Query 022006
Match_columns 304
No_of_seqs 142 out of 215
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 07:18:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05153 DUF706: Family of unk 100.0 3E-144 7E-149 990.7 12.1 251 52-304 3-253 (253)
2 KOG1573 Aldehyde reductase [Ge 100.0 4.8E-96 1E-100 645.5 10.9 191 28-221 12-204 (204)
3 TIGR03276 Phn-HD phosphonate d 97.0 0.00082 1.8E-08 60.6 4.4 145 90-289 4-174 (179)
4 smart00471 HDc Metal dependent 95.7 0.009 2E-07 44.5 2.8 80 110-243 3-91 (124)
5 TIGR00277 HDIG uncharacterized 94.2 0.063 1.4E-06 38.7 3.6 29 209-239 49-77 (80)
6 TIGR00488 putative HD superfam 92.9 0.058 1.2E-06 46.1 1.8 37 110-146 7-47 (158)
7 PF01966 HD: HD domain; Inter 92.6 0.033 7.2E-07 42.3 -0.0 35 113-147 2-42 (122)
8 COG4341 Predicted HD phosphohy 92.0 0.085 1.8E-06 48.1 1.7 104 102-267 21-124 (186)
9 PRK00106 hypothetical protein; 91.1 0.57 1.2E-05 48.7 6.8 87 91-240 332-422 (535)
10 PF08668 HDOD: HDOD domain; I 89.2 0.46 1E-05 40.8 3.7 127 80-240 47-194 (196)
11 TIGR01596 cas3_HD CRISPR-assoc 89.1 0.15 3.2E-06 42.6 0.6 34 113-146 2-47 (177)
12 TIGR03319 YmdA_YtgF conserved 88.3 1.3 2.8E-05 45.6 6.8 88 91-241 311-402 (514)
13 cd00077 HDc Metal dependent ph 87.0 0.26 5.6E-06 37.1 0.7 34 207-240 54-92 (145)
14 COG2316 Predicted hydrolase (H 85.2 0.81 1.8E-05 42.3 3.1 55 86-146 28-86 (212)
15 TIGR00295 conserved hypothetic 82.8 2.8 6E-05 36.5 5.3 30 211-242 61-90 (164)
16 PRK12705 hypothetical protein; 80.6 4 8.7E-05 42.4 6.3 93 91-247 305-401 (508)
17 TIGR02621 cas3_GSU0051 CRISPR- 75.9 1.7 3.8E-05 47.5 2.3 36 111-146 675-716 (844)
18 COG1639 Predicted signal trans 75.1 3.1 6.6E-05 40.5 3.5 131 77-241 66-217 (289)
19 PRK12703 tRNA 2'-O-methylase; 69.1 5.7 0.00012 39.3 3.9 91 81-241 163-258 (339)
20 PRK10885 cca multifunctional t 64.8 3.5 7.6E-05 41.1 1.5 36 110-146 226-261 (409)
21 PRK07152 nadD putative nicotin 62.9 4.3 9.4E-05 39.0 1.7 29 211-240 258-287 (342)
22 COG1505 Serine proteases of th 60.5 5.4 0.00012 42.6 2.0 137 121-273 414-573 (648)
23 COG2206 c-di-GMP phosphodieste 59.9 6.1 0.00013 38.1 2.1 51 93-147 133-191 (344)
24 PRK03381 PII uridylyl-transfer 58.4 15 0.00034 39.5 5.0 35 110-144 419-456 (774)
25 COG3481 Predicted HD-superfami 57.2 9.7 0.00021 37.1 3.0 89 115-250 148-238 (287)
26 TIGR03760 ICE_TraI_Pfluor inte 53.5 9 0.00019 35.5 2.0 15 133-147 108-122 (218)
27 PRK12704 phosphodiesterase; Pr 51.3 17 0.00038 37.6 3.9 87 91-240 317-407 (520)
28 PRK13480 3'-5' exoribonuclease 49.1 9.8 0.00021 37.1 1.6 33 116-148 167-201 (314)
29 PF13328 HD_4: HD domain; PDB: 46.6 17 0.00038 30.7 2.6 48 94-142 2-49 (153)
30 PF15608 PELOTA_1: PELOTA RNA 45.8 43 0.00094 28.2 4.7 55 64-122 16-78 (100)
31 PRK05092 PII uridylyl-transfer 45.1 12 0.00025 41.1 1.6 32 113-144 495-544 (931)
32 KOG4481 Uncharacterized conser 44.4 21 0.00046 33.1 2.9 34 83-127 112-145 (194)
33 COG4820 EutJ Ethanolamine util 42.2 12 0.00027 35.8 1.1 79 117-200 187-271 (277)
34 PRK00275 glnD PII uridylyl-tra 41.3 15 0.00032 40.3 1.7 35 110-144 459-511 (895)
35 PRK05007 PII uridylyl-transfer 40.6 48 0.001 36.4 5.4 35 110-144 460-512 (884)
36 PRK04374 PII uridylyl-transfer 38.7 23 0.00051 38.8 2.7 35 110-144 448-500 (869)
37 PF06784 UPF0240: Uncharacteri 37.9 28 0.00062 31.5 2.7 35 83-128 113-147 (179)
38 PRK00227 glnD PII uridylyl-tra 37.3 53 0.0012 35.5 5.0 37 110-146 379-418 (693)
39 PRK01759 glnD PII uridylyl-tra 37.2 20 0.00043 39.1 1.8 35 110-144 435-487 (854)
40 PTZ00100 DnaJ chaperone protei 36.2 1.1E+02 0.0023 26.3 5.7 53 71-130 41-97 (116)
41 COG1418 Predicted HD superfami 35.5 41 0.00089 31.1 3.4 38 111-148 36-77 (222)
42 PRK08071 L-aspartate oxidase; 34.5 45 0.00098 33.8 3.8 72 73-145 415-507 (510)
43 PRK03059 PII uridylyl-transfer 34.5 27 0.00059 38.1 2.4 34 111-144 440-491 (856)
44 PF00307 CH: Calponin homology 34.3 68 0.0015 24.5 3.9 43 259-303 2-47 (108)
45 TIGR02692 tRNA_CCA_actino tRNA 34.2 33 0.0007 34.6 2.7 38 110-147 257-296 (466)
46 TIGR03401 cyanamide_fam HD dom 33.3 32 0.0007 32.0 2.3 38 108-145 55-97 (228)
47 PF07514 TraI_2: Putative heli 32.2 18 0.00039 35.3 0.5 36 112-147 67-121 (327)
48 KOG2155 Tubulin-tyrosine ligas 31.9 26 0.00056 36.9 1.6 18 120-137 373-390 (631)
49 COG3437 Response regulator con 31.2 72 0.0016 32.3 4.5 111 90-249 168-291 (360)
50 PRK13298 tRNA CCA-pyrophosphor 30.5 43 0.00094 34.1 2.9 35 111-146 228-262 (417)
51 COG1023 Gnd Predicted 6-phosph 30.5 67 0.0015 31.7 4.0 62 86-160 178-251 (300)
52 TIGR01693 UTase_glnD [Protein- 28.4 20 0.00044 38.7 0.2 16 129-144 464-479 (850)
53 PF12477 TraW_N: Sex factor F 28.4 20 0.00044 24.2 0.1 12 156-167 20-31 (31)
54 KOG0668 Casein kinase II, alph 27.9 33 0.00071 33.9 1.4 118 155-295 208-330 (338)
55 TIGR02578 cas_TM1811_Csm1 CRIS 27.9 22 0.00047 37.9 0.3 14 134-147 2-15 (648)
56 COG0647 NagD Predicted sugar p 26.4 1.8E+02 0.0038 28.0 6.1 97 84-203 48-171 (269)
57 TIGR01346 isocit_lyase isocitr 25.1 57 0.0012 34.5 2.7 40 107-146 386-441 (527)
58 PF05964 FYRN: F/Y-rich N-term 24.5 29 0.00062 25.4 0.3 26 138-168 5-30 (54)
59 COG1713 Predicted HD superfami 24.3 60 0.0013 30.0 2.4 37 110-146 16-56 (187)
60 PRK14064 exodeoxyribonuclease 23.6 1.4E+02 0.0031 23.5 4.1 42 85-126 3-45 (75)
61 TIGR00691 spoT_relA (p)ppGpp s 23.0 75 0.0016 34.1 3.2 34 108-142 16-49 (683)
62 PF03656 Pam16: Pam16; InterP 22.7 30 0.00065 29.9 0.2 32 86-119 53-85 (127)
63 smart00735 ZM ZASP-like motif. 21.1 52 0.0011 21.0 1.0 15 189-203 5-19 (26)
64 PRK10119 putative hydrolase; P 20.6 1.5E+02 0.0032 27.9 4.2 47 97-143 14-61 (231)
65 PF04572 Gb3_synth: Alpha 1,4- 20.3 94 0.002 26.3 2.7 66 233-301 58-127 (135)
66 PF04986 Y2_Tnp: Putative tran 20.2 27 0.0006 31.0 -0.6 33 207-243 145-177 (183)
No 1
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=100.00 E-value=3.4e-144 Score=990.73 Aligned_cols=251 Identities=69% Similarity=1.202 Sum_probs=201.5
Q ss_pred hhhHHHHHHHHHhhhcchHHHHHHHHHHhcCCCCccccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCC
Q 022006 52 ERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDED 131 (304)
Q Consensus 52 ~r~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~eA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pd 131 (304)
+|++||++|||+||++||||||++||++|++++|++|||||||++||+||||||||+|+|||+||||||||||+|||+||
T Consensus 3 ~~~~~V~~~Y~~~h~~QTv~fv~~~~~~~~~~~~~~Mti~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~~~d 82 (253)
T PF05153_consen 3 EACDRVKEFYRLQHTNQTVDFVKKMRAKYLKFDHAEMTIWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHPDPD 82 (253)
T ss_dssp --HHHHHHHHHHHHCC--HHHHHHHHHHHTT--SEEE-HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHSTT-H
T ss_pred cHhHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCcceeeHHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCCCcc
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcccccccccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCcccccccc
Q 022006 132 WLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSW 211 (304)
Q Consensus 132 W~qLtGliHDLGKvl~l~~~~~~pQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSW 211 (304)
|||||||||||||||++ ||++|||+||||||||||+|+++|||+++|++|||.+||+||||+|||+||||||||+|||
T Consensus 83 W~~LtGLiHDLGKvl~~--~~~e~QW~vvGDTfpVGC~f~~~iv~~e~f~~NpD~~~~~YnTk~GiY~~~CGLdnv~msW 160 (253)
T PF05153_consen 83 WMQLTGLIHDLGKVLAL--FGGEPQWAVVGDTFPVGCAFSESIVFPEFFKDNPDSKNPRYNTKYGIYEPNCGLDNVMMSW 160 (253)
T ss_dssp HHHHHHHHTTGGGHHHH--C-T--GGGTSS---BSSS---TTSTTCCC-TT-GGGCSTTTSSSSTT--TT--GGGS-B-S
T ss_pred hhhheehhccchhhhhh--hcCCCCceeecCceeEecccCccccChhhHhhCCCCCCccccCCCCccCCCCCccceeecC
Confidence 99999999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHhCCCCCChhhHHHhHhcccccccccccccccCChhhHHHHHHHHHcCCccceecCCCCCChhhhhhhhH
Q 022006 212 GHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVKPYYL 291 (304)
Q Consensus 212 GHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~~D~~~l~wv~~Fn~yDLYSKs~~~pdve~lkPYY~ 291 (304)
|||||||+|||+|+||||+|||+|||||||||||++|+|+||||++|.+||+||++||||||||||+++||||+|||||+
T Consensus 161 gHDEYlY~Vlk~n~~tLP~eaL~mIRyhSfypwH~~~~Y~~L~~~~D~~~l~wv~~Fn~~dLYSK~~~~pdve~l~PYY~ 240 (253)
T PF05153_consen 161 GHDEYLYQVLKHNKSTLPEEALYMIRYHSFYPWHREGAYDHLMNEEDEEMLKWVKEFNKYDLYSKSDEPPDVEELKPYYQ 240 (253)
T ss_dssp SHHHHHHHHHHHCT----HHHHHHHHHTT-HHHHTTS--TTT--HHHHHHHHHHHHHHHHHHHT--SS---HCCCHHHHH
T ss_pred CchHHHHHHHHcccCccCHHHHHHHHHhccccccccchhhHhhccCcHHHHHHHHHhCCcceeeCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCC
Q 022006 292 SLIEKYFPAKLKW 304 (304)
Q Consensus 292 ~LIdKY~P~~l~W 304 (304)
+|||||||++|+|
T Consensus 241 ~LidKy~P~~l~W 253 (253)
T PF05153_consen 241 SLIDKYFPGKLKW 253 (253)
T ss_dssp HHHHHHS-S-EEE
T ss_pred HHHHHHCCCcCCC
Confidence 9999999999998
No 2
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=100.00 E-value=4.8e-96 Score=645.52 Aligned_cols=191 Identities=73% Similarity=1.293 Sum_probs=184.6
Q ss_pred ecCCCCCCCCccccccCCCccc-cchhhHHHHHHHHHhhhcchHHHHHHHHHHhcCCCCccccHHHHHHHHhhhhcCCCC
Q 022006 28 LDGGFLVPQTNSFGHTFRDYDA-EGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDP 106 (304)
Q Consensus 28 ~d~~f~~p~~~~~~~~fR~Y~~-~~~r~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~eA~e~Ln~lvDeSDP 106 (304)
