++.+++++++ +.++++.|+++
T Consensus 1 v~~~m~~~~~~v~~~~~-----l~~~~~~~~~~ 28 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDS-----LEEALEIMRKN 28 (57)
T ss_dssp HHHHSBSSSEEEETTSB-----HHHHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCc-----HHHHHHHHHHc
Confidence 35678889999999999 99999999864
No 199
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=82.79 E-value=1 Score=43.03 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=42.8
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 264 (304)
Q Consensus 204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~ 264 (304)
.++.+ + .++..++++++++. +++....++++. +||++ + |+++|+|+..+++...
T Consensus 326 ~~~~~-~--~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~-~-~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 326 QEVES-L--EAAPTVINPDTLMR-DVLAARHRTGGA-ILLVE-N-GRIVGVIGDDNIYHAL 379 (382)
T ss_pred cchhh-h--cccCcccCCCCcHH-HHHHHHhcCCCC-eEEee-C-CeEEEEEeHHHHHHHH
Confidence 34555 3 23667899999998 999998888876 78887 3 8999999999988754
No 200
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=72.95 E-value=1.7 Score=44.55 Aligned_cols=58 Identities=12% Similarity=0.170 Sum_probs=48.0
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC-CCcEEEEEEechhccc
Q 022005 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE-PTNIIGLILVKNLLTI 263 (304)
Q Consensus 203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~-~~~ivGiv~~kDll~~ 263 (304)
.+.|+|+|+. ++.++..+.|.. |+.+.+..+...-+|++++. ..-++|.|..+.+...
T Consensus 587 ~v~VE~iMV~--dv~yI~k~~Ty~-elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~l 645 (931)
T KOG0476|consen 587 TVKVEHIMVT--DVKYITKDTTYR-ELREALQTTTLRSFPLVESKESMILLGSVARRYLTAL 645 (931)
T ss_pred EEEeeeeccc--cceeeeccCcHH-HHHHHHHhCccceeccccCcccceeeehhHHHHHHHH
Confidence 5679999984 899999999998 88888877768999999753 2458999999998653
No 201
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=71.88 E-value=4.2 Score=36.81 Aligned_cols=60 Identities=20% Similarity=0.209 Sum_probs=42.4
Q ss_pred cccccccccccccceE--EEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 201 LTEKTASDAMTPIAET--FAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 201 l~~~~V~diMtpr~~v--~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
++..++.|.|.+.... ..+.....-. +++..+...+.+-+||+|++ ++++|.++..|++.
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ls~~~~~~~~~~~Vvd~~-g~~~G~vt~~~l~~ 307 (309)
T COG1125 246 LSLVSVADAVRRGEPADGEPLLEGFVDR-DALSDFLARGRSVLPVVDED-GRPLGTVTRADLLD 307 (309)
T ss_pred cchhhHHHhhcccccccCCccccchhhH-HHHHHHHhcCCceeEEECCC-CcEeeEEEHHHHhh
Confidence 3566788888764321 1122333344 67777888899999999875 99999999999864
No 202
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=65.21 E-value=7.3 Score=38.54 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=29.9
Q ss_pred ccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005 225 LDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (304)
Q Consensus 225 ~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (304)
++ ...+.+.+.|-+-++|+++ +++.|+++.||+.+-
T Consensus 415 l~-~~~~~vs~~GGTPL~V~~~--~~~~GVI~LkDivK~ 450 (681)
T COG2216 415 LD-AAVDEVSRLGGTPLVVVEN--GRILGVIYLKDIVKP 450 (681)
T ss_pred HH-HHHHHHHhcCCCceEEEEC--CEEEEEEEehhhcch
Confidence 44 5667777889999999984 799999999999863
No 203
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=60.35 E-value=7.2 Score=36.40 Aligned_cols=48 Identities=23% Similarity=0.353 Sum_probs=38.2
Q ss_pred eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC
Q 022005 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP 265 (304)
Q Consensus 215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~ 265 (304)
++.+++.|+++. +.+..+.+.+. -+||+|++ ++.+|++...+++.+..
