Query 022006
Match_columns 304
No_of_seqs 142 out of 215
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 12:35:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022006.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022006hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2huo_A Inositol oxygenase; pro 100.0 6E-147 2E-151 1021.7 18.5 274 27-304 10-289 (289)
2 2ibn_A Inositol oxygenase; red 100.0 6E-136 2E-140 934.6 15.4 247 55-304 3-250 (250)
3 3ccg_A HD superfamily hydrolas 93.1 0.051 1.8E-06 46.0 3.0 106 88-241 3-114 (190)
4 2o08_A BH1327 protein; putativ 93.1 0.057 2E-06 45.6 3.3 52 88-146 2-57 (188)
5 2ogi_A Hypothetical protein SA 92.5 0.072 2.4E-06 45.5 3.1 52 88-146 10-65 (196)
6 3hc1_A Uncharacterized HDOD do 91.2 0.21 7.2E-06 45.1 4.8 129 81-247 73-224 (305)
7 3ljx_A MMOQ response regulator 90.3 0.21 7.1E-06 44.9 3.9 125 80-240 61-206 (288)
8 3i7a_A Putative metal-dependen 88.3 0.48 1.6E-05 42.2 4.7 119 80-241 69-215 (281)
9 2qgs_A Protein Se1688; alpha-h 85.5 0.62 2.1E-05 40.6 3.7 52 90-144 7-63 (225)
10 3djb_A Hydrolase, HD family; a 82.6 0.99 3.4E-05 39.9 3.8 56 90-145 7-63 (223)
11 3m1t_A Putative phosphohydrola 82.0 0.85 2.9E-05 40.6 3.2 123 82-240 62-203 (275)
12 3b57_A LIN1889 protein; Q92AN1 80.0 1.3 4.4E-05 38.0 3.5 55 92-146 9-64 (209)
13 2pq7_A Predicted HD superfamil 79.4 1.4 4.7E-05 37.8 3.5 53 90-145 15-71 (220)
14 2pjq_A Uncharacterized protein 79.2 0.92 3.2E-05 39.7 2.4 57 88-144 10-67 (231)
15 3dto_A BH2835 protein; all alp 79.0 1.7 5.7E-05 38.5 4.0 56 90-145 7-63 (223)
16 3sk9_A Putative uncharacterize 77.1 1.3 4.3E-05 40.4 2.8 46 103-151 18-83 (265)
17 3tm8_A BD1817, uncharacterized 73.6 1.6 5.4E-05 40.1 2.5 42 212-256 231-272 (328)
18 1vqr_A Hypothetical protein CJ 72.9 1.7 5.9E-05 38.7 2.5 132 80-245 76-229 (297)
19 3mem_A Putative signal transdu 70.5 1.8 6.1E-05 41.6 2.1 128 80-240 230-382 (457)
20 3kq5_A Hypothetical cytosolic 69.3 1.5 5.2E-05 42.8 1.4 37 111-147 75-120 (393)
21 1ynb_A Hypothetical protein AF 46.4 9.4 0.00032 33.0 2.2 36 110-146 37-80 (173)
22 3gw7_A Uncharacterized protein 44.4 8.5 0.00029 34.4 1.7 41 105-145 22-63 (239)
23 3nr1_A HD domain-containing pr 44.4 28 0.00095 29.8 4.8 53 90-142 7-62 (178)
24 3nqw_A CG11900; stringent resp 43.8 31 0.001 29.4 5.0 53 90-142 9-64 (179)
25 2hek_A Hypothetical protein; p 43.0 12 0.00039 35.6 2.4 38 110-147 49-91 (371)
26 3m5f_A Metal dependent phospho 40.8 12 0.00042 34.3 2.1 17 131-147 57-73 (244)
27 4dmb_A HD domain-containing pr 40.3 8.7 0.0003 34.0 1.1 44 110-166 44-90 (204)
28 2paq_A 5'-deoxynucleotidase YF 39.7 10 0.00035 32.9 1.4 38 110-147 30-77 (201)
29 2l3i_A Aoxki4A, antimicrobial 34.7 33 0.0011 22.1 2.8 25 209-241 6-30 (30)
30 1chu_A Protein (L-aspartate ox 33.8 37 0.0013 32.8 4.4 52 73-124 443-501 (540)
31 3aql_A Poly(A) polymerase; tra 27.9 23 0.00078 34.0 1.8 36 111-146 266-303 (415)
32 2ksn_A Ubiquitin domain-contai 26.0 91 0.0031 26.6 4.9 47 69-126 34-83 (137)
33 2gz4_A Hypothetical protein AT 25.8 41 0.0014 29.8 2.9 61 86-146 27-91 (207)
34 1vj7_A Bifunctional RELA/SPOT; 25.5 49 0.0017 31.9 3.6 52 90-142 28-79 (393)
35 2dqb_A Deoxyguanosinetriphosph 21.1 30 0.001 33.1 1.2 17 130-146 98-114 (376)
36 2q14_A Phosphohydrolase; BT420 20.7 22 0.00075 34.4 0.2 14 133-146 89-102 (410)
37 2e5v_A L-aspartate oxidase; ar 20.7 64 0.0022 30.4 3.4 39 73-123 398-436 (472)
No 1
>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*
Probab=100.00 E-value=5.9e-147 Score=1021.65 Aligned_cols=274 Identities=47% Similarity=0.913 Sum_probs=252.6
Q ss_pred eecCC-CCCCCCc----cccccCCCccccchhhHHHHHHHHHhhhcchHHHHHHHHHHhcCCCCccccHHHHHHHHhhhh
Q 022006 27 SLDGG-FLVPQTN----SFGHTFRDYDAEGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVV 101 (304)
Q Consensus 27 ~~d~~-f~~p~~~----~~~~~fR~Y~~~~~r~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~eA~e~Ln~lv 101 (304)
.+|++ |.+|+.+ +++++||||+. +.+++||++|||+||++|||+||++||++|++++|++|||||||++||+||
T Consensus 10 ~~d~~~~~~p~~~~~~~k~~~~FR~Y~~-~~~~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MtIweA~e~Ln~Lv 88 (289)
T 2huo_A 10 GPDPSLVYRPDVDPEMAKSKDSFRNYTS-GPLLDRVFTTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIMEAVGMLDDLV 88 (289)
T ss_dssp ----------------------CCCSSS-CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCC
T ss_pred cCCccceeccCccccccccHHHhhCccc-chhHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhc
Confidence 37888 6888877 77889999997 557799999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHhhCCCCCchhhhhhhhcccccccccCCCCCCCceeecCceeeecccCCCccccc-cc
Q 022006 102 DESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHK-YF 180 (304)
Q Consensus 102 DeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDLGKvl~l~~~~~~pQW~vvGDTfpVGC~f~~~iv~~e-~F 180 (304)
||||||+|+|||+||||||||||+|||..||||||||||||||||++ +++|||+||||||||||+|+++|||++ +|
T Consensus 89 DeSDPD~dl~qi~H~lQTAEaiR~d~pp~dW~qLtGLiHDLGKvl~~---~~epQW~vvGDTfpVGC~f~~~iv~~e~~F 165 (289)
T 2huo_A 89 DESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKIMAL---WGEPQWAVVGDTFPVGCRPQASVVFCDSTF 165 (289)
T ss_dssp CSSCTTCCSCHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTGGGGGGG---GTCCGGGTSSCCCBSSSCCCTTSTTTTTSC
T ss_pred CCcCCccchhHHHHHHHHHHHHHHhCCCcchheeeeecccchhhhhh---cCCCceeeecCcceeccccccccccchhhc
Confidence 99999999999999999999999997777999999999999999987 499999999999999999999999999 99
Q ss_pred ccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHHhCCCCCChhhHHHhHhcccccccccccccccCChhhHH
Q 022006 181 KENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMNEEDVE 260 (304)
Q Consensus 181 ~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~~D~~ 260 (304)
++|||.+||+||||||||+||||||||+||||||||||+|||+|+||||+|||+|||||||||||++|||+||||++|.+
T Consensus 166 ~~NpD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~~L~ne~D~~ 245 (289)
T 2huo_A 166 QDNPDLQDPRYSTELGMYQPHCGLENVLMSWGHDEYLYQMMKFNKFSLPSEAFYMIRFHSFYPWHTGGDYRQLCSQQDLD 245 (289)
T ss_dssp TTCGGGGSTTTSSSSTTCCTTCCGGGSCBCSSHHHHHHHHHHHTTCCCCHHHHHHHHHTTCHHHHTSSCCTTTCCHHHHH
T ss_pred cCCCCCCCccccccCCcccCCCCccceeecccchHHHHHHHHcCCCCCCHHHHHHHHHhccCcccccccHhhhcChhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCccceecCCCCCChhhhhhhhHHHHHHHcCCCCCC
Q 022006 261 NLKWLETFSKYDLYSKSKVRIDVEKVKPYYLSLIEKYFPAKLKW 304 (304)
Q Consensus 261 ~l~wv~~Fn~yDLYSKs~~~pdve~lkPYY~~LIdKY~P~~l~W 304 (304)
||+||++||||||||||+++||||+|||||++|||||||++|+|
T Consensus 246 ~l~wv~~Fn~yDLYSKs~~~pdve~lkpYY~~LidKY~P~~l~W 289 (289)
T 2huo_A 246 MLPWVQEFNKFDLYTKCPDLPDVESLRPYYQGLIDKYCPGTLSW 289 (289)
T ss_dssp HHHHHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHHSCSCEEC
T ss_pred HHHHHHHhCcccccccCCCCCCHHHHHHHHHHHHHHHCCcccCC
Confidence 99999999999999999999999999999999999999999999
No 2
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=100.00 E-value=6.2e-136 Score=934.64 Aligned_cols=247 Identities=50% Similarity=0.954 Sum_probs=234.2
Q ss_pred HHHHHHHHHhhhcchHHHHHHHHHHhcCCCCccccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCCchh
Q 022006 55 EGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLH 134 (304)
Q Consensus 55 ~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~eA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~q 134 (304)
+||++|||+||++|||+||++||++|++++|++|||||||++||+||||||||++++||+|||||||+||+|+++.||||
T Consensus 3 ~~V~~~Yr~~h~~QTv~fv~~~~~~~~~~~~~~mti~ea~~~Ln~lvDeSDPD~~v~ql~HaLQTAe~ar~dg~d~dw~~ 82 (250)
T 2ibn_A 3 DRVFTTYKLMHTHQTVDFVRSKHAQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFH 82 (250)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhcCCcCCCCcccHHHHHHHHHHHHHHhCcChhHHH
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999966669999
Q ss_pred hhhhhhcccccccccCCCCCCCceeecCceeeecccCCCccccc-ccccCCCCCCCCCCCCCCcccCCCCccccccccCc
Q 022006 135 LTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHK-YFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGH 213 (304)
Q Consensus 135 LtGliHDLGKvl~l~~~~~~pQW~vvGDTfpVGC~f~~~iv~~e-~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGH 213 (304)
||||||||||+|++ +++|||+||||||||||+|+++|||++ +|++|||.+||+||||||||+||||||||+|||||
T Consensus 83 laaLlHDLGkll~~---~~~~qW~vvgdtfpvGc~f~~~iv~~e~~f~~NpD~~~~~Ynt~~GiY~~~CGLdnv~msWgh 159 (250)
T 2ibn_A 83 LVGLLHDLGKVLAL---FGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLDRVLMSWGH 159 (250)
T ss_dssp HHHHHTTGGGHHHH---TTCCGGGTSSCCCBSSSCCCTTSTTHHHHCTTCGGGGCTTTSSSSTTCCTTCCGGGSCBCCSH
T ss_pred HHHHHhccHhhhcc---cCCcchhhccCcccccCccchhhcchhhcccCCCCCCCccccccCCcccCCCCccceeecccc
Confidence 99999999999987 489999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhHHHHHHhCCCCCChhhHHHhHhcccccccccccccccCChhhHHHHHHHHHcCCccceecCCCCCChhhhhhhhHHH
Q 022006 214 DDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVKPYYLSL 293 (304)
Q Consensus 214 DEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~~D~~~l~wv~~Fn~yDLYSKs~~~pdve~lkPYY~~L 293 (304)
|||||+|||+|+||||+|||+|||||||||||++|||+||||++|.+||+||++||||||||||+++||||+|||||++|
T Consensus 160 DEYlY~Vlk~n~stLP~eaL~mIRyhSfypwH~~~~Y~~l~n~~D~~~l~~v~~Fn~yDLYsK~~~~pdve~l~pYY~~L 239 (250)
T 2ibn_A 160 DEYMYQVMKFNKFSLPPEAFYMIRFHSFYPWHTGRDYQQLCSQQDLAMLPWVREFNKFDLYTKCPDLPDVDKLRPYYQGL 239 (250)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHTTCHHHHTTCCCTTTCCHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHhccCchhcccchhhhcCHhHHHHHHHHHHhCCccccccCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCC
Q 022006 294 IEKYFPAKLKW 304 (304)
Q Consensus 294 IdKY~P~~l~W 304 (304)
||||||++|+|
T Consensus 240 idky~P~~l~W 250 (250)
T 2ibn_A 240 IDKYCPGILSW 250 (250)
T ss_dssp HHHHSCSCEEC
T ss_pred HHHHCCcccCC
Confidence 99999999999
No 3
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=93.13 E-value=0.051 Score=45.96 Aligned_cols=106 Identities=22% Similarity=0.229 Sum_probs=65.8
Q ss_pred ccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHh---hCC-CCCchhhhhhhhcccccccccCCCCCCCceeecCc
Q 022006 88 MSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK---DYP-DEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDT 163 (304)
Q Consensus 88 MsI~eA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~---d~p-~pdW~qLtGliHDLGKvl~l~~~~~~pQW~vvGDT 163 (304)
|++-++.+.|.+.+++ .-..|.+.+|...+. .++ +++-..+.||+||+||+..-
T Consensus 3 ~~~~~~~~~l~~~~~~-------~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk~~~~--------------- 60 (190)
T 3ccg_A 3 WSYDKITDYLMNNLGE-------KRYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKKLPG--------------- 60 (190)
T ss_dssp CCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTSCH---------------
T ss_pred CCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCH---------------
Confidence 7888999999887653 357899988876553 222 45668899999999997521
Q ss_pred eeeecccCCCccc-ccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHHhCCCCC-ChhhHHHhHhccc
Q 022006 164 FPVGCAFDESIVH-HKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTL-PSAALFIIRYHSF 241 (304)
Q Consensus 164 fpVGC~f~~~iv~-~e~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stL-P~eaL~mIRyHSF 241 (304)
+.|+- .. +.+.+... .+.-...--|.++=+.+++. ...+ |++.+..||+|..