.|--|..|++++++.+||+|++ +++|++||+.|||.||+|||||||++||++|+||++.+||||||||+||++||||||
T Consensus 12 v~e~~~~pe~~a~g~~fRdY~dt~~p~q~rV~~~Y~~qH~~QTvDFVk~mr~~~gkf~~~kM~i~ec~ell~~~vDESDP 91 (204)
T KOG1573|consen 12 VDEPFVAPEVNADGRQFRDYDDTEDPLQKRVRTTYRTQHTNQTVDFVKKMRAEYGKFDKMKMTIWECCELLNEVVDESDP 91 (204)
T ss_pred ccCCCCChhhhcchhhhccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcccchhheeHHHHHHHHHhhhcccCC
Confidence 3455899999999999999965 788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHhhCCCCCchhhhhhhhcccccccccCCCCCCCceeecCceeeecccCCCcccc-cccccCCC
Q 022006 107 DLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHH-KYFKENPD 185 (304)
Q Consensus 107 D~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDLGKvl~l~~~~~~pQW~vvGDTfpVGC~f~~~iv~~-e~F~~NPD 185 (304)
|+|+|||+|||||||+||++||+.||||||||||||||||. |||+||||||||||||||+|+.||||. ++|..|||
T Consensus 92 DlDepni~Ha~QtAE~iR~~~Pd~dWlHLtaLiHDLGKvl~---f~GepQWAVvGDTfpVGC~~~~s~V~~d~~F~~NpD 168 (204)
T KOG1573|consen 92 DLDEPNIQHALQTAEAIRKDYPDEDWLHLTALIHDLGKVLA---FGGEPQWAVVGDTFPVGCAFDASNVHHDKYFDGNPD 168 (204)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH---hcCCcceeeecCcccccccccccceechhhccCCCC
Confidence 99999999999999999999999999999999999999995 589999999999999999999999996 99999999
Q ss_pred CCCCCCCCCCCcccCCCCccccccccCchhhHHHHH
Q 022006 186 YSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVA 221 (304)
Q Consensus 186 ~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vl 221 (304)
.+||+|||+.|||+|+||||||+||||||||||+|+
T Consensus 169 ~~np~YnT~~GiYqe~CGldnvlMsWgHDeYMY~V~ 204 (204)
T KOG1573|consen 169 INNPKYNTKLGIYQEGCGLDNVLMSWGHDEYMYLVA 204 (204)
T ss_pred CCCcccccccccccCCCChhHHHhhcccccceeecC
Confidence 999999999999999999999999999999999984
No 3
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=97.00 E-value=0.00082 Score=60.56 Aligned_cols=145 Identities=19% Similarity=0.220 Sum_probs=91.4
Q ss_pred HHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCCchhhhhhhhcccccccccCCCCCCCceeecCceeeecc
Q 022006 90 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCA 169 (304)
Q Consensus 90 I~eA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDLGKvl~l~~~~~~pQW~vvGDTfpVGC~ 169 (304)
|-+-..++.......----..+|++|+||||...+++ |-.+=+.+.+|+||+|.++.- .+ ++
T Consensus 4 ~~~i~~l~~~~g~~~y~Ge~Vs~leH~LQ~A~lA~~~-Gad~elvvAALLHDIGhll~~--~~---------~~------ 65 (179)
T TIGR03276 4 LDEIFALFDEHGARQYGGEAVSQLEHALQCAQLAEAA-GADDELIVAAFLHDIGHLLAD--EG---------AT------ 65 (179)
T ss_pred HHHHHHHHHhcCccccCCCCCcHHHHHHHHHHHHHHc-CCCHHHHHHHHHHhcchhhhc--cc---------cc------
Confidence 3334444444444332235699999999999999998 766667999999999998732 11 11
Q ss_pred cCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHHhCCCCCChhhHHHhHhcc----ccccc
Q 022006 170 FDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHS----FYALH 245 (304)
Q Consensus 170 f~~~iv~~e~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHS----FYpwH 245 (304)
.+..|+ .+.|++.==..|+. .+|++...+||.|. ++---
T Consensus 66 ----------------------~~~~g~------------~~~He~iga~~Lr~---~F~~~V~~lV~~Hv~aKryl~a~ 108 (179)
T TIGR03276 66 ----------------------PMGRGG------------DDHHEELAADYLRE---LFSPSVTEPIRLHVQAKRYLCAV 108 (179)
T ss_pred ----------------------ccccCC------------CccHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHHHcc
Confidence 111222 23588888888886 39999999999986 22111
Q ss_pred cccccccc--------------CChhhHHHHH------HHHHcCCccceecCCC--CCChhhhhhh
Q 022006 246 KSEAYKHL--------------MNEEDVENLK------WLETFSKYDLYSKSKV--RIDVEKVKPY 289 (304)
Q Consensus 246 ~~gaY~hL--------------~n~~D~~~l~------wv~~Fn~yDLYSKs~~--~pdve~lkPY 289 (304)
..+-|.+| |+++..+-++ -.-.|-+||==+|.+. .|+++..+|.
T Consensus 109 ~p~Y~~~LS~aS~~sL~~QGG~~~~~e~~~f~~~p~~~dav~lR~wDd~ak~~~~~~~~l~~~~~~ 174 (179)
T TIGR03276 109 DPAYAESLSPASRRSLELQGGPFTAAEADAFERDPHAADAIRLRRWDDLAKDPGVPTPDLDHFMPL 174 (179)
T ss_pred ChHHHHHcCHHHHhHHHHcCCCCCHHHHHHHHhCccHHHHHHHHHcchhccCCCCCCCCHHHHHHH
Confidence 12233456 6666554332 2223678888888877 4666654443
No 4
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=95.71 E-value=0.009 Score=44.47 Aligned_cols=80 Identities=25% Similarity=0.118 Sum_probs=53.1
Q ss_pred chHHHHHHHHHHHHHhh---CC--CCCchhhhhhhhcccccccccCCCCCCCceeecCceeeecccCCCcccccccccCC
Q 022006 110 EPQIEHLLQTAEAIRKD---YP--DEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENP 184 (304)
Q Consensus 110 l~qi~H~lQTAEaiR~d---~p--~pdW~qLtGliHDLGKvl~l~~~~~~pQW~vvGDTfpVGC~f~~~iv~~e~F~~NP 184 (304)
.+.++|.+++|..++.- .+ +.+.+-++||+||+||......+....+
T Consensus 3 ~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~~~~~~~~~~~---------------------------- 54 (124)
T smart00471 3 YHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPGTPDSFLVKTS---------------------------- 54 (124)
T ss_pred chHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCccCCHHHhcCcc----------------------------
Confidence 45678888887776533 11 4577889999999999884311100000
Q ss_pred CCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHHhCCCCCChhhHHH----hHhccccc
Q 022006 185 DYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFI----IRYHSFYA 243 (304)
Q Consensus 185 D~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~m----IRyHSFYp 243 (304)
.-.+|...-..+++. ..+|++...+ |++|.+-.
T Consensus 55 ------------------------~~~~h~~~~~~~~~~--~~~~~~~~~~~~~~i~~h~~~~ 91 (124)
T smart00471 55 ------------------------VLEDHHFIGAEILLE--EEEPRILEEILATAILSHHERP 91 (124)
T ss_pred ------------------------HHHHhHHHHHHHHHh--CCCCHHHHHHHhhHHHHhcccc
Confidence 335788888888876 4678777766 99997643
No 5
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=94.20 E-value=0.063 Score=38.67 Aligned_cols=29 Identities=21% Similarity=0.085 Sum_probs=23.6
Q ss_pred cccCchhhHHHHHHhCCCCCChhhHHHhHhc
Q 022006 209 MSWGHDDYMYLVAKENKTTLPSAALFIIRYH 239 (304)
Q Consensus 209 mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyH 239 (304)
...+|.+.=..+++. ..+|++...+||+|
T Consensus 49 ~~~~H~~~g~~~l~~--~~~~~~~~~~I~~H 77 (80)
T TIGR00277 49 IFESHAVVGAEIARK--YGEPLEVIDIIAEH 77 (80)
T ss_pred HHHchHHHHHHHHHH--cCCCHHHHHHHHHH
Confidence 345788877888875 47999999999998
No 6
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=92.93 E-value=0.058 Score=46.06 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHHHh----hCCCCCchhhhhhhhcccccc
Q 022006 110 EPQIEHLLQTAEAIRK----DYPDEDWLHLTGLIHDLGKVL 146 (304)
Q Consensus 110 l~qi~H~lQTAEaiR~----d~p~pdW~qLtGliHDLGKvl 146 (304)
..-.+|.+.+|...|+ -.++++...++||+||+||.+
T Consensus 7 ~~r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk~~ 47 (158)
T TIGR00488 7 EHRYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAKFL 47 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhccC
Confidence 3557899988876543 226789999999999999953
No 7
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=92.65 E-value=0.033 Score=42.31 Aligned_cols=35 Identities=34% Similarity=0.610 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHH---hhCC---CCCchhhhhhhhccccccc
Q 022006 113 IEHLLQTAEAIR---KDYP---DEDWLHLTGLIHDLGKVLN 147 (304)
Q Consensus 113 i~H~lQTAEaiR---~d~p---~pdW~qLtGliHDLGKvl~ 147 (304)
++|.+.+|+.++ +..+ +.+++.++||+||+||...
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~~ 42 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIPT 42 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHST
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCCC
Confidence 467776665544 3334 6688999999999999983
No 8
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=91.96 E-value=0.085 Score=48.09 Aligned_cols=104 Identities=26% Similarity=0.345 Sum_probs=72.0
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHhhCCCCCchhhhhhhhcccccccccCCCCCCCceeecCceeeecccCCCcccccccc
Q 022006 102 DESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFK 181 (304)
Q Consensus 102 DeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDLGKvl~l~~~~~~pQW~vvGDTfpVGC~f~~~iv~~e~F~ 181 (304)
|++=----++|.+|+||+|-..-+| |-++=+.-..|+||+|-+..= +| +|..
T Consensus 21 ~e~y~ge~VTq~eHaLQ~AtlAerd-Ga~~~lVaaALLHDiGhl~~~--~g---------~~ps---------------- 72 (186)
T COG4341 21 DEGYSGEPVTQLEHALQCATLAERD-GADTALVAAALLHDIGHLYAD--YG---------HTPS---------------- 72 (186)
T ss_pred ccccccCcchhhhhHHHHhHHHHhc-CCcHHHHHHHHHHhHHHHhhh--cC---------CCcc----------------
Confidence 3333334578999999999999999 888877888999999999832 42 1211
Q ss_pred cCCCCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHHhCCCCCChhhHHHhHhcccccccccccccccCChhhHHH
Q 022006 182 ENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMNEEDVEN 261 (304)
Q Consensus 182 ~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~~D~~~ 261 (304)
.-|+|.- =|+|.==-||.. -.|+-.-.-||.|- |+=++||+ -|.+-
T Consensus 73 -------------------~~~i~d~----~hee~~~~vL~~---~f~~~v~e~vrlHv-------~akR~lca-~~p~Y 118 (186)
T COG4341 73 -------------------AAGIDDP----FHEEFATPVLRK---LFPPFVREPVRLHV-------GAKRYLCA-VDPAY 118 (186)
T ss_pred -------------------ccccchh----HHHHHhHHHHHH---hCcHHHHHHHHHHH-------hhhhhhhc-cChHH
Confidence 1233333 367777778866 47888888899885 77788888 55555
Q ss_pred HHHHHH
Q 022006 262 LKWLET 267 (304)
Q Consensus 262 l~wv~~ 267 (304)
..=+..
