Query 022007
Match_columns 304
No_of_seqs 233 out of 2230
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 07:19:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022007.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022007hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2882 p-Nitrophenyl phosphat 100.0 2E-50 4.3E-55 342.4 25.8 286 16-303 13-304 (306)
2 COG0647 NagD Predicted sugar p 100.0 1.7E-48 3.7E-53 334.8 27.0 262 19-303 2-266 (269)
3 PLN02645 phosphoglycolate phos 100.0 3.3E-46 7.1E-51 333.5 32.8 294 10-303 13-308 (311)
4 PRK10444 UMP phosphatase; Prov 100.0 6.9E-44 1.5E-48 307.7 29.5 243 25-298 1-245 (248)
5 TIGR01452 PGP_euk phosphoglyco 100.0 8.2E-44 1.8E-48 313.9 29.3 273 24-298 1-279 (279)
6 TIGR01457 HAD-SF-IIA-hyp2 HAD- 100.0 1.1E-43 2.5E-48 307.6 29.3 247 25-298 1-249 (249)
7 TIGR01458 HAD-SF-IIA-hyp3 HAD- 100.0 5.2E-40 1.1E-44 285.9 29.4 248 25-303 1-255 (257)
8 KOG3040 Predicted sugar phosph 100.0 2.4E-38 5.2E-43 253.4 20.7 250 23-303 5-257 (262)
9 TIGR01456 CECR5 HAD-superfamil 100.0 1.8E-37 3.9E-42 278.2 24.4 269 27-302 2-320 (321)
10 TIGR01460 HAD-SF-IIA Haloacid 100.0 2.7E-36 5.8E-41 259.6 25.2 230 28-272 1-236 (236)
11 TIGR01459 HAD-SF-IIA-hyp4 HAD- 100.0 3.4E-32 7.4E-37 235.3 24.5 230 19-271 2-242 (242)
12 KOG1618 Predicted phosphatase 99.9 7.8E-23 1.7E-27 174.2 17.5 245 27-275 37-345 (389)
13 PF13344 Hydrolase_6: Haloacid 99.9 8.5E-22 1.8E-26 146.6 10.0 99 28-128 1-101 (101)
14 COG0546 Gph Predicted phosphat 99.8 7.5E-19 1.6E-23 149.7 12.1 130 165-303 89-218 (220)
15 PRK06769 hypothetical protein; 99.8 2.8E-18 6E-23 140.7 14.8 79 221-304 89-173 (173)
16 PRK10748 flavin mononucleotide 99.8 3.3E-18 7.1E-23 147.6 14.4 125 166-302 114-238 (238)
17 TIGR00213 GmhB_yaeD D,D-heptos 99.8 1.5E-17 3.2E-22 136.9 15.8 73 221-299 102-175 (176)
18 TIGR01422 phosphonatase phosph 99.8 1.9E-18 4.1E-23 150.5 9.6 127 166-302 100-252 (253)
19 PF13242 Hydrolase_like: HAD-h 99.8 1.9E-18 4.2E-23 121.7 7.5 74 223-298 2-75 (75)
20 PLN02770 haloacid dehalogenase 99.7 1.4E-18 3.1E-23 150.7 6.7 122 166-298 109-231 (248)
21 TIGR03351 PhnX-like phosphonat 99.7 4.6E-18 9.9E-23 144.9 9.1 127 166-302 88-219 (220)
22 PRK08942 D,D-heptose 1,7-bisph 99.7 1.1E-16 2.4E-21 132.3 16.8 77 221-303 99-177 (181)
23 TIGR02253 CTE7 HAD superfamily 99.7 1.5E-17 3.3E-22 141.7 11.2 125 166-298 95-220 (221)
24 PLN03243 haloacid dehalogenase 99.7 1.2E-17 2.7E-22 145.4 10.0 123 166-301 110-233 (260)
25 PRK13478 phosphonoacetaldehyde 99.7 1.5E-17 3.3E-22 145.9 9.2 128 166-303 102-255 (267)
26 TIGR01454 AHBA_synth_RP 3-amin 99.7 1.6E-17 3.5E-22 140.1 7.0 129 166-304 76-205 (205)
27 PRK13223 phosphoglycolate phos 99.7 3.3E-17 7.2E-22 143.9 9.0 127 166-302 102-229 (272)
28 PLN02779 haloacid dehalogenase 99.7 9E-17 2E-21 142.1 11.3 121 166-299 145-269 (286)
29 COG1011 Predicted hydrolase (H 99.7 3.6E-16 7.7E-21 133.9 11.5 128 166-303 100-227 (229)
30 PLN02575 haloacid dehalogenase 99.7 2.2E-16 4.8E-21 142.7 10.2 121 166-299 217-338 (381)
31 PRK13288 pyrophosphatase PpaX; 99.7 5.1E-17 1.1E-21 137.9 5.7 128 166-303 83-211 (214)
32 PLN02940 riboflavin kinase 99.7 8.1E-17 1.7E-21 147.7 7.0 123 166-299 94-217 (382)
33 PRK13226 phosphoglycolate phos 99.7 8.5E-17 1.8E-21 138.0 6.5 127 166-302 96-224 (229)
34 TIGR01449 PGP_bact 2-phosphogl 99.7 1.2E-16 2.7E-21 135.3 6.7 127 166-302 86-213 (213)
35 PRK11587 putative phosphatase; 99.6 1.2E-16 2.6E-21 136.0 5.6 120 166-299 84-204 (218)
36 TIGR01662 HAD-SF-IIIA HAD-supe 99.6 4E-15 8.6E-20 116.5 12.8 47 223-270 83-131 (132)
37 TIGR01656 Histidinol-ppas hist 99.6 4.7E-15 1E-19 118.4 13.2 50 222-272 98-147 (147)
38 PRK10563 6-phosphogluconate ph 99.6 1E-16 2.2E-21 136.7 2.9 123 167-303 90-213 (221)
39 TIGR01261 hisB_Nterm histidino 99.6 1.1E-14 2.3E-19 117.7 12.7 54 221-275 99-152 (161)
40 PRK10530 pyridoxal phosphate ( 99.6 1.5E-14 3.2E-19 127.2 14.8 68 220-297 193-260 (272)
41 PRK13225 phosphoglycolate phos 99.6 1.4E-15 3.1E-20 133.3 7.9 125 166-303 143-268 (273)
42 PRK09449 dUMP phosphatase; Pro 99.6 1.9E-15 4.1E-20 129.1 8.5 127 166-303 96-223 (224)
43 TIGR02254 YjjG/YfnB HAD superf 99.6 2E-15 4.4E-20 128.7 7.8 126 166-302 98-224 (224)
44 COG0637 Predicted phosphatase/ 99.6 2.3E-15 5E-20 128.2 7.8 129 166-302 87-216 (221)
45 TIGR02252 DREG-2 REG-2-like, H 99.6 2.5E-15 5.5E-20 126.4 7.8 97 166-268 106-203 (203)
46 COG2179 Predicted hydrolase of 99.6 1.3E-14 2.7E-19 113.8 10.7 48 223-270 91-138 (175)
47 PRK10725 fructose-1-P/6-phosph 99.6 1.3E-15 2.9E-20 126.4 5.0 97 167-270 90-186 (188)
48 COG0241 HisB Histidinol phosph 99.6 6E-14 1.3E-18 113.7 14.0 75 221-301 101-175 (181)
49 PRK06698 bifunctional 5'-methy 99.6 1.8E-14 3.9E-19 135.8 11.5 123 166-303 331-454 (459)
50 PRK10826 2-deoxyglucose-6-phos 99.6 2.4E-15 5.2E-20 128.4 5.1 124 166-300 93-217 (222)
51 KOG3085 Predicted hydrolase (H 99.6 3.2E-14 6.9E-19 120.0 11.3 102 168-275 116-218 (237)
52 PLN02811 hydrolase 99.6 4.3E-15 9.2E-20 126.7 6.1 123 166-299 79-207 (220)
53 PRK13222 phosphoglycolate phos 99.6 5.1E-15 1.1E-19 126.5 6.1 128 166-303 94-222 (226)
54 TIGR02247 HAD-1A3-hyp Epoxide 99.6 2.4E-14 5.2E-19 121.2 10.1 105 166-274 95-200 (211)
55 PRK01158 phosphoglycolate phos 99.5 1.3E-13 2.8E-18 118.2 13.9 210 24-296 2-217 (230)
56 PRK14988 GMP/IMP nucleotidase; 99.5 9.2E-15 2E-19 124.9 4.4 105 166-276 94-200 (224)
57 TIGR02009 PGMB-YQAB-SF beta-ph 99.5 2.6E-14 5.5E-19 118.3 6.4 96 166-269 89-185 (185)
58 TIGR01664 DNA-3'-Pase DNA 3'-p 99.5 3.8E-13 8.3E-18 109.3 13.0 46 223-268 106-160 (166)
59 PRK10513 sugar phosphate phosp 99.5 1.6E-13 3.6E-18 120.5 11.6 66 221-296 191-256 (270)
60 PRK03669 mannosyl-3-phosphogly 99.5 1.2E-12 2.6E-17 115.1 16.9 58 22-82 4-64 (271)
61 COG0561 Cof Predicted hydrolas 99.5 2.4E-13 5.2E-18 119.1 11.1 68 219-296 182-249 (264)
62 PRK10976 putative hydrolase; P 99.5 3.5E-13 7.6E-18 118.2 11.7 68 220-297 184-253 (266)
63 TIGR01668 YqeG_hyp_ppase HAD s 99.5 4.3E-13 9.3E-18 109.6 11.3 103 163-279 41-145 (170)
64 TIGR01482 SPP-subfamily Sucros 99.5 4.1E-13 8.8E-18 114.7 11.6 69 219-297 142-210 (225)
65 TIGR01487 SPP-like sucrose-pho 99.5 1.4E-12 3E-17 110.8 13.6 62 224-295 145-206 (215)
66 TIGR01428 HAD_type_II 2-haloal 99.4 6.5E-14 1.4E-18 117.3 4.8 102 166-273 93-195 (198)
67 PLN02887 hydrolase family prot 99.4 6.8E-13 1.5E-17 126.7 12.4 63 17-82 300-365 (580)
68 PRK09456 ?-D-glucose-1-phospha 99.4 1.7E-13 3.8E-18 114.9 6.3 107 166-277 85-192 (199)
69 TIGR01685 MDP-1 magnesium-depe 99.4 8.9E-13 1.9E-17 107.3 10.2 52 223-275 109-162 (174)
70 PRK15126 thiamin pyrimidine py 99.4 6.7E-12 1.5E-16 110.4 15.9 55 25-82 2-59 (272)
71 PLN02919 haloacid dehalogenase 99.4 1.1E-12 2.4E-17 134.1 12.0 73 220-298 213-285 (1057)
72 cd01427 HAD_like Haloacid deha 99.4 3.1E-12 6.8E-17 99.6 11.8 50 219-269 90-139 (139)
73 PRK05446 imidazole glycerol-ph 99.4 3.8E-12 8.2E-17 114.7 13.8 52 221-273 100-151 (354)
74 PF13419 HAD_2: Haloacid dehal 99.4 2.7E-12 5.9E-17 104.5 10.7 46 223-269 131-176 (176)
75 TIGR01990 bPGM beta-phosphoglu 99.4 3.7E-13 8E-18 111.3 4.5 97 166-270 88-185 (185)
76 TIGR01486 HAD-SF-IIB-MPGP mann 99.4 2.7E-11 5.9E-16 105.6 15.7 53 27-82 1-56 (256)
77 PRK00192 mannosyl-3-phosphogly 99.4 1.7E-11 3.8E-16 107.9 14.4 56 24-82 3-61 (273)
78 PRK09484 3-deoxy-D-manno-octul 99.3 7.9E-12 1.7E-16 103.4 10.0 67 226-302 96-168 (183)
79 TIGR02726 phenyl_P_delta pheny 99.3 5.7E-12 1.2E-16 102.3 8.5 60 225-294 81-140 (169)
80 TIGR01670 YrbI-phosphatas 3-de 99.3 6.5E-12 1.4E-16 100.9 8.7 62 225-296 75-136 (154)
81 PHA02530 pseT polynucleotide k 99.3 5.2E-11 1.1E-15 106.2 15.0 103 165-273 187-299 (300)
82 TIGR00099 Cof-subfamily Cof su 99.3 1.1E-10 2.5E-15 101.7 16.3 65 222-296 184-248 (256)
83 TIGR01509 HAD-SF-IA-v3 haloaci 99.3 1.9E-12 4E-17 106.8 4.6 97 166-269 86-183 (183)
84 PHA02597 30.2 hypothetical pro 99.3 3.2E-12 6.9E-17 107.0 4.7 116 166-300 75-196 (197)
85 TIGR01993 Pyr-5-nucltdase pyri 99.3 2.5E-12 5.4E-17 106.5 3.7 96 166-269 85-184 (184)
86 TIGR01691 enolase-ppase 2,3-di 99.3 4.4E-12 9.4E-17 107.5 5.1 103 166-273 96-199 (220)
87 PF08282 Hydrolase_3: haloacid 99.2 3E-10 6.4E-15 98.0 14.2 62 226-297 186-247 (254)
88 PF09419 PGP_phosphatase: Mito 99.2 5.6E-11 1.2E-15 95.6 8.7 46 23-68 39-90 (168)
89 PLN02954 phosphoserine phospha 99.2 1.3E-09 2.7E-14 93.1 17.7 72 223-302 152-223 (224)
90 TIGR02463 MPGP_rel mannosyl-3- 99.2 7.6E-10 1.6E-14 94.3 14.3 53 27-82 1-56 (221)
91 TIGR01681 HAD-SF-IIIC HAD-supe 99.1 7E-10 1.5E-14 86.3 10.3 37 224-261 88-126 (128)
92 TIGR02471 sucr_syn_bact_C sucr 99.1 3.4E-09 7.3E-14 91.3 15.7 65 220-294 153-221 (236)
93 TIGR02461 osmo_MPG_phos mannos 99.1 3E-09 6.6E-14 90.8 14.2 53 27-82 1-55 (225)
94 KOG2914 Predicted haloacid-hal 99.1 5.5E-10 1.2E-14 94.0 9.0 121 167-298 94-218 (222)
95 PRK10187 trehalose-6-phosphate 99.1 1.2E-08 2.6E-13 89.3 17.3 64 226-303 174-241 (266)
96 TIGR01485 SPP_plant-cyano sucr 99.1 1.6E-08 3.4E-13 87.8 17.7 53 27-82 3-61 (249)
97 TIGR01549 HAD-SF-IA-v1 haloaci 99.0 2.3E-10 5.1E-15 91.7 4.3 88 167-263 66-154 (154)
98 PRK11133 serB phosphoserine ph 99.0 3.3E-08 7.1E-13 88.6 17.1 70 222-302 244-315 (322)
99 TIGR01663 PNK-3'Pase polynucle 99.0 6E-09 1.3E-13 98.6 12.5 42 222-264 260-305 (526)
100 TIGR01484 HAD-SF-IIB HAD-super 99.0 4.6E-09 1E-13 88.3 9.8 51 27-80 1-55 (204)
101 TIGR01672 AphA HAD superfamily 98.9 2.3E-09 5E-14 91.7 7.4 103 165-276 114-217 (237)
102 TIGR01548 HAD-SF-IA-hyp1 haloa 98.9 7.7E-10 1.7E-14 92.6 3.2 86 170-262 111-197 (197)
103 PTZ00445 p36-lilke protein; Pr 98.9 1.4E-08 3E-13 83.7 10.2 50 222-272 154-207 (219)
104 TIGR01493 HAD-SF-IA-v2 Haloaci 98.9 5E-10 1.1E-14 91.8 0.3 84 167-262 92-175 (175)
105 TIGR01686 FkbH FkbH-like domai 98.8 1.9E-08 4.1E-13 90.6 10.0 41 224-265 85-125 (320)
106 PF08645 PNK3P: Polynucleotide 98.8 2.1E-08 4.6E-13 80.8 7.7 46 222-267 94-153 (159)
107 smart00577 CPDc catalytic doma 98.8 1E-08 2.3E-13 81.7 5.6 42 221-269 97-138 (148)
108 TIGR00685 T6PP trehalose-phosp 98.8 3.3E-07 7.1E-12 79.4 15.2 65 228-303 169-240 (244)
109 PRK14502 bifunctional mannosyl 98.7 5E-07 1.1E-11 87.0 16.6 56 24-82 415-473 (694)
110 TIGR00338 serB phosphoserine p 98.7 4E-08 8.7E-13 83.5 8.4 121 166-302 86-219 (219)
111 PRK11009 aphA acid phosphatase 98.7 2.9E-08 6.3E-13 84.9 6.9 102 164-276 113-217 (237)
112 PRK09552 mtnX 2-hydroxy-3-keto 98.7 6.2E-08 1.4E-12 82.4 8.3 63 233-303 151-213 (219)
113 KOG3109 Haloacid dehalogenase- 98.6 3.6E-08 7.7E-13 81.0 5.0 85 184-273 117-208 (244)
114 PLN02382 probable sucrose-phos 98.6 1.8E-06 3.8E-11 80.3 16.5 48 227-277 176-226 (413)
115 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.6 6.1E-07 1.3E-11 75.0 11.3 43 226-269 147-189 (201)
116 PRK12702 mannosyl-3-phosphogly 98.6 3.3E-07 7.1E-12 79.9 9.4 55 25-82 1-58 (302)
117 PTZ00174 phosphomannomutase; P 98.5 1.2E-06 2.7E-11 75.9 11.5 53 24-79 4-59 (247)
118 PRK14501 putative bifunctional 98.5 3.7E-06 8.1E-11 83.9 15.2 64 227-303 658-721 (726)
119 TIGR03333 salvage_mtnX 2-hydro 98.4 1.5E-06 3.2E-11 73.7 8.6 62 234-303 148-209 (214)
120 PRK13582 thrH phosphoserine ph 98.4 9.2E-07 2E-11 74.2 7.2 123 166-303 69-196 (205)
121 TIGR01512 ATPase-IB2_Cd heavy 98.4 3.3E-06 7.1E-11 81.4 11.8 56 239-303 422-479 (536)
122 PLN02580 trehalose-phosphatase 98.3 5.2E-05 1.1E-09 69.2 18.0 68 227-303 302-374 (384)
123 TIGR02244 HAD-IG-Ncltidse HAD 98.3 5.1E-06 1.1E-10 74.7 10.3 41 231-271 283-324 (343)
124 PF00702 Hydrolase: haloacid d 98.2 4.2E-06 9.1E-11 70.4 7.9 85 163-263 125-215 (215)
125 TIGR01489 DKMTPPase-SF 2,3-dik 98.2 1.6E-05 3.4E-10 65.5 10.3 38 223-264 146-183 (188)
126 KOG2961 Predicted hydrolase (H 98.2 2.8E-05 6.1E-10 60.4 10.2 118 153-276 42-173 (190)
127 TIGR01490 HAD-SF-IB-hyp1 HAD-s 98.1 2.1E-05 4.6E-10 65.7 9.7 44 223-267 152-195 (202)
128 TIGR01684 viral_ppase viral ph 98.1 6.8E-06 1.5E-10 71.6 6.6 71 21-94 122-198 (301)
129 PLN02205 alpha,alpha-trehalose 98.0 0.00033 7.1E-09 70.8 17.9 53 24-79 595-654 (854)
130 TIGR01522 ATPase-IIA2_Ca golgi 98.0 7E-05 1.5E-09 76.4 13.3 67 228-303 603-671 (884)
131 TIGR01544 HAD-SF-IE haloacid d 98.0 6.2E-05 1.3E-09 65.7 10.5 33 229-262 196-230 (277)
132 PLN02423 phosphomannomutase 98.0 0.00013 2.8E-09 63.2 12.5 52 23-78 4-59 (245)
133 TIGR01511 ATPase-IB1_Cu copper 98.0 5.8E-05 1.3E-09 73.2 10.5 112 163-303 403-519 (562)
134 TIGR01525 ATPase-IB_hvy heavy 97.9 0.0001 2.2E-09 71.5 12.1 111 163-302 382-499 (556)
135 PLN03017 trehalose-phosphatase 97.9 0.00096 2.1E-08 60.5 17.2 64 9-76 94-166 (366)
136 TIGR01668 YqeG_hyp_ppase HAD s 97.9 0.00015 3.3E-09 59.1 9.9 104 23-129 23-132 (170)
137 PF05116 S6PP: Sucrose-6F-phos 97.8 4.6E-05 1E-09 66.0 7.1 47 227-277 166-212 (247)
138 COG1778 Low specificity phosph 97.8 0.0001 2.2E-09 57.8 7.8 60 20-82 3-75 (170)
139 PHA03398 viral phosphatase sup 97.8 4.4E-05 9.6E-10 66.7 6.5 71 22-95 125-201 (303)
140 TIGR01488 HAD-SF-IB Haloacid D 97.8 0.00025 5.4E-09 57.8 10.2 38 224-262 140-177 (177)
141 PRK10671 copA copper exporting 97.8 0.00019 4E-09 73.0 11.1 117 163-303 648-765 (834)
142 PLN02151 trehalose-phosphatase 97.8 0.0025 5.4E-08 57.7 16.8 63 11-77 83-154 (354)
143 TIGR01672 AphA HAD superfamily 97.7 0.00044 9.5E-09 59.4 11.4 120 7-130 43-208 (237)
144 KOG1615 Phosphoserine phosphat 97.7 8.7E-05 1.9E-09 60.2 6.5 41 224-272 159-199 (227)
145 TIGR01689 EcbF-BcbF capsule bi 97.7 9.1E-05 2E-09 57.0 5.9 44 25-68 1-53 (126)
146 TIGR01116 ATPase-IIA1_Ca sarco 97.7 0.00048 1E-08 70.6 12.1 59 234-302 622-682 (917)
147 smart00775 LNS2 LNS2 domain. T 97.7 0.00011 2.5E-09 59.0 6.1 49 27-78 1-66 (157)
148 COG0560 SerB Phosphoserine pho 97.6 0.00062 1.3E-08 57.5 10.5 39 227-266 145-183 (212)
149 TIGR02137 HSK-PSP phosphoserin 97.6 0.00042 9E-09 58.2 9.2 117 167-303 70-196 (203)
150 PRK11009 aphA acid phosphatase 97.6 0.00083 1.8E-08 57.6 11.1 119 7-129 43-207 (237)
151 TIGR01533 lipo_e_P4 5'-nucleot 97.6 0.00026 5.6E-09 61.7 7.6 51 40-90 119-170 (266)
152 PF12689 Acid_PPase: Acid Phos 97.5 0.00026 5.6E-09 57.4 6.5 48 227-275 109-156 (169)
153 COG4087 Soluble P-type ATPase 97.5 0.0015 3.2E-08 49.8 9.6 116 166-303 31-147 (152)
154 TIGR01675 plant-AP plant acid 97.5 0.00027 6E-09 60.0 6.3 58 23-83 75-164 (229)
155 COG4229 Predicted enolase-phos 97.3 0.0011 2.4E-08 53.3 7.8 104 166-274 104-209 (229)
156 TIGR01428 HAD_type_II 2-haloal 97.3 0.0023 4.9E-08 53.3 9.6 90 36-129 89-188 (198)
157 PHA02530 pseT polynucleotide k 97.2 0.0031 6.8E-08 56.1 10.4 56 25-80 158-228 (300)
158 TIGR01454 AHBA_synth_RP 3-amin 97.2 0.0035 7.5E-08 52.5 9.5 89 37-129 73-171 (205)
159 PLN02770 haloacid dehalogenase 97.1 0.004 8.8E-08 53.9 9.1 90 38-130 107-205 (248)
160 PRK10826 2-deoxyglucose-6-phos 97.0 0.0035 7.5E-08 53.2 8.4 90 37-130 90-189 (222)
161 PRK13288 pyrophosphatase PpaX; 97.0 0.0047 1E-07 52.1 9.0 88 38-129 81-178 (214)
162 TIGR01449 PGP_bact 2-phosphogl 96.9 0.0069 1.5E-07 50.9 9.4 89 38-130 84-182 (213)
163 PLN03243 haloacid dehalogenase 96.9 0.0051 1.1E-07 53.7 8.7 89 38-129 108-205 (260)
164 TIGR01106 ATPase-IIC_X-K sodiu 96.9 0.013 2.9E-07 60.7 13.1 43 37-82 566-608 (997)
165 TIGR02253 CTE7 HAD superfamily 96.9 0.0044 9.5E-08 52.4 8.0 88 39-130 94-192 (221)
166 PRK11033 zntA zinc/cadmium/mer 96.9 0.007 1.5E-07 60.7 10.2 110 164-303 567-681 (741)
167 TIGR01509 HAD-SF-IA-v3 haloaci 96.9 0.013 2.8E-07 47.8 10.1 87 38-129 84-180 (183)
168 PLN02575 haloacid dehalogenase 96.7 0.0095 2.1E-07 54.6 9.2 89 39-130 216-313 (381)
169 COG2217 ZntA Cation transport 96.7 0.007 1.5E-07 59.9 8.8 51 243-303 600-652 (713)
170 PRK14988 GMP/IMP nucleotidase; 96.7 0.0072 1.6E-07 51.5 7.9 88 38-128 92-188 (224)
171 TIGR02009 PGMB-YQAB-SF beta-ph 96.7 0.011 2.4E-07 48.3 8.5 87 38-129 87-182 (185)
172 TIGR03351 PhnX-like phosphonat 96.6 0.012 2.5E-07 49.8 8.5 89 38-129 86-186 (220)
173 TIGR02252 DREG-2 REG-2-like, H 96.6 0.01 2.2E-07 49.6 7.8 85 39-128 105-200 (203)
174 TIGR01422 phosphonatase phosph 96.6 0.014 3E-07 50.6 8.9 89 37-129 97-197 (253)
175 COG0546 Gph Predicted phosphat 96.6 0.025 5.5E-07 48.0 10.1 88 38-129 88-185 (220)
176 PRK08238 hypothetical protein; 96.5 0.0025 5.4E-08 60.4 4.0 94 167-273 74-168 (479)
177 PRK11587 putative phosphatase; 96.5 0.031 6.7E-07 47.3 10.1 89 37-129 81-178 (218)
178 PRK13222 phosphoglycolate phos 96.5 0.034 7.4E-07 47.0 10.3 89 37-129 91-189 (226)
179 PRK13225 phosphoglycolate phos 96.4 0.024 5.2E-07 49.9 9.3 90 36-129 139-235 (273)
180 TIGR01680 Veg_Stor_Prot vegeta 96.4 0.0086 1.9E-07 52.0 6.2 61 23-83 99-189 (275)
181 PRK10517 magnesium-transportin 96.4 0.058 1.3E-06 55.4 13.2 43 37-82 548-590 (902)
182 PRK13226 phosphoglycolate phos 96.4 0.019 4.1E-07 49.0 8.3 89 38-130 94-192 (229)
183 TIGR01990 bPGM beta-phosphoglu 96.4 0.024 5.3E-07 46.3 8.7 87 38-129 86-181 (185)
184 TIGR01523 ATPase-IID_K-Na pota 96.3 0.037 8E-07 57.7 11.4 44 36-82 643-686 (1053)
185 PLN02940 riboflavin kinase 96.3 0.028 6.1E-07 51.9 9.6 91 37-130 91-191 (382)
186 TIGR01517 ATPase-IIB_Ca plasma 96.3 0.053 1.1E-06 56.1 12.3 50 243-302 669-721 (941)
187 PRK15122 magnesium-transportin 96.3 0.065 1.4E-06 55.1 12.7 50 243-302 638-689 (903)
188 PF03767 Acid_phosphat_B: HAD 96.2 0.0031 6.7E-08 53.9 2.5 60 23-82 70-158 (229)
189 PRK09449 dUMP phosphatase; Pro 96.2 0.028 6E-07 47.6 8.3 89 38-130 94-193 (224)
190 TIGR02251 HIF-SF_euk Dullard-l 96.2 0.00017 3.8E-09 58.2 -5.1 92 167-267 44-136 (162)
191 TIGR01459 HAD-SF-IIA-hyp4 HAD- 96.1 0.0036 7.9E-08 54.0 2.5 91 164-263 23-115 (242)
192 TIGR02254 YjjG/YfnB HAD superf 96.1 0.037 8E-07 46.7 8.5 87 38-129 96-194 (224)
193 TIGR02247 HAD-1A3-hyp Epoxide 96.0 0.025 5.5E-07 47.4 7.3 91 38-129 93-192 (211)
194 TIGR01524 ATPase-IIIB_Mg magne 96.0 0.11 2.4E-06 53.3 13.1 44 36-82 512-555 (867)
195 PRK13478 phosphonoacetaldehyde 96.0 0.062 1.3E-06 47.0 9.8 89 38-129 100-199 (267)
196 COG2503 Predicted secreted aci 96.0 0.019 4E-07 48.6 6.1 41 40-83 123-167 (274)
197 PRK13223 phosphoglycolate phos 95.9 0.037 7.9E-07 48.7 8.1 89 38-129 100-197 (272)
198 TIGR01691 enolase-ppase 2,3-di 95.8 0.045 9.6E-07 46.5 7.7 89 39-130 95-193 (220)
199 COG0637 Predicted phosphatase/ 95.8 0.061 1.3E-06 45.7 8.6 92 36-130 83-183 (221)
200 COG3769 Predicted hydrolase (H 95.7 0.026 5.6E-07 47.1 5.7 57 23-82 5-63 (274)
201 PRK09456 ?-D-glucose-1-phospha 95.7 0.05 1.1E-06 45.3 7.6 88 39-129 84-181 (199)
202 TIGR01657 P-ATPase-V P-type AT 95.7 0.28 6E-06 51.5 14.5 43 37-82 654-696 (1054)
203 TIGR01647 ATPase-IIIA_H plasma 95.7 0.11 2.3E-06 52.5 11.1 47 33-82 436-482 (755)
204 TIGR01548 HAD-SF-IA-hyp1 haloa 95.6 0.11 2.4E-06 43.1 9.4 50 39-91 106-155 (197)
205 PF08235 LNS2: LNS2 (Lipin/Ned 95.4 0.37 8E-06 38.5 11.0 42 27-71 1-56 (157)
206 TIGR00338 serB phosphoserine p 95.2 0.17 3.7E-06 42.6 9.5 42 38-82 84-125 (219)
207 TIGR01549 HAD-SF-IA-v1 haloaci 95.2 0.19 4.1E-06 39.7 9.1 37 39-78 64-100 (154)
208 PLN02811 hydrolase 95.0 0.19 4.1E-06 42.5 8.9 91 37-130 76-181 (220)
209 PLN03063 alpha,alpha-trehalose 94.9 0.9 2E-05 46.2 14.9 55 25-82 507-573 (797)
210 TIGR01652 ATPase-Plipid phosph 94.9 0.33 7.2E-06 51.0 12.2 43 36-81 628-670 (1057)
211 PRK06698 bifunctional 5'-methy 94.7 0.23 5.1E-06 47.1 9.7 87 38-130 329-424 (459)
212 TIGR01993 Pyr-5-nucltdase pyri 94.7 0.17 3.7E-06 41.4 7.7 85 39-129 84-181 (184)
213 TIGR01497 kdpB K+-transporting 94.6 0.41 9E-06 47.4 11.4 111 164-302 445-560 (675)
214 PF00702 Hydrolase: haloacid d 94.6 0.12 2.6E-06 43.0 6.8 89 33-125 121-214 (215)
215 COG0474 MgtA Cation transport 94.6 0.28 6E-06 50.6 10.4 43 37-82 545-587 (917)
216 PRK14010 potassium-transportin 94.5 0.55 1.2E-05 46.6 11.8 114 164-302 440-555 (673)
217 PRK10725 fructose-1-P/6-phosph 94.4 0.23 4.9E-06 40.7 7.9 89 37-130 86-183 (188)
218 PLN02779 haloacid dehalogenase 94.4 0.3 6.4E-06 43.3 9.0 88 39-130 144-243 (286)
219 PLN03190 aminophospholipid tra 94.3 2.8 6.1E-05 44.5 17.3 51 243-302 872-922 (1178)
220 TIGR02468 sucrsPsyn_pln sucros 94.2 1.7 3.7E-05 45.1 14.9 43 228-272 958-1002(1050)
221 KOG2630 Enolase-phosphatase E- 94.2 0.33 7.1E-06 40.9 8.1 125 166-299 124-249 (254)
222 COG1011 Predicted hydrolase (H 93.8 0.37 8E-06 40.7 8.3 87 38-129 98-195 (229)
223 PRK10563 6-phosphogluconate ph 93.8 0.38 8.3E-06 40.5 8.3 85 38-129 87-182 (221)
224 COG4030 Uncharacterized protei 93.6 3.5 7.6E-05 34.9 13.1 42 227-270 192-234 (315)
225 PLN02954 phosphoserine phospha 93.2 0.18 4E-06 42.6 5.3 41 39-82 84-124 (224)
226 COG5610 Predicted hydrolase (H 93.0 0.42 9.1E-06 44.3 7.5 45 225-269 157-201 (635)
227 TIGR01525 ATPase-IB_hvy heavy 93.0 0.52 1.1E-05 45.9 8.7 91 33-129 378-470 (556)
228 TIGR01511 ATPase-IB1_Cu copper 92.9 0.84 1.8E-05 44.5 10.1 88 34-129 400-489 (562)
229 PRK01122 potassium-transportin 92.9 1.2 2.6E-05 44.2 11.1 113 164-302 444-559 (679)
230 COG1877 OtsB Trehalose-6-phosp 92.8 2.8 6E-05 36.7 12.1 56 23-81 16-80 (266)
231 PF11019 DUF2608: Protein of u 92.7 1.2 2.6E-05 38.6 9.7 49 225-274 161-213 (252)
232 KOG0207 Cation transport ATPas 92.3 4.4 9.6E-05 41.0 13.9 108 166-302 724-837 (951)
233 KOG0202 Ca2+ transporting ATPa 92.0 1.3 2.8E-05 44.4 9.7 43 38-83 583-625 (972)
234 PRK10748 flavin mononucleotide 91.8 0.95 2.1E-05 38.8 8.1 83 38-130 112-205 (238)
235 PRK11133 serB phosphoserine ph 91.7 1.3 2.7E-05 40.0 9.0 91 37-130 179-288 (322)
236 TIGR01533 lipo_e_P4 5'-nucleot 91.5 0.064 1.4E-06 46.9 0.4 86 166-260 119-205 (266)
237 PF06888 Put_Phosphatase: Puta 91.3 3.5 7.6E-05 35.3 10.8 74 228-302 152-230 (234)
238 PF12710 HAD: haloacid dehalog 90.5 0.6 1.3E-05 38.1 5.4 32 227-260 158-192 (192)
239 PF05152 DUF705: Protein of un 90.5 0.73 1.6E-05 40.2 5.9 71 21-94 118-194 (297)
240 COG4087 Soluble P-type ATPase 90.4 3.7 8.1E-05 31.6 8.8 88 33-127 24-114 (152)
241 TIGR02137 HSK-PSP phosphoserin 89.9 0.72 1.6E-05 38.6 5.4 43 36-82 65-107 (203)
242 PRK11590 hypothetical protein; 89.8 0.74 1.6E-05 38.7 5.4 40 39-81 95-135 (211)
243 PRK13582 thrH phosphoserine ph 89.7 0.82 1.8E-05 37.9 5.6 43 36-82 65-107 (205)
244 PF05761 5_nucleotid: 5' nucle 89.2 0.53 1.2E-05 44.3 4.5 42 230-271 283-325 (448)
245 KOG0203 Na+/K+ ATPase, alpha s 89.2 2.2 4.7E-05 42.8 8.5 46 234-291 700-745 (1019)
246 TIGR02250 FCP1_euk FCP1-like p 89.0 1.2 2.6E-05 35.6 5.8 39 40-82 59-97 (156)
247 PLN02645 phosphoglycolate phos 88.1 0.51 1.1E-05 42.3 3.4 89 166-268 45-136 (311)
248 PF06941 NT5C: 5' nucleotidase 88.0 0.79 1.7E-05 37.8 4.3 32 34-65 68-99 (191)
249 TIGR01545 YfhB_g-proteo haloac 87.9 1.2 2.6E-05 37.5 5.4 25 39-63 94-119 (210)
250 PHA02597 30.2 hypothetical pro 87.6 5.6 0.00012 32.7 9.3 31 38-69 73-103 (197)
251 TIGR00715 precor6x_red precorr 86.0 22 0.00048 30.9 12.6 76 44-130 12-96 (256)
252 PRK08238 hypothetical protein; 85.9 1.7 3.7E-05 41.5 5.7 39 40-81 73-111 (479)
253 KOG2470 Similar to IMP-GMP spe 85.8 3.3 7.2E-05 37.3 7.0 38 234-271 338-376 (510)
254 COG3700 AphA Acid phosphatase 85.1 1.6 3.5E-05 35.4 4.4 29 243-272 185-213 (237)
255 PF06189 5-nucleotidase: 5'-nu 84.7 26 0.00056 30.5 14.0 70 55-129 36-105 (264)
256 PRK11033 zntA zinc/cadmium/mer 84.3 2.6 5.7E-05 42.6 6.5 90 33-130 562-652 (741)
257 PF12710 HAD: haloacid dehalog 84.0 1.8 3.8E-05 35.3 4.5 38 42-82 92-129 (192)
258 KOG0206 P-type ATPase [General 83.1 5.5 0.00012 41.8 8.3 27 37-63 649-675 (1151)
259 PF01740 STAS: STAS domain; I 83.1 3.1 6.6E-05 31.1 5.1 62 25-91 48-113 (117)
260 TIGR02251 HIF-SF_euk Dullard-l 83.1 3.6 7.9E-05 33.0 5.8 39 40-82 43-81 (162)
261 PRK10671 copA copper exporting 83.0 6.2 0.00013 40.5 8.7 90 34-129 645-735 (834)
262 KOG2914 Predicted haloacid-hal 82.9 2.4 5.2E-05 36.0 4.8 43 35-77 88-130 (222)
263 PRK11590 hypothetical protein; 82.5 0.41 8.8E-06 40.3 0.0 32 232-264 166-197 (211)
264 KOG2961 Predicted hydrolase (H 81.7 4.7 0.0001 31.9 5.6 60 24-83 42-112 (190)
265 PF03031 NIF: NLI interacting 79.2 1.1 2.4E-05 35.7 1.5 39 26-65 1-61 (159)
266 TIGR01658 EYA-cons_domain eyes 77.0 6.8 0.00015 33.6 5.6 49 221-272 211-259 (274)
267 TIGR01497 kdpB K+-transporting 76.7 5.4 0.00012 39.8 5.7 90 33-130 440-532 (675)
268 KOG3085 Predicted hydrolase (H 76.4 2.9 6.3E-05 35.8 3.3 51 39-93 113-163 (237)
269 PF06437 ISN1: IMP-specific 5' 76.3 10 0.00022 34.8 6.7 55 24-78 146-205 (408)
270 PRK01122 potassium-transportin 76.2 7.4 0.00016 38.8 6.5 89 33-129 439-530 (679)
271 TIGR02990 ectoine_eutA ectoine 75.5 34 0.00074 29.4 9.7 36 40-82 84-121 (239)
272 PRK14010 potassium-transportin 75.2 6.3 0.00014 39.3 5.8 89 33-129 435-526 (673)
273 cd05014 SIS_Kpsf KpsF-like pro 74.9 5.3 0.00011 30.2 4.2 38 37-74 56-93 (128)
274 KOG0210 P-type ATPase [Inorgan 73.8 23 0.00051 35.2 8.8 114 168-302 714-832 (1051)
275 COG4996 Predicted phosphatase 73.8 9.5 0.00021 29.4 5.1 40 41-83 43-82 (164)
276 cd00544 CobU Adenosylcobinamid 73.2 3.8 8.2E-05 33.2 3.1 49 17-65 63-126 (169)
277 TIGR02109 PQQ_syn_pqqE coenzym 71.4 11 0.00023 34.4 6.0 69 13-82 37-107 (358)
278 TIGR01545 YfhB_g-proteo haloac 70.9 1.5 3.3E-05 36.9 0.3 33 232-265 165-197 (210)
279 PF02358 Trehalose_PPase: Treh 69.4 5.1 0.00011 34.2 3.3 46 226-272 165-218 (235)
280 cd05008 SIS_GlmS_GlmD_1 SIS (S 69.0 9.3 0.0002 28.7 4.4 32 39-70 57-88 (126)
281 TIGR02886 spore_II_AA anti-sig 68.0 17 0.00036 26.5 5.4 54 24-82 38-93 (106)
282 PF05763 DUF835: Protein of un 67.8 15 0.00032 28.6 5.2 68 3-73 51-129 (136)
283 PF00072 Response_reg: Respons 66.6 27 0.00059 25.0 6.4 63 14-82 31-95 (112)
284 cd07041 STAS_RsbR_RsbS_like Su 65.8 20 0.00044 26.2 5.5 55 24-83 40-96 (109)
285 cd05006 SIS_GmhA Phosphoheptos 65.2 10 0.00023 30.7 4.2 35 34-68 107-141 (177)
286 cd05710 SIS_1 A subgroup of th 65.0 15 0.00031 27.7 4.7 33 38-70 57-89 (120)
287 PF04312 DUF460: Protein of un 64.9 32 0.0007 26.7 6.4 53 29-82 47-102 (138)
288 cd05013 SIS_RpiR RpiR-like pro 64.5 12 0.00025 28.4 4.2 31 41-71 73-103 (139)
289 TIGR03127 RuMP_HxlB 6-phospho 64.4 13 0.00028 30.1 4.6 38 36-73 80-117 (179)
290 PLN03064 alpha,alpha-trehalose 64.4 16 0.00034 37.9 6.0 55 25-82 591-663 (934)
291 COG4229 Predicted enolase-phos 63.6 35 0.00075 28.1 6.6 29 39-67 103-131 (229)
292 PRK04296 thymidine kinase; Pro 63.6 42 0.0009 27.5 7.5 93 155-251 80-174 (190)
293 COG4359 Uncharacterized conser 63.5 6.1 0.00013 32.4 2.4 69 221-302 142-211 (220)
294 PF01380 SIS: SIS domain SIS d 63.4 17 0.00037 27.3 4.9 33 36-68 61-93 (131)
295 COG0647 NagD Predicted sugar p 63.3 58 0.0013 28.6 8.6 89 163-266 22-113 (269)
296 PRK05301 pyrroloquinoline quin 63.1 19 0.0004 33.2 5.9 68 12-82 45-116 (378)
297 cd01522 RHOD_1 Member of the R 62.6 21 0.00045 26.7 5.1 68 14-82 2-90 (117)
298 TIGR00377 ant_ant_sig anti-ant 62.6 26 0.00055 25.4 5.6 53 24-82 42-97 (108)
299 TIGR01493 HAD-SF-IA-v2 Haloaci 62.4 4.5 9.8E-05 32.4 1.5 47 35-91 86-132 (175)
300 KOG0207 Cation transport ATPas 60.8 45 0.00098 34.2 8.2 46 34-82 718-763 (951)
301 TIGR02245 HAD_IIID1 HAD-superf 60.7 31 0.00068 28.6 6.2 56 23-82 19-84 (195)
302 TIGR03278 methan_mark_10 putat 60.4 20 0.00044 33.4 5.6 50 33-82 78-130 (404)
303 TIGR00441 gmhA phosphoheptose 60.3 14 0.00031 29.2 4.1 34 35-68 86-119 (154)
304 COG3882 FkbH Predicted enzyme 58.5 39 0.00084 32.2 6.9 49 24-72 221-288 (574)
305 PRK13937 phosphoheptose isomer 57.0 18 0.0004 29.6 4.3 33 36-68 114-146 (188)
306 cd01766 Ufm1 Urm1-like ubiquit 56.6 16 0.00034 24.9 3.0 39 224-263 25-63 (82)
307 KOG0208 Cation transport ATPas 56.1 87 0.0019 32.6 9.3 29 36-64 702-730 (1140)
308 cd05005 SIS_PHI Hexulose-6-pho 55.9 21 0.00045 28.9 4.4 36 38-73 85-120 (179)
309 KOG2134 Polynucleotide kinase 55.0 25 0.00054 32.3 4.9 90 12-101 62-181 (422)
310 COG0731 Fe-S oxidoreductases [ 54.8 29 0.00063 30.8 5.3 45 29-76 79-127 (296)
311 cd03033 ArsC_15kD Arsenate Red 54.7 36 0.00078 25.5 5.2 50 32-82 2-52 (113)
312 TIGR01494 ATPase_P-type ATPase 54.4 32 0.00069 33.0 6.1 46 33-81 341-386 (499)
313 cd06844 STAS Sulphate Transpor 54.0 35 0.00075 24.5 4.9 54 24-82 38-93 (100)
314 TIGR01494 ATPase_P-type ATPase 53.8 89 0.0019 29.9 9.0 87 164-272 346-432 (499)
315 cd01523 RHOD_Lact_B Member of 53.6 24 0.00052 25.2 4.0 66 15-82 3-87 (100)
316 cd05017 SIS_PGI_PMI_1 The memb 53.5 26 0.00057 26.2 4.3 27 39-65 54-80 (119)
317 COG2216 KdpB High-affinity K+ 53.3 58 0.0012 31.4 7.1 74 6-82 409-487 (681)
318 PRK00414 gmhA phosphoheptose i 52.9 32 0.00069 28.4 5.1 35 35-69 118-152 (192)
319 KOG3107 Predicted haloacid deh 52.7 1.1E+02 0.0023 28.3 8.5 47 221-271 406-452 (468)
320 PF11848 DUF3368: Domain of un 52.2 33 0.00072 21.2 3.9 32 39-79 16-47 (48)
321 PF06437 ISN1: IMP-specific 5' 51.4 22 0.00048 32.6 4.1 42 228-271 351-400 (408)
322 cd07043 STAS_anti-anti-sigma_f 50.0 52 0.0011 23.0 5.3 53 25-82 38-92 (99)
323 COG0602 NrdG Organic radical a 49.2 20 0.00043 30.2 3.3 51 17-67 57-111 (212)
324 PRK13938 phosphoheptose isomer 48.9 39 0.00084 28.1 5.0 33 36-68 121-153 (196)
325 cd00860 ThrRS_anticodon ThrRS 48.8 48 0.001 22.9 4.9 48 33-82 6-53 (91)
326 TIGR01684 viral_ppase viral ph 48.1 3.3 7.2E-05 36.6 -1.6 60 167-231 148-208 (301)
327 PF13344 Hydrolase_6: Haloacid 47.9 57 0.0012 23.7 5.2 84 165-264 14-100 (101)
328 TIGR01452 PGP_euk phosphoglyco 47.5 1.9E+02 0.0041 25.2 10.0 87 166-267 19-108 (279)
329 TIGR03365 Bsubt_queE 7-cyano-7 47.3 25 0.00054 30.1 3.7 54 13-66 56-111 (238)
330 TIGR00035 asp_race aspartate r 46.4 1.8E+02 0.0039 24.5 9.1 80 40-130 60-146 (229)
331 PRK05568 flavodoxin; Provision 45.9 67 0.0015 24.6 5.7 61 22-83 46-113 (142)
332 COG2087 CobU Adenosyl cobinami 45.6 18 0.00039 29.2 2.4 44 22-65 73-130 (175)
333 PF06014 DUF910: Bacterial pro 45.6 15 0.00032 24.4 1.5 25 231-260 7-31 (62)
334 COG0532 InfB Translation initi 45.5 65 0.0014 30.9 6.3 55 28-82 77-137 (509)
335 cd01526 RHOD_ThiF Member of th 45.4 62 0.0013 24.2 5.3 68 12-81 9-97 (122)
336 PLN02735 carbamoyl-phosphate s 45.3 4.2E+02 0.0091 28.5 13.4 64 228-302 703-766 (1102)
337 cd01447 Polysulfide_ST Polysul 45.2 30 0.00065 24.6 3.4 68 14-82 2-87 (103)
338 COG1366 SpoIIAA Anti-anti-sigm 45.0 51 0.0011 24.5 4.7 55 24-83 43-99 (117)
339 PRK00994 F420-dependent methyl 44.2 56 0.0012 28.0 5.1 54 26-82 57-111 (277)
340 TIGR03865 PQQ_CXXCW PQQ-depend 43.9 66 0.0014 25.7 5.5 20 13-32 38-57 (162)
341 cd01519 RHOD_HSP67B2 Member of 43.8 31 0.00067 24.8 3.3 18 15-32 3-21 (106)
342 KOG1145 Mitochondrial translat 43.8 66 0.0014 31.3 6.0 59 25-83 220-284 (683)
343 cd04795 SIS SIS domain. SIS (S 43.6 45 0.00098 22.8 4.0 21 42-62 61-81 (87)
344 smart00775 LNS2 LNS2 domain. T 43.4 97 0.0021 24.6 6.3 40 227-267 103-143 (157)
345 COG2216 KdpB High-affinity K+ 43.3 1E+02 0.0022 29.8 7.1 94 163-277 445-540 (681)
346 PRK13602 putative ribosomal pr 42.8 37 0.0008 23.8 3.4 29 36-64 8-36 (82)
347 KOG0384 Chromodomain-helicase 42.5 1.3E+02 0.0028 32.3 8.2 36 46-82 690-725 (1373)
348 TIGR02826 RNR_activ_nrdG3 anae 42.3 44 0.00095 26.3 4.1 49 13-63 46-96 (147)
349 PRK11557 putative DNA-binding 42.3 38 0.00082 29.5 4.2 35 38-72 185-219 (278)
350 PRK05800 cobU adenosylcobinami 42.2 20 0.00044 28.9 2.3 43 22-64 74-125 (170)
351 TIGR01279 DPOR_bchN light-inde 42.0 97 0.0021 28.9 7.0 63 240-303 272-340 (407)
352 PF05761 5_nucleotid: 5' nucle 42.0 31 0.00068 32.6 3.8 36 42-81 186-223 (448)
353 PF09269 DUF1967: Domain of un 41.6 27 0.00058 23.6 2.4 22 230-251 44-65 (69)
354 PRK10076 pyruvate formate lyas 41.5 58 0.0013 27.4 5.0 62 13-76 19-87 (213)
355 KOG4549 Magnesium-dependent ph 41.4 72 0.0016 24.6 4.8 41 40-82 45-85 (144)
356 cd01449 TST_Repeat_2 Thiosulfa 41.2 81 0.0018 23.1 5.4 17 16-32 4-20 (118)
357 COG3958 Transketolase, C-termi 40.9 1.8E+02 0.0038 25.9 7.8 73 33-105 196-273 (312)
358 cd03174 DRE_TIM_metallolyase D 40.8 2.3E+02 0.005 24.2 9.6 72 6-82 9-89 (265)
359 PRK10886 DnaA initiator-associ 40.8 54 0.0012 27.2 4.6 29 36-64 117-145 (196)
360 TIGR02495 NrdG2 anaerobic ribo 40.7 1E+02 0.0022 25.0 6.3 65 12-80 46-112 (191)
361 KOG2116 Protein involved in pl 40.6 64 0.0014 31.8 5.5 65 24-91 529-613 (738)
362 PRK11660 putative transporter; 40.3 63 0.0014 31.6 5.7 74 20-99 486-563 (568)
363 PRK15482 transcriptional regul 40.3 45 0.00097 29.3 4.3 36 35-70 189-224 (285)
364 PRK06242 flavodoxin; Provision 39.9 98 0.0021 23.9 5.9 59 23-83 42-105 (150)
365 cd03110 Fer4_NifH_child This p 39.8 1.6E+02 0.0034 23.5 7.3 10 23-32 91-100 (179)
366 TIGR01501 MthylAspMutase methy 39.1 1.7E+02 0.0037 22.6 6.9 40 43-82 68-112 (134)
367 PRK06683 hypothetical protein; 38.7 49 0.0011 23.2 3.5 47 36-82 8-55 (82)
368 PF02283 CobU: Cobinamide kina 38.6 8.3 0.00018 31.2 -0.6 40 25-64 73-123 (167)
369 TIGR03595 Obg_CgtA_exten Obg f 38.5 41 0.00088 22.7 2.9 21 231-251 45-65 (69)
370 COG4850 Uncharacterized conser 38.4 63 0.0014 29.1 4.8 44 39-82 196-240 (373)
371 PF09822 ABC_transp_aux: ABC-t 38.2 63 0.0014 28.1 4.9 55 33-87 202-268 (271)
372 COG3700 AphA Acid phosphatase 38.0 1.1E+02 0.0023 25.2 5.6 82 44-129 119-207 (237)
373 COG4359 Uncharacterized conser 37.9 68 0.0015 26.5 4.5 44 34-80 68-111 (220)
374 PF07075 DUF1343: Protein of u 37.9 27 0.00058 32.1 2.6 112 17-128 71-193 (365)
375 KOG0204 Calcium transporting A 37.8 4.9E+02 0.011 27.1 11.4 49 244-301 740-790 (1034)
376 COG1393 ArsC Arsenate reductas 37.7 1.3E+02 0.0029 22.6 5.9 50 33-83 4-54 (117)
377 PTZ00106 60S ribosomal protein 37.7 46 0.001 24.7 3.4 48 36-83 22-70 (108)
378 PRK13936 phosphoheptose isomer 37.6 74 0.0016 26.3 5.0 25 41-65 124-148 (197)
379 PF02358 Trehalose_PPase: Treh 37.3 29 0.00063 29.5 2.6 44 29-75 1-53 (235)
380 PRK05625 5-amino-6-(5-phosphor 36.8 2.5E+02 0.0053 23.4 8.2 67 55-127 93-161 (217)
381 COG2241 CobL Precorrin-6B meth 36.5 80 0.0017 26.6 5.0 37 45-82 130-166 (210)
382 PRK11337 DNA-binding transcrip 36.5 54 0.0012 28.8 4.3 36 36-71 195-230 (292)
383 cd01444 GlpE_ST GlpE sulfurtra 36.0 1.2E+02 0.0026 21.0 5.4 66 15-82 4-82 (96)
384 PF13433 Peripla_BP_5: Peripla 36.0 3.5E+02 0.0076 24.9 11.5 81 33-117 45-144 (363)
385 COG5663 Uncharacterized conser 35.8 40 0.00088 27.3 2.9 31 246-276 137-167 (194)
386 PF04007 DUF354: Protein of un 35.6 56 0.0012 29.7 4.2 34 45-82 17-50 (335)
387 TIGR03820 lys_2_3_AblA lysine- 34.9 75 0.0016 29.8 5.0 19 40-58 230-248 (417)
388 PF07287 DUF1446: Protein of u 34.8 3.5E+02 0.0076 24.9 9.2 52 23-76 22-90 (362)
389 COG1985 RibD Pyrimidine reduct 34.7 2.1E+02 0.0046 24.2 7.3 64 56-127 98-163 (218)
390 PRK14086 dnaA chromosomal repl 34.7 55 0.0012 32.3 4.2 53 18-73 371-425 (617)
391 COG1609 PurR Transcriptional r 34.5 3.4E+02 0.0074 24.3 11.4 87 41-129 160-263 (333)
392 cd05007 SIS_Etherase N-acetylm 34.4 86 0.0019 27.2 5.1 37 34-70 124-160 (257)
393 COG2185 Sbm Methylmalonyl-CoA 34.3 83 0.0018 24.7 4.4 69 33-105 43-117 (143)
394 PF13580 SIS_2: SIS domain; PD 34.0 56 0.0012 25.2 3.5 18 45-62 120-137 (138)
395 KOG3120 Predicted haloacid deh 33.9 34 0.00075 29.0 2.3 36 239-275 179-215 (256)
396 KOG2470 Similar to IMP-GMP spe 33.9 39 0.00085 30.7 2.8 20 44-63 245-264 (510)
397 TIGR01370 cysRS possible cyste 33.8 1.9E+02 0.0041 26.1 7.2 43 23-65 159-214 (315)
398 cd06592 GH31_glucosidase_KIAA1 33.7 1.1E+02 0.0023 27.3 5.7 51 14-64 28-92 (303)
399 PRK13361 molybdenum cofactor b 33.7 74 0.0016 28.7 4.7 70 11-82 43-116 (329)
400 cd01448 TST_Repeat_1 Thiosulfa 33.6 88 0.0019 23.1 4.5 19 14-32 3-21 (122)
401 PRK13762 tRNA-modifying enzyme 33.6 78 0.0017 28.5 4.8 26 40-65 143-168 (322)
402 COG0378 HypB Ni2+-binding GTPa 33.6 1E+02 0.0022 25.7 5.0 52 222-275 23-76 (202)
403 cd07042 STAS_SulP_like_sulfate 33.6 74 0.0016 22.6 4.0 51 26-82 42-95 (107)
404 cd06589 GH31 The enzymes of gl 33.3 1.3E+02 0.0029 26.0 6.2 56 25-82 40-108 (265)
405 TIGR03470 HpnH hopanoid biosyn 33.3 1.1E+02 0.0024 27.4 5.7 43 40-82 147-193 (318)
406 COG1737 RpiR Transcriptional r 33.2 77 0.0017 27.8 4.7 37 38-74 187-223 (281)
407 PF02571 CbiJ: Precorrin-6x re 33.1 73 0.0016 27.6 4.4 63 228-304 183-249 (249)
408 PRK11382 frlB fructoselysine-6 32.9 64 0.0014 29.2 4.2 34 40-73 104-137 (340)
409 cd01528 RHOD_2 Member of the R 32.9 97 0.0021 22.0 4.5 66 15-82 4-84 (101)
410 PF03671 Ufm1: Ubiquitin fold 32.4 16 0.00035 24.8 0.2 39 224-263 25-63 (76)
411 COG1614 CdhC CO dehydrogenase/ 32.4 23 0.00051 31.8 1.2 77 1-83 315-397 (470)
412 cd01534 4RHOD_Repeat_3 Member 32.4 1.3E+02 0.0029 21.0 5.1 66 15-82 3-82 (95)
413 TIGR01664 DNA-3'-Pase DNA 3'-p 32.4 1.8E+02 0.0039 23.2 6.4 26 166-192 43-69 (166)
414 TIGR01508 rib_reduct_arch 2,5- 32.2 3E+02 0.0064 22.9 8.1 105 13-127 28-157 (210)
415 KOG0541 Alkyl hydroperoxide re 31.9 68 0.0015 25.6 3.5 64 15-81 34-102 (171)
416 PF09547 Spore_IV_A: Stage IV 31.7 55 0.0012 30.8 3.5 37 45-82 170-211 (492)
417 COG4502 5'(3')-deoxyribonucleo 31.5 1.5E+02 0.0032 23.4 5.2 72 18-91 43-121 (180)
418 PRK13601 putative L7Ae-like ri 31.5 69 0.0015 22.5 3.3 45 39-83 8-53 (82)
419 cd06167 LabA_like LabA_like pr 31.3 86 0.0019 24.2 4.2 36 45-82 89-125 (149)
420 TIGR00014 arsC arsenate reduct 31.2 1.3E+02 0.0029 22.3 5.1 40 43-82 11-51 (114)
421 cd06591 GH31_xylosidase_XylS X 31.0 1E+02 0.0022 27.6 5.2 57 25-81 40-105 (319)
422 TIGR02668 moaA_archaeal probab 30.9 94 0.002 27.4 4.9 70 11-82 38-110 (302)
423 TIGR01754 flav_RNR ribonucleot 30.9 1.3E+02 0.0028 23.1 5.2 43 24-67 50-94 (140)
424 cd02071 MM_CoA_mut_B12_BD meth 30.9 99 0.0022 23.2 4.4 15 42-56 65-79 (122)
425 TIGR03470 HpnH hopanoid biosyn 30.6 1.6E+02 0.0034 26.4 6.3 64 13-80 59-123 (318)
426 PRK06703 flavodoxin; Provision 30.4 1.5E+02 0.0033 22.9 5.6 61 22-83 46-116 (151)
427 PRK05441 murQ N-acetylmuramic 30.3 75 0.0016 28.3 4.1 37 33-69 136-172 (299)
428 PRK02947 hypothetical protein; 30.3 80 0.0017 27.2 4.2 32 34-65 112-143 (246)
429 PF06434 Aconitase_2_N: Aconit 30.2 75 0.0016 26.3 3.6 44 39-84 37-85 (204)
430 KOG3109 Haloacid dehalogenase- 30.1 3.3E+02 0.0071 23.3 7.4 31 58-91 117-147 (244)
431 TIGR02329 propionate_PrpR prop 29.9 4E+02 0.0087 25.9 9.2 91 166-272 82-172 (526)
432 cd06598 GH31_transferase_CtsZ 29.8 1.5E+02 0.0033 26.5 6.0 57 25-81 40-109 (317)
433 PRK11543 gutQ D-arabinose 5-ph 29.7 81 0.0018 28.1 4.3 38 36-73 97-134 (321)
434 PF10087 DUF2325: Uncharacteri 29.5 1.7E+02 0.0037 20.9 5.2 30 46-78 66-95 (97)
435 PRK05569 flavodoxin; Provision 29.3 1.9E+02 0.004 22.0 5.8 62 22-83 46-114 (141)
436 PRK10076 pyruvate formate lyas 29.1 1.5E+02 0.0032 25.0 5.5 66 15-81 80-159 (213)
437 PF00532 Peripla_BP_1: Peripla 29.0 3.8E+02 0.0083 23.2 11.5 141 49-262 25-170 (279)
438 TIGR00274 N-acetylmuramic acid 28.5 87 0.0019 27.8 4.2 31 38-68 136-166 (291)
439 PF01993 MTD: methylene-5,6,7, 28.5 71 0.0015 27.4 3.3 53 27-82 57-110 (276)
440 COG4483 Uncharacterized protei 28.3 70 0.0015 21.3 2.6 26 231-261 7-32 (68)
441 cd00291 SirA_YedF_YeeD SirA, Y 28.2 57 0.0012 21.4 2.4 38 44-83 16-53 (69)
442 TIGR01290 nifB nitrogenase cof 28.2 1.3E+02 0.0028 28.5 5.5 68 13-82 60-135 (442)
443 COG0528 PyrH Uridylate kinase 28.1 1.9E+02 0.004 24.9 5.8 56 24-82 4-68 (238)
444 cd00733 GlyRS_alpha_core Class 28.0 70 0.0015 27.6 3.2 49 223-271 79-133 (279)
445 PRK08116 hypothetical protein; 28.0 1.2E+02 0.0027 26.4 5.0 28 46-76 202-229 (268)
446 PF00710 Asparaginase: Asparag 27.9 1.5E+02 0.0033 26.5 5.7 45 17-63 217-261 (313)
447 COG4558 ChuT ABC-type hemin tr 27.8 74 0.0016 28.1 3.4 35 45-81 112-146 (300)
448 cd00859 HisRS_anticodon HisRS 27.8 1.7E+02 0.0037 19.7 4.9 47 33-81 6-52 (91)
449 PLN02951 Molybderin biosynthes 27.7 1.4E+02 0.0031 27.4 5.6 70 11-82 88-161 (373)
450 PF13466 STAS_2: STAS domain 27.6 1.4E+02 0.0031 20.0 4.4 59 18-82 19-80 (80)
451 TIGR02666 moaA molybdenum cofa 27.4 1.2E+02 0.0026 27.2 5.0 70 11-82 41-114 (334)
452 PF00308 Bac_DnaA: Bacterial d 27.4 30 0.00064 29.2 1.0 48 17-64 90-139 (219)
453 PRK09348 glyQ glycyl-tRNA synt 27.4 72 0.0016 27.6 3.2 46 223-268 83-134 (283)
454 PRK01018 50S ribosomal protein 27.3 1.5E+02 0.0032 21.5 4.6 30 36-65 13-42 (99)
455 TIGR00815 sulP high affinity s 27.2 70 0.0015 31.3 3.7 61 25-90 494-558 (563)
456 COG1092 Predicted SAM-dependen 27.1 1.9E+02 0.0041 27.0 6.2 53 24-77 290-351 (393)
457 TIGR00393 kpsF KpsF/GutQ famil 27.0 72 0.0016 27.5 3.4 34 38-71 57-90 (268)
458 PF13651 EcoRI_methylase: Aden 26.8 2.6E+02 0.0056 25.3 6.6 58 13-78 125-182 (336)
459 cd01520 RHOD_YbbB Member of th 26.7 1.6E+02 0.0035 22.1 5.0 17 15-32 3-19 (128)
460 KOG2469 IMP-GMP specific 5'-nu 26.6 49 0.0011 30.7 2.2 54 221-274 283-337 (424)
461 PRK13745 anaerobic sulfatase-m 26.5 1.1E+02 0.0024 28.5 4.8 43 40-82 151-196 (412)
462 COG3876 Uncharacterized protei 26.5 81 0.0018 28.3 3.5 108 19-128 118-236 (409)
463 COG1794 RacX Aspartate racemas 26.2 4.1E+02 0.009 22.7 9.5 79 45-134 65-150 (230)
464 COG1485 Predicted ATPase [Gene 26.2 1.7E+02 0.0037 26.8 5.5 50 19-73 125-176 (367)
465 cd01521 RHOD_PspE2 Member of t 26.2 87 0.0019 22.8 3.3 69 13-82 10-92 (110)
466 TIGR00642 mmCoA_mut_beta methy 26.1 1.8E+02 0.0039 28.9 6.2 45 33-82 551-596 (619)
467 KOG2134 Polynucleotide kinase 26.1 1.9E+02 0.0041 26.9 5.8 101 161-267 100-230 (422)
468 PF03033 Glyco_transf_28: Glyc 26.1 63 0.0014 24.4 2.6 33 44-82 15-47 (139)
469 PF00289 CPSase_L_chain: Carba 25.9 60 0.0013 24.1 2.3 29 33-63 5-33 (110)
470 PF02593 dTMP_synthase: Thymid 25.8 2.4E+02 0.0052 23.9 6.1 41 44-84 65-107 (217)
471 PRK11303 DNA-binding transcrip 25.7 4.5E+02 0.0098 22.9 17.7 38 231-269 253-291 (328)
472 PRK12570 N-acetylmuramic acid- 25.5 1.1E+02 0.0024 27.2 4.3 35 34-68 133-167 (296)
473 KOG3349 Predicted glycosyltran 25.3 1E+02 0.0022 24.6 3.4 38 43-81 89-128 (170)
474 PF02219 MTHFR: Methylenetetra 25.2 80 0.0017 27.8 3.4 48 252-303 87-134 (287)
475 TIGR00238 KamA family protein. 25.2 1.3E+02 0.0028 27.2 4.8 45 45-89 210-259 (331)
476 TIGR03677 rpl7ae 50S ribosomal 24.9 2E+02 0.0044 21.6 5.0 47 36-82 23-71 (117)
477 PF06506 PrpR_N: Propionate ca 24.9 2.1E+02 0.0045 23.0 5.5 61 210-273 93-153 (176)
478 TIGR00388 glyQ glycyl-tRNA syn 24.8 88 0.0019 27.3 3.3 46 223-268 80-131 (293)
479 COG2241 CobL Precorrin-6B meth 24.7 2.7E+02 0.0059 23.4 6.2 17 76-92 110-126 (210)
480 KOG3483 Uncharacterized conser 24.6 90 0.0019 21.4 2.7 41 222-263 34-74 (94)
481 COG2897 SseA Rhodanese-related 24.3 1.4E+02 0.0031 26.4 4.7 51 222-273 69-125 (285)
482 cd01533 4RHOD_Repeat_2 Member 24.3 2.7E+02 0.006 19.9 5.8 70 12-82 11-92 (109)
483 TIGR00519 asnASE_I L-asparagin 24.1 2.1E+02 0.0045 26.0 5.9 20 43-62 252-271 (336)
484 TIGR02493 PFLA pyruvate format 24.1 1.8E+02 0.0039 24.4 5.2 66 13-78 46-118 (235)
485 PF09587 PGA_cap: Bacterial ca 24.1 3.5E+02 0.0075 23.1 7.1 68 15-82 27-107 (250)
486 cd06299 PBP1_LacI_like_13 Liga 24.0 4.3E+02 0.0092 22.0 12.2 20 230-249 189-209 (265)
487 cd06660 Aldo_ket_red Aldo-keto 23.8 4.7E+02 0.01 22.5 9.4 60 17-79 98-162 (285)
488 cd01445 TST_Repeats Thiosulfat 23.8 2.5E+02 0.0053 21.6 5.5 49 223-272 75-131 (138)
489 TIGR01917 gly_red_sel_B glycin 23.7 1.5E+02 0.0033 27.7 4.9 68 36-105 282-366 (431)
490 cd03421 SirA_like_N SirA_like_ 23.7 87 0.0019 20.6 2.6 38 43-83 15-52 (67)
491 TIGR00343 pyridoxal 5'-phospha 23.6 5.2E+02 0.011 22.9 10.7 46 226-275 184-233 (287)
492 TIGR01501 MthylAspMutase methy 23.5 3.5E+02 0.0076 20.9 8.6 82 44-129 18-113 (134)
493 cd01473 vWA_CTRP CTRP for CS 23.4 3.7E+02 0.008 21.9 6.8 59 243-301 110-182 (192)
494 PRK00331 glucosamine--fructose 23.4 1.3E+02 0.0029 29.5 4.9 36 39-74 347-382 (604)
495 PF08353 DUF1727: Domain of un 23.3 2.8E+02 0.006 20.8 5.5 48 48-98 46-93 (113)
496 PRK04175 rpl7ae 50S ribosomal 23.3 2.2E+02 0.0047 21.6 5.0 47 36-82 27-75 (122)
497 cd03422 YedF YedF is a bacteri 23.2 78 0.0017 21.2 2.3 39 43-83 15-53 (69)
498 PF04055 Radical_SAM: Radical 23.0 2.4E+02 0.0052 21.3 5.5 68 13-82 28-102 (166)
499 PF14606 Lipase_GDSL_3: GDSL-l 22.9 79 0.0017 25.9 2.6 38 26-63 61-101 (178)
500 TIGR02690 resist_ArsH arsenica 22.7 3.2E+02 0.0068 23.2 6.3 44 39-82 103-159 (219)
No 1
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-50 Score=342.44 Aligned_cols=286 Identities=54% Similarity=0.855 Sum_probs=255.4
Q ss_pred hhHHHhhhccCEEEEeE--EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc-cCCCCeechH
Q 022007 16 NNITALFDSVDAFLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS-VSEDEIFSSS 92 (304)
Q Consensus 16 ~~~~~~~~~~k~i~fDi--tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~-~~~~~i~~~~ 92 (304)
+..+++++++++|+||+ |||.++.++||+.|+++.|++.|++++|+||||.++++++.++++++||. +.+++|++|+
T Consensus 13 ~~~~e~l~~~DtfifDcDGVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~v~e~~i~ssa 92 (306)
T KOG2882|consen 13 EEARELLDSFDTFIFDCDGVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNSVKEENIFSSA 92 (306)
T ss_pred HHHHHHHhhcCEEEEcCCcceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccccCcccccChH
Confidence 67888999999999999 99999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHhCCCCCCCeEEEEcChhHHHHHHHcCCcccCCCCCcchhhhhccc-cccccCCCccEEEEecCCCCCHHHHH
Q 022007 93 FAAAMYLKVNNFPQENKVYVIGGEGILEELRQAGYTGLGGPEDGEKRVQLKSN-CLFEHDKNVGAVVVGLDPHINYYKLQ 171 (304)
Q Consensus 93 ~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~ 171 (304)
..++.||++.. ...++||++|++++.++|+++|++......+....-....+ .....++++.||++++|..++|.++.
T Consensus 93 ~~~a~ylk~~~-~~~k~Vyvig~~gi~~eL~~aG~~~~g~~~~~~~~~~~~~~~~~~~~d~~VgAVvvg~D~hfsy~KL~ 171 (306)
T KOG2882|consen 93 YAIADYLKKRK-PFGKKVYVIGEEGIREELDEAGFEYFGGGPDGKDTDGAKSFVLSIGLDPDVGAVVVGYDEHFSYPKLM 171 (306)
T ss_pred HHHHHHHHHhC-cCCCeEEEecchhhhHHHHHcCceeecCCCCcccccccccchhhcCCCCCCCEEEEecccccCHHHHH
Confidence 99999998876 34589999999999999999999887654433222000011 11223678999999999999999999
Q ss_pred HHHHHHHcCCCceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCcEEEEcCC
Q 022007 172 YGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRMCMVGDR 251 (304)
Q Consensus 172 ~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~ 251 (304)
.++++|+ +|++.|++||.|...|...+..+++.|.+++.+..++++++...|||++.+++.++++++++|++++||||+
T Consensus 172 kA~~yLq-nP~clflatn~D~~~p~~~~~~ipG~G~~v~av~~~t~R~P~v~GKP~~~m~~~l~~~~~i~psRt~mvGDR 250 (306)
T KOG2882|consen 172 KALNYLQ-NPGCLFLATNRDATTPPTPGVEIPGAGSFVAAVKFATGRQPIVLGKPSTFMFEYLLEKFNIDPSRTCMVGDR 250 (306)
T ss_pred HHHHHhC-CCCcEEEeccCccccCCCCCeeccCCccHHHHHHHHhcCCCeecCCCCHHHHHHHHHHcCCCcceEEEEccc
Confidence 9999997 689999999999988877788999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHcCCeEEEEccCCCCccccCCC--CCCCCCcEEECCHHHHHHhhh
Q 022007 252 LDTDILFGQNAGCKTLLVLSGVTTQSTLQDP--SNNIQPDYYTNQVSDILELLG 303 (304)
Q Consensus 252 ~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~--~~~~~pd~v~~~l~el~~~l~ 303 (304)
+.+||..++++|++|++|++|.++.+++... .....|||+++++.++...+.
T Consensus 251 L~TDIlFG~~~G~~TLLvltGv~~led~~~~~~~~~~~PDyy~~~l~d~~~~~~ 304 (306)
T KOG2882|consen 251 LDTDILFGKNCGFKTLLVLSGVTTLEDILEAQGDNKMVPDYYADSLGDLLPLLN 304 (306)
T ss_pred chhhhhHhhccCcceEEEecCcCcHHHHHhcccccCCCCchHHhhHHHHhhhcc
Confidence 9999999999999999999999988877664 345689999999999987664
No 2
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-48 Score=334.76 Aligned_cols=262 Identities=42% Similarity=0.626 Sum_probs=238.0
Q ss_pred HHhhhccCEEEEeE--EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHh-CCCccCCCCeechHHHH
Q 022007 19 TALFDSVDAFLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHS-LGVSVSEDEIFSSSFAA 95 (304)
Q Consensus 19 ~~~~~~~k~i~fDi--tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~-lG~~~~~~~i~~~~~~~ 95 (304)
.+++++|++|+||+ |||+|.+++|||.++|++|+++|++++|+|||++|+++.+.++|+. +|.+..+++|+||+.++
T Consensus 2 ~~~~~~y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~at 81 (269)
T COG0647 2 FDVMDKYDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSGDAT 81 (269)
T ss_pred cchhhhcCEEEEcCcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHHHHH
Confidence 35788999999999 9999999999999999999999999999999999999999999999 66779999999999999
Q ss_pred HHHHHhCCCCCCCeEEEEcChhHHHHHHHcCCcccCCCCCcchhhhhccccccccCCCccEEEEecCCCCCHHHHHHHHH
Q 022007 96 AMYLKVNNFPQENKVYVIGGEGILEELRQAGYTGLGGPEDGEKRVQLKSNCLFEHDKNVGAVVVGLDPHINYYKLQYGTL 175 (304)
Q Consensus 96 ~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 175 (304)
++|+.+.. +.++||++|.+++.++++..|+..+...+ +..+++|++|.++.+.|.++.+++.
T Consensus 82 ~~~l~~~~--~~~kv~viG~~~l~~~l~~~G~~~~~~~~----------------~~~~d~Vv~g~d~~~~~e~l~~a~~ 143 (269)
T COG0647 82 ADYLAKQK--PGKKVYVIGEEGLKEELEGAGFELVDEEE----------------PARVDAVVVGLDRTLTYEKLAEALL 143 (269)
T ss_pred HHHHHhhC--CCCEEEEECCcchHHHHHhCCcEEeccCC----------------CCcccEEEEecCCCCCHHHHHHHHH
Confidence 99999753 33789999999999999999998864322 1236899999999999999999999
Q ss_pred HHHcCCCceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhh
Q 022007 176 CIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTD 255 (304)
Q Consensus 176 ~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~D 255 (304)
.+++ ++++||||+|..++.. .+.+++.|+++..++..+|.++...|||++.+|+.+++.++.++++++||||++.+|
T Consensus 144 ~i~~--g~~fI~tNpD~~~p~~-~g~~pgaGai~~~~~~~tg~~~~~~GKP~~~i~~~al~~~~~~~~~~~mVGD~~~TD 220 (269)
T COG0647 144 AIAA--GAPFIATNPDLTVPTE-RGLRPGAGAIAALLEQATGREPTVIGKPSPAIYEAALEKLGLDRSEVLMVGDRLDTD 220 (269)
T ss_pred HHHc--CCcEEEeCCCccccCC-CCCccCcHHHHHHHHHhhCCcccccCCCCHHHHHHHHHHhCCCcccEEEEcCCchhh
Confidence 9987 7999999999976654 458999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhhh
Q 022007 256 ILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELLG 303 (304)
Q Consensus 256 i~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l~ 303 (304)
|.+|+++||+|++|++|.++.+++.. .+.+|+|+.+|+.++...+.
T Consensus 221 I~~a~~~G~~t~LV~TGv~~~~~~~~--~~~~p~~v~~sl~~~~~~~~ 266 (269)
T COG0647 221 ILGAKAAGLDTLLVLTGVSSAEDLDR--AEVKPTYVVDSLAELITALK 266 (269)
T ss_pred HHHHHHcCCCEEEEccCCCChhhhhh--hccCCcchHhhHHHHHhhhh
Confidence 99999999999999999998777553 24689999999999987654
No 3
>PLN02645 phosphoglycolate phosphatase
Probab=100.00 E-value=3.3e-46 Score=333.50 Aligned_cols=294 Identities=70% Similarity=1.145 Sum_probs=249.2
Q ss_pred ccccchhhHHHhhhccCEEEEeE--EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCC
Q 022007 10 AELLSANNITALFDSVDAFLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDE 87 (304)
Q Consensus 10 ~~~~~~~~~~~~~~~~k~i~fDi--tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~ 87 (304)
+.+.+.+++.++++++|+|+||+ |||++++++||+.++|++|+++|++++++||++++++.++.++|+++|+++..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~ 92 (311)
T PLN02645 13 AQLLTLENADELIDSVETFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEE 92 (311)
T ss_pred cccCCHHHHHHHHHhCCEEEEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhh
Confidence 44588999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred eechHHHHHHHHHhCCCCCCCeEEEEcChhHHHHHHHcCCcccCCCCCcchhhhhccccccccCCCccEEEEecCCCCCH
Q 022007 88 IFSSSFAAAMYLKVNNFPQENKVYVIGGEGILEELRQAGYTGLGGPEDGEKRVQLKSNCLFEHDKNVGAVVVGLDPHINY 167 (304)
Q Consensus 88 i~~~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 167 (304)
|++|+..+..|++..+..+.+++|++|..++.+.+++.|+.......+...............++++++|+++++..++|
T Consensus 93 I~ts~~~~~~~l~~~~~~~~~~V~viG~~~~~~~l~~~Gi~~~~g~~~~~~~~~~~~~~~~~~~~~i~aVvvg~d~~~~~ 172 (311)
T PLN02645 93 IFSSSFAAAAYLKSINFPKDKKVYVIGEEGILEELELAGFQYLGGPEDGDKKIELKPGFLMEHDKDVGAVVVGFDRYINY 172 (311)
T ss_pred EeehHHHHHHHHHhhccCCCCEEEEEcCHHHHHHHHHCCCEEecCccccccccccccccccccCCCCCEEEEecCCCCCH
Confidence 99999999999997665444679999999999999999998754321110000000011122346779999999999999
Q ss_pred HHHHHHHHHHHcCCCceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCcEEE
Q 022007 168 YKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRMCM 247 (304)
Q Consensus 168 ~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~~~~ 247 (304)
..+..++.+++.++++.+|+||+|..++.......++.|.+...+....+..+...|||+|.+|+.+++++++++++++|
T Consensus 173 ~~l~~a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~ 252 (311)
T PLN02645 173 YKIQYATLCIRENPGCLFIATNRDAVTHLTDAQEWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICM 252 (311)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCCCCCCCCccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEE
Confidence 99999999998656999999999996544444567888988899998899888888999999999999999999999999
Q ss_pred EcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhhh
Q 022007 248 VGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELLG 303 (304)
Q Consensus 248 IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l~ 303 (304)
|||++.+||.+|+++||++++|.||.+..+++...+....|+++++++.++.+++.
T Consensus 253 VGD~~~~Di~~A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~~~~~~l~~~~~ 308 (311)
T PLN02645 253 VGDRLDTDILFGQNGGCKTLLVLSGVTSESMLLSPENKIQPDFYTSKISDFLTLKA 308 (311)
T ss_pred EcCCcHHHHHHHHHcCCCEEEEcCCCCCHHHHHhccCCCCCCEEECCHHHHHHHhh
Confidence 99997699999999999999999999887665432223579999999999998875
No 4
>PRK10444 UMP phosphatase; Provisional
Probab=100.00 E-value=6.9e-44 Score=307.71 Aligned_cols=243 Identities=32% Similarity=0.530 Sum_probs=221.9
Q ss_pred cCEEEEeE--EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHHHHHHHHhC
Q 022007 25 VDAFLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFAAAMYLKVN 102 (304)
Q Consensus 25 ~k~i~fDi--tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~ 102 (304)
+|+|+||+ |||++++++|+|.++|++|+++|++++++||++.++..++.++|+++|+++..++|+||+.+++.||++.
T Consensus 1 ~~~v~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~L~~~ 80 (248)
T PRK10444 1 IKNVICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQ 80 (248)
T ss_pred CcEEEEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEecHHHHHHHHHHhC
Confidence 58999999 9999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCCCeEEEEcChhHHHHHHHcCCcccCCCCCcchhhhhccccccccCCCccEEEEecCCCCCHHHHHHHHHHHHcCCC
Q 022007 103 NFPQENKVYVIGGEGILEELRQAGYTGLGGPEDGEKRVQLKSNCLFEHDKNVGAVVVGLDPHINYYKLQYGTLCIRENPG 182 (304)
Q Consensus 103 ~~~~~~~v~~~g~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~ 182 (304)
+ .+++|++|..++.+++.+.|++.. +.++++|+++.+.+++|..+..+..+++. +
T Consensus 81 ~---~~~v~~~g~~~l~~~l~~~g~~~~--------------------~~~~~~Vvvg~~~~~~~~~l~~a~~~l~~--g 135 (248)
T PRK10444 81 E---GKKAYVIGEGALIHELYKAGFTIT--------------------DINPDFVIVGETRSYNWDMMHKAAYFVAN--G 135 (248)
T ss_pred C---CCEEEEEcCHHHHHHHHHCcCEec--------------------CCCCCEEEEeCCCCCCHHHHHHHHHHHHC--C
Confidence 3 357999999999999999998753 23568999999999999999999998864 9
Q ss_pred ceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHc
Q 022007 183 CLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNA 262 (304)
Q Consensus 183 ~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~a 262 (304)
+++++||+|...+ ...++.|.+...++.++|.++...|||+|.+|+.+++++++++++++||||++.+||.+|+++
T Consensus 136 ~~~i~~n~D~~~~----g~~~~~G~~~~~l~~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~ 211 (248)
T PRK10444 136 ARFIATNPDTHGR----GFYPACGALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQA 211 (248)
T ss_pred CEEEEECCCCCCC----CCcCcHHHHHHHHHHHhCCCccccCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHc
Confidence 9999999999432 478999999999999999999889999999999999999999999999999977999999999
Q ss_pred CCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHH
Q 022007 263 GCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDI 298 (304)
Q Consensus 263 G~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el 298 (304)
|+++++|.||.+..+++.. ....|+++++++.|+
T Consensus 212 G~~~vlV~~G~~~~~~l~~--~~~~pd~~~~sl~el 245 (248)
T PRK10444 212 GLETILVLSGVSTLDDIDS--MPFRPSWIYPSVADI 245 (248)
T ss_pred CCCEEEECCCCCCHHHHhc--CCCCCCEEECCHHHh
Confidence 9999999999988776642 235899999999998
No 5
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=100.00 E-value=8.2e-44 Score=313.94 Aligned_cols=273 Identities=43% Similarity=0.737 Sum_probs=229.7
Q ss_pred ccCEEEEeE--EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHHHHHHHHh
Q 022007 24 SVDAFLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFAAAMYLKV 101 (304)
Q Consensus 24 ~~k~i~fDi--tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~ 101 (304)
++|+|+||+ |||++.+++||+.++|++|+++|++++++|||+.+++.++.++|+++|++...++|++|+..++.||++
T Consensus 1 ~~~~~~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~l~~ 80 (279)
T TIGR01452 1 RAQGFIFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFSSALCAARLLRQ 80 (279)
T ss_pred CccEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEecHHHHHHHHHHh
Confidence 589999999 999999999999999999999999999999999999999999999999999899999999999999997
Q ss_pred CCCCCCCeEEEEcChhHHHHHHHcCCcccCCCCCcchhhhhccccccccCCCccEEEEecCCCCCHHHHHHHHHHHHcCC
Q 022007 102 NNFPQENKVYVIGGEGILEELRQAGYTGLGGPEDGEKRVQLKSNCLFEHDKNVGAVVVGLDPHINYYKLQYGTLCIRENP 181 (304)
Q Consensus 102 ~~~~~~~~v~~~g~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~l~~~~ 181 (304)
+.. +.++++++|.+++.+++++.|+......++...............++++++|+++++.+++|+++.++++.|+++
T Consensus 81 ~~~-~~~~v~~iG~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvv~~d~~~~y~~i~~~l~~L~~~- 158 (279)
T TIGR01452 81 PPD-APKAVYVIGEEGLRAELDAAGIRLAGDPSAGDGAAPRGSGAFMKLEENVGAVVVGYDEHFSYAKLREACAHLREP- 158 (279)
T ss_pred hCc-CCCEEEEEcCHHHHHHHHHCCCEEecCcccccccchhhcccccccCCCCCEEEEecCCCCCHHHHHHHHHHHhcC-
Confidence 432 246799999999999999999987643322110000000011223467899999999999999999999999875
Q ss_pred CceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHH
Q 022007 182 GCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQN 261 (304)
Q Consensus 182 ~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~ 261 (304)
|.++++||++...+.......++.+.+...+..+++.+....|||+|.+|+.+++++|++|++++||||++.+||++|++
T Consensus 159 g~~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~lmIGD~~~tDI~~A~~ 238 (279)
T TIGR01452 159 GCLFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPARTLMVGDRLETDILFGHR 238 (279)
T ss_pred CCEEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhEEEECCChHHHHHHHHH
Confidence 78899999998665433445677888888888888999888999999999999999999999999999997799999999
Q ss_pred cCCeEEEEccCCCCccccCCC----CCCCCCcEEECCHHHH
Q 022007 262 AGCKTLLVLSGVTTQSTLQDP----SNNIQPDYYTNQVSDI 298 (304)
Q Consensus 262 aG~~ti~V~~G~~~~~~~~~~----~~~~~pd~v~~~l~el 298 (304)
+||++++|.||.+..+++... +....|||+++++.|+
T Consensus 239 aGi~si~V~~G~~~~~~l~~~~~~~~~~~~Pd~~~~~l~~l 279 (279)
T TIGR01452 239 CGMTTVLVLSGVSRLEEAQEYLAAGQHDLVPDYVVESLADL 279 (279)
T ss_pred cCCcEEEECCCCCCHHHHHhhhcccccCCCCCEEecccccC
Confidence 999999999999887766531 2346899999999874
No 6
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=100.00 E-value=1.1e-43 Score=307.61 Aligned_cols=247 Identities=32% Similarity=0.511 Sum_probs=222.9
Q ss_pred cCEEEEeE--EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHHHHHHHHhC
Q 022007 25 VDAFLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFAAAMYLKVN 102 (304)
Q Consensus 25 ~k~i~fDi--tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~ 102 (304)
||+|+||+ |||++++++|+|.++|++|+++|++++|+||||+|+++++.++|+++|+++..++|++|+.++++||++.
T Consensus 1 ~~~~~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~~~~~~l~~~ 80 (249)
T TIGR01457 1 YKGYLIDLDGTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASMATADYMNDL 80 (249)
T ss_pred CCEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHHHHHHHHHhc
Confidence 68999999 9999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCeEEEEcChhHHHHHHHcCCcccCCCCCcchhhhhccccccccCCCccEEEEecCCCCCHHHHHHHHHHHHcCCC
Q 022007 103 NFPQENKVYVIGGEGILEELRQAGYTGLGGPEDGEKRVQLKSNCLFEHDKNVGAVVVGLDPHINYYKLQYGTLCIRENPG 182 (304)
Q Consensus 103 ~~~~~~~v~~~g~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~ 182 (304)
+. .++++++|.+++.+++...|+... ..++++|+++++..++|+++..++..++. +
T Consensus 81 ~~--~~~v~~lg~~~l~~~l~~~g~~~~--------------------~~~~~~Vvvg~~~~~~y~~l~~a~~~l~~--g 136 (249)
T TIGR01457 81 KL--EKTVYVIGEEGLKEAIKEAGYVED--------------------KEKPDYVVVGLDRQIDYEKFATATLAIRK--G 136 (249)
T ss_pred CC--CCEEEEEcChhHHHHHHHcCCEec--------------------CCCCCEEEEeCCCCCCHHHHHHHHHHHHC--C
Confidence 43 368999999999999999998653 23568999999999999999999999864 8
Q ss_pred ceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHc
Q 022007 183 CLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNA 262 (304)
Q Consensus 183 ~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~a 262 (304)
+++++||+|..++.. ....++.|++...++.+++.+....+||+|.+|+.+++++++++++++||||++.+||.+|+++
T Consensus 137 ~~~i~tN~D~~~~~~-~~~~~~~G~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~VGD~~~~Di~~a~~~ 215 (249)
T TIGR01457 137 AHFIGTNGDLAIPTE-RGLLPGNGSLITVLEVATGVKPVYIGKPNAIIMEKAVEHLGTEREETLMVGDNYLTDIRAGIDA 215 (249)
T ss_pred CeEEEECCCCCCCCC-CCCCCCcHHHHHHHHHHhCCCccccCCChHHHHHHHHHHcCCCcccEEEECCCchhhHHHHHHc
Confidence 899999999977643 3467899999999999999999999999999999999999999999999999966999999999
Q ss_pred CCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHH
Q 022007 263 GCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDI 298 (304)
Q Consensus 263 G~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el 298 (304)
||++++|.+|.+..+++.. ....|+++++++.++
T Consensus 216 G~~~v~v~~G~~~~~~~~~--~~~~pd~~v~~l~~~ 249 (249)
T TIGR01457 216 GIDTLLVHTGVTKAEEVAG--LPIAPTHVVSSLAEW 249 (249)
T ss_pred CCcEEEEcCCCCCHHHHhc--CCCCCCEEeCChhhC
Confidence 9999999999987665432 235799999999874
No 7
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=100.00 E-value=5.2e-40 Score=285.91 Aligned_cols=248 Identities=25% Similarity=0.384 Sum_probs=211.9
Q ss_pred cCEEEEeE--EEEcCCc----cCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHHHHHH
Q 022007 25 VDAFLFDC--VIWKGDK----LIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFAAAMY 98 (304)
Q Consensus 25 ~k~i~fDi--tL~~~~~----~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~ 98 (304)
+|+|+||+ |||++++ ++|+|.++|++|+++|++++++|||++++++++.++|+++|+++.+++|+||+..++.|
T Consensus 1 ~k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts~~~~~~~ 80 (257)
T TIGR01458 1 VKGVLLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTPAPAARQL 80 (257)
T ss_pred CCEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcHHHHHHHH
Confidence 47999999 9999887 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCeEEEEcChhHHHHHHHcCCcccCCCCCcchhhhhccccccccCCCccEEEEecCC-CCCHHHHHHHHHHH
Q 022007 99 LKVNNFPQENKVYVIGGEGILEELRQAGYTGLGGPEDGEKRVQLKSNCLFEHDKNVGAVVVGLDP-HINYYKLQYGTLCI 177 (304)
Q Consensus 99 l~~~~~~~~~~v~~~g~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~l~~l 177 (304)
|++.+. +++++|.+.+.+.+. ++. ..++++|+++.+. +++|+++.++++.|
T Consensus 81 l~~~~~----~~~~~g~~~~~~~~~--~~~----------------------~~~~~~Vv~g~~~~~~~y~~l~~a~~~L 132 (257)
T TIGR01458 81 LEEKQL----RPMLLVDDRVLPDFD--GID----------------------TSDPNCVVMGLAPEHFSYQILNQAFRLL 132 (257)
T ss_pred HHhcCC----CeEEEECccHHHHhc--cCC----------------------CCCCCEEEEecccCccCHHHHHHHHHHH
Confidence 998653 488989888877764 321 1245799999865 79999999999999
Q ss_pred HcCCCceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHH
Q 022007 178 RENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDIL 257 (304)
Q Consensus 178 ~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~ 257 (304)
+..+...+++||++..++... ...++.|.+...+....+.++...+||+|.+|+.++++++++|++++||||++.+||.
T Consensus 133 ~~~~~~~~iatn~~~~~~~~~-~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~vGD~~~~Di~ 211 (257)
T TIGR01458 133 LDGAKPLLIAIGKGRYYKRKD-GLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAVMIGDDCRDDVG 211 (257)
T ss_pred HcCCCCEEEEeCCCCCCcCCC-CCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEEEECCCcHHHHH
Confidence 875334588999999665433 3567888888888888888888889999999999999999999999999999669999
Q ss_pred HHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhhh
Q 022007 258 FGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELLG 303 (304)
Q Consensus 258 ~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l~ 303 (304)
+|+++||++++|.+|.....+... ....|+++++++.|+.++|.
T Consensus 212 ~a~~~G~~~i~v~~G~~~~~~~~~--~~~~pd~~~~sl~el~~~l~ 255 (257)
T TIGR01458 212 GAQDCGMRGIQVRTGKYRPSDEEK--INVPPDLTCDSLPHAVDLIL 255 (257)
T ss_pred HHHHcCCeEEEECCCCCChHHhcc--cCCCCCEEECCHHHHHHHHh
Confidence 999999999999999754332211 12579999999999998764
No 8
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=100.00 E-value=2.4e-38 Score=253.42 Aligned_cols=250 Identities=30% Similarity=0.419 Sum_probs=220.4
Q ss_pred hccCEEEEeE--EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHHHHHHHH
Q 022007 23 DSVDAFLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFAAAMYLK 100 (304)
Q Consensus 23 ~~~k~i~fDi--tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~ 100 (304)
..++++++|+ |||.+..++|||.||+++|+.++..|.|+||.+..+...+.++|.++||++++++|++|..++++|+.
T Consensus 5 ~~v~gvLlDlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~ 84 (262)
T KOG3040|consen 5 RAVKGVLLDLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLE 84 (262)
T ss_pred cccceEEEeccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHH
Confidence 4689999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCeEEEEcChhHHHHHHHcCCcccCCCCCcchhhhhccccccccCCCccEEEEecC-CCCCHHHHHHHHHHHHc
Q 022007 101 VNNFPQENKVYVIGGEGILEELRQAGYTGLGGPEDGEKRVQLKSNCLFEHDKNVGAVVVGLD-PHINYYKLQYGTLCIRE 179 (304)
Q Consensus 101 ~~~~~~~~~v~~~g~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~l~~l~~ 179 (304)
++++. -|++-.+..++.+. |+.. ..+++|+.|.. +.|+|..+..+.+.|.+
T Consensus 85 ~~~lr----P~l~v~d~a~~dF~--gidT----------------------s~pn~VViglape~F~y~~ln~AFrvL~e 136 (262)
T KOG3040|consen 85 ENQLR----PYLIVDDDALEDFD--GIDT----------------------SDPNCVVIGLAPEGFSYQRLNRAFRVLLE 136 (262)
T ss_pred hcCCC----ceEEEcccchhhCC--CccC----------------------CCCCeEEEecCcccccHHHHHHHHHHHHc
Confidence 98764 45544555555553 3322 24679999975 57999999999999999
Q ss_pred CCCceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHH
Q 022007 180 NPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFG 259 (304)
Q Consensus 180 ~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a 259 (304)
.+..++|+.++.+ +........++.|.+...+++.+|.+....|||+|..|+.+++.+|++|++++||||++..|+-+|
T Consensus 137 ~~k~~LIai~kgr-yykr~~Gl~lgpG~fv~aLeyatg~~a~vvGKP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGA 215 (262)
T KOG3040|consen 137 MKKPLLIAIGKGR-YYKRVDGLCLGPGPFVAALEYATGCEATVVGKPSPFFFESALQALGVDPEEAVMIGDDLNDDVGGA 215 (262)
T ss_pred CCCCeEEEecCce-eeeeccccccCchHHHHHhhhccCceEEEecCCCHHHHHHHHHhcCCChHHheEEccccccchhhH
Confidence 8678899999999 445556688899999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhhh
Q 022007 260 QNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELLG 303 (304)
Q Consensus 260 ~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l~ 303 (304)
+.+||+.|+|.||...+.+..+ ....||.+++++.|.+++|.
T Consensus 216 q~~GMrgilVkTGK~rpsDe~k--~~~~p~~~~d~f~~AVd~I~ 257 (262)
T KOG3040|consen 216 QACGMRGILVKTGKFRPSDEEK--PPVPPDLTADNFADAVDLII 257 (262)
T ss_pred hhhcceeEEeeccccCCccccc--CCCCcchhhhhHHHHHHHHH
Confidence 9999999999999988744333 34689999999999999875
No 9
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=100.00 E-value=1.8e-37 Score=278.22 Aligned_cols=269 Identities=22% Similarity=0.242 Sum_probs=215.5
Q ss_pred EEEEeE--EEEcCCccCccHHHHHