BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022007
(304 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CFS|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase
pdb|2CFT|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase With Its Substrate
Length = 298
Score = 184 bits (467), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 163/303 (53%), Gaps = 24/303 (7%)
Query: 11 ELLSANNITALFDSVDAFLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRS 68
E L + + LFDC V+W G++ + G + L+ L GK +FV+NNSRR+
Sbjct: 7 ERLRGAALRDVLGRAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRA 66
Query: 69 RRQYAHKFHSLGVS-VSEDEIFSSSFAAAMYLKVNNFP----QENKVYVIGGEGILEELR 123
R + A +F LG + +++FSS+ AA L+ P V+V+GGEG+ ELR
Sbjct: 67 RPELALRFARLGFGGLRAEQLFSSALCAARLLR-QRLPGPPDAPGAVFVLGGEGLRAELR 125
Query: 124 QAGYTGLGGPEDGEKRVQLKSNCLFEHDKNVGAVVVGLDPHINYYKLQYGTLCIRENPGC 183
AG G P G+ V AV+VG D H ++ KL+ +R +P C
Sbjct: 126 AAGLRLAGDPSAGDGAA-----------PRVRAVLVGYDEHFSFAKLREACAHLR-DPEC 173
Query: 184 LFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASS 243
L +AT+RD L+D PG G + AA+ ++ ++ +VVGKPS +M E +++ F I +
Sbjct: 174 LLVATDRDPWHPLSDGSRTPGTGSLAAAVETASGRQALVVGKPSPYMFECITENFSIDPA 233
Query: 244 RMCMVGDRLDTDILFGQNAGCKTLLVLSGVT----TQSTLQDPSNNIQPDYYTNQVSDIL 299
R MVGDRL+TDILFG G T+L L+GV+ Q+ L +++ P YY ++D+
Sbjct: 234 RTLMVGDRLETDILFGHRCGMTTVLTLTGVSRLEEAQAYLAAGQHDLVPHYYVESIADLT 293
Query: 300 ELL 302
E L
Sbjct: 294 EGL 296
>pdb|2OYC|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
pdb|2P27|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
With Mg2+ At 1.9 A Resolution
pdb|2P69|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
With Plp
Length = 306
Score = 179 bits (453), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 161/303 (53%), Gaps = 24/303 (7%)
Query: 11 ELLSANNITALFDSVDAFLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRS 68
E L + + LFDC V+W G++ + G + L+ L GK +FV+NNSRR+
Sbjct: 7 ERLRGAALRDVLGRAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRA 66
Query: 69 RRQYAHKFHSLGVS-VSEDEIFSSSFAAAMYLKVNNFP----QENKVYVIGGEGILEELR 123
R + A +F LG + +++FSS+ AA L+ P V+V+GGEG+ ELR
Sbjct: 67 RPELALRFARLGFGGLRAEQLFSSALCAARLLR-QRLPGPPDAPGAVFVLGGEGLRAELR 125
Query: 124 QAGYTGLGGPEDGEKRVQLKSNCLFEHDKNVGAVVVGLDPHINYYKLQYGTLCIRENPGC 183
AG G P G+ V AV+VG D H ++ KL+ +R +P C
Sbjct: 126 AAGLRLAGDPSAGDGAA-----------PRVRAVLVGYDEHFSFAKLREACAHLR-DPEC 173
Query: 184 LFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASS 243
L +AT+RD L+D PG G + AA+ ++ ++ +VVGKPS + E +++ F I +
Sbjct: 174 LLVATDRDPWHPLSDGSRTPGTGSLAAAVETASGRQALVVGKPSPYXFECITENFSIDPA 233
Query: 244 RMCMVGDRLDTDILFGQNAGCKTLLVLSGVT----TQSTLQDPSNNIQPDYYTNQVSDIL 299
R VGDRL+TDILFG G T+L L+GV+ Q+ L +++ P YY ++D+
Sbjct: 234 RTLXVGDRLETDILFGHRCGXTTVLTLTGVSRLEEAQAYLAAGQHDLVPHYYVESIADLT 293
Query: 300 ELL 302
E L
Sbjct: 294 EGL 296
>pdb|2CFR|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase
Length = 298
Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 161/303 (53%), Gaps = 24/303 (7%)
Query: 11 ELLSANNITALFDSVDAFLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRS 68
E L + + LFDC V+W G++ + G + L+ L GK +FV+NNSRR+
Sbjct: 7 ERLRGAALRDVLGRAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRA 66
Query: 69 RRQYAHKFHSLGVS-VSEDEIFSSSFAAAMYLKVNNFP----QENKVYVIGGEGILEELR 123
R + A +F LG + +++FSS+ AA L+ P V+V+GGEG+ ELR
Sbjct: 67 RPELALRFARLGFGGLRAEQLFSSALCAARLLR-QRLPGPPDAPGAVFVLGGEGLRAELR 125
Query: 124 QAGYTGLGGPEDGEKRVQLKSNCLFEHDKNVGAVVVGLDPHINYYKLQYGTLCIRENPGC 183
AG G P G+ V AV+VG D H ++ KL+ +R +P C
Sbjct: 126 AAGLRLAGDPSAGDGAA-----------PRVRAVLVGYDEHFSFAKLREACAHLR-DPEC 173
Query: 184 LFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASS 243