T Consensus 119 f~~ls~ 124 (186)
T COG4341 119 FDDLSP 124 (186)
T ss_pred HhhcCH
Confidence 443333
No 9
>PRK00106 hypothetical protein; Provisional
Probab=91.11 E-value=0.57 Score=48.71 Aligned_cols=87 Identities=13% Similarity=0.172 Sum_probs=63.5
Q ss_pred HHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHh---hC-CCCCchhhhhhhhcccccccccCCCCCCCceeecCceee
Q 022006 91 WECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK---DY-PDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPV 166 (304)
Q Consensus 91 ~eA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~---d~-p~pdW~qLtGliHDLGKvl~l~~~~~~pQW~vvGDTfpV 166 (304)
.|++.+|-.|-.-.+-+.. ...|.+.+|...+. .+ .++++.-++||+||+||++- .
T Consensus 332 ~e~~~~lg~l~~r~sy~qn--l~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK~v~-----~------------- 391 (535)
T PRK00106 332 PDLIKIMGRLQFRTSYGQN--VLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGKAID-----R------------- 391 (535)
T ss_pred HHHHHHHHHHhhhccCCCc--HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCccC-----c-------------
Confidence 4788888877544433332 47999999887542 22 46789999999999999851 0
Q ss_pred ecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHHhCCCCCChhhHHHhHhcc
Q 022006 167 GCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHS 240 (304)
Q Consensus 167 GC~f~~~iv~~e~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHS 240 (304)
.. ..+|.+.=+.+++.. .+|++-+.+|++|-
T Consensus 392 ---------------------------------e~--------~g~Ha~iGa~ll~~~--~~~~~v~~aI~~HH 422 (535)
T PRK00106 392 ---------------------------------EV--------EGSHVEIGMEFARKY--KEHPVVVNTIASHH 422 (535)
T ss_pred ---------------------------------cc--------cCChHHHHHHHHHHc--CCCHHHHHHHHHhC
Confidence 00 115889999999865 48999999999985
No 10
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=89.19 E-value=0.46 Score=40.78 Aligned_cols=127 Identities=24% Similarity=0.316 Sum_probs=72.6
Q ss_pred hcCCCCccccHHHHHHHH--------------hhhhcCCC-CCCCc-hHHHHHHHHHHHHHhh-----CCCCCchhhhhh
Q 022006 80 YGKLNRVEMSIWECCELL--------------NDVVDESD-PDLDE-PQIEHLLQTAEAIRKD-----YPDEDWLHLTGL 138 (304)
Q Consensus 80 ~~~~~~~~MsI~eA~e~L--------------n~lvDeSD-PD~dl-~qi~H~lQTAEaiR~d-----~p~pdW~qLtGl 138 (304)
+.++.+.--||.+|+-.| ...+..+. ....+ .-..|.+.+|..+++- ..+||-.-++||
T Consensus 47 ~~~~~~~i~sl~~Ai~~LG~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~a~~la~~~~~~~~~~a~~~gL 126 (196)
T PF08668_consen 47 YFGLRRPISSLEQAISRLGLDRIRNLALALSLRSLFPSSPPYQFNLERFWRHSLAAAAIARRLARELGFDDPDEAYLAGL 126 (196)
T ss_dssp TTTSTST--SHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCTTSCHHHHHHHHHHHHHHHHHHHHHCTCCHHHHHHHHHH
T ss_pred hcCCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHHHccccchhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 334556667999999877 12222222 11222 3348999988887632 234588999999
Q ss_pred hhcccccccccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHH
Q 022006 139 IHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMY 218 (304)
Q Consensus 139 iHDLGKvl~l~~~~~~pQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY 218 (304)
+||+|+++++..+ |++ |--++. ..+.++- +. =-.++-.+.+.|.|==.
T Consensus 127 L~~iG~l~l~~~~---~~~------~~~~~~---------~~~~~~~---~~-----------~~~e~~~~g~~h~~lg~ 174 (196)
T PF08668_consen 127 LHDIGKLLLLSLF---PEY------YEEILQ---------EVKQEPE---SR-----------EEAERELFGVTHAELGA 174 (196)
T ss_dssp HTTHHHHHHHHHC---HHH------HHHHHH---------HHHHHCT---HH-----------HHHHHHHHSSHHHHHHH
T ss_pred HHHHhHHHHHHHh---HHH------HHHHHH---------HHHcCCC---CH-----------HHHHHHHHcCCHHHHHH
Confidence 9999999976222 111 110000 0000000 00 12344566677888888
Q ss_pred HHHHhCCCCCChhhHHHhHhcc
Q 022006 219 LVAKENKTTLPSAALFIIRYHS 240 (304)
Q Consensus 219 ~Vlk~n~stLP~eaL~mIRyHS 240 (304)
.+++.- .||++-...||+|-
T Consensus 175 ~l~~~W--~lP~~i~~~i~~hh 194 (196)
T PF08668_consen 175 ALLRKW--GLPEEIVEAIRHHH 194 (196)
T ss_dssp HHHHHT--T--HHHHHHHHHTT
T ss_pred HHHHHc--CCCHHHHHHHHHHh
Confidence 888874 89999999999984
No 11
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=89.14 E-value=0.15 Score=42.64 Aligned_cols=34 Identities=38% Similarity=0.500 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHh----------hCC--CCCchhhhhhhhcccccc
Q 022006 113 IEHLLQTAEAIRK----------DYP--DEDWLHLTGLIHDLGKVL 146 (304)
Q Consensus 113 i~H~lQTAEaiR~----------d~p--~pdW~qLtGliHDLGKvl 146 (304)
.+|++.||+..+. ..| .++++-+.|++||+||+-
T Consensus 2 ~~H~~~v~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~lHDiGK~~ 47 (177)
T TIGR01596 2 NEHLLDVAAVAEKLKNLDIVIADLIGKLLRELLDLLALLHDIGKIN 47 (177)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHhhHHHHHHHHHHHHccCccCC
Confidence 3677777776553 223 368999999999999976
No 12
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=88.31 E-value=1.3 Score=45.56 Aligned_cols=88 Identities=20% Similarity=0.170 Sum_probs=60.0
Q ss_pred HHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHh----hCCCCCchhhhhhhhcccccccccCCCCCCCceeecCceee
Q 022006 91 WECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK----DYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPV 166 (304)
Q Consensus 91 ~eA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~----d~p~pdW~qLtGliHDLGKvl~l~~~~~~pQW~vvGDTfpV 166 (304)
.+++.+|..|---+....+ ...|.+.+|...+. --.+++...+.||+||+||++. +
T Consensus 311 ~~~~~~l~~l~~r~~~~~~--~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIGK~~~---------~--------- 370 (514)
T TIGR03319 311 PELIKLLGRLKFRTSYGQN--VLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGKAVD---------H--------- 370 (514)
T ss_pred HHHHHHHHHhhccccCCcc--HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCcccc---------h---------
Confidence 4677777775333222222 46799888776442 2256788889999999999740 0
Q ss_pred ecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHHhCCCCCChhhHHHhHhccc
Q 022006 167 GCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSF 241 (304)
Q Consensus 167 GC~f~~~iv~~e~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSF 241 (304)
+ + -.+|.++=+.+++. ..+|++...+|++|.-
T Consensus 371 -----------e------------------~------------~~~H~~~Ga~ll~~--~~~~~~V~~aI~~HH~ 402 (514)
T TIGR03319 371 -----------E------------------V------------EGSHVEIGAELAKK--YKESPEVVNAIAAHHG 402 (514)
T ss_pred -----------h------------------h------------cccHHHHHHHHHHH--cCCCHHHHHHHHHhCC
Confidence 0 0 02688888889976 4689999999999984
No 13
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=86.96 E-value=0.26 Score=37.06 Aligned_cols=34 Identities=12% Similarity=0.073 Sum_probs=23.0
Q ss_pred cccccCchhhHHHHHHh----CCCCCChhhHHHhH-hcc
Q 022006 207 VMMSWGHDDYMYLVAKE----NKTTLPSAALFIIR-YHS 240 (304)
Q Consensus 207 V~mSWGHDEYlY~Vlk~----n~stLP~eaL~mIR-yHS 240 (304)
....++|..+=+.+++. ....++.+....+. +|.
T Consensus 54 ~~~~~~h~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (145)
T cd00077 54 SELEKDHAIVGAEILRELLLEEVIKLIDELILAVDASHH 92 (145)
T ss_pred HHHHHhhHHHHHHHHHHhhhcccccccHHHHHHHHHHcc
Confidence 44678899999999864 45666766655555 443
No 14
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=85.16 E-value=0.81 Score=42.25 Aligned_cols=55 Identities=31% Similarity=0.432 Sum_probs=40.7
Q ss_pred ccccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHh---hCC-CCCchhhhhhhhcccccc
Q 022006 86 VEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK---DYP-DEDWLHLTGLIHDLGKVL 146 (304)
Q Consensus 86 ~~MsI~eA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~---d~p-~pdW~qLtGliHDLGKvl 146 (304)
+.||-.||+++|.+.|-+ .+.+.|++.++..+|. ..| |..=--++||+||+--=+
T Consensus 28 ~~i~r~ea~eLlk~hv~~------e~L~kHcla~eavMr~lARe~gEDEEkw~~~GlLHD~DYe~ 86 (212)
T COG2316 28 AAINRDEAYELLKEHVPS------ESLQKHCLAVEAVMRWLAREWGEDEEKWAVTGLLHDFDYEL 86 (212)
T ss_pred HhhcchHHHHHHHHhCCc------HHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhhhccHHh
Confidence 568889999999998854 6679999999998883 333 222235889999975433
No 15
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=82.78 E-value=2.8 Score=36.47 Aligned_cols=30 Identities=10% Similarity=-0.089 Sum_probs=24.5
Q ss_pred cCchhhHHHHHHhCCCCCChhhHHHhHhcccc
Q 022006 211 WGHDDYMYLVAKENKTTLPSAALFIIRYHSFY 242 (304)
Q Consensus 211 WGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFY 242 (304)
+.|.+.=|.+|+. ..+|++.+.+|+.|.+.
T Consensus 61 ~~H~~~G~~iL~~--~g~~~~i~~iI~~H~~~ 90 (164)
T TIGR00295 61 FEHFVKGAEILRK--EGVDEKIVRIAERHFGA 90 (164)
T ss_pred CCHHHHHHHHHHH--cCCCHHHHHHHHHHhCC
Confidence 3799999999986 47899999999988543
No 16
>PRK12705 hypothetical protein; Provisional
Probab=80.57 E-value=4 Score=42.36 Aligned_cols=93 Identities=18% Similarity=0.162 Sum_probs=60.4
Q ss_pred HHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhh----CCCCCchhhhhhhhcccccccccCCCCCCCceeecCceee
Q 022006 91 WECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKD----YPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPV 166 (304)
Q Consensus 91 ~eA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d----~p~pdW~qLtGliHDLGKvl~l~~~~~~pQW~vvGDTfpV 166 (304)
.+++..|-.|---+.+..+ .+.|.+.+|..++.- .-+++-...+||+||+||+.- +.
T Consensus 305 ~~li~~Lg~L~~R~sygqn--vl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK~ie---------~e-------- 365 (508)
T PRK12705 305 PGLVRLLGRLYFRTSYGQN--VLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGKSID---------RE-------- 365 (508)
T ss_pred HHHHHHHHHHhhcccCCch--HHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCcch---------hh--------
Confidence 3455555444222222222 579999988866522 234567778999999999630 00
Q ss_pred ecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHHhCCCCCChhhHHHhHhcccccccc
Q 022006 167 GCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHK 246 (304)
Q Consensus 167 GC~f~~~iv~~e~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~ 246 (304)
+.-.|.+.=+.+++.. .+|++...+|++|.- ||..