T Consensus 61 --------~~il~~~~--~~~~~l~~---------------~E~~~~~~~H~~~Ga~il~~-~~~~~~~~i~~aI~~Hh~ 114 (190)
T 3ccg_A 61 --------EKIIEICT--NEGYELGD---------------EDIRNSYLLHGLAGRILAKK-VIGIDDEDVLNAIEFHTT 114 (190)
T ss_dssp --------HHHHHHHH--HTTCCCCH---------------HHHTTTTC-CHHHHHHHHHH-TTCCCCHHHHHHHHTTTT
T ss_pred --------HHHHHHHH--HcCCCCCH---------------HHHhHHHcchHHHHHHHHHH-hcCCCcHHHHHHHHHhcC
Confidence 01100 00 00000000 00101122488888999987 2456 8999999999974
No 4
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=93.10 E-value=0.057 Score=45.58 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=39.3
Q ss_pred ccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHh---hCC-CCCchhhhhhhhcccccc
Q 022006 88 MSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK---DYP-DEDWLHLTGLIHDLGKVL 146 (304)
Q Consensus 88 MsI~eA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~---d~p-~pdW~qLtGliHDLGKvl 146 (304)
|++-++.+.|.+.+++ .-..|.+.+|...+. .+| +++=.-+.||+||+||+.
T Consensus 2 ~~~~~~~~~l~~~l~~-------~~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIGk~~ 57 (188)
T 2o08_A 2 MNRGKALQLVKPHLTE-------HRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKFR 57 (188)
T ss_dssp CCHHHHHHHHGGGCCH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTS
T ss_pred CCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 7888999999887542 467899988776553 223 345678999999999985
No 5
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=92.53 E-value=0.072 Score=45.47 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=39.8
Q ss_pred ccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHh---hCC-CCCchhhhhhhhcccccc
Q 022006 88 MSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRK---DYP-DEDWLHLTGLIHDLGKVL 146 (304)
Q Consensus 88 MsI~eA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~---d~p-~pdW~qLtGliHDLGKvl 146 (304)
|++-++.+.|.+.+++ .-..|.+.+|...+. .+| +++-..++||+||+||+.
T Consensus 10 ~~~~~~~~~l~~~l~~-------~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK~~ 65 (196)
T 2ogi_A 10 LDRTELLSKVRHMMSD-------KRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKEL 65 (196)
T ss_dssp SCHHHHHHHHHTTSCH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTC
T ss_pred ccHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCCcC
Confidence 8899999999887653 357899988776553 223 456688999999999985
No 6
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=91.18 E-value=0.21 Score=45.07 Aligned_cols=129 Identities=19% Similarity=0.141 Sum_probs=78.2
Q ss_pred cCCCCccccHHHHHHHHh--------------hhhcCCCCCCCch-HHHHHHHHHHHHHh---hC--CCCCchhhhhhhh
Q 022006 81 GKLNRVEMSIWECCELLN--------------DVVDESDPDLDEP-QIEHLLQTAEAIRK---DY--PDEDWLHLTGLIH 140 (304)
Q Consensus 81 ~~~~~~~MsI~eA~e~Ln--------------~lvDeSDPD~dl~-qi~H~lQTAEaiR~---d~--p~pdW~qLtGliH 140 (304)
.++.+.--||.+|+-+|- ..+....+..+.. -..|.+.+|..++. .. ++++-+-++||+|
T Consensus 73 ~~~~~~I~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~hs~~va~~a~~la~~~~~~~~~~~~~agllH 152 (305)
T 3hc1_A 73 YSAARPISSIRDAVIYLGLDLLREAIFTCAIVDLFKTGKGPLNRSTLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLLH 152 (305)
T ss_dssp HHTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHTT
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 345667788999887762 1222222223322 35999998887663 22 3567788999999
Q ss_pred cccccccccCCCCCCCceeecCceeeecccCCCccccccc---ccCCCCCCCCCCCCCCcccCCCCccccccccCchhhH
Q 022006 141 DLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYF---KENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYM 217 (304)
Q Consensus 141 DLGKvl~l~~~~~~pQW~vvGDTfpVGC~f~~~iv~~e~F---~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYl 217 (304)
|+||+.....+ .+.|. +.. ...|.. -.-.+.-.|-..|.+.=
T Consensus 153 DIGkl~l~~~~---------p~~~~------------~il~~~~~~~~~--------------l~~~E~~~~~~~H~~iG 197 (305)
T 3hc1_A 153 DVGEVFINFFR---------GKEFS------------QVVTLVDEEKIT--------------FGQAEERLFGTSHCEVG 197 (305)
T ss_dssp THHHHHHHHHS---------HHHHH------------HHHHHHHHHCCC--------------HHHHHHHHHSSCHHHHH
T ss_pred HhhHHHHHHHH---------HHHHH------------HHHHHHHhcCCC--------------HHHHHHHHHCCCHHHHH
Confidence 99999854111 01110 000 001100 00123345556799999
Q ss_pred HHHHHhCCCCCChhhHHHhHhccccccccc
Q 022006 218 YLVAKENKTTLPSAALFIIRYHSFYALHKS 247 (304)
Q Consensus 218 Y~Vlk~n~stLP~eaL~mIRyHSFYpwH~~ 247 (304)
+.+++. ..+|++...+||+|-- ||...
T Consensus 198 ~~ll~~--w~lp~~i~~~I~~HHe-~~~~~ 224 (305)
T 3hc1_A 198 FALAKR--WSLNEFICDTILYHHD-IEAVP 224 (305)
T ss_dssp HHHHHH--TTCCHHHHHHHHHTTC-GGGCS
T ss_pred HHHHHH--cCCCHHHHHHHHHhCC-hhhcc
Confidence 999997 5899999999999864 55443
No 7
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A
Probab=90.35 E-value=0.21 Score=44.94 Aligned_cols=125 Identities=14% Similarity=0.244 Sum_probs=74.9
Q ss_pred hcCCCCccccHHHHHHHHh-----h---------hhcCCCC-CCCch-HHHHHHHHHHHHHh---hCC--CCCchhhhhh
Q 022006 80 YGKLNRVEMSIWECCELLN-----D---------VVDESDP-DLDEP-QIEHLLQTAEAIRK---DYP--DEDWLHLTGL 138 (304)
Q Consensus 80 ~~~~~~~~MsI~eA~e~Ln-----~---------lvDeSDP-D~dl~-qi~H~lQTAEaiR~---d~p--~pdW~qLtGl 138 (304)
+.++.+.--||.+|+.+|= + .++...+ ..++. -..|.+++|..++. ..+ +++-.-++||