T Consensus 336 ~~~~v~~d~~~~-~~~~~~~~~~~-p~aVvde~-~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 336 DVLTVDADTPLS-EILARIRQAPC-PVAVVDED-GRYVGIISRGELLEALA 383 (386)
T ss_pred cccccCccchHH-HHHHHHhcCCC-ceeEEcCC-CcEEEEecHHHHHHHHh
Confidence 566788999998 78877776554 47899875 99999999999887653
No 204
>PF14044 NETI: NETI protein
Probab=60.04 E-value=9.7 Score=25.86 Aligned_cols=28 Identities=18% Similarity=0.446 Sum_probs=23.2
Q ss_pred EEeCCCCccHHHHHHHHhcCCcee-----eeeeC
Q 022005 218 AIDINAKLDKELMNLILEKGHSRV-----PVYYE 246 (304)
Q Consensus 218 ~l~~~~t~~~e~~~~~~~~~~sr~-----PV~~~ 246 (304)
.+..+.|++ +.++.|.+.||.-+ ||+.+
T Consensus 3 eV~enETI~-~CL~RM~~eGY~PvrR~EkPiF~e 35 (57)
T PF14044_consen 3 EVEENETIS-DCLARMKKEGYMPVRRIEKPIFKE 35 (57)
T ss_pred eccCCCcHH-HHHHHHHHcCCCceeeccccceEE
Confidence 467899999 99999999999654 77765
No 205
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=59.78 E-value=22 Score=31.78 Aligned_cols=86 Identities=13% Similarity=0.173 Sum_probs=59.9
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc---------cccCcccc
Q 022005 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---------DEVPVKSV 274 (304)
Q Consensus 204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~---------~~~~v~~~ 274 (304)
-.++++..| .+.+|.+-.++ ..++.++.+++.-.-|+|+- |-+-|.|+..|++...-+ +..+++.+
T Consensus 133 F~i~~lLRP---av~VPESKrvd-~lLkeFR~~RnHMAIViDEf-GgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~l 207 (293)
T COG4535 133 FDIKELLRP---AVVVPESKRVD-RLLKEFRSQRNHMAIVIDEF-GGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQL 207 (293)
T ss_pred ccHHHhccc---ceecccchhHH-HHHHHHHhhcCceEEEEecc-CCeeeeEEHHHHHHHHhcccccccchhhhhhhHhh
Confidence 346666654 56789999998 89999997777666788864 889999999999875321 12345554
Q ss_pred cccccceecCCCCCchhHHHHHHHHH
Q 022005 275 TIRRIPRYLISLGKCSCALFRSLSLF 300 (304)
Q Consensus 275 ~~~~~~~v~~~~~~~~~~l~~~l~~m 300 (304)
.+.-+.|..-++ +.+-=+.|
T Consensus 208 -s~~~~~VrALT~-----IedFNe~F 227 (293)
T COG4535 208 -SRHTWRVRALTE-----IEDFNEAF 227 (293)
T ss_pred -cCCceEEEeccc-----HHHHHHHh
Confidence 566666776666 65544444
No 206
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=58.58 E-value=11 Score=38.04 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=43.5
Q ss_pred cccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005 205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI 263 (304)
Q Consensus 205 ~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~ 263 (304)
..+++|.+ .++++....+.+ -+++++++-|.+..-|-+ +|++.|+|+.||+++.
T Consensus 640 ~lk~il~~--tp~tv~d~tp~~-~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 640 DLKDILDM--TPFTVTDLTPME-TVVDLFRKLGLRQILVTK--NGILLGIITKKDCLRH 693 (696)
T ss_pred CceeeccC--CcccccccCcHH-HHHHHHHhhCceEEEEcc--CCeeEeeeehHHHHHh
Confidence 35667654 556788888887 899999999999988765 3899999999999864
No 207
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=56.92 E-value=16 Score=34.92 Aligned_cols=89 Identities=12% Similarity=0.029 Sum_probs=55.7
Q ss_pred HHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc-cccCcc
Q 022005 194 IIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-DEVPVK 272 (304)
Q Consensus 194 ~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~-~~~~v~ 272 (304)
++..+-...-.+++++|.|.... ...+.+ . +++ +++.+.+.|+++ |+++..+....... +...+.