T Consensus 366 ------------------------------------------~~~~H~~iGaeLlkk~--~~p~~Vv~aI~~HHe-~~~~ 400 (508)
T PRK12705 366 ------------------------------------------SDGNHVEIGAELARKF--NEPDEVINAIASHHN-KVNP 400 (508)
T ss_pred ------------------------------------------hcccHHHHHHHHHHhc--CCCHHHHHHHHHhCC-CCCC
Confidence 0127888889999864 699999999999983 5543
Q ss_pred c
Q 022006 247 S 247 (304)
Q Consensus 247 ~ 247 (304)
.
T Consensus 401 ~ 401 (508)
T PRK12705 401 E 401 (508)
T ss_pred C
Confidence 3
No 17
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=75.86 E-value=1.7 Score=47.49 Aligned_cols=36 Identities=25% Similarity=0.285 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHH---hhCCCCCc---hhhhhhhhcccccc
Q 022006 111 PQIEHLLQTAEAIR---KDYPDEDW---LHLTGLIHDLGKVL 146 (304)
Q Consensus 111 ~qi~H~lQTAEaiR---~d~p~pdW---~qLtGliHDLGKvl 146 (304)
+.-+|+..+|+..+ +.+|-++| ..+.|+.|||||.-
T Consensus 675 ~L~eHl~~va~lA~~fa~~~gl~~~~~~~~laGllHDlGK~~ 716 (844)
T TIGR02621 675 ALSDHLDNVFEVAKNFVAKLGLGDLDKAVRQAARLHDLGKQR 716 (844)
T ss_pred EHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccccCC
Confidence 34589988888776 55688888 57999999999976
No 18
>COG1639 Predicted signal transduction protein [Signal transduction mechanisms]
Probab=75.10 E-value=3.1 Score=40.51 Aligned_cols=131 Identities=21% Similarity=0.239 Sum_probs=78.1
Q ss_pred HHHhcCCCCccccHHHHHHHH-----hhhhc-------CCCCCCCchHH----HHHHHHHHHHH---hhC--CCCCchhh
Q 022006 77 REEYGKLNRVEMSIWECCELL-----NDVVD-------ESDPDLDEPQI----EHLLQTAEAIR---KDY--PDEDWLHL 135 (304)
Q Consensus 77 ~~~~~~~~~~~MsI~eA~e~L-----n~lvD-------eSDPD~dl~qi----~H~lQTAEaiR---~d~--p~pdW~qL 135 (304)
-.-|..+.+.--||-||+..| -+||= -+.|+..--+. ++++.||-.++ ++. ++++=.-+
T Consensus 66 NS~yfg~~~~i~tl~~Ai~rLG~~~v~NLv~a~a~~~~~~~~~~~~~~~~~~w~~a~~~A~ia~~La~~~g~~~~~~~y~ 145 (289)
T COG1639 66 NSPYFGFPREITTLNEAIVRLGIGLVINLVLALAEQAIQSVNSSSAEDRQLFWDTAIETAMIAEGLARALGRADSDEAYT 145 (289)
T ss_pred cchhcCCCCccCcHHHHHHHHhHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHH
Confidence 345777888889999998866 12221 12232222222 45555554443 343 46677889
Q ss_pred hhhhhcccccccccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchh
Q 022006 136 TGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDD 215 (304)
Q Consensus 136 tGliHDLGKvl~l~~~~~~pQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDE 215 (304)
+||+|.+|+|+++..| |+|.-++ |. .-..|+|.... +|-.+--.+|-+
T Consensus 146 ~gLLh~lG~l~ll~~~---~~~~~~~------~~---------~~~~~~~~~~~--------------~~e~~~i~~h~~ 193 (289)
T COG1639 146 AGLLHNLGILVLLTDF---PDHCELL------DY---------LLALNNDELLA--------------LDEELGIFGHAS 193 (289)
T ss_pred HHHHHHccHHHHHHHh---HHHHHHH------HH---------HHHhccCcccc--------------hHHHhccccchH
Confidence 9999999999988444 4553332 22 22234443221 122222234778
Q ss_pred hHHHHHHhCCCCCChhhHHHhHhccc
Q 022006 216 YMYLVAKENKTTLPSAALFIIRYHSF 241 (304)
Q Consensus 216 YlY~Vlk~n~stLP~eaL~mIRyHSF 241 (304)
--+.+++.- .+|++-...||+|-=
T Consensus 194 Iga~llr~W--~fp~~l~e~i~~~~~ 217 (289)
T COG1639 194 IGAYLLRRW--NFPDDLIEAIRFHHN 217 (289)
T ss_pred HHHHHHHHc--CCCHHHHHHHHHhhc
Confidence 888888875 889999999999864
No 19
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=69.14 E-value=5.7 Score=39.32 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=63.2
Q ss_pred cCCCCccccHHHHHHHHhhh-hcCCCCCCCchHHHHHHHHHHHHH---hhCC-CCCchhhhhhhhcccccccccCCCCCC
Q 022006 81 GKLNRVEMSIWECCELLNDV-VDESDPDLDEPQIEHLLQTAEAIR---KDYP-DEDWLHLTGLIHDLGKVLNLPSFGGLP 155 (304)
Q Consensus 81 ~~~~~~~MsI~eA~e~Ln~l-vDeSDPD~dl~qi~H~lQTAEaiR---~d~p-~pdW~qLtGliHDLGKvl~l~~~~~~p 155 (304)
+|.....++.-||+++|... .++ ..+.|.++.|...+ +.++ +.+=+.+.||+||+||....
T Consensus 163 gk~v~~ip~~ee~l~Ll~k~~~~e-------~l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k~~------- 228 (339)
T PRK12703 163 GKLVKIIPDEDQCLDLLKKYGASD-------LLIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTKTN------- 228 (339)
T ss_pred cccccCCCCHHHHHHHHHHcCCCh-------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccccc-------
Confidence 44455678999999999987 322 24889887654433 3222 44555678999999996410
Q ss_pred CceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHHhCCCCCChhhHHH
Q 022006 156 QWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFI 235 (304)
Q Consensus 156 QW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~m 235 (304)
. ..|...=+++|+. ..+|++-+.+
T Consensus 229 -----------------------------~-------------------------~~H~~~Ga~iL~e--~G~~e~i~~i 252 (339)
T PRK12703 229 -----------------------------G-------------------------IDHAVAGAEILRK--ENIDDRVVSI 252 (339)
T ss_pred -----------------------------C-------------------------CCHHHHHHHHHHH--CCCCHHHHHH
Confidence 0 1477777889985 4778999999
Q ss_pred hHhccc
Q 022006 236 IRYHSF 241 (304)
Q Consensus 236 IRyHSF 241 (304)
|+.|.-
T Consensus 253 Ie~H~g 258 (339)
T PRK12703 253 VERHIG 258 (339)
T ss_pred HHHHhc
Confidence 999884
No 20
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=64.80 E-value=3.5 Score=41.13 Aligned_cols=36 Identities=28% Similarity=0.192 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHHHHhhCCCCCchhhhhhhhcccccc
Q 022006 110 EPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVL 146 (304)
Q Consensus 110 l~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDLGKvl 146 (304)
.+..+|.+.+-+.+.+- +...-+-++.|+||+||-.
T Consensus 226 ~dv~~Htl~~l~~~~~l-~~~l~lr~AaLlHDlGK~~ 261 (409)
T PRK10885 226 IDTGIHTLMVLDQAAKL-SPSLDVRFAALCHDLGKGL 261 (409)
T ss_pred CcHHHHHHHHHHHHHhc-CCCHHHHHHHHhccccCCC
Confidence 35578988888777654 4445688999999999965
No 21
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=62.85 E-value=4.3 Score=38.96 Aligned_cols=29 Identities=24% Similarity=0.063 Sum_probs=23.8
Q ss_pred cCchhhHHHHHHhCCCCCC-hhhHHHhHhcc
Q 022006 211 WGHDDYMYLVAKENKTTLP-SAALFIIRYHS 240 (304)
Q Consensus 211 WGHDEYlY~Vlk~n~stLP-~eaL~mIRyHS 240 (304)
..|.+.=+.++++. ..+| ++.+..||+|-
T Consensus 258 ~~H~~~Ga~ll~~~-~~~p~~~i~~aI~~Hh 287 (342)
T PRK07152 258 VLHQYVGALWLKHV-YGIDDEEILNAIRNHT 287 (342)
T ss_pred HHhHHHHHHHHHHH-cCCCcHHHHHHHHhcc
Confidence 36999999999862 4677 78999999987
No 22
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=60.52 E-value=5.4 Score=42.63 Aligned_cols=137 Identities=19% Similarity=0.291 Sum_probs=82.3
Q ss_pred HHHHhhCCCCCchhhhhhhhcccccccccCCC-CCCCceeecCceeeec----------------ccCCCcccccccccC
Q 022006 121 EAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFG-GLPQWAVVGDTFPVGC----------------AFDESIVHHKYFKEN 183 (304)
Q Consensus 121 EaiR~d~p~pdW~qLtGliHDLGKvl~l~~~~-~~pQW~vvGDTfpVGC----------------~f~~~iv~~e~F~~N 183 (304)
..+.+| +.|-|+.=-|= . .|-+.|.|- ..--|.=-|-+|++.| +.....||.+||+--
T Consensus 414 K~~~~d-~~pTll~aYGG---F-~vsltP~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVa 488 (648)
T COG1505 414 KGAKKD-ENPTLLYAYGG---F-NISLTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVA 488 (648)
T ss_pred cCCcCC-CCceEEEeccc---c-ccccCCccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHH
Confidence 445556 66666554331 0 122234442 2234766777887755 346788999999888
Q ss_pred CCCCCCCCCC--CCCcccC-CCCcc-ccccccCchhhHHHHHHhCCCCCChhhHHHhHhccccccccccc--ccccCChh
Q 022006 184 PDYSNPAFNT--EYGVYSE-GCGLD-NVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEA--YKHLMNEE 257 (304)
Q Consensus 184 PD~~~p~YnT--k~GiY~p-~CGLd-nV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~ga--Y~hL~n~~ 257 (304)
-|-....|.| +.||.-. |-||= -|.|. .+.|=+=-++-. -.-|.|||||-|++ |+ =.+-=|++
T Consensus 489 edLi~rgitspe~lgi~GgSNGGLLvg~alT-QrPelfgA~v~e------vPllDMlRYh~l~a----G~sW~~EYG~Pd 557 (648)
T COG1505 489 EDLIKRGITSPEKLGIQGGSNGGLLVGAALT-QRPELFGAAVCE------VPLLDMLRYHLLTA----GSSWIAEYGNPD 557 (648)
T ss_pred HHHHHhCCCCHHHhhhccCCCCceEEEeeec-cChhhhCceeec------cchhhhhhhccccc----chhhHhhcCCCC
Confidence 8877777766 5777754 44442 22222 334432222211 13589999999985 22 13334788
Q ss_pred hHHHHHHHHHcCCccc
Q 022006 258 DVENLKWLETFSKYDL 273 (304)
Q Consensus 258 D~~~l~wv~~Fn~yDL 273 (304)
|.+.++|+.++.||-=
T Consensus 558 ~P~d~~~l~~YSPy~n 573 (648)
T COG1505 558 DPEDRAFLLAYSPYHN 573 (648)
T ss_pred CHHHHHHHHhcCchhc
Confidence 8999999999999853
No 23
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=59.87 E-value=6.1 Score=38.13 Aligned_cols=51 Identities=27% Similarity=0.307 Sum_probs=33.9
Q ss_pred HHHHHhhh-hcCCCCCCCchHHHHHHHHHHHHH---hhCCCC----Cchhhhhhhhccccccc
Q 022006 93 CCELLNDV-VDESDPDLDEPQIEHLLQTAEAIR---KDYPDE----DWLHLTGLIHDLGKVLN 147 (304)
Q Consensus 93 A~e~Ln~l-vDeSDPD~dl~qi~H~lQTAEaiR---~d~p~p----dW~qLtGliHDLGKvl~ 147 (304)
....+... ++..|+.| ..|-..+|+-.+ +.-|-+ .++-+.|++||+||+-.