T Consensus 61 ~~~~~~~I~si~~Av~~LG~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~hs~~~A~~a~~la~~~~~~~~~~~~~agL 140 (288)
T 3ljx_A 61 AQGTRRPVASVIDAIDLVGLPAVRQFALSLSLIDAHREGRCEAFDYAAYWQKSLARAVALQSITAQASTVAPKEAFTLGL 140 (288)
T ss_dssp C--CCSCCCSHHHHHHHHCHHHHHHHHHGGGC----CTTSCTTSCHHHHHHHHHHHHHHHHHHHHTSSSSCHHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 3345677789999998761 1 1121111 12333 35899999887764 223 5678899999
Q ss_pred hhcccccccccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHH
Q 022006 139 IHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMY 218 (304)
Q Consensus 139 iHDLGKvl~l~~~~~~pQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY 218 (304)
+||+||+++...+ | +.|. +.+.. +.. ++ . .-.++-.+...|.+.=+
T Consensus 141 LhdiGkl~l~~~~---p------~~~~------------~il~~-~~~-~~-------l----~~~E~~~lg~~H~~vGa 186 (288)
T 3ljx_A 141 LADVGRLALATAW---P------EEYS------------ECLRK-ADG-EA-------L----IALERERFATDHDELTR 186 (288)
T ss_dssp HTTHHHHHHHHHC---H------HHHH------------HHHHH-CCH-HH-------H----HHHHHHHHSSCHHHHHH
T ss_pred HHhccHHHHHHHH---H------HHHH------------HHHHH-hhc-CC-------H----HHHHHHHHccCHHHHHH
Confidence 9999999864111 1 0010 11110 000 00 0 11234455678999999
Q ss_pred HHHHhCCCCCChhhHHHhHhcc
Q 022006 219 LVAKENKTTLPSAALFIIRYHS 240 (304)
Q Consensus 219 ~Vlk~n~stLP~eaL~mIRyHS 240 (304)
.+++. -.||++...+||+|-
T Consensus 187 ~ll~~--W~lp~~i~~aI~~Hh 206 (288)
T 3ljx_A 187 MLLTD--WGFPQVFIDALQLSQ 206 (288)
T ss_dssp HHHHH--TTCCHHHHHHHHHTT
T ss_pred HHHHH--CCCCHHHHHHHHHHc
Confidence 99997 479999999999985
No 8
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=88.34 E-value=0.48 Score=42.16 Aligned_cols=119 Identities=13% Similarity=0.085 Sum_probs=72.7
Q ss_pred hcCCCCccccHHHHHHHH--------------hhhhcCCCCCC--Cch-HHHHHHHHHHHHH---hh--------CCCCC
Q 022006 80 YGKLNRVEMSIWECCELL--------------NDVVDESDPDL--DEP-QIEHLLQTAEAIR---KD--------YPDED 131 (304)
Q Consensus 80 ~~~~~~~~MsI~eA~e~L--------------n~lvDeSDPD~--dl~-qi~H~lQTAEaiR---~d--------~p~pd 131 (304)
+..+.+.--||.+|+-.| ..+++...|-. ... -..|.+.+|..++ +. ..+++
T Consensus 69 ~~~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hs~~vA~~a~~la~~~~~~~~~~~~~~~ 148 (281)
T 3i7a_A 69 LYSRGVPAENINSAVTRIGLTQIKSIATSVAMEQLFISTNEMVWEVMDEVWRTSIDVTAAACSLLQIYNKKHPGSGLNYD 148 (281)
T ss_dssp TTCSSSCCCSHHHHHHHHCTTTHHHHHHHHTTGGGSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCHH
T ss_pred HhCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCHH
Confidence 445667778999999876 12333322221 112 3588888875544 22 24567
Q ss_pred chhhhhhhhcccccccccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCcccccccc
Q 022006 132 WLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSW 211 (304)
Q Consensus 132 W~qLtGliHDLGKvl~l~~~~~~pQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSW 211 (304)
=.-++||+||+||+..+... +.+| +.+. + +. -++ -.+..
T Consensus 149 ~~~laGLLHdiGkl~l~~~~----------~~~~------------~~l~-~-----~~------------~~~-~~~~~ 187 (281)
T 3i7a_A 149 TLTLAGLVHNIGALPVLTEA----------EAHP------------EMFT-T-----IE------------HLR-SLVRK 187 (281)
T ss_dssp HHHHHHHHTTTTHHHHHHHH----------HHCG------------GGCC-C-----HH------------HHH-HHHHH
T ss_pred HHHHHHHHHHCCHHHHHHhH----------HhhH------------HHhc-C-----hH------------HHH-HHHhC
Confidence 78899999999999753111 0111 1111 0 00 011 22345
Q ss_pred CchhhHHHHHHhCCCCCChhhHHHhHhccc
Q 022006 212 GHDDYMYLVAKENKTTLPSAALFIIRYHSF 241 (304)
Q Consensus 212 GHDEYlY~Vlk~n~stLP~eaL~mIRyHSF 241 (304)
.|.+.=+.+++. -.+|++...+||+|-=
T Consensus 188 ~H~~iGa~ll~~--w~lp~~i~~ai~~Hh~ 215 (281)
T 3i7a_A 188 MQGPIGRAVLKS--WDFAPEVMEVVERWAD 215 (281)
T ss_dssp HHHHHHHHHHHH--TTCCHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHH--CCCCHHHHHHHHHHcC
Confidence 699999999997 4799999999999864
No 9
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=85.47 E-value=0.62 Score=40.63 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=32.7
Q ss_pred HHHHHHHHhhhhcCCCCCCCchHHHHHHH---HHHHH-HhhC-CCCCchhhhhhhhcccc
Q 022006 90 IWECCELLNDVVDESDPDLDEPQIEHLLQ---TAEAI-RKDY-PDEDWLHLTGLIHDLGK 144 (304)
Q Consensus 90 I~eA~e~Ln~lvDeSDPD~dl~qi~H~lQ---TAEai-R~d~-p~pdW~qLtGliHDLGK 144 (304)
|-++.+.+...+...|+.- .+.|.+. +|..| .+.. .+++-+.+++|+||+||
T Consensus 7 i~~~~~~v~~~~~~~~~~H---~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk 63 (225)
T 2qgs_A 7 IKKAYEYMKSFHQHDTTGH---DIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVD 63 (225)
T ss_dssp HHHHHHHHHHHTTTCSSCH---HHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHhcCCCcc---CHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCC
Confidence 3444455555555444443 4566655 45556 5433 47788999999999997
No 10
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=82.57 E-value=0.99 Score=39.89 Aligned_cols=56 Identities=13% Similarity=0.235 Sum_probs=39.7
Q ss_pred HHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhhC-CCCCchhhhhhhhccccc
Q 022006 90 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDY-PDEDWLHLTGLIHDLGKV 145 (304)
Q Consensus 90 I~eA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~-p~pdW~qLtGliHDLGKv 145 (304)
|..+.+.+.+.....||.-++.-+.-.+.+|..|-+.. .+++-+.+++|+||+||.
T Consensus 7 i~~~~~~v~~~l~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~~ 63 (223)
T 3djb_A 7 IEKTITFVKHILEKDASGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADE 63 (223)
T ss_dssp HHHHHHHHHHHTTSSSCTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC-
T ss_pred HHHHHHHHHHHhhcCCCcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 44455556666666677777666666677777776543 467889999999999983
No 11
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=82.04 E-value=0.85 Score=40.57 Aligned_cols=123 Identities=13% Similarity=0.124 Sum_probs=71.4
Q ss_pred CCCCccccHHHHHHHHh--------------hhhcCCCCCCCchH-HHHHHHHHHHHHhh----CCCCCchhhhhhhhcc
Q 022006 82 KLNRVEMSIWECCELLN--------------DVVDESDPDLDEPQ-IEHLLQTAEAIRKD----YPDEDWLHLTGLIHDL 142 (304)
Q Consensus 82 ~~~~~~MsI~eA~e~Ln--------------~lvDeSDPD~dl~q-i~H~lQTAEaiR~d----~p~pdW~qLtGliHDL 142 (304)
++.+.--||.+|+-.|= ..++. .|..++.. ..|.+.+|..++.- -.+++=.-++||+||+
T Consensus 62 ~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~hs~~~a~~a~~la~~~~~~~~~~~~agLLhdi 140 (275)
T 3m1t_A 62 GCSREVGTIDDAVVRLGMQTLRTLVIASAVVGAVPK-VEGFDLADFWGNTFEVAIICQELAKRLGTLPEEAFTCGILHSI 140 (275)
T ss_dssp ----CCCSHHHHHHHHCHHHHHHHHHHHHHHHHCCC-CTTCCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCccCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 34556778888887761 12222 23334433 47999888766531 2356778899999999
Q ss_pred cccccccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHH
Q 022006 143 GKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAK 222 (304)
Q Consensus 143 GKvl~l~~~~~~pQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk 222 (304)
||++....+ |++. . .|. +..+ +. .+. .-.+.-.+...|.+.=+.+++
T Consensus 141 Gkl~l~~~~---p~~~------~-------~i~--~~~~--~~--~~~-----------~~~E~~~lg~~H~~vGa~ll~ 187 (275)
T 3m1t_A 141 GELLIVNGD---PAVA------A-------TIS--AAVA--DG--ADR-----------NLMEKELLGYDNAEIGALLAQ 187 (275)
T ss_dssp HHHHHHHHC---HHHH------H-------HHH--HHHH--TT--CCH-----------HHHHHHHHSSCHHHHHHHHHH
T ss_pred cHHHHHHHC---HHHH------H-------HHH--HHHh--CC--CCH-----------HHHHHHHHCCCHHHHHHHHHH
Confidence 999864111 1110 0 000 0000 00 000 112334455679999999999
Q ss_pred hCCCCCChhhHHHhHhcc
Q 022006 223 ENKTTLPSAALFIIRYHS 240 (304)
Q Consensus 223 ~n~stLP~eaL~mIRyHS 240 (304)
. -.||++....||||-
T Consensus 188 ~--W~lp~~i~~aI~~Hh 203 (275)
T 3m1t_A 188 S--WKFTPHLVKGIQFQN 203 (275)
T ss_dssp H--TTCCHHHHHHHHTTT
T ss_pred H--CCCCHHHHHHHHHhC
Confidence 7 479999999999985
No 12
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=80.00 E-value=1.3 Score=38.04 Aligned_cols=55 Identities=15% Similarity=0.211 Sum_probs=31.4
Q ss_pred HHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhh-CCCCCchhhhhhhhcccccc
Q 022006 92 ECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKD-YPDEDWLHLTGLIHDLGKVL 146 (304)
Q Consensus 92 eA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d-~p~pdW~qLtGliHDLGKvl 146 (304)
++.+.+...+...|+.-++.-+.-.+++|..|.+. -.+++-+.+++|+||+||.-
T Consensus 9 ~~~~~v~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDig~~~ 64 (209)
T 3b57_A 9 SAKNWMHSHFENETTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIK 64 (209)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCccc
Confidence 34444555554445555555555556666666653 25778889999999999853
No 13
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=79.42 E-value=1.4 Score=37.79 Aligned_cols=53 Identities=21% Similarity=0.189 Sum_probs=32.4
Q ss_pred HHHHHHHHhhhhcCCCCCCCchHHHHHHHHH---HHHHhhC-CCCCchhhhhhhhccccc
Q 022006 90 IWECCELLNDVVDESDPDLDEPQIEHLLQTA---EAIRKDY-PDEDWLHLTGLIHDLGKV 145 (304)
Q Consensus 90 I~eA~e~Ln~lvDeSDPD~dl~qi~H~lQTA---EaiR~d~-p~pdW~qLtGliHDLGKv 145 (304)
+.++.+.+.......|+..+ ..|.+.++ ..|.+.. .+++-+.++||+||+|+-
T Consensus 15 ~~~~~~~v~~~~~~~~~~h~---~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDIg~~ 71 (220)
T 2pq7_A 15 REILNIVREAFKDYDDPAHD---ISHTFRVMENASEIASREKCDLQKAIIAALLHDIKRP 71 (220)
T ss_dssp HHHHHHHHHHHTTCCCTTTS---HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHhcCCCchh---HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCc
Confidence 44555666665554444444 45555544 4444432 366788999999999863
No 14
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=79.16 E-value=0.92 Score=39.75 Aligned_cols=57 Identities=9% Similarity=0.089 Sum_probs=38.6
Q ss_pred ccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhhC-CCCCchhhhhhhhcccc
Q 022006 88 MSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDY-PDEDWLHLTGLIHDLGK 144 (304)
Q Consensus 88 MsI~eA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~-p~pdW~qLtGliHDLGK 144 (304)
+-|.++.+.+...+...++.-++.-+.-.+++|..|.+.. .+++-+.+.+|+||+||
T Consensus 10 ~~i~~~~~~v~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDigk 67 (231)
T 2pjq_A 10 TQLTAIQTYALQKLAHDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVID 67 (231)
T ss_dssp HHHHHHHHHHHTSSTTCCSSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc
Confidence 3455566666666655555565555555566677776532 57788899999999998
No 15
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=78.96 E-value=1.7 Score=38.51 Aligned_cols=56 Identities=18% Similarity=0.121 Sum_probs=36.1
Q ss_pred HHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhhC-CCCCchhhhhhhhccccc
Q 022006 90 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDY-PDEDWLHLTGLIHDLGKV 145 (304)
Q Consensus 90 I~eA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~-p~pdW~qLtGliHDLGKv 145 (304)
|..+.+.+.+.....||.-++.-+.-...+|..|-+.. .+++-+.+++|+||+||.
T Consensus 7 i~~~~~~v~~~l~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~~ 63 (223)
T 3dto_A 7 LQSAEAWVKKQLMDEYSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDD 63 (223)
T ss_dssp HHHHHHHHHHTTTTC----CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC-
T ss_pred HHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 44455556666666677766666666677777775442 466788999999999985
No 16
>3sk9_A Putative uncharacterized protein TTHB187; crispr, CAS, HD domain, nuclease, hydrolase; 1.80A {Thermus thermophilus HB8} PDB: 3skd_A
Probab=77.07 E-value=1.3 Score=40.42 Aligned_cols=46 Identities=33% Similarity=0.504 Sum_probs=33.8
Q ss_pred CCCCCCCchHHHHHHHHHHHHHh---------------hCCC-----CCchhhhhhhhcccccccccCC
Q 022006 103 ESDPDLDEPQIEHLLQTAEAIRK---------------DYPD-----EDWLHLTGLIHDLGKVLNLPSF 151 (304)
Q Consensus 103 eSDPD~dl~qi~H~lQTAEaiR~---------------d~p~-----pdW~qLtGliHDLGKvl~l~~~ 151 (304)
.|+.+- .|...|++-||+..+. ..|- .+|+...|++||+||.- +.|
T Consensus 18 ks~~~~-~~L~~HllDvAava~~L~~~~~~~~r~~la~~~g~~~~~~~~~~~~~~~lHDiGK~~--~~f 83 (265)