T Consensus 264 ~~~~~~~~~~l~a~~~m~~~~~~--~~~~~~-~--~~~---~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 329 (382)
T TIGR03415 264 FVAHTNPLNVLTARSLMRPLTDL--EHVDGG-W--CVS---DRRDTWLFTIDK------QVRRRDAKLPVQAWAAEQEVE 329 (382)
T ss_pred HhcccCcccceeHHHHhcccccc--cccCcc-h--hhh---hcccceeEeecc------ceecccchHhHhhcccccchh
Confidence 34444445567899999663332 222222 2 333 378888888863 88887776543221 223466
Q ss_pred cccccccceecCCCCCchhHHHHHHHHHhh
Q 022005 273 SVTIRRIPRYLISLGKCSCALFRSLSLFST 302 (304)
Q Consensus 273 ~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~ 302 (304)
++ .+....++++++ +.+++..+.+
T Consensus 330 ~~-~~~~~~~~~~~~-----~~~~~~~~~~ 353 (382)
T TIGR03415 330 SL-EAAPTVINPDTL-----MRDVLAARHR 353 (382)
T ss_pred hh-cccCcccCCCCc-----HHHHHHHHhc
Confidence 63 678888999999 9999987654
No 208
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=55.75 E-value=15 Score=34.44 Aligned_cols=69 Identities=12% Similarity=0.137 Sum_probs=45.5
Q ss_pred HHHHHhhhhccccccccccccccceEEEEeCC-CCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005 191 ETTIIAGALELTEKTASDAMTPIAETFAIDIN-AKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262 (304)
Q Consensus 191 e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~-~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~ 262 (304)
-++.++++-...-.++++||.+ .+.-....+ .... .+.+.+...+-+.+-+++ ..++.+|+++..+...
T Consensus 261 V~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~-~al~~~~~~~~~~~~~~~-~~~~~~g~v~~~~~~~ 330 (386)
T COG4175 261 VRDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPR-VALKLLRDEGREYGYAVD-RGNKFVGVVSIDSLVK 330 (386)
T ss_pred HHHHHhcCChhheeeHHHhhcc-cccccccccccccc-hhhhhhhhccchhhHHHh-ccCceeeEEeccchhc
Confidence 3567777777788899999986 332222222 3333 567777766665555666 4467999999888765
No 209
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=54.69 E-value=24 Score=21.66 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=15.9
Q ss_pred ccccChH-HHHHHHHHHHHHHHHHHH
Q 022005 5 YSCCGMG-FIIHIVVIVFLVMFAGLM 29 (304)
Q Consensus 5 ~~~~~~~-~~~~~~~~~~ll~lsa~f 29 (304)
+|-+-.+ +|..++++++.+++|.+|
T Consensus 10 VELNRTSLY~GLllifvl~vLFssyf 35 (37)
T PF02419_consen 10 VELNRTSLYWGLLLIFVLAVLFSSYF 35 (37)
T ss_dssp BE--CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHhHHHHHHHHHHHHHHhhhhh
Confidence 4555555 677777777777777766
No 210
>CHL00038 psbL photosystem II protein L
Probab=53.44 E-value=22 Score=21.80 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=16.9
Q ss_pred ccccChH-HHHHHHHHHHHHHHHHHH
Q 022005 5 YSCCGMG-FIIHIVVIVFLVMFAGLM 29 (304)
Q Consensus 5 ~~~~~~~-~~~~~~~~~~ll~lsa~f 29 (304)
+|-+-.+ +|..+++.++.+++|.+|
T Consensus 11 VELNRTSLy~GLLlifvl~vlfssyf 36 (38)
T CHL00038 11 VELNRTSLYWGLLLIFVLAVLFSNYF 36 (38)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHh
Confidence 4555556 577777777777777765
No 211
>PF11131 PhrC_PhrF: Rap-phr extracellular signalling
Probab=46.86 E-value=18 Score=22.11 Aligned_cols=19 Identities=5% Similarity=0.146 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022005 18 VIVFLVMFAGLMSGLTLGL 36 (304)
Q Consensus 18 ~~~~ll~lsa~fs~~E~Al 36 (304)
++++|+..++.|...+.|-
T Consensus 5 l~l~CLA~aavF~~a~va~ 23 (37)