T Consensus 133 ~~~~~~~~~~~~kd~~t----~~Hs~~va~~a~~ia~~lgl~~~~i~~l~~aalLHDIGKi~i 191 (344)
T COG2206 133 ALVALARGDIKAKDDYT----YGHSVRVAELAEAIAKKLGLSEEKIEELALAGLLHDIGKIGI 191 (344)
T ss_pred HHHHHHHhcccccchhH----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccC
Confidence 33344444 77777777 678888776544 333433 35678999999999984
No 24
>PRK03381 PII uridylyl-transferase; Provisional
Probab=58.36 E-value=15 Score=39.49 Aligned_cols=35 Identities=34% Similarity=0.441 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHH---HhhCCCCCchhhhhhhhcccc
Q 022006 110 EPQIEHLLQTAEAI---RKDYPDEDWLHLTGLIHDLGK 144 (304)
Q Consensus 110 l~qi~H~lQTAEai---R~d~p~pdW~qLtGliHDLGK 144 (304)
.+.-+|.+.+-+.+ ...-..|+.+-|++|+||+||
T Consensus 419 ytVd~Htl~~l~~~~~~~~~~~~~~lL~lAaLlHDiGK 456 (774)
T PRK03381 419 WTVDRHLVETAVRAAALTRRVARPDLLLLGALLHDIGK 456 (774)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhhcC
Confidence 35557888875544 333356789999999999999
No 25
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only]
Probab=57.21 E-value=9.7 Score=37.13 Aligned_cols=89 Identities=22% Similarity=0.397 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhCCCC--CchhhhhhhhcccccccccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCC
Q 022006 115 HLLQTAEAIRKDYPDE--DWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFN 192 (304)
Q Consensus 115 H~lQTAEaiR~d~p~p--dW~qLtGliHDLGKvl~l~~~~~~pQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~Yn 192 (304)
=+++.|.++-+-||-- |=++..+++||+||++-+-.. ....|.|-|+-.+
T Consensus 148 ~~~~l~~~~~~~y~~~n~dli~Ag~ilHdigK~~el~~~-~~~~yt~~g~lig--------------------------- 199 (287)
T COG3481 148 TVLELYKRISEIYPTVNRELIYAGAILHDIGKVLELTGP-EATEYTVRGNLIG--------------------------- 199 (287)
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHhcccccccCCCc-ccccceeccceeE---------------------------
Confidence 3566677776656543 678889999999999976333 3457777776543
Q ss_pred CCCCcccCCCCccccccccCchhhHHHHHHhCCCCCChhhHHHhHhcccccccccccc
Q 022006 193 TEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAY 250 (304)
Q Consensus 193 Tk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY 250 (304)
+.|-++|+ .=++.+.. -++.+.+-++| |+-+.=|-...|
T Consensus 200 ---------------Hia~~~d~-i~~~a~El--~~~~~~v~~l~-h~Ilshhg~~e~ 238 (287)
T COG3481 200 ---------------HIALIVDE-ITKAAREL--GIDDEEVLALR-HEILSHHGKLEY 238 (287)
T ss_pred ---------------EEEeehhH-HHHHHHHh--CCCchhhhHhh-HhhhhhccCccc
Confidence 45667777 56666553 44446666665 555555555444
No 26
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=53.47 E-value=9 Score=35.45 Aligned_cols=15 Identities=40% Similarity=0.722 Sum_probs=12.1
Q ss_pred hhhhhhhhccccccc
Q 022006 133 LHLTGLIHDLGKVLN 147 (304)
Q Consensus 133 ~qLtGliHDLGKvl~ 147 (304)
+-..||+||+||++.
T Consensus 108 ~~~aaLlHDlgK~~~ 122 (218)
T TIGR03760 108 VFYAALLHDLGKLAV 122 (218)
T ss_pred HHHHHHHHhhhhhhH
Confidence 445689999999974
No 27
>PRK12704 phosphodiesterase; Provisional
Probab=51.31 E-value=17 Score=37.60 Aligned_cols=87 Identities=21% Similarity=0.216 Sum_probs=56.5
Q ss_pred HHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHH---hhC-CCCCchhhhhhhhcccccccccCCCCCCCceeecCceee
Q 022006 91 WECCELLNDVVDESDPDLDEPQIEHLLQTAEAIR---KDY-PDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPV 166 (304)
Q Consensus 91 ~eA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR---~d~-p~pdW~qLtGliHDLGKvl~l~~~~~~pQW~vvGDTfpV 166 (304)
.+++.+|..| .-.|+.+. ....|.+-+|-..+ +.. .+++-.-+.||+||+||+...
T Consensus 317 ~~i~~ll~~l-~~R~~~~q-n~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIGK~~~~------------------ 376 (520)
T PRK12704 317 PELIKLLGRL-KYRTSYGQ-NVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGKALDH------------------ 376 (520)
T ss_pred HHHHHHHHHh-hccCcCCC-cHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCcCccc------------------
Confidence 3556677666 33444432 24578877665543 222 356777899999999998410
Q ss_pred ecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHHhCCCCCChhhHHHhHhcc
Q 022006 167 GCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHS 240 (304)
Q Consensus 167 GC~f~~~iv~~e~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHS 240 (304)
+ + ...|...=+.+++. ..+|+....+|++|.
T Consensus 377 -----------e-----------------------~-------~~~H~~iGa~il~~--~~~~~~v~~aI~~HH 407 (520)
T PRK12704 377 -----------E-----------------------V-------EGSHVEIGAELAKK--YKESPVVINAIAAHH 407 (520)
T ss_pred -----------c-----------------------c-------cCCHHHHHHHHHHH--cCCCHHHHHHHHHcC
Confidence 0 0 01477777778875 468999999999997
No 28
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=49.10 E-value=9.8 Score=37.06 Aligned_cols=33 Identities=42% Similarity=0.640 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhCCCC--Cchhhhhhhhcccccccc
Q 022006 116 LLQTAEAIRKDYPDE--DWLHLTGLIHDLGKVLNL 148 (304)
Q Consensus 116 ~lQTAEaiR~d~p~p--dW~qLtGliHDLGKvl~l 148 (304)
++++|.++-..||.- |=+-..+|+||+||+.-+
T Consensus 167 v~~~~~~l~~~y~~~n~dll~agalLHDiGKi~E~ 201 (314)
T PRK13480 167 MLRLAKSICDLYPSLNKDLLYAGIILHDLGKVIEL 201 (314)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhhhHHHh
Confidence 344455554557643 445455599999999966
No 29
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=46.64 E-value=17 Score=30.66 Aligned_cols=48 Identities=21% Similarity=0.246 Sum_probs=28.2
Q ss_pred HHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCCchhhhhhhhcc
Q 022006 94 CELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDL 142 (304)
Q Consensus 94 ~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDL 142 (304)
+++.-+.....-.++..|-|.|++++|+.+..- +-..=...+||+||.
T Consensus 2 ~~~A~~~h~~~~~~~g~py~~H~~~va~~l~~~-~~d~~~i~aalLHD~ 49 (153)
T PF13328_consen 2 LAFAAEAHAGQRRKSGEPYISHPLEVAEILAEL-GLDEETIAAALLHDV 49 (153)
T ss_dssp HHHHHHHTTT-B-ST--BTTHHHHHHHHHHHTS----HHHHHHHHHTTH
T ss_pred HHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHc-CCCHHHHhhheeecH
Confidence 333334433344456688999999999999544 433336788899984
No 30
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=45.80 E-value=43 Score=28.16 Aligned_cols=55 Identities=31% Similarity=0.476 Sum_probs=43.8
Q ss_pred hhhcchHHHHHHHHHHhcC--CCCccccHHHHHHHHhh------hhcCCCCCCCchHHHHHHHHHHH
Q 022006 64 NHINQTYDFVKKMREEYGK--LNRVEMSIWECCELLND------VVDESDPDLDEPQIEHLLQTAEA 122 (304)
Q Consensus 64 ~H~~QTvdfv~~~~~~~~~--~~~~~MsI~eA~e~Ln~------lvDeSDPD~dl~qi~H~lQTAEa 122 (304)
..+.|+.++|.+..++|+- .|+-+-+|-||-..|-. ||++. +-|.+.|+++.|+.
T Consensus 16 ~~~~~g~~~v~~i~~~~gI~diN~IKPGIgEaTRvLLRRvP~~vLVr~~----~~pd~~Hl~~LA~e 78 (100)
T PF15608_consen 16 APTWQGWAEVERIAERYGISDINLIKPGIGEATRVLLRRVPWKVLVRDP----DDPDLAHLLLLAEE 78 (100)
T ss_pred chhHHHHHHHHHHHHHhCCCCcccccCChhHHHHHHHhcCCCEEEECCC----CCccHHHHHHHHHH
Confidence 3466789999999999974 66899999999999853 56542 23778999999985
No 31
>PRK05092 PII uridylyl-transferase; Provisional
Probab=45.10 E-value=12 Score=41.07 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhh------------------CCCCCchhhhhhhhcccc
Q 022006 113 IEHLLQTAEAIRKD------------------YPDEDWLHLTGLIHDLGK 144 (304)
Q Consensus 113 i~H~lQTAEaiR~d------------------~p~pdW~qLtGliHDLGK 144 (304)
-+|.++|-+.+++- -++|+.+-|++|+||+||
T Consensus 495 d~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDIGK 544 (931)
T PRK05092 495 DEHTIRAIGVLAEIERGELADEHPLASELMPKIESRRALYVAVLLHDIAK 544 (931)
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 36888887766531 155788999999999999
No 32
>KOG4481 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.35 E-value=21 Score=33.07 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=27.6
Q ss_pred CCCccccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhhC
Q 022006 83 LNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDY 127 (304)
Q Consensus 83 ~~~~~MsI~eA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~ 127 (304)
..+++.||-||+++||. -.-+|.+ ||||-|-..|
T Consensus 112 Ipkgkit~~eAL~~ln~--hkL~pet---------w~AekIA~ey 145 (194)
T KOG4481|consen 112 IPKGKITIVEALTFLNN--HKLLPET---------WTAEKIAQEY 145 (194)
T ss_pred CCCCceeHHHHHHHHhh--hhcChhh---------hHHHHHHHHH
Confidence 44688999999999998 5555766 7899998874
No 33
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=42.24 E-value=12 Score=35.84 Aligned_cols=79 Identities=18% Similarity=0.301 Sum_probs=58.0
Q ss_pred HHHHHHHHhhC--CCCCchhhhhhhhccccccc--ccCCCCCCCceeecCceeeecccCCC-cccccccccCCCC-CCCC
Q 022006 117 LQTAEAIRKDY--PDEDWLHLTGLIHDLGKVLN--LPSFGGLPQWAVVGDTFPVGCAFDES-IVHHKYFKENPDY-SNPA 190 (304)
Q Consensus 117 lQTAEaiR~d~--p~pdW~qLtGliHDLGKvl~--l~~~~~~pQW~vvGDTfpVGC~f~~~-iv~~e~F~~NPD~-~~p~ 190 (304)
|.+||.+++++ +.+-|-+..-..--+-.|.. +...+..+-|-|.|. |.++-. -+|-+.|+.|--- ++|.
T Consensus 187 ~EeAE~~Kr~~k~~~Eif~~v~PV~eKMAeIv~~hie~~~i~dl~lvGGa-----c~~~g~e~~Fe~~l~l~v~~P~~p~ 261 (277)
T COG4820 187 LEEAEQYKRGHKKGEEIFPVVKPVYEKMAEIVARHIEGQGITDLWLVGGA-----CMQPGVEELFEKQLALQVHLPQHPL 261 (277)
T ss_pred HhHHHHhhhccccchhcccchhHHHHHHHHHHHHHhccCCCcceEEeccc-----ccCccHHHHHHHHhccccccCCCcc
Confidence 78999999998 77789888877766666653 444566667777663 666643 4577777777654 7899
Q ss_pred CCCCCCcccC
Q 022006 191 FNTEYGVYSE 200 (304)
Q Consensus 191 YnTk~GiY~p 200 (304)
|-|+.||-..