L +AT+RD L+D PG G + AA+ ++ ++ +VVGKPS + E +++ F I +
Sbjct: 174 LLVATDRDPWHPLSDGSRTPGTGSLAAAVETASGRQALVVGKPSPYXFECITENFSIDPA 233
Query: 244 RMCMVGDRLDTDILFGQNAGCKTLLVLSGVT----TQSTLQDPSNNIQPDYYTNQVSDIL 299
R VGDRL+TDILFG G T+L L+GV+ Q+ L +++ P YY ++D+
Sbjct: 234 RTLXVGDRLETDILFGHRCGXTTVLTLTGVSRLEEAQAYLAAGQHDLVPHYYVESIADLT 293
Query: 300 ELL 302
E L
Sbjct: 294 EGL 296
>pdb|1ZJJ|A Chain A, Crystal Structure Of Hypothetical Protein Ph1952 From
Pyrococcus Horikoshii Ot3
pdb|1ZJJ|B Chain B, Crystal Structure Of Hypothetical Protein Ph1952 From
Pyrococcus Horikoshii Ot3
Length = 263
Score = 164 bits (414), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 99/276 (35%), Positives = 157/276 (56%), Gaps = 22/276 (7%)
Query: 28 FLFDCVIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDE 87
F D V+++G++ I GVR+ ++ L+ +G F+TNNS ++ Y K +G+ VS
Sbjct: 6 FDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGIDVSSSI 65
Query: 88 IFSSSFAAAMYLKVNNFPQENKVYVIGGEGILEELRQAGYTGLGGPEDGEKRVQLKSNCL 147
I +S A +Y+ + P K++VIGGEG+++E++ G+ G+ ++ +
Sbjct: 66 IITSGLATRLYMSKHLDP--GKIFVIGGEGLVKEMQALGW-GIVTLDEARQGSW------ 116
Query: 148 FEHDKNVGAVVVGLDPHINYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGC 207
K V VVVGLDP + Y KL+Y TL IR G FI TN DA + +PGAG
Sbjct: 117 ----KEVKHVVVGLDPDLTYEKLKYATLAIRN--GATFIGTNPDAT-LPGEEGIYPGAGS 169
Query: 208 MVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTL 267
++AA+ +T EPI++GKP+ M E++ + F + MVGDRLDTDI F + G K +
Sbjct: 170 IIAALKVATNVEPIIIGKPNEPMYEVVREMF--PGEELWMVGDRLDTDIAFAKKFGMKAI 227
Query: 268 LVLSGVTTQSTLQD-PSNNIQPDYYTNQVSDILELL 302
+VL+GV S+L+D + +PD V ++++ L
Sbjct: 228 MVLTGV---SSLEDIKKSEYKPDLVLPSVYELIDYL 260
>pdb|3PDW|A Chain A, Crystal Structure Of Putative P-Nitrophenyl Phosphatase
From Bacillus Subtilis
Length = 266
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 127/252 (50%), Gaps = 25/252 (9%)
Query: 30 FDCVIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIF 89
D ++ G + I+ + + L+ +G +FVTNNS R+ +Q A K S + +E+++F
Sbjct: 13 LDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIPATEEQVF 72
Query: 90 SSSFAAAMYLKVNNFPQENKVYVIGGEGILEELRQAGYTGLGGPEDGEKRVQLKSNCLFE 149
++S A A ++ ++ VYVIG EGI + + + G T GG
Sbjct: 73 TTSMATAQHIAQQK--KDASVYVIGEEGIRQAIEENGLT-FGG----------------- 112
Query: 150 HDKNVGAVVVGLDPHINYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMV 209
+N VVVG+D I Y K G L IR G FI+TN D + T+ PG G +
Sbjct: 113 --ENADFVVVGIDRSITYEKFAVGCLAIRN--GARFISTNGD-IAIPTERGLLPGNGSLT 167
Query: 210 AAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLV 269
+ + ST +P+ +GKP + +ME + S MVGD TDI+ G NAG TLLV
Sbjct: 168 SVLTVSTGVQPVFIGKPESIIMEQAMRVLGTDVSETLMVGDNYATDIMAGINAGMDTLLV 227
Query: 270 LSGVTTQSTLQD 281
+GVT + + D
Sbjct: 228 HTGVTKREHMTD 239
>pdb|3QGM|A Chain A, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|B Chain B, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|C Chain C, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|D Chain D, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
Length = 268
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 140/267 (52%), Gaps = 35/267 (13%)
Query: 41 IDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFAAAMYLK 100
++GV++ L+ GKK+IFV+NNS RSRR + S G+ V EDEI +++A A ++
Sbjct: 30 VEGVKK----LKELGKKIIFVSNNSTRSRRILLERLRSFGLEVGEDEILVATYATARFIA 85
Query: 101 VNNFPQENKVYVIGGEGILEELRQAGYTGLGGPEDGEKRVQLKSNCLFEHDKNVGAVVVG 160
KV+ G EG++EELR AG + ++D+ +VVG
Sbjct: 86 REK--PNAKVFTTGEEGLIEELRLAGLE------------------IVDYDE-AEYLVVG 124
Query: 161 LDPHINYYKLQYGTL--CIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEK 218
+ IN ++L L C+R G +IATN D + D PG G ++ A+ T +
Sbjct: 125 SNRKIN-FELXTKALRACLR---GIRYIATNPDRIFPAED-GPIPGTGXIIGALYWXTGR 179
Query: 219 EP-IVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQS 277
EP +VVGKPS + + + + +VGD++D D+ G+ G +T+LVL+GVTT+
Sbjct: 180 EPDVVVGKPSEVIXREALDILGLDAKDVAVVGDQIDVDVAAGKAIGAETVLVLTGVTTRE 239
Query: 278 TLQD--PSNNIQPDYYTNQVSDILELL 302
L + ++PDY N + D +E L
Sbjct: 240 NLDQXIERHGLKPDYVFNSLKDXVEAL 266
>pdb|3EPR|A Chain A, Crystal Structure Of Putative Had Superfamily Hydrolase
From Streptococcus Agalactiae
Length = 264
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 122/261 (46%), Gaps = 27/261 (10%)
Query: 30 FDCVIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIF 89
D I+KG I + ++ L+ KG + VTNN+ R+ V + I+
Sbjct: 12 LDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETPLETIY 71
Query: 90 SSSFAAAMYLKVNNFPQENKVYVIGGEGILEELRQAGYTGLGGPEDGEKRVQLKSNCLFE 149
+++ A Y+ N+ + YVIG EG+ + + AGY E
Sbjct: 72 TATMATVDYM--NDMNRGKTAYVIGEEGLKKAIADAGY--------------------VE 109
Query: 150 HDKNVGAVVVGLDPHINYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMV 209
KN VVVGLD ++ Y KL TL I+ G LFI TN D + T+ PGAG +
Sbjct: 110 DTKNPAYVVVGLDWNVTYDKLATATLAIQN--GALFIGTNPD-LNIPTERGLLPGAGSLN 166
Query: 210 AAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLV 269
A + A+T +P+ +GKP+ +M + I ++ MVGD TDI+ G N TLLV
Sbjct: 167 ALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLV 226
Query: 270 LSGVTTQSTLQDPSNNIQPDY 290
+G TT + P IQP Y
Sbjct: 227 TTGFTTVEEV--PDLPIQPSY 245
>pdb|1VJR|A Chain A, Crystal Structure Of 4-nitrophenylphosphatase (tm1742)
From Thermotoga Maritima At 2.40 A Resolution
Length = 271
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 139/287 (48%), Gaps = 42/287 (14%)
Query: 21 LFDSVDAFLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHS 78
+ D ++ F+ D + D L+ G + L+ L+ K K+ +F TNNS + Y K +
Sbjct: 13 VLDKIELFILDXDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRN 72
Query: 79 LGVSVSEDEIFSSSFAAAMYLKVNNFPQENKVYVIGGEGILEELRQAGYTGLGGPEDGEK 138
GV V +D + +S I E L+ + LG P
Sbjct: 73 XGVDVPDDAVVTSG-------------------EITAEHXLKRFGRCRIFLLGTP----- 108
Query: 139 RVQLKSNCLFE------HDKNVGAVVVGLDPHINYYKLQYGTLCIRENPGCLFIATNRDA 192
QLK +FE ++N VV+G D + Y +L+ + +R+ G +IAT+ D
Sbjct: 109 --QLKK--VFEAYGHVIDEENPDFVVLGFDKTLTYERLKKACILLRK--GKFYIATHPD- 161
Query: 193 VGHLTDLQEWPGAGCMVAAMCASTEKEP-IVVGKPSTFMMEILSKKFQIASSRMCMVGDR 251
+ + P AG + AA+ AST ++P ++ GKP+ +++++S+KF + R VGDR
Sbjct: 162 INCPSKEGPVPDAGSIXAAIEASTGRKPDLIAGKPNPLVVDVISEKFGVPKERXAXVGDR 221
Query: 252 LDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDI 298
L TD+ G+NAG ++LVL+G TT L+ +PD+ + ++
Sbjct: 222 LYTDVKLGKNAGIVSILVLTGETTPEDLE--RAETKPDFVFKNLGEL 266
>pdb|1YV9|A Chain A, Crystal Structure Of A Had-Like Phosphatase From
Enterococcus Faecalis V583
pdb|1YV9|B Chain B, Crystal Structure Of A Had-Like Phosphatase From
Enterococcus Faecalis V583
Length = 264
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 132/270 (48%), Gaps = 30/270 (11%)
Query: 30 FDCVIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKF-HSLGVSVSEDEI 88
D I+ G + I ++ ++ L+ K +FVTNN+ +S A + + + V +
Sbjct: 12 LDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIHVPASLV 71
Query: 89 FSSSFAAAMYLKVNNFPQENKVYVIGGEGILEELRQAGYTGLGGPEDGEKRVQLKSNCLF 148
++++ A Y+K N + KV+VIG G+++ + +AG F
Sbjct: 72 YTATLATIDYMKEAN--RGKKVFVIGEAGLIDLILEAG---------------------F 108
Query: 149 EHDK-NVGAVVVGLDPHINYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGC 207
E D+ N VVVGLD ++Y K+ TL I++ G LFI TN D T+ PGAG
Sbjct: 109 EWDETNPDYVVVGLDTELSYEKVVLATLAIQK--GALFIGTNPDK-NIPTERGLLPGAGS 165
Query: 208 MVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTL 267
+V + +T+ +P+ +GKP +ME + ++ MVGD +TDI G G +L
Sbjct: 166 VVTFVETATQTKPVYIGKPKAIIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQNGIDSL 225
Query: 268 LVLSGVTTQSTLQDPSNNIQPDYYTNQVSD 297
LV SG T +S + P+ P Y + + +
Sbjct: 226 LVTSGFTPKSAV--PTLPTPPTYVVDSLDE 253
>pdb|1PW5|A Chain A, Putative Nagd Protein
Length = 253
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 135/278 (48%), Gaps = 42/278 (15%)
Query: 22 FDSVDAFLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSL 79
D ++ F+ D + D L+ G + L+ L+ K K+ +F TNNS + Y K +
Sbjct: 2 LDKIELFILDXDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNX 61
Query: 80 GVSVSEDEIFSSSFAAAMYLKVNNFPQENKVYVIGGEGILEELRQAGYTGLGGPEDGEKR 139
GV V +D + +S I E L+ + LG P
Sbjct: 62 GVDVPDDAVVTSG-------------------EITAEHXLKRFGRCRIFLLGTP------ 96
Query: 140 VQLKSNCLFE------HDKNVGAVVVGLDPHINYYKLQYGTLCIRENPGCLFIATNRDAV 193
QLK +FE ++N VV+G D + Y +L+ + +R+ G +IAT+ D +
Sbjct: 97 -QLKK--VFEAYGHVIDEENPDFVVLGFDKTLTYERLKKACILLRK--GKFYIATHPD-I 150
Query: 194 GHLTDLQEWPGAGCMVAAMCASTEKEP-IVVGKPSTFMMEILSKKFQIASSRMCMVGDRL 252
+ P AG + AA+ AST ++P ++ GKP+ +++++S+KF + R VGDRL
Sbjct: 151 NCPSKEGPVPDAGSIXAAIEASTGRKPDLIAGKPNPLVVDVISEKFGVPKERXAXVGDRL 210
Query: 253 DTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDY 290
TD+ G+NAG ++LVL+G TT L+ +PD+
Sbjct: 211 YTDVKLGKNAGIVSILVLTGETTPEDLE--RAETKPDF 246
>pdb|1YS9|A Chain A, Crystal Sructure Of Phosphatase Spy1043 From Streptococcus
Pyogenes
Length = 254
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 124/265 (46%), Gaps = 34/265 (12%)
Query: 30 FDCVIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRS----RRQYAHKFHSLGVSVSE 85
D I++G I + + L+ +G + VTNN+ R+ + A++FH V S
Sbjct: 10 LDGTIYQGKNRIPAGERFIKRLQERGIPYLLVTNNTTRTPEMVQSMLANQFH---VETSI 66
Query: 86 DEIFSSSFAAAMYLKVNNFPQENKVYVIGGEGILEELRQAGYTGLGGPEDGEKRVQLKSN 145
+ I++++ A Y+ N+ + YVIG G+ + AGY
Sbjct: 67 ETIYTATMATVDYM--NDMNRGKTAYVIGETGLKSAIAAAGY------------------ 106
Query: 146 CLFEHDKNVGAVVVGLDPHINYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGA 205
E +N VVVGLD + Y L TL I++ G LFI TN D + T+ PGA
Sbjct: 107 --VEELENPAYVVVGLDSQVTYEMLAIATLAIQK--GALFIGTNPD-LNIPTERGLMPGA 161
Query: 206 GCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCK 265
G + A + A+T +P+ +GKP+ +M + I S MVGD TDI+ G
Sbjct: 162 GALNALLEAATRVKPVFIGKPNAIIMNKSLEVLGIQRSEAVMVGDNYLTDIMAGIQNDIA 221
Query: 266 TLLVLSGVTTQSTLQDPSNNIQPDY 290
T+LV +G T + P+ IQPD+
Sbjct: 222 TILVTTGFTRPEEV--PTLPIQPDH 244
>pdb|1WVI|A Chain A, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|B Chain B, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|C Chain C, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|D Chain D, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
Length = 257
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 122/269 (45%), Gaps = 28/269 (10%)
Query: 30 FDCVIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFH-SLGVSVSEDEI 88
D I+KG I + L+ + I VTNN+ R+ S + + I
Sbjct: 10 LDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLATSFNIKTPLETI 69
Query: 89 FSSSFAAAMYLKVNNFPQENKVYVIGGEGILEELRQAGYTGLGGPEDGEKRVQLKSNCLF 148
++++ A Y+ N+ + YVIG G+ + + +AGY ED E
Sbjct: 70 YTATLATIDYM--NDMKRGKTAYVIGETGLKKAVAEAGYR-----EDSE----------- 111
Query: 149 EHDKNVGAVVVGLDPHINYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCM 208
N VVVGLD ++ Y KL TL I++ G +FI TN D + T+ PGAG +
Sbjct: 112 ----NPAYVVVGLDTNLTYEKLTLATLAIQK--GAVFIGTNPD-LNIPTERGLLPGAGAI 164
Query: 209 VAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLL 268
+ + +T +PI++GKP +M + + MVGD TDI G TLL
Sbjct: 165 LFLLEKATRVKPIIIGKPEAVIMNKALDRLGVKRHEAIMVGDNYLTDITAGIKNDIATLL 224
Query: 269 VLSGVTTQSTLQDPSNNIQPDYYTNQVSD 297
V +G T + P+ IQPD+ + +++
Sbjct: 225 VTTGFTKPEEV--PALPIQPDFVLSSLAE 251
>pdb|1YDF|A Chain A, Crystal Structure Of A Had-like Phosphatase From
Streptococcus Pneumoniae
Length = 257
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 113/246 (45%), Gaps = 26/246 (10%)
Query: 30 FDCVIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKF-HSLGVSVSEDEI 88
D I+KG I + L+ + +FVTNN+ R+ + + +
Sbjct: 10 LDGTIYKGKDRIPAGETFVHELQKRDIPYLFVTNNTTRTPESVKEMLAQNFNIDTPLSTV 69
Query: 89 FSSSFAAAMYLKVNNFPQENKVYVIGGEGILEELRQAGYTGLGGPEDGEKRVQLKSNCLF 148
++++ A Y+ N+ E VYV+G G+ E ++ AGY ED EK
Sbjct: 70 YTATLATIDYM--NDLGLEKTVYVVGEAGLKEAIKAAGYV-----EDKEKPAY------- 115
Query: 149 EHDKNVGAVVVGLDPHINYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCM 208
VVVGLD ++Y K TL I++ G FI TN D + T+ PGAG +
Sbjct: 116 --------VVVGLDWQVDYEKFATATLAIQK--GAHFIGTNPD-LNIPTERGLLPGAGSL 164
Query: 209 VAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLL 268
+ + +T +P+ +GKP+ +M+ + + + MVGD TDI G + G TLL
Sbjct: 165 ITLLEVATRVKPVYIGKPNAIIMDKAVEHLGLEREELIMVGDNYLTDIRAGIDNGIPTLL 224
Query: 269 VLSGVT 274
V +G T
Sbjct: 225 VTTGFT 230
>pdb|2C4N|A Chain A, Nagd From E.Coli K-12 Strain
Length = 250
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 123/268 (45%), Gaps = 31/268 (11%)
Query: 31 DCVIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFS 90
D V+ + + G + L + KG L+ +TN ++ + A++F + GV V + ++
Sbjct: 11 DGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYT 70
Query: 91 SSFAAAMYLKVNNFPQENKVYVIGGEGILEELRQAGYTGLGGPEDGEKRVQLKSNCLFEH 150
S+ A A +L+ + K YV+G ++ EL +AG+T
Sbjct: 71 SAMATADFLRRQ---EGKKAYVVGEGALIHELYKAGFT--------------------IT 107
Query: 151 DKNVGAVVVGLDPHINYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVA 210
D N V+VG N+ + + G FIATN D G +P G + A
Sbjct: 108 DVNPDFVIVGETRSYNWDMMHKAAYFVAN--GARFIATNPDTHGR----GFYPACGALCA 161
Query: 211 AMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVL 270
+ + ++P VGKPS +++ K Q S +VGD L TDIL G AG +T+LVL
Sbjct: 162 GIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVL 221
Query: 271 SGVTTQSTLQDPSNNIQPDYYTNQVSDI 298
SGV++ + S +P + V++I
Sbjct: 222 SGVSSLDDID--SMPFRPSWIYPSVAEI 247
>pdb|2HX1|A Chain A, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
pdb|2HX1|B Chain B, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
pdb|2HX1|C Chain C, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
pdb|2HX1|D Chain D, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
Length = 284
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 105/245 (42%), Gaps = 28/245 (11%)
Query: 40 LIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGV-SVSEDEIFSSSFAAAMY 98
L+ G+ T D L+++G+ VTN++ RS Q A +H LG+ S++ D+I SS Y
Sbjct: 31 LLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGLFSITADKIISSGXITKEY 90
Query: 99 --LKVNNFPQENKVYVIGGEGILEELRQAGYTGLGGPEDGEKRVQLKSNCLFEHDKNVG- 155
LKV+ G L A Y DG K + + + D N+G
Sbjct: 91 IDLKVDG----------GIVAYLGTANSANYL----VSDGIKXLPVSA----IDDSNIGE 132
Query: 156 --AVVVGLDPHINYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMC 213
A+V+ D N++ T+ + I N D LT G + +
Sbjct: 133 VNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANTDNTYPLTKTDVAIAIGGVATXIE 192
Query: 214 ASTEKEPIVVGKPST----FMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLV 269
+ + I GKP + F + L +K +I+ + VGD L TDIL G G T LV
Sbjct: 193 SILGRRFIRFGKPDSQXFXFAYDXLRQKXEISKREILXVGDTLHTDILGGNKFGLDTALV 252
Query: 270 LSGVT 274
L+G T
Sbjct: 253 LTGNT 257
>pdb|2HO4|A Chain A, Crystal Structure Of Protein From Mouse Mm.236127
pdb|2HO4|B Chain B, Crystal Structure Of Protein From Mouse Mm.236127
Length = 259
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 100/237 (42%), Gaps = 34/237 (14%)
Query: 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFAAAM 97
D + G ++ L LR+ + FVTN ++ +++ + L +SEDEIF+S AA
Sbjct: 22 DAAVPGAQEALKRLRATSVXVRFVTNTTKETKKDLLERLKKLEFEISEDEIFTSLTAA-- 79
Query: 98 YLKVNNFPQENKVYVIGGEGILEELRQAGYTGLGGPEDGEKRVQLKSNCLFEHDKNVGAV 157
N ++ +V +L++ +TG+ ++ AV
Sbjct: 80 ----RNLIEQKQVR---PXLLLDDRALPEFTGV-------------------QTQDPNAV 113
Query: 158 VVGLDP-HINYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCAST 216
V+GL P H +Y L + + G IA ++ D G G V A+ +T
Sbjct: 114 VIGLAPEHFHYQLLNQAFRLLLD--GAPLIAIHKARYYKRKDGLAL-GPGPFVTALEYAT 170
Query: 217 EKEPIVVGKPS-TFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSG 272
+ + VVGKP TF +E L + A +GD D+ QN G +LV +G
Sbjct: 171 DTKAXVVGKPEKTFFLEAL-RDADCAPEEAVXIGDDCRDDVDGAQNIGXLGILVKTG 226
>pdb|3HLT|A Chain A, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 2 (Hdhd2)
pdb|3HLT|C Chain C, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 2 (Hdhd2)
Length = 266
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 109/269 (40%), Gaps = 36/269 (13%)
Query: 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFAAAM 97
D + G ++ L LR + FVTN ++ S++ + L +SEDEIF+S AA
Sbjct: 22 DAAVPGAQEALKRLRGASVIIRFVTNTTKESKQDLLERLRKLEFDISEDEIFTSLTAARS 81
Query: 98 YLKVNNFPQENKVYVIGGEGILEELRQAGYTGLGGPEDGEKRVQLKSNCLFEHDKNVGAV 157
L+ Q + ++ + + + G+ + AV
Sbjct: 82 LLERK---QVRPMLLVDDRALPD------FKGI-------------------QTSDPNAV 113
Query: 158 VVGLDP-HINYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCAST 216
V+GL P H +Y L + + G IA ++ D G G V A+ +T
Sbjct: 114 VMGLAPEHFHYQILNQAFRLLLD--GAPLIAIHKARYYKRKDGLAL-GPGPFVTALEYAT 170
Query: 217 EKEPIVVGKPS-TFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTT 275
+ + VVGKP TF +E L + M+GD D+ Q+ G +LV +G
Sbjct: 171 DTKATVVGKPEKTFFLEAL-RGTGCEPEEAVMIGDDCRDDVGGAQDVGMLGILVKTGKYR 229
Query: 276 QSTLQ--DPSNNIQPDYYTNQVSDILELL 302
S + +P + + + + V IL+ L
Sbjct: 230 ASDEEKINPPPYLTCESFPHAVDHILQHL 258
>pdb|2X4D|A Chain A, Crystal Structure Of Human Phospholysine Phosphohistidine
Inorganic Pyrophosphate Phosphatase Lhpp
pdb|2X4D|B Chain B, Crystal Structure Of Human Phospholysine Phosphohistidine
Inorganic Pyrophosphate Phosphatase Lhpp
Length = 271
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 98/254 (38%), Gaps = 30/254 (11%)
Query: 51 LRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFAAAMYLKVNNFPQENKV 110
L+ K+ F TN S SR + + LG +SE E+ + + AA LK +
Sbjct: 44 LKRSRLKVRFCTNESAASRAELVGQLQRLGFDISEQEVTAPAPAACQILKERGL----RP 99
Query: 111 YVIGGEGILEELRQAGYTGLGGPEDGEKRVQLKSNCLFEHDKNVGAVVVGLDPHINYYKL 170
Y++ +G+ E Q + NC+ D ++
Sbjct: 100 YLLIHDGVRSEFDQIDTS--------------NPNCVVIADAGESFSYQNMNNAFQVLME 145
Query: 171 QYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFM 230
+ I G + AT+ G + D+ G + A+ + + VVGKPS
Sbjct: 146 LEKPVLISLGKGRYYAATS----GLMLDV------GPYMKALEYACGIKAEVVGKPSPEF 195
Query: 231 MEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDY 290
+ + + + + M+GD + D+ Q G + L V +G S P ++ D
Sbjct: 196 FKSALQAIGVEAHQAVMIGDDIVGDVGGAQRCGMRALQVRTGKFRPSDEHHP--EVKADG 253
Query: 291 YTNQVSDILELLGQ 304
Y + +++ ++LL Q
Sbjct: 254 YVDNLAEAVDLLLQ 267
>pdb|1U73|A Chain A, Crystal Structure Of A Dimeric Acidic Platelet Aggregation
Inhibitor And Hypotensive Phospholipase A2 From Bothrops
Jararacussu
pdb|1U73|B Chain B, Crystal Structure Of A Dimeric Acidic Platelet Aggregation
Inhibitor And Hypotensive Phospholipase A2 From Bothrops
Jararacussu
pdb|1Z76|A Chain A, Crystal Structure Of An Acidic Phospholipase A2 (Btha-I)
From Bothrops Jararacussu Venom Complexed With P-
Bromophenacyl Bromide
pdb|1Z76|B Chain B, Crystal Structure Of An Acidic Phospholipase A2 (Btha-I)
From Bothrops Jararacussu Venom Complexed With P-
Bromophenacyl Bromide
Length = 122
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 111 YVIGGEGILEELRQAGYTGLGG---PEDGEKRVQLKSNCLFEHDKNVGAVVVGLDPHINY 167
YV+G G+L+ L Y GLGG P D R C F HD G V G DP I+
Sbjct: 11 YVMGESGVLQYLSYGCYCGLGGQGQPTDATDR------CCFVHDCCYGK-VTGCDPKIDS 63
Query: 168 Y 168
Y
Sbjct: 64 Y 64
>pdb|2HOQ|A Chain A, Crystal Structure Of The Probable Haloacid Dehalogenase
(Ph1655) From Pyrococcus Horikoshii Ot3
Length = 241
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 223 VGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDP 282
V KP + + K F + MVGDRL +DI + G KT+ G ++ L+
Sbjct: 148 VKKPHPKIFKKALKAFNVKPEEALMVGDRLYSDIYGAKRVGMKTVWFRYGKHSERELE-- 205
Query: 283 SNNIQPDYYTNQVSDILELLGQ 304
DY + + +LE+L +
Sbjct: 206 -YRKYADYEIDNLESLLEVLAR 226
>pdb|1UMV|X Chain X, Crystal Structure Of An Acidic, Non-Myotoxic Phospholipase
A2 From The Venom Of Bothrops Jararacussu
pdb|1ZL7|A Chain A, Crystal Structure Of Catalytically-Active Phospholipase A2
With Bound Calcium
pdb|1ZLB|A Chain A, Crystal Structure Of Catalytically-Active Phospholipase A2
In The Absence Of Calcium
Length = 122
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Query: 111 YVIGGEGILEELRQAGYTGLGG---PEDGEKRVQLKSNCLFEHDKNVGAVVVGLDPHIN- 166
YV+G G+L+ L Y GLGG P D R C F HD G V G +P I+
Sbjct: 11 YVMGESGVLQYLSYGCYCGLGGQGQPTDATDR------CCFVHDCCYGK-VTGCNPKIDS 63
Query: 167 --YYKLQYGTLCIRENP 181
Y K +C +NP
Sbjct: 64 YTYSKKNGDVVCGGDNP 80
>pdb|1AOK|B Chain B, Vipoxin Complex
Length = 122
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 125 AGYTGLGGPEDGEKRVQLKSNCLFEHDKNVGAVVVGLDPH--INYYKLQYGTLCIRENPG 182
G+ G G P+D R C F HD G V G +P I YY + G + +N G
Sbjct: 28 CGWGGQGTPKDATDR------CCFVHDCCYGRVR-GCNPKLAIYYYSFKKGNIVCGKNNG 80
Query: 183 CL 184
CL
Sbjct: 81 CL 82
>pdb|2GO7|A Chain A, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
pdb|2GO7|B Chain B, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
pdb|2GO7|C Chain C, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
pdb|2GO7|D Chain D, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
Length = 207
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 223 VGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTL 267
V KPS L K+Q+ S +GDR D+ F QN+G +++
Sbjct: 138 VRKPSPEAATYLLDKYQLNSDNTYYIGDRT-LDVEFAQNSGIQSI 181
>pdb|3VI6|A Chain A, Crystal Structure Of Human L30e
Length = 125
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 12 LLSANNITALFDSVDAFLFDCVIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNS---RRS 68
+++A +S+++ L ++ K K + G +QTL ++R KL+ + NN R+S
Sbjct: 2 MVAAKKTKKSLESINSRLQ--LVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKS 59
Query: 69 RRQYAHKFHSLGV 81
+Y GV
Sbjct: 60 EIEYYAMLAKTGV 72
>pdb|2ZKR|6 Chain 6, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 115
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 12 LLSANNITALFDSVDAFLFDCVIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNS---RRS 68
+++A +S+++ L ++ K K + G +QTL ++R KL+ + NN R+S
Sbjct: 1 MVAAKKTKKSLESINSRLQ--LVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKS 58
Query: 69 RRQYAHKFHSLGV 81
+Y GV
Sbjct: 59 EIEYYAMLAKTGV 71
>pdb|3MUN|A Chain A, Appep_pepclose Closed State
pdb|3MUO|A Chain A, Appep_pepclose+pp Closed State
Length = 693
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 71 QYAHKFHSLGVSVSEDEIFSSSFAAAMYLKVNNFPQENKVYVIGG 115
+Y +H G ++ +F AAA YLK + + +++ + GG
Sbjct: 496 EYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGG 540
>pdb|3IUN|A Chain A, Appep_d622n Opened State
pdb|3IUQ|A Chain A, Appep_d622n+pp Closed State
pdb|3IUR|A Chain A, Appep_d266nx+h2h3 Opened State
Length = 693
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 71 QYAHKFHSLGVSVSEDEIFSSSFAAAMYLKVNNFPQENKVYVIGG 115
+Y +H G ++ +F AAA YLK + + +++ + GG
Sbjct: 496 EYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGG 540
>pdb|3IVM|A Chain A, Appep_wt+pp Closed State
Length = 693
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 71 QYAHKFHSLGVSVSEDEIFSSSFAAAMYLKVNNFPQENKVYVIGG 115
+Y +H G ++ +F AAA YLK + + +++ + GG
Sbjct: 496 EYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGG 540
>pdb|3IUJ|A Chain A, Appep_wt2 Opened State
pdb|3IUL|A Chain A, Appep_wt1 Opened State
pdb|3IUM|A Chain A, Appep_wtx Opened State
Length = 693
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 71 QYAHKFHSLGVSVSEDEIFSSSFAAAMYLKVNNFPQENKVYVIGG 115
+Y +H G ++ +F AAA YLK + + +++ + GG
Sbjct: 496 EYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGG 540
>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|B Chain B, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|C Chain C, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|D Chain D, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
Length = 449
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 104 FPQENKVYVIGGEGILEELRQAGYTGLGGPE 134
+P+ + G G +EELR GYTGL E
Sbjct: 193 YPETLWLAESAGSGFIEELRSQGYTGLSDSE 223
>pdb|4HCJ|A Chain A, Crystal Structure Of ThijPFPI DOMAIN PROTEIN FROM
BRACHYSPIRA Murdochii
Length = 177
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 6 GQAPAELLSANNITALFDSVDAFLFDCVIWKGDKLIDGVRQTLDVLRSKGKKLIFVTN 63
G A +L NI LF VDA FD V++ G G D R++G +F+ N
Sbjct: 46 GTAQGKLGGXTNIDLLFSEVDAVEFDAVVFVGGI---GCITLWDDWRTQGLAKLFLDN 100
>pdb|3RF6|A Chain A, Crystal Structure Of Glycerol-3 Phosphate Bound Had-Like
Phosphatase From Saccharomyces Cerevisiae
pdb|3RF6|B Chain B, Crystal Structure Of Glycerol-3 Phosphate Bound Had-Like
Phosphatase From Saccharomyces Cerevisiae
Length = 355
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 217 EKEPIVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQ 276
+K P++ KPST + MVGD +DI+ QN G + LV +GV +
Sbjct: 279 QKLPLLGTKPSTSPFHA-----------VFMVGDNPASDIIGAQNYGWNSCLVKTGVYNE 327
Query: 277 STLQDPSNNIQPDYYTNQVSD 297
D +P N V D
Sbjct: 328 G---DDLKECKPTLIVNDVFD 345
>pdb|2JG1|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|B Chain B, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|C Chain C, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|D Chain D, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
Length = 330
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 260 QNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELLGQ 304
QN G +L SG T Q+ L++P +P +S++ +LL Q
Sbjct: 174 QNKGVPVILDCSGATLQTVLENP---YKPTVIKPNISELYQLLNQ 215
>pdb|2JGV|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|B Chain B, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|C Chain C, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|D Chain D, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2Q5R|A Chain A, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|B Chain B, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|C Chain C, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|D Chain D, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
Length = 330
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 260 QNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELLGQ 304
QN G +L SG T Q+ L++P +P +S++ +LL Q
Sbjct: 174 QNKGVPVILDCSGATLQTVLENP---YKPTVIKPNISELYQLLNQ 215
>pdb|2GFH|A Chain A, Crystal Structure Of A N-acetylneuraminic Acid Phosphatase
(nanp) From Mus Musculus At 1.90 A Resolution
Length = 260
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 247 MVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILEL 301
MVGD L+TDI G NAG K + ++ P P Y VS +LEL
Sbjct: 198 MVGDTLETDIQGGLNAGLKATVWINKSGRVPLTSSP----MPHY---MVSSVLEL 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,075,352
Number of Sequences: 62578
Number of extensions: 372943
Number of successful extensions: 817
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 751
Number of HSP's gapped (non-prelim): 40
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)