T PF11131_consen 5 LFLICLAAAAVFTAAGVAN 23 (37)
T ss_pred HHHHHHHHHHHHHhhcccC
Confidence 3567999999999998854
No 212
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=46.84 E-value=28 Score=21.46 Aligned_cols=25 Identities=12% Similarity=0.296 Sum_probs=16.6
Q ss_pred ccccChH-HHHHHHHHHHHHHHHHHH
Q 022005 5 YSCCGMG-FIIHIVVIVFLVMFAGLM 29 (304)
Q Consensus 5 ~~~~~~~-~~~~~~~~~~ll~lsa~f 29 (304)
+|-+-.+ +|..+++.++.+++|.+|
T Consensus 12 VELNRTSLy~GlLlifvl~vLFssYf 37 (39)
T PRK00753 12 VELNRTSLYLGLLLVFVLGILFSSYF 37 (39)
T ss_pred ceechhhHHHHHHHHHHHHHHHHhhc
Confidence 4555556 577777777777777765
No 213
>PF03563 Bunya_G2: Bunyavirus glycoprotein G2; InterPro: IPR005168 Bunyavirus has three genomic segments: small (S), middle-sized (M), and large (L). The S segment encodes the nucleocapsid and a non-structural protein. The M segment codes for two glycoproteins, G1 and G2, and another non-structural protein (NSm). The L segment codes for an RNA polymerase. This entry represents the polyprotein region forming the G2 glycoprotein, which interacts with the IPR005167 from INTERPRO G1 glycoprotein [].
Probab=45.19 E-value=79 Score=28.56 Aligned_cols=39 Identities=23% Similarity=0.378 Sum_probs=29.3
Q ss_pred hHHHHhhhhhhhHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022005 105 VTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLL 157 (304)
Q Consensus 105 ~~l~lvfgEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~P~~~~~~~~~~~l~ 157 (304)
++++.+|.-++-|+ ++.+++.-+|+|++++..++-++-.
T Consensus 196 ~~~~~i~~~Iltkt--------------Yi~YlliPiF~P~~~~Yg~~ynk~c 234 (285)
T PF03563_consen 196 TLIIFIFLIILTKT--------------YICYLLIPIFYPIAYLYGWLYNKSC 234 (285)
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666667666 5677888899999999988888754
No 214
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=36.23 E-value=26 Score=26.63 Aligned_cols=29 Identities=21% Similarity=0.088 Sum_probs=25.2
Q ss_pred cCcccccccccceecCCCCCchhHHHHHHHHHhh
Q 022005 269 VPVKSVTIRRIPRYLISLGKCSCALFRSLSLFST 302 (304)
Q Consensus 269 ~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~ 302 (304)
.++.++|.+++.+++++++ +.++++.|++
T Consensus 58 ~~v~dim~~~~~~v~~~~~-----l~~a~~~~~~ 86 (113)
T cd04597 58 PRVRDVINRKPVTARPNDP-----LREALNLMHE 86 (113)
T ss_pred hhHHHhcCCCCCEECCcCc-----HHHHHHHHHH
Confidence 4688888888899999999 9999999965
No 215
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=35.09 E-value=1.7e+02 Score=20.98 Aligned_cols=10 Identities=20% Similarity=0.401 Sum_probs=6.6
Q ss_pred HHHHHHHHHH
Q 022005 22 LVMFAGLMSG 31 (304)
Q Consensus 22 ll~lsa~fs~ 31 (304)
++++||++|-
T Consensus 33 lfiisa~lSw 42 (74)
T PF15086_consen 33 LFIISAVLSW 42 (74)
T ss_pred HHHHHHHHHH
Confidence 6667777764
No 216
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=32.88 E-value=39 Score=35.12 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=49.2
Q ss_pred HHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005 191 ETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH 264 (304)
Q Consensus 191 e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~ 264 (304)
|.+++..-+++++..+.. -++-+-..+++- ++-.++.--|.++.-|.+ .|+++|+|..||+.++.
T Consensus 793 e~~~l~~~ld~~~~~IDp------aPfQLve~TSL~-K~HtLFSLLgL~~AYVT~--~GrLvGVValkELRkAi 857 (931)
T KOG0476|consen 793 EEEQLSQKLDLDECAIDP------APFQLVEGTSLY-KVHTLFSLLGLNHAYVTS--CGRLVGVVALKELRKAI 857 (931)
T ss_pred HHHHhccccchhhCCCCC------CceeeeccchHH-HHHHHHHHhccchhhhcc--cCcEEEEEEHHHHHHHH
Confidence 356666666666655442 445677888888 888888888888888875 58999999999998754
No 217
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=31.58 E-value=49 Score=25.49 Aligned_cols=18 Identities=33% Similarity=0.636 Sum_probs=12.7
Q ss_pred eeeeeeCCCCcEEEEEEec
Q 022005 240 RVPVYYEEPTNIIGLILVK 258 (304)
Q Consensus 240 r~PV~~~~~~~ivGiv~~k 258 (304)
..||++.+ |+++|+|...
T Consensus 93 ~~PV~d~~-g~viG~V~VG 110 (116)
T PF14827_consen 93 FAPVYDSD-GKVIGVVSVG 110 (116)
T ss_dssp EEEEE-TT-S-EEEEEEEE
T ss_pred EEeeECCC-CcEEEEEEEE
Confidence 35999754 8999999874
No 218
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.80 E-value=1.2e+02 Score=21.53 Aligned_cols=37 Identities=24% Similarity=0.421 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcC
Q 022005 10 MGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSG 51 (304)
Q Consensus 10 ~~~~~~~~~~~~ll~lsa~fs~~E~Al~s~~~~rl~~l~~~g 51 (304)
|+.|+.++++++ .++.|++-| ++-++|.--.++.++-
T Consensus 1 m~l~lail~ivl-~ll~G~~~G----~fiark~~~k~lk~NP 37 (71)
T COG3763 1 MSLWLAILLIVL-ALLAGLIGG----FFIARKQMKKQLKDNP 37 (71)
T ss_pred ChhHHHHHHHHH-HHHHHHHHH----HHHHHHHHHHHHhhCC
Confidence 356666644443 344555555 5555666666665543
No 219
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=29.07 E-value=74 Score=24.07 Aligned_cols=10 Identities=20% Similarity=0.119 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 022005 26 AGLMSGLTLG 35 (304)
Q Consensus 26 sa~fs~~E~A 35 (304)
+.++..+|.|
T Consensus 15 ~lLlisSeva 24 (95)
T PF07172_consen 15 ALLLISSEVA 24 (95)
T ss_pred HHHHHHhhhh
Confidence 3344444443
No 220
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=27.24 E-value=60 Score=21.62 Aligned_cols=18 Identities=22% Similarity=0.512 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022005 11 GFIIHIVVIVFLVMFAGLMS 30 (304)
Q Consensus 11 ~~~~~~~~~~~ll~lsa~fs 30 (304)
.+|+++.+ +.+++||+.+
T Consensus 2 PwWvY~vi--~gI~~S~ym~ 19 (52)
T PF14147_consen 2 PWWVYFVI--AGIIFSGYMA 19 (52)
T ss_pred cchHHHHH--HHHHHHHHHH
Confidence 46776654 4456677754
No 221
>PF10853 DUF2650: Protein of unknown function (DUF2650); InterPro: IPR022559 This region is found in proteins with unknown function in metazoa.
Probab=25.63 E-value=58 Score=20.29 Aligned_cols=19 Identities=26% Similarity=0.732 Sum_probs=10.8
Q ss_pred cccccccC---------hHHHHHHHHHH
Q 022005 2 AVEYSCCG---------MGFIIHIVVIV 20 (304)
Q Consensus 2 ~~~~~~~~---------~~~~~~~~~~~ 20 (304)
...|.||| .+.|+.+++++
T Consensus 7 f~yy~CCg~~~~eCCf~lq~Wv~v~l~v 34 (38)
T PF10853_consen 7 FHYYKCCGDLNKECCFRLQIWVIVLLAV 34 (38)
T ss_pred eEEEECCCCChHhHHHHHHHHHHHHHHH
Confidence 34566776 45676655443
No 222
>PRK03972 ribosomal biogenesis protein; Validated
Probab=24.33 E-value=93 Score=27.13 Aligned_cols=35 Identities=11% Similarity=0.244 Sum_probs=30.2
Q ss_pred CCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEe
Q 022005 222 NAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257 (304)
Q Consensus 222 ~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~ 257 (304)
..+++ ++.+...+.+++.+.|++++.|++-|++..
T Consensus 35 k~~lk-el~~~A~~~g~TdLIVV~E~rg~P~~L~i~ 69 (208)
T PRK03972 35 KKTIQ-DLLMEAYDRGYERLLIINVWKGNPLKMTFI 69 (208)
T ss_pred CccHH-HHHHHHHHCCCCeEEEEecCCCcCCeEEEE
Confidence 46787 899999999999999999988888887655
No 223
>PHA00728 hypothetical protein
Probab=24.07 E-value=59 Score=25.66 Aligned_cols=54 Identities=19% Similarity=0.339 Sum_probs=40.8
Q ss_pred ChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeC
Q 022005 188 THDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYE 246 (304)
Q Consensus 188 ~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~ 246 (304)
++++-+-|+|-....++.+++...|++.+++++-++- + -++....+.|+|.|=+
T Consensus 35 ~~e~lqEiEnPYTVTNRaIsElV~PkDTMfYLsgnqi-s----LILtAfEfarLP~YFg 88 (151)
T PHA00728 35 EDEELQEIENPYTVTNRAISELVEPKDTMFYLSGNQI-S----LILTAFEFARLPAYFG 88 (151)
T ss_pred hhhhHHHhcCCceehhHHHHHhcCCccceEEecCCch-h----hHHHHHHHhhchhhhC
Confidence 4455677889999999999999999999999886542 2 1233557888888854
No 224
>PF15284 PAGK: Phage-encoded virulence factor
Probab=23.42 E-value=1.4e+02 Score=20.58 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 022005 15 HIVVIVFLVMFAGLMSGLTLGLMSM 39 (304)
Q Consensus 15 ~~~~~~~ll~lsa~fs~~E~Al~s~ 39 (304)
.+++.+++++.++.||++-+|--+.
T Consensus 6 sifL~l~~~LsA~~FSasamAa~~~ 30 (61)
T PF15284_consen 6 SIFLALVFILSAAGFSASAMAADSS 30 (61)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhhC
Confidence 4566677788888999987775433
No 225
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=22.90 E-value=68 Score=26.87 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=30.6
Q ss_pred ccccccccccc-ccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechh
Q 022005 201 LTEKTASDAMT-PIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNL 260 (304)
Q Consensus 201 l~~~~V~diMt-pr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDl 260 (304)
+...+++|+|. ..-++..++.+--+. -.+-....++...| |-++.+|+|||++-.|--
T Consensus 4 iR~ar~~DL~~mQ~~Nl~~lpENyqmk-yylyh~lswp~lSy-VA~D~~gkiVGYvlAkme 62 (193)
T KOG3235|consen 4 IRRARPDDLLEMQHCNLLNLPENYQMK-YYLYHGLSWPQLSY-VAEDENGKIVGYVLAKME 62 (193)
T ss_pred cccCCHHHHHHhhhcccccCcHHHhHH-HHHHhhcccccceE-EEEcCCCcEEEEeeeehh
Confidence 44556777763 122443444433333 33333333333333 445556999999988754
No 226
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=21.46 E-value=3.8e+02 Score=21.54 Aligned_cols=13 Identities=15% Similarity=0.677 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 022005 11 GFIIHIVVIVFLV 23 (304)
Q Consensus 11 ~~~~~~~~~~~ll 23 (304)
++|+.++++++++
T Consensus 22 GWwll~~lll~~~ 34 (146)
T PF14316_consen 22 GWWLLLALLLLLL 34 (146)
T ss_pred HHHHHHHHHHHHH
Confidence 4455544444433
No 227
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=20.70 E-value=2.3e+02 Score=24.82 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=21.7
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022005 8 CGMGFIIHIVVIVFLVMFAGLMSGLTLGL 36 (304)
Q Consensus 8 ~~~~~~~~~~~~~~ll~lsa~fs~~E~Al 36 (304)
++|-..+.+++|.+|+++..+.-.+..++
T Consensus 126 ~K~amLIClIIIAVLfLICT~LfLSTVVL 154 (227)
T PF05399_consen 126 NKMAMLICLIIIAVLFLICTLLFLSTVVL 154 (227)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888888888888877776555
Done!