T Consensus 262 y~TPLgIA~s 271 (277)
T COG4820 262 YMTPLGIASS 271 (277)
T ss_pred eechhhhhhc
Confidence 9999999654
No 34
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=41.33 E-value=15 Score=40.30 Aligned_cols=35 Identities=34% Similarity=0.525 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHHHHhh------------------CCCCCchhhhhhhhcccc
Q 022006 110 EPQIEHLLQTAEAIRKD------------------YPDEDWLHLTGLIHDLGK 144 (304)
Q Consensus 110 l~qi~H~lQTAEaiR~d------------------~p~pdW~qLtGliHDLGK 144 (304)
.+.-+|.+.|-+.+++- -.+++.+-|++|+||+||
T Consensus 459 ytVdeHtl~~v~~l~~l~~~~~~~~~p~~~~l~~~l~~~~lL~lAaLlHDIGK 511 (895)
T PRK00275 459 YTVDAHTLNLIKNLRKLRYPEVSEKFPLASKLMGRLPKPELLYIAGLYHDIGK 511 (895)
T ss_pred CcHHHHHHHHHHHHHHhhcccccccCchHHHHHHhcCCHHHHHHHHHHHhhhc
Confidence 45557999887777541 125678999999999999
No 35
>PRK05007 PII uridylyl-transferase; Provisional
Probab=40.57 E-value=48 Score=36.42 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=26.9
Q ss_pred chHHHHHHHHHHHHHh------------------hCCCCCchhhhhhhhcccc
Q 022006 110 EPQIEHLLQTAEAIRK------------------DYPDEDWLHLTGLIHDLGK 144 (304)
Q Consensus 110 l~qi~H~lQTAEaiR~------------------d~p~pdW~qLtGliHDLGK 144 (304)
.+.-+|.+.+-+.+++ +-++++.+.|++|+||+||
T Consensus 460 ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~lAaLlHDIGK 512 (884)
T PRK05007 460 YTVDEHTIRVLLKLESFADEETRQRHPLCVELYPRLPKKELLLLAALFHDIAK 512 (884)
T ss_pred CcHhHHHHHHHHHHHHHhcccccccchHHHHHHHhcCChhHHHHHHHHHhhcC
Confidence 4555888888776652 1247789999999999999
No 36
>PRK04374 PII uridylyl-transferase; Provisional
Probab=38.74 E-value=23 Score=38.84 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHHHHh------------------hCCCCCchhhhhhhhcccc
Q 022006 110 EPQIEHLLQTAEAIRK------------------DYPDEDWLHLTGLIHDLGK 144 (304)
Q Consensus 110 l~qi~H~lQTAEaiR~------------------d~p~pdW~qLtGliHDLGK 144 (304)
.+.-+|.+.+-+.+++ ....|+.+-|++|+||+||
T Consensus 448 ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~lL~lAaLlHDIGK 500 (869)
T PRK04374 448 YTVDQHTLMVLRNIALFAAGRADERFSIAHEVWPRLRKPELLLLAGLFHDIAK 500 (869)
T ss_pred CcHHHHHHHHHHHHHHHhccccccccccHHHHHhccCCccHHHHHHHHHhccC
Confidence 4556788887666542 1145789999999999999
No 37
>PF06784 UPF0240: Uncharacterised protein family (UPF0240); InterPro: IPR009622 This is a group of proteins of unknown function.
Probab=37.86 E-value=28 Score=31.46 Aligned_cols=35 Identities=31% Similarity=0.511 Sum_probs=28.2
Q ss_pred CCCccccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhhCC
Q 022006 83 LNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYP 128 (304)
Q Consensus 83 ~~~~~MsI~eA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p 128 (304)
..++++||.||+++|+..- .||.+ .|||+|-++|.
T Consensus 113 vPkGkltl~qal~lL~~Hq--~~P~~---------WtaekIA~eY~ 147 (179)
T PF06784_consen 113 VPKGKLTLRQALELLNNHQ--LDPET---------WTAEKIAQEYK 147 (179)
T ss_pred CCCCceeHHHHHHHHHHhc--cCccc---------cCHHHHHHHhC
Confidence 4579999999999999754 55665 46999999974
No 38
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=37.28 E-value=53 Score=35.49 Aligned_cols=37 Identities=32% Similarity=0.356 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHHHHhh---CCCCCchhhhhhhhcccccc
Q 022006 110 EPQIEHLLQTAEAIRKD---YPDEDWLHLTGLIHDLGKVL 146 (304)
Q Consensus 110 l~qi~H~lQTAEaiR~d---~p~pdW~qLtGliHDLGKvl 146 (304)
.+.-+|.++|.+.+.+. ...|+=+-|++|+||+||-.
T Consensus 379 ytVDeHTL~~l~~~~~~~~~~~~~~lL~LAALlHDIGKg~ 418 (693)
T PRK00227 379 HTIDEHSLNTVANCALETVTVARPDLLLLGALYHDIGKGY 418 (693)
T ss_pred CcHHHHHHHHHHHHHHhhhccCccHHHHHHHHHHhhcCCC
Confidence 35567999998866432 25677788999999999944
No 39
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=37.20 E-value=20 Score=39.15 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHHHHh------------------hCCCCCchhhhhhhhcccc
Q 022006 110 EPQIEHLLQTAEAIRK------------------DYPDEDWLHLTGLIHDLGK 144 (304)
Q Consensus 110 l~qi~H~lQTAEaiR~------------------d~p~pdW~qLtGliHDLGK 144 (304)
.+.-+|.+.|-+.+++ .-+.+..+-|++|+||+||
T Consensus 435 ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDIGK 487 (854)
T PRK01759 435 YTVDEHTLRVMLKLESFLDEESAEQHPICHQIFSQLSDRTLLYIAALFHDIAK 487 (854)
T ss_pred CcHHHHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHHHHHHHHHHHhhcC
Confidence 4566798888776532 1256788899999999999
No 40
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=36.17 E-value=1.1e+02 Score=26.32 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcC--CC--CccccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCC
Q 022006 71 DFVKKMREEYGK--LN--RVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDE 130 (304)
Q Consensus 71 dfv~~~~~~~~~--~~--~~~MsI~eA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~p 130 (304)
.|+..+++-|.+ ++ ...||..||++.|.- +|+.+..+|.-++. +.+++-|||.
T Consensus 41 ~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv-----~~~As~~eIkkaYR--rLa~~~HPDk 97 (116)
T PTZ00100 41 GFNPSLGSLFLKNDLKGFENPMSKSEAYKILNI-----SPTASKERIREAHK--QLMLRNHPDN 97 (116)
T ss_pred hhhHHHHHHHhccccccccCCCCHHHHHHHcCC-----CCCCCHHHHHHHHH--HHHHHhCCCC
Confidence 467777777744 33 468999999999983 34555666655544 3445556763
No 41
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=35.49 E-value=41 Score=31.06 Aligned_cols=38 Identities=32% Similarity=0.461 Sum_probs=26.4
Q ss_pred hHHHHHHHHH---HHHHhhC-CCCCchhhhhhhhcccccccc
Q 022006 111 PQIEHLLQTA---EAIRKDY-PDEDWLHLTGLIHDLGKVLNL 148 (304)
Q Consensus 111 ~qi~H~lQTA---EaiR~d~-p~pdW~qLtGliHDLGKvl~l 148 (304)
..+.|.+.+| ..|-+.. .|++=....||+||+||..-.
T Consensus 36 ~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~~~ 77 (222)
T COG1418 36 HVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAIDH 77 (222)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcccccc
Confidence 3456666654 4455443 467778889999999999843
No 42
>PRK08071 L-aspartate oxidase; Provisional
Probab=34.55 E-value=45 Score=33.76 Aligned_cols=72 Identities=26% Similarity=0.435 Sum_probs=47.4
Q ss_pred HHHHHHHhcCCCCccccHHHHHHHHhhhh-cCC--CCC---CCchHHHHHHHHHHHH---------------HhhCCCCC
Q 022006 73 VKKMREEYGKLNRVEMSIWECCELLNDVV-DES--DPD---LDEPQIEHLLQTAEAI---------------RKDYPDED 131 (304)
Q Consensus 73 v~~~~~~~~~~~~~~MsI~eA~e~Ln~lv-DeS--DPD---~dl~qi~H~lQTAEai---------------R~d~p~pd 131 (304)
.++...+|....|.+-.+.+|+..|+.|- .+. +.+ .+...+..++.+|++| |.|||...
T Consensus 415 l~~~m~~~~gi~R~~~~L~~a~~~l~~l~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~ 494 (510)
T PRK08071 415 IQEKMMKYVGIVRTEQSLSEAKRWLEKYGVRNMILDHDALTNEEIELSHMLTVAKLIVVSALQRTESRGGHYRSDYPHRN 494 (510)
T ss_pred HHHHHHhhccEEEcHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHhHHHHHHHHHHHHHhCCCCccceecCCCCccc
Confidence 45566777778888899999999999984 211 111 1223457888999886 44578778
Q ss_pred chhhhhhhhccccc
Q 022006 132 WLHLTGLIHDLGKV 145 (304)
Q Consensus 132 W~qLtGliHDLGKv 145 (304)
|...+ ++-.-||+
T Consensus 495 ~~~~~-~~~~~~~~ 507 (510)
T PRK08071 495 WRGKE-IVRTKRKL 507 (510)
T ss_pred cCceE-EEecCCce
Confidence 86544 44445554
No 43
>PRK03059 PII uridylyl-transferase; Provisional
Probab=34.50 E-value=27 Score=38.15 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHh------------------hCCCCCchhhhhhhhcccc
Q 022006 111 PQIEHLLQTAEAIRK------------------DYPDEDWLHLTGLIHDLGK 144 (304)
Q Consensus 111 ~qi~H~lQTAEaiR~------------------d~p~pdW~qLtGliHDLGK 144 (304)
+.-+|.+.|-+.+++ +..+++.+.|++|+||+||
T Consensus 440 tVd~Htl~~v~~l~~~~~~~~~~~~p~~~~~~~~~~~~~lL~LAaLlHDIGK 491 (856)
T PRK03059 440 TVDQHILMVLRNLRRFAMAEHAHEYPFCSQLIANFDRPWLLYVAALFHDIAK 491 (856)
T ss_pred cHhHHHHHHHHHHHHhhccccccccchHHHHHHhcCChhHHHHHHHHHhhcc
Confidence 455798888777653 1124688999999999999
No 44
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=34.31 E-value=68 Score=24.45 Aligned_cols=43 Identities=26% Similarity=0.458 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCccceecCCCCCCh-hhhh--hhhHHHHHHHcCCCCC
Q 022006 259 VENLKWLETFSKYDLYSKSKVRIDV-EKVK--PYYLSLIEKYFPAKLK 303 (304)
Q Consensus 259 ~~~l~wv~~Fn~yDLYSKs~~~pdv-e~lk--PYY~~LIdKY~P~~l~ 303 (304)
.++++||+...+-. ++.....|+ +.++ =-+-.||+++.|+.+.
T Consensus 2 ~~ll~Win~~l~~~--~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~ 47 (108)
T PF00307_consen 2 KELLKWINSHLEKY--GKGRRVTNFSEDLRDGVVLCKLINKLFPGTID 47 (108)
T ss_dssp HHHHHHHHHHHTTS--TTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSS
T ss_pred HHHHHHHHHHcccc--cCCCCcCcHHHHhcCHHHHHHHHHHHhhccch
Confidence 47899999887522 223344555 5555 4678899999998764
No 45
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=34.16 E-value=33 Score=34.61 Aligned_cols=38 Identities=26% Similarity=0.291 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHHHHhhCC-CCC-chhhhhhhhccccccc
Q 022006 110 EPQIEHLLQTAEAIRKDYP-DED-WLHLTGLIHDLGKVLN 147 (304)
Q Consensus 110 l~qi~H~lQTAEaiR~d~p-~pd-W~qLtGliHDLGKvl~ 147 (304)
.+...|.+++-+.+.+-.. .++ .+.|++|+||+||-..
T Consensus 257 ~~v~~Htl~vl~~~~~l~~~~~~~~l~lAaLLHDiGK~~t 296 (466)
T TIGR02692 257 KDVYEHSLTVLRQAIDLEDDGPDLVLRWAALLHDIGKPAT 296 (466)
T ss_pred CcHHHHHHHHHHHHHhccccccCHHHHHHHHHhhccCCCC
Confidence 4667899988777654211 234 6899999999999653
No 46
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=33.33 E-value=32 Score=31.97 Aligned_cols=38 Identities=24% Similarity=0.247 Sum_probs=24.5
Q ss_pred CCchHHHHHHHHHHHHHhh-----CCCCCchhhhhhhhccccc
Q 022006 108 LDEPQIEHLLQTAEAIRKD-----YPDEDWLHLTGLIHDLGKV 145 (304)
Q Consensus 108 ~dl~qi~H~lQTAEaiR~d-----~p~pdW~qLtGliHDLGKv 145 (304)
-++.-+...+.+|.+|-+. -.+++=+-+++|+||+|+.
T Consensus 55 ~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG~~ 97 (228)
T TIGR03401 55 ETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIGTT 97 (228)
T ss_pred hhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhccc
Confidence 4444455556666666432 1355567889999999975
No 47
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=32.19 E-value=18 Score=35.27 Aligned_cols=36 Identities=39% Similarity=0.732 Sum_probs=24.1
Q ss_pred HHHHHHHHHH-HHHhhC----C-----------CCCch---hhhhhhhccccccc
Q 022006 112 QIEHLLQTAE-AIRKDY----P-----------DEDWL---HLTGLIHDLGKVLN 147 (304)
Q Consensus 112 qi~H~lQTAE-aiR~d~----p-----------~pdW~---qLtGliHDLGKvl~ 147 (304)
-+.|.|++|. |+|-.. | .+.|- -++||.|||||++.
T Consensus 67 ll~h~LEva~~Alrl~~~~~lp~~a~pEe~~~q~~~W~~avf~AALlhdlgk~l~ 121 (327)
T PF07514_consen 67 LLDHTLEVAAYALRLRQGYMLPPGATPEEQAAQEPAWRYAVFYAALLHDLGKPLT 121 (327)
T ss_pred HHHHHHHHHHHHHHHhcCeecCCCCChhhHHHHHhhhHHHHHHHHHHhccCccee
Confidence 3688888774 444321 1 45674 46789999999775
No 48
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.87 E-value=26 Score=36.94 Aligned_cols=18 Identities=39% Similarity=0.577 Sum_probs=16.4
Q ss_pred HHHHHhhCCCCCchhhhh
Q 022006 120 AEAIRKDYPDEDWLHLTG 137 (304)
Q Consensus 120 AEaiR~d~p~pdW~qLtG 137 (304)
|+-+|+++|.++|+|+|=
T Consensus 373 A~~a~r~~g~~~Wlq~Ty 390 (631)
T KOG2155|consen 373 AACAMRDPGKNDWLQLTY 390 (631)
T ss_pred HHHHhhcCCCCccccccc
Confidence 888999999999999984
No 49
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=31.18 E-value=72 Score=32.31 Aligned_cols=111 Identities=23% Similarity=0.176 Sum_probs=65.4
Q ss_pred HHHHHHHHhhhhcCCCCCCCchHHHHHHHH---HHHHHhhCCC----CCchhhhhhhhcccccccccCCCCCCCceeecC
Q 022006 90 IWECCELLNDVVDESDPDLDEPQIEHLLQT---AEAIRKDYPD----EDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGD 162 (304)
Q Consensus 90 I~eA~e~Ln~lvDeSDPD~dl~qi~H~lQT---AEaiR~d~p~----pdW~qLtGliHDLGKvl~l~~~~~~pQW~vvGD 162 (304)
..+.++-|..++..-|+.| -.|+..+ ++++-+.+|- -|=+++.|.+||+|||--
T Consensus 168 ~~~t~~~L~~~~E~R~~et----g~H~~Rv~~~~~~lAe~lgLse~~v~~i~~AapLHDIGKvai--------------- 228 (360)
T COG3437 168 LDETLEELAALLEVRDYET----GDHLERVAQYSELLAELLGLSEEEVDLIKKAAPLHDIGKVAI--------------- 228 (360)
T ss_pred HHHHHHHHHHHHHhcccch----hhHHHHHHHHHHHHHHHhCCCHHHHHHHHhccchhhcccccC---------------
Confidence 3378888888887777776 3455443 3444333331 266788999999999972
Q ss_pred ceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHHhCCCCCChhhHHHhHhc---
Q 022006 163 TFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYH--- 239 (304)
Q Consensus 163 TfpVGC~f~~~iv~~e~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyH--- 239 (304)
+++|...-- +.||+. --+-=+|.++=|.+|+.-+- +=+-|-.++|+|
T Consensus 229 --------PD~ILlKpg-~Lt~ee--------------------~~imk~H~~~G~~il~~s~~-~mq~a~eIa~~HHEr 278 (360)
T COG3437 229 --------PDSILLKPG-KLTSEE--------------------FEIMKGHPILGAEILKSSER-LMQVAAEIARHHHER 278 (360)
T ss_pred --------ChHHhcCCC-CCCHHH--------------------HHHHhcchHHHHHHHHHHHH-HHHHHHHHHHHhhhc
Confidence 233333111 222221 11122677777777765332 556677788888
Q ss_pred ---cccccccccc
Q 022006 240 ---SFYALHKSEA 249 (304)
Q Consensus 240 ---SFYpwH~~ga 249 (304)
|=||-|-.|.
T Consensus 279 wDGsGYPdgLkGd 291 (360)
T COG3437 279 WDGSGYPDGLKGD 291 (360)
T ss_pred cCCCCCCCCCCcc
Confidence 5666666554
No 50
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=30.46 E-value=43 Score=34.12 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHhhCCCCCchhhhhhhhcccccc
Q 022006 111 PQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVL 146 (304)
Q Consensus 111 ~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDLGKvl 146 (304)
....|.+.+-..+.+. +..-.+-+++|+||+||-.
T Consensus 228 d~~~htl~~l~~~~~~-~~~l~lR~AaLlHDiGK~~ 262 (417)
T PRK13298 228 NLGNYILMGLSKISKL-TKDIDIRFSYLCQFLGSMI 262 (417)
T ss_pred hHHHHHHHHHHHHHhc-CCCHHHHHHHHHhhhcCCC
Confidence 4457777666666544 3445688899999999975
No 51
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=30.46 E-value=67 Score=31.66 Aligned_cols=62 Identities=29% Similarity=0.420 Sum_probs=46.8
Q ss_pred ccccHHHHHHHHhhhhcCCCCCCCchHHHH------------HHHHHHHHHhhCCCCCchhhhhhhhcccccccccCCCC
Q 022006 86 VEMSIWECCELLNDVVDESDPDLDEPQIEH------------LLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGG 153 (304)
Q Consensus 86 ~~MsI~eA~e~Ln~lvDeSDPD~dl~qi~H------------~lQTAEaiR~d~p~pdW~qLtGliHDLGKvl~l~~~~~ 153 (304)
-+-.+|+|+-.=-+|+.+|.=|.|++++-- |=-||||.|++ | |-=|+.|-+||- +
T Consensus 178 IEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d-~--~L~q~~g~v~dS----------G 244 (300)
T COG1023 178 IEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKD-P--DLDQISGRVSDS----------G 244 (300)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhC-C--CHHHhcCeeccC----------C
Confidence 456788887766777888999999998743 23589999999 7 566888877773 6
Q ss_pred CCCceee
Q 022006 154 LPQWAVV 160 (304)
Q Consensus 154 ~pQW~vv 160 (304)
|+.|+|.
T Consensus 245 EGrWTv~ 251 (300)
T COG1023 245 EGRWTVE 251 (300)
T ss_pred CceeehH
Confidence 7788774
No 52
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=28.44 E-value=20 Score=38.67 Aligned_cols=16 Identities=50% Similarity=0.899 Sum_probs=14.3
Q ss_pred CCCchhhhhhhhcccc
Q 022006 129 DEDWLHLTGLIHDLGK 144 (304)
Q Consensus 129 ~pdW~qLtGliHDLGK 144 (304)
+++-+-|++|+||+||
T Consensus 464 ~~~~L~lAaLlHDiGK 479 (850)
T TIGR01693 464 DPELLYLAALLHDIGK 479 (850)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 4678899999999999
No 53
>PF12477 TraW_N: Sex factor F TraW protein N terminal
Probab=28.41 E-value=20 Score=24.23 Aligned_cols=12 Identities=42% Similarity=0.938 Sum_probs=9.0
Q ss_pred CceeecCceeee
Q 022006 156 QWAVVGDTFPVG 167 (304)
Q Consensus 156 QW~vvGDTfpVG 167 (304)
.=-|+|+|||+|
T Consensus 20 dLG~~G~~fpIa 31 (31)
T PF12477_consen 20 DLGVIGPTFPIA 31 (31)
T ss_pred hccccccccccC
Confidence 345679999986
No 54
>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=27.91 E-value=33 Score=33.87 Aligned_cols=118 Identities=19% Similarity=0.345 Sum_probs=74.3
Q ss_pred CCceeecCceeeecccCCCccc-cc-ccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHHhCCCCCChhh
Q 022006 155 PQWAVVGDTFPVGCAFDESIVH-HK-YFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAA 232 (304)
Q Consensus 155 pQW~vvGDTfpVGC~f~~~iv~-~e-~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~ea 232 (304)
++.+-.=|.|++||-+.. +|| .+ ||.. -|..+. =.-+.+| -|-|| ||.-+...+..||++-
T Consensus 208 ~~YDYSLD~WS~GcmlA~-miFrkepFFhG-~dN~DQ-----------LVkIakV---LGt~e-l~~Yl~KY~i~Ldp~~ 270 (338)
T KOG0668|consen 208 QMYDYSLDMWSLGCMLAS-MIFRKEPFFHG-HDNYDQ-----------LVKIAKV---LGTDE-LYAYLNKYQIDLDPQF 270 (338)
T ss_pred hhccccHHHHHHHHHHHH-HHhccCcccCC-CCCHHH-----------HHHHHHH---hChHH-HHHHHHHHccCCChhH
Confidence 355556688888888865 444 33 4431 121111 0111223 36666 4555555688999999
Q ss_pred HHHhHhcccccccc--cccccccCChhhHHHHHHHHHcCCccceecCCCCCChhhhh-hhhHHHHH
Q 022006 233 LFIIRYHSFYALHK--SEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVK-PYYLSLIE 295 (304)
Q Consensus 233 L~mIRyHSFYpwH~--~gaY~hL~n~~D~~~l~wv~~Fn~yDLYSKs~~~pdve~lk-PYY~~LId 295 (304)
=.+++-||=.||++ +..=+||.+++-.+.|.=+..+. -.+.+.--|++. |||....+
T Consensus 271 ~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYD------HqeRlTakEam~HpyF~~~~~ 330 (338)
T KOG0668|consen 271 EDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYD------HQERLTAKEAMAHPYFAPVRE 330 (338)
T ss_pred hhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhc------cccccchHHHhcCchHHHHHH
Confidence 99999999999998 56679999998888887766543 222233334444 88876654
No 55
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=27.86 E-value=22 Score=37.91 Aligned_cols=14 Identities=43% Similarity=0.921 Sum_probs=12.2
Q ss_pred hhhhhhhccccccc
Q 022006 134 HLTGLIHDLGKVLN 147 (304)
Q Consensus 134 qLtGliHDLGKvl~ 147 (304)
.+.||+||+||+.-
T Consensus 2 ~~~aLLHDIGK~~~ 15 (648)
T TIGR02578 2 AVAALLHDIGKVIR 15 (648)
T ss_pred chhhhhhccchhhh
Confidence 47789999999994
No 56
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=26.38 E-value=1.8e+02 Score=28.01 Aligned_cols=97 Identities=26% Similarity=0.330 Sum_probs=59.0
Q ss_pred CCccccHHHHHHHHhhh-hcCCCCCCCchHHHHHHHHHHHHHhhCCCCCchhhhhhhhcccccccccCCC--------CC
Q 022006 84 NRVEMSIWECCELLNDV-VDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFG--------GL 154 (304)
Q Consensus 84 ~~~~MsI~eA~e~Ln~l-vDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDLGKvl~l~~~~--------~~ 154 (304)
|....|-.+..+.|..+ .-+..||. -+.=..-||+.|++.+|- +|++.+ | ..
T Consensus 48 Nn~~~s~~~~~~~L~~~~~~~~~~~~---i~TS~~at~~~l~~~~~~-------------~kv~vi---G~~~l~~~l~~ 108 (269)
T COG0647 48 NNSTRSREVVAARLSSLGGVDVTPDD---IVTSGDATADYLAKQKPG-------------KKVYVI---GEEGLKEELEG 108 (269)
T ss_pred CCCCCCHHHHHHHHHhhcCCCCCHHH---eecHHHHHHHHHHhhCCC-------------CEEEEE---CCcchHHHHHh
Confidence 45666666677777773 22223321 134556678888887542 555543 2 12
Q ss_pred CCceeecCcee-----eecccCCCccccc-------------ccccCCCCCCCCCCCCCCcccCCCC
Q 022006 155 PQWAVVGDTFP-----VGCAFDESIVHHK-------------YFKENPDYSNPAFNTEYGVYSEGCG 203 (304)
Q Consensus 155 pQW~vvGDTfp-----VGC~f~~~iv~~e-------------~F~~NPD~~~p~YnTk~GiY~p~CG 203 (304)
-.|.++++.=+ |++..++.+.|.. |+..|||.. ..|+.| +.|+||
T Consensus 109 ~G~~~~~~~~~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~g~~fI~tNpD~~---~p~~~g-~~pgaG 171 (269)
T COG0647 109 AGFELVDEEEPARVDAVVVGLDRTLTYEKLAEALLAIAAGAPFIATNPDLT---VPTERG-LRPGAG 171 (269)
T ss_pred CCcEEeccCCCCcccEEEEecCCCCCHHHHHHHHHHHHcCCcEEEeCCCcc---ccCCCC-CccCcH
Confidence 24666654444 6777777777654 677899984 456777 888887
No 57
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=25.14 E-value=57 Score=34.53 Aligned_cols=40 Identities=25% Similarity=0.636 Sum_probs=32.7
Q ss_pred CCCchHHHHHHHHHHHHHhhCCCC----------Cc------hhhhhhhhcccccc
Q 022006 107 DLDEPQIEHLLQTAEAIRKDYPDE----------DW------LHLTGLIHDLGKVL 146 (304)
Q Consensus 107 D~dl~qi~H~lQTAEaiR~d~p~p----------dW------~qLtGliHDLGKvl 146 (304)
.|+.|.+..+-+.||+||+.||+. .| =++-.|+-||||+=
T Consensus 386 ET~~Pdl~~A~~Fa~~v~~~~P~k~LaYN~SPSFNW~~~~~d~~~~~F~~~L~~lG 441 (527)
T TIGR01346 386 ETSTPDLELAKKFAEGVKSKFPDQLLAYNLSPSFNWSAHMEDDEIAKFIQELGDLG 441 (527)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCCeEEecCCCCccccccCCHHHHHHHHHHHHhcC
Confidence 466788999999999999999865 34 36778999999954
No 58
>PF05964 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The "FY-rich" domain N-terminal region is sometimes closely juxtaposed with the C-terminal region (IPR003889 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=24.47 E-value=29 Score=25.41 Aligned_cols=26 Identities=31% Similarity=0.577 Sum_probs=14.0
Q ss_pred hhhcccccccccCCCCCCCceeecCceeeec
Q 022006 138 LIHDLGKVLNLPSFGGLPQWAVVGDTFPVGC 168 (304)
Q Consensus 138 liHDLGKvl~l~~~~~~pQW~vvGDTfpVGC 168 (304)
.||.||+|... .|-|...-=.||+|=
T Consensus 5 ~v~sLG~i~~~-----~~~fh~~~~IyP~Gy 30 (54)
T PF05964_consen 5 TVHSLGKIVPD-----RPAFHSERYIYPVGY 30 (54)
T ss_dssp EEEEEEE---S-----SGGGB-SS-B--EEE
T ss_pred EEEECeEEeCC-----CCCccCCCEEeeCCE
Confidence 58999999943 256777777899983
No 59
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=24.28 E-value=60 Score=30.03 Aligned_cols=37 Identities=38% Similarity=0.530 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHHHHhh---C-CCCCchhhhhhhhcccccc
Q 022006 110 EPQIEHLLQTAEAIRKD---Y-PDEDWLHLTGLIHDLGKVL 146 (304)
Q Consensus 110 l~qi~H~lQTAEaiR~d---~-p~pdW~qLtGliHDLGKvl 146 (304)
.+-++|.+..||+.++- | -++.=--++|+.||++|-+
T Consensus 16 ~kR~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~aK~~ 56 (187)
T COG1713 16 EKRFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIAKEL 56 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Confidence 45789998777776642 2 2334478999999999987
No 60
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.62 E-value=1.4e+02 Score=23.54 Aligned_cols=42 Identities=12% Similarity=0.060 Sum_probs=33.9
Q ss_pred CccccHHHHHHHHhhhhcCC-CCCCCchHHHHHHHHHHHHHhh
Q 022006 85 RVEMSIWECCELLNDVVDES-DPDLDEPQIEHLLQTAEAIRKD 126 (304)
Q Consensus 85 ~~~MsI~eA~e~Ln~lvDeS-DPD~dl~qi~H~lQTAEaiR~d 126 (304)
+.++|.-+|+..|.++|..- ++++.|.+..-+++.+-++-+.
T Consensus 3 ~k~~sfEe~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~L~k~ 45 (75)
T PRK14064 3 TKKKTFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKL 45 (75)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 35689999999999998775 6689999998888877665544
No 61
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=23.03 E-value=75 Score=34.09 Aligned_cols=34 Identities=32% Similarity=0.342 Sum_probs=25.4
Q ss_pred CCchHHHHHHHHHHHHHhhCCCCCchhhhhhhhcc
Q 022006 108 LDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDL 142 (304)
Q Consensus 108 ~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDL 142 (304)
+..|-|.|.+++|+.+..-..+++ ...+||+||.
T Consensus 16 sg~PYi~Hpl~VA~iL~~~~~D~~-~i~AaLLHDv 49 (683)
T TIGR00691 16 SGEPYIIHPLAVALILAELGMDEE-TVCAALLHDV 49 (683)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCHH-HHHHHhccch
Confidence 457889999999999986522222 4668999996
No 62
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=22.72 E-value=30 Score=29.94 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=15.8
Q ss_pred ccccHHHHHHHHhhhhcC-CCCCCCchHHHHHHHH
Q 022006 86 VEMSIWECCELLNDVVDE-SDPDLDEPQIEHLLQT 119 (304)
Q Consensus 86 ~~MsI~eA~e~Ln~lvDe-SDPD~dl~qi~H~lQT 119 (304)
..||+.||+..|| |++ .+++.=.-+.+|||..
T Consensus 53 ~~Mtl~EA~~ILn--v~~~~~~eeI~k~y~~Lf~~ 85 (127)
T PF03656_consen 53 KGMTLDEARQILN--VKEELSREEIQKRYKHLFKA 85 (127)
T ss_dssp ----HHHHHHHHT----G--SHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcC--CCCccCHHHHHHHHHHHHhc
Confidence 4799999999999 444 3333222334666654
No 63
>smart00735 ZM ZASP-like motif. Short motif (26 amino acids) present in an alpha-actinin-binding protein, ZASP, and similar molecules.
Probab=21.13 E-value=52 Score=20.98 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=12.5
Q ss_pred CCCCCCCCcccCCCC
Q 022006 189 PAFNTEYGVYSEGCG 203 (304)
Q Consensus 189 p~YnTk~GiY~p~CG 203 (304)
.-||++-|+|+++=+
T Consensus 5 ~qyn~P~glys~~n~ 19 (26)
T smart00735 5 KQYNSPIGLYSSENI 19 (26)
T ss_pred cccCCCCCCCCcccH
Confidence 569999999988754
No 64
>PRK10119 putative hydrolase; Provisional
Probab=20.58 E-value=1.5e+02 Score=27.88 Aligned_cols=47 Identities=19% Similarity=0.164 Sum_probs=35.6
Q ss_pred HhhhhcCCCCCCCchHHHHHHHHHHHHHhhC-CCCCchhhhhhhhccc
Q 022006 97 LNDVVDESDPDLDEPQIEHLLQTAEAIRKDY-PDEDWLHLTGLIHDLG 143 (304)
Q Consensus 97 Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~-p~pdW~qLtGliHDLG 143 (304)
..+.....||.=|+.-|.-..++|..|-+.. .+..-+.|.+++||+|
T Consensus 14 v~~~l~~~~~~HD~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv~ 61 (231)
T PRK10119 14 LKNHHQHQDAAHDICHFRRVWATAQKLAADDDVDMLVVLTACYFHDIV 61 (231)
T ss_pred HHHHhhcCCCccChHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcc
Confidence 3344445688888888888899999886553 3667888899999996
No 65
>PF04572 Gb3_synth: Alpha 1,4-glycosyltransferase conserved region; InterPro: IPR007652 The glycosphingolipids (GSL) form part of eukaryotic cell membranes. They consist of a hydrophilic carbohydrate moiety linked to a hydrophobic ceramide tail embedded within the lipid bilayer of the membrane. Lactosylceramide, Gal1,4Glc1Cer (LacCer), is the common synthetic precursor to the majority of GSL found in vertebrates. Alpha 1.4-glycosyltransferases utilise UDP donors and transfer the sugar to a beta-linked acceptor []. No function has been yet assigned to this domain ; GO: 0008378 galactosyltransferase activity, 0005795 Golgi stack
Probab=20.25 E-value=94 Score=26.34 Aligned_cols=66 Identities=18% Similarity=0.373 Sum_probs=44.7
Q ss_pred HHHhHhcccccccccccccccCChhhHHHHHHHHHcCCcc--ceecCC-C-CCChhhhhhhhHHHHHHHcCCC
Q 022006 233 LFIIRYHSFYALHKSEAYKHLMNEEDVENLKWLETFSKYD--LYSKSK-V-RIDVEKVKPYYLSLIEKYFPAK 301 (304)
Q Consensus 233 L~mIRyHSFYpwH~~gaY~hL~n~~D~~~l~wv~~Fn~yD--LYSKs~-~-~pdve~lkPYY~~LIdKY~P~~ 301 (304)
+.++..-+|||-|....-+.+-.+.+.+.++|++ |.|- |+.|.. . ++.+ .-..-|..|+.+|||.+
T Consensus 58 ~~vlp~~~FYPI~~~~~~~~F~~~~~~~~~~~~~--~Sy~vHlWN~~s~~~~i~~-~S~~~y~~La~~~CP~~ 127 (135)
T PF04572_consen 58 FSVLPPEAFYPIPYQDWKRFFEPPSTEEVMEWLK--NSYAVHLWNKMSSGLPIEP-GSNTLYAKLARQHCPRT 127 (135)
T ss_pred eEEcCccceeccChhHhHHHhcCCcchHHHHHhh--CceEEEecccccCCccccC-CcHHHHHHHHHHhChHH
Confidence 4455556788888887777777777788888877 6664 344422 2 2222 34558999999999963
No 66
>PF04986 Y2_Tnp: Putative transposase; InterPro: IPR007069 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=20.16 E-value=27 Score=30.97 Aligned_cols=33 Identities=18% Similarity=0.498 Sum_probs=30.1
Q ss_pred cccccCchhhHHHHHHhCCCCCChhhHHHhHhccccc
Q 022006 207 VMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYA 243 (304)
Q Consensus 207 V~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYp 243 (304)
..|...-+|+|-+++.+ +|+.+.-||||+=||.
T Consensus 145 ~~~~l~~~efi~r~l~H----vp~~~f~~iR~yG~~s 177 (183)
T PF04986_consen 145 KTLTLSAEEFIRRLLQH----VPPKGFKRIRYYGFYS 177 (183)
T ss_pred EEEEechHHHHHHHHhh----cCCCCceEEEEEEEEc
Confidence 56777899999999986 9999999999999987
Done!