T 3sk9_A 18 KSGNPF-HPLLAHMLDTAAVALAVLRMEPPRTRALYAEDWGLPEEGALAWAAALVGLHDLGKAS--PVF 83 (265)
T ss_dssp BSSSTT-SBHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTSCHHHHHHHHHHHHTTTTGGGCS--GGG
T ss_pred cCCCCc-ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccccc--HHH
Confidence 344443 8889999999988664 1232 36899999999999995 445
No 17
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=73.60 E-value=1.6 Score=40.12 Aligned_cols=42 Identities=17% Similarity=0.104 Sum_probs=28.1
Q ss_pred CchhhHHHHHHhCCCCCChhhHHHhHhcccccccccccccccCCh
Q 022006 212 GHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMNE 256 (304)
Q Consensus 212 GHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~ 256 (304)
.|.++=|.++.. +..+|++++.+||+|-= .|--.| =..|..+
T Consensus 231 ~H~~~G~~~ll~-~~~~~~~v~~~i~~HHE-r~dGsG-P~gl~g~ 272 (328)
T 3tm8_A 231 KHPIEGAQKVQD-KKHFDQTVINIIGQHEE-TINGTG-PKGLREK 272 (328)
T ss_dssp HHHHHHHHHHTT-CTTSCHHHHHHHHHTTC-CTBSCS-TTCCBGG
T ss_pred HHHHHHHHHHHH-hCCCcHHHHHHHHHhcC-CCCCCC-CCCCCcc
Confidence 388999994433 36799999999999942 233345 4445443
No 18
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=72.93 E-value=1.7 Score=38.74 Aligned_cols=132 Identities=14% Similarity=0.078 Sum_probs=73.2
Q ss_pred hcCCCCccccHHHHHHHHh-----hhh------cC--CCCC---CCch-HHHHHHHHHHHHHhh---C--CCCCchhhhh
Q 022006 80 YGKLNRVEMSIWECCELLN-----DVV------DE--SDPD---LDEP-QIEHLLQTAEAIRKD---Y--PDEDWLHLTG 137 (304)
Q Consensus 80 ~~~~~~~~MsI~eA~e~Ln-----~lv------De--SDPD---~dl~-qi~H~lQTAEaiR~d---~--p~pdW~qLtG 137 (304)
+..+.+.--||.+|+.+|- +++ +. ++++ .+.. -..|.+.+|..+++- . .+++=.-++|
T Consensus 76 ~~~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hs~~va~~a~~la~~~~~~~~e~a~~aG 155 (297)
T 1vqr_A 76 YYGFTREITTINQVITLLGVGNIINIVMADSIRDNFKIDVSPYGLNTQNFLKTCNEEATFIANWLNDEDKKLSHLLVPCA 155 (297)
T ss_dssp GGTCTTCCCSHHHHHHHHCHHHHHHHHHCCCTTCCCCCCCGGGTCCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 4455666789999998772 111 11 1111 1222 347877776655432 1 2345677899
Q ss_pred hhhcccccccccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhhH
Q 022006 138 LIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYM 217 (304)
Q Consensus 138 liHDLGKvl~l~~~~~~pQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYl 217 (304)
|+||+||+.....+....+- .++..... + | .+-.-.+.-.+...|.+.=
T Consensus 156 LLHDIGkl~l~~~~p~~~~~-------------------~~il~~~~---------~-~--~~l~~~E~~~~g~~H~~iG 204 (297)
T 1vqr_A 156 MLLRLGIVIFSNFLIQNHKD-------------------KDFLAFLN---------K-N--ENLALAENEFLGVDHISFL 204 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCH-------------------HHHHHHHH---------H-H--CCHHHHHHHHTSSCHHHHH
T ss_pred HHHHccHHHHHHHChhhhhH-------------------HHHHHHHH---------c-C--CCHHHHHHHHHCCCHHHHH
Confidence 99999999853111000000 00000000 0 0 0001133445566899999
Q ss_pred HHHHHhCCCCCChhhHHHhHhccccccc
Q 022006 218 YLVAKENKTTLPSAALFIIRYHSFYALH 245 (304)
Q Consensus 218 Y~Vlk~n~stLP~eaL~mIRyHSFYpwH 245 (304)
+.+++.. .+|++...+||+|-- ||.
T Consensus 205 a~ll~~w--~lp~~i~~aI~~Hh~-~~~ 229 (297)
T 1vqr_A 205 GFLLHRW--NFDDVLIESICFVRT-PHA 229 (297)
T ss_dssp HHHHHHT--TCCHHHHHHHHTTTC-GGG
T ss_pred HHHHHHC--CCCHHHHHHHHHhcC-hhh
Confidence 9999874 799999999999963 443
No 19
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=70.48 E-value=1.8 Score=41.64 Aligned_cols=128 Identities=16% Similarity=0.273 Sum_probs=74.2
Q ss_pred hcCCCCccccHHHHHH-HH--h---------hhhcC---C-C-CCCCchHHHHHHHHHHHHHh---hCC-----CCCchh
Q 022006 80 YGKLNRVEMSIWECCE-LL--N---------DVVDE---S-D-PDLDEPQIEHLLQTAEAIRK---DYP-----DEDWLH 134 (304)
Q Consensus 80 ~~~~~~~~MsI~eA~e-~L--n---------~lvDe---S-D-PD~dl~qi~H~lQTAEaiR~---d~p-----~pdW~q 134 (304)
|.++.+.--||.+|+- +| + .+.+. + + +..-..-..|.+.+|..++. ..+ +++=.-
T Consensus 230 ~y~~~~~I~si~~Av~rlLG~~~v~~l~~~~~l~~~~~~~~~~~~~~~~~w~hs~~~A~~a~~LA~~~~~~~~~~~~~af 309 (457)
T 3mem_A 230 FYAAAGRVHSVHDAVSRVLGFDLVMNLAMGLALGRALKHPQDHPDGYVDYWQQAIWQAQSAGILASMMPRGQRPLFGLAY 309 (457)
T ss_dssp TTGGGCCCCCHHHHHHTTTCHHHHHHHHHHHHHHTTSCCCSCCCTTSCCHHHHHHHHHHHHHHHHHHSCGGGCCCHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHhcHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHH
Confidence 3345567789999997 43 1 11121 1 1 11112346899988876653 222 445678
Q ss_pred hhhhhhcccccccccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCch
Q 022006 135 LTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHD 214 (304)
Q Consensus 135 LtGliHDLGKvl~l~~~~~~pQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHD 214 (304)
++||+||+||+++...+ |+. |. .|. +..+.||... -.-.++-.+...|.
T Consensus 310 laGLLhDIGkl~l~~~~---p~~------~~-------~i~--~~~~~~~~~~-------------~~~~E~~~lg~~H~ 358 (457)
T 3mem_A 310 LAGLLHNFGHLVLAQVF---PPH------FK-------LVC--RSLEVSPHID-------------SSVIEHYLLGITRE 358 (457)
T ss_dssp HHHHHTTTHHHHHHHHS---HHH------HH-------HHH--HHHHHCTTSC-------------HHHHHHHHHSSCHH
T ss_pred HHHHHHHhhHHHHHHHC---HHH------HH-------HHH--HHHHhcCCCC-------------HHHHHHHHHcCCHH
Confidence 99999999999964111 110 00 000 0001122110 00123445667899
Q ss_pred hhHHHHHHhCCCCCChhhHHHhHhcc
Q 022006 215 DYMYLVAKENKTTLPSAALFIIRYHS 240 (304)
Q Consensus 215 EYlY~Vlk~n~stLP~eaL~mIRyHS 240 (304)
+.=+.+++. -.||++-...||||-
T Consensus 359 ~vGa~Ll~~--W~lP~~i~~aI~~HH 382 (457)
T 3mem_A 359 QIAAQLMEN--WGMPDEVTLAIRYQK 382 (457)
T ss_dssp HHHHHHHHH--TTCCHHHHHHHHHTT
T ss_pred HHHHHHHHH--cCCCHHHHHHHHHhc
Confidence 999999987 479999999999986
No 20
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii}
Probab=69.25 E-value=1.5 Score=42.84 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=27.4
Q ss_pred hHHHHHHH-H---HHHHHhhCCCC-----Cchhhhhhhhccccccc
Q 022006 111 PQIEHLLQ-T---AEAIRKDYPDE-----DWLHLTGLIHDLGKVLN 147 (304)
Q Consensus 111 ~qi~H~lQ-T---AEaiR~d~p~p-----dW~qLtGliHDLGKvl~ 147 (304)
.-++|.|. + |.++++.||-- +=+-..||+||+||++.
T Consensus 75 GLLeHtLerVa~~A~~l~~~YP~~~~~Er~~l~~aALLHDIGKl~t 120 (393)
T 3kq5_A 75 SLMNEGLLRGVNSLNHYIQNHPEATPLERYALFSAGLLLEVAHAVV 120 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTTTTHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhccchhee
Confidence 45789998 5 67788888642 14456679999999974
No 21
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=46.40 E-value=9.4 Score=32.95 Aligned_cols=36 Identities=25% Similarity=0.247 Sum_probs=26.2
Q ss_pred chHHHHHHHHHHH---HHhhCCCCCc-----hhhhhhhhcccccc
Q 022006 110 EPQIEHLLQTAEA---IRKDYPDEDW-----LHLTGLIHDLGKVL 146 (304)
Q Consensus 110 l~qi~H~lQTAEa---iR~d~p~pdW-----~qLtGliHDLGKvl 146 (304)
.+.-+|.+++|-. +-. ++.-|+ .-..+|+||+|.+.
T Consensus 37 EsVAeHS~~vA~iA~~la~-~~~vd~~~~~r~~~maL~HDl~E~~ 80 (173)
T 1ynb_A 37 ESVAEHNFRAAIIAFILAL-KSGESVEKACKAATAALFHDLHEAR 80 (173)
T ss_dssp CBHHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHTTTTHHH
T ss_pred CcHHHHHHHHHHHHHHHhh-hcCCChhHHHHHHHHHHHcchHHhh
Confidence 5567899988875 433 355666 45679999999987
No 22
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=44.45 E-value=8.5 Score=34.38 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=25.2
Q ss_pred CCCCCchHHHHHHHHHHHHHhhC-CCCCchhhhhhhhccccc
Q 022006 105 DPDLDEPQIEHLLQTAEAIRKDY-PDEDWLHLTGLIHDLGKV 145 (304)
Q Consensus 105 DPD~dl~qi~H~lQTAEaiR~d~-p~pdW~qLtGliHDLGKv 145 (304)
|+.-++.-+.-.+.+|..|.+.. .+++-+.+++|+||+||.
T Consensus 22 ~~~H~~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 22 DAAHDVCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63 (239)
T ss_dssp -----CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC-
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 44445555555556666665433 477889999999999995
No 23
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=44.36 E-value=28 Score=29.76 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=33.9
Q ss_pred HHHHHHHHhhhhcCC-CCCC-CchHHHHHHHHHHHHHhhCCCCCc-hhhhhhhhcc
Q 022006 90 IWECCELLNDVVDES-DPDL-DEPQIEHLLQTAEAIRKDYPDEDW-LHLTGLIHDL 142 (304)
Q Consensus 90 I~eA~e~Ln~lvDeS-DPD~-dl~qi~H~lQTAEaiR~d~p~pdW-~qLtGliHDL 142 (304)
|.+|+++-....... ..+. ..|-|.|.+++|+.+..+.+-.|- ...+||+||.
T Consensus 7 l~~A~~~A~~aH~gQ~rk~~~G~PYi~Hpl~VA~il~~~~~~~d~~~i~AALLHDv 62 (178)
T 3nr1_A 7 LLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDT 62 (178)
T ss_dssp HHHHHHHHHHHTTTCBCSSTTCCBTTHHHHHHHHHHHHTSCCCCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHcccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhH
Confidence 445555554433322 2232 578899999999999766343354 5678899985
No 24
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=43.82 E-value=31 Score=29.45 Aligned_cols=53 Identities=17% Similarity=0.324 Sum_probs=35.5
Q ss_pred HHHHHHHHhhhhcCC-CCC-CCchHHHHHHHHHHHHHhhCCCCCc-hhhhhhhhcc
Q 022006 90 IWECCELLNDVVDES-DPD-LDEPQIEHLLQTAEAIRKDYPDEDW-LHLTGLIHDL 142 (304)
Q Consensus 90 I~eA~e~Ln~lvDeS-DPD-~dl~qi~H~lQTAEaiR~d~p~pdW-~qLtGliHDL 142 (304)
|.+|+++-....... +.+ +..|-|.|.+.+|+.+..+.+-.|- ...+||+||.
T Consensus 9 l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~~D~~~i~AAlLHDv 64 (179)
T 3nqw_A 9 FMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDV 64 (179)
T ss_dssp HHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCCCCHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHhccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhH
Confidence 556666665554333 233 5688999999999999855342233 4458899985
No 25
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=42.97 E-value=12 Score=35.64 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=27.2
Q ss_pred chHHHHHHHHHHHHHhh---CCCC--Cchhhhhhhhccccccc
Q 022006 110 EPQIEHLLQTAEAIRKD---YPDE--DWLHLTGLIHDLGKVLN 147 (304)
Q Consensus 110 l~qi~H~lQTAEaiR~d---~p~p--dW~qLtGliHDLGKvl~ 147 (304)
-.-++|.+.+|...|+- .+-+ .-..++||+||+|+.-+
T Consensus 49 ~~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~~pf 91 (371)
T 2hek_A 49 HTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHPPF 91 (371)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCCSS
T ss_pred CChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc
Confidence 44578888888776642 2322 46789999999999873
No 26
>3m5f_A Metal dependent phosphohydrolase; CAS3, prokaryotic immune system, HD-motif, structural genomics, PSI-2; 2.30A {Methanocaldococcus jannaschii} PDB: 3s4l_A
Probab=40.78 E-value=12 Score=34.31 Aligned_cols=17 Identities=24% Similarity=0.579 Sum_probs=14.5
Q ss_pred Cchhhhhhhhccccccc
Q 022006 131 DWLHLTGLIHDLGKVLN 147 (304)
Q Consensus 131 dW~qLtGliHDLGKvl~ 147 (304)
+++-++|+.||+||.--
T Consensus 57 ~ll~~a~llHDiGKa~~ 73 (244)
T 3m5f_A 57 EFMKILIKLHDIGKASK 73 (244)
T ss_dssp HHHHHHHHHTTGGGGBH
T ss_pred HHHHHHHHHcccccCCH
Confidence 56778999999999973
No 27
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=40.27 E-value=8.7 Score=33.97 Aligned_cols=44 Identities=23% Similarity=0.287 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHHHhhCC-CCC--chhhhhhhhcccccccccCCCCCCCceeecCceee
Q 022006 110 EPQIEHLLQTAEAIRKDYP-DED--WLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPV 166 (304)
Q Consensus 110 l~qi~H~lQTAEaiR~d~p-~pd--W~qLtGliHDLGKvl~l~~~~~~pQW~vvGDTfpV 166 (304)
.+.-+|.+++|-..---.+ .-| =.-..+|+|||+.++ +||+.|+
T Consensus 44 ESVAEHS~~vAliA~~l~~~~vD~~r~~~maL~HDl~E~~-------------tGDitp~ 90 (204)
T 4dmb_A 44 ESVSDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAECI-------------VGDIAPA 90 (204)
T ss_dssp CBHHHHHHHHHHHHHHSCCTTSCHHHHHHHHHHTTTTHHH-------------HCCCCGG
T ss_pred CcHHHHHHHHHHHHHHHccccCCHHHHHHHHHhcchHHhh-------------cCCCccc
Confidence 4567899998876554322 123 345568999999987 5788663
No 28
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=39.69 E-value=10 Score=32.89 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHHHH-------hhCC---CCCchhhhhhhhccccccc
Q 022006 110 EPQIEHLLQTAEAIR-------KDYP---DEDWLHLTGLIHDLGKVLN 147 (304)
Q Consensus 110 l~qi~H~lQTAEaiR-------~d~p---~pdW~qLtGliHDLGKvl~ 147 (304)
.+..+|.+++|-... +.+| +++=..+.||+||+|+++.
T Consensus 30 EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E~~~ 77 (201)
T 2paq_A 30 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLT 77 (201)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhcccccccC
Confidence 456789998885432 2333 3334455699999999983
No 29
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=34.67 E-value=33 Score=22.14 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=21.3
Q ss_pred cccCchhhHHHHHHhCCCCCChhhHHHhHhccc
Q 022006 209 MSWGHDDYMYLVAKENKTTLPSAALFIIRYHSF 241 (304)
Q Consensus 209 mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSF 241 (304)
-||--..+--+|||. -|+|+|-|.|
T Consensus 6 kswkckafkqrvlkr--------llamlrqhaf 30 (30)
T 2l3i_A 6 KSWKCKAFKQRVLKR--------LLAMLRQHAF 30 (30)
T ss_dssp SCSCCCHHHHHHHHH--------HHHHHHTCCC
T ss_pred cchhHHHHHHHHHHH--------HHHHHHHhcC
Confidence 478888888899986 6999999987
No 30
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=33.77 E-value=37 Score=32.82 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=38.1
Q ss_pred HHHHHHHhcCCCCccccHHHHHHHHhhhhcC-------CCCCCCchHHHHHHHHHHHHH
Q 022006 73 VKKMREEYGKLNRVEMSIWECCELLNDVVDE-------SDPDLDEPQIEHLLQTAEAIR 124 (304)
Q Consensus 73 v~~~~~~~~~~~~~~MsI~eA~e~Ln~lvDe-------SDPD~dl~qi~H~lQTAEaiR 124 (304)
.++...+|...-|.+-++.+|++.|+.|-.+ .+...+.-.+.+++.+|++|-
T Consensus 443 l~~~m~~~~gi~R~~~~L~~a~~~l~~l~~~~~~~~~~~~~~~~~~e~~~~~~~a~~~~ 501 (540)
T 1chu_A 443 LRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAHFRVSNNLLELRNLVQVAELIV 501 (540)
T ss_dssp HHHHHHHHSSSSBCHHHHHHHHHHHHHHHHHHHHHHTTBCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcccCHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHH
Confidence 4556677888889999999999999877432 222223457889999999873
No 31
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=27.86 E-value=23 Score=33.99 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHH-HHhhCCCCCchhhhhhhh-cccccc
Q 022006 111 PQIEHLLQTAEA-IRKDYPDEDWLHLTGLIH-DLGKVL 146 (304)
Q Consensus 111 ~qi~H~lQTAEa-iR~d~p~pdW~qLtGliH-DLGKvl 146 (304)
...+|++++... |..+.+.+.++-|++|+| |+||-.
T Consensus 266 ~v~~h~L~~~d~~i~~~~~~~~~L~lAALLH~di~K~~ 303 (415)
T 3aql_A 266 RIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETA 303 (415)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhHhcCcchhhhh
Confidence 456888887544 666667788999999999 999954
No 32
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=25.97 E-value=91 Score=26.56 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHhcCCC---CccccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhh
Q 022006 69 TYDFVKKMREEYGKLN---RVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKD 126 (304)
Q Consensus 69 Tvdfv~~~~~~~~~~~---~~~MsI~eA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d 126 (304)
|-+=..++|++|-.-- -++.-||+|+..--+++...| ++||.+|-..
T Consensus 34 Tr~qL~~~R~EFWDT~p~~~Gr~EIW~ALraA~~~~e~~D-----------l~tAQ~Ilda 83 (137)
T 2ksn_A 34 TDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESND-----------HELAQAIIDG 83 (137)
T ss_dssp SHHHHHHHHHHHHTTSSTTCCCHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHH
Confidence 5555778999997654 578899999998888776555 5788888766
No 33
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=25.75 E-value=41 Score=29.84 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=37.3
Q ss_pred ccccHHHHHHHHhhhhcCC---CCCCCchHHHHHHHHHHHHHhhCCCCCc-hhhhhhhhcccccc
Q 022006 86 VEMSIWECCELLNDVVDES---DPDLDEPQIEHLLQTAEAIRKDYPDEDW-LHLTGLIHDLGKVL 146 (304)
Q Consensus 86 ~~MsI~eA~e~Ln~lvDeS---DPD~dl~qi~H~lQTAEaiR~d~p~pdW-~qLtGliHDLGKvl 146 (304)
..+.|.+-++.|..+.--+ .-..-.+.-+|.+++|.....-+|.-++ ..+.+|+||++.++
T Consensus 27 ~~i~i~dia~~Lk~i~R~~~~~~~~~~eSVAeHS~~va~ia~~l~~~~~~r~~~~aL~HD~~E~~ 91 (207)
T 2gz4_A 27 LDVEIADIAHGLARVARWNGQTRGDHAFTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEYV 91 (207)
T ss_dssp GGCCHHHHHHHHTTCBSGGGCCSSSSCCBHHHHHHHHHHHHHHHCTTCCHHHHHHHHTTTTTHHH
T ss_pred hhhhHHHHHHHHhhCcccCCCCCCCCCccHHHHHHHHHHHHHHHCCCCCHHHHHHHHhcCchHhh
Confidence 4455556666554321111 1123467789999999877643332222 56778999999988
No 34
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=25.55 E-value=49 Score=31.91 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=35.7
Q ss_pred HHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCCchhhhhhhhcc
Q 022006 90 IWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDL 142 (304)
Q Consensus 90 I~eA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDL 142 (304)
|.+|+++-.......-..+..|-|.|.+.+|+.+..-..+++ ...+||+||.
T Consensus 28 l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~-~i~AALLHDv 79 (393)
T 1vj7_A 28 VKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAV-TVACGFLHDV 79 (393)
T ss_dssp HHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHH-HHHHHHHTTH
T ss_pred HHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHH-HHHHHHhhhH
Confidence 566777666554333333557889999999999886523333 6678999995
No 35
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=21.10 E-value=30 Score=33.10 Aligned_cols=17 Identities=41% Similarity=0.499 Sum_probs=13.7
Q ss_pred CCchhhhhhhhcccccc
Q 022006 130 EDWLHLTGLIHDLGKVL 146 (304)
Q Consensus 130 pdW~qLtGliHDLGKvl 146 (304)
++-....||+||+|+.-
T Consensus 98 ~~l~~~a~LlHDiGh~P 114 (376)
T 2dqb_A 98 EDLTEAIALSHDLGHPP 114 (376)
T ss_dssp HHHHHHHHHHTTTTCCS
T ss_pred HHHHHHHHHHHhcCCCc
Confidence 45677899999999864
No 36
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.72 E-value=22 Score=34.40 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=10.1
Q ss_pred hhhhhhhhcccccc
Q 022006 133 LHLTGLIHDLGKVL 146 (304)
Q Consensus 133 ~qLtGliHDLGKvl 146 (304)
..++||+||+|+-=
T Consensus 89 ~~~AaLlHDiGh~P 102 (410)
T 2q14_A 89 VQAAILLHDIGHGP 102 (410)
T ss_dssp HHHHHHHTTTTCCT
T ss_pred HHHHHHHhccCCCc
Confidence 46778888888743
No 37
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=20.69 E-value=64 Score=30.40 Aligned_cols=39 Identities=8% Similarity=0.017 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCCCccccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHH
Q 022006 73 VKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAI 123 (304)
Q Consensus 73 v~~~~~~~~~~~~~~MsI~eA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEai 123 (304)
.++...+|...-|.+-++.+|++.|+.|-.+ |+++|++|
T Consensus 398 l~~~m~~~~g~~r~~~~l~~~~~~~~~~~~~------------~~~~a~~~ 436 (472)
T 2e5v_A 398 IRRINWENVGIIRNEEKLVKAINTYSSSTQN------------EAIISYLT 436 (472)
T ss_dssp HHHHHHHHSSSSBCHHHHHHHHHHHTTCCCH------------HHHHHHHH
T ss_pred HHHHHHHhcCcccCHHHHHHHHHHHHHHHHH------------HHHHHHHH
Confidence 5556677888889999999999999988532 78888776
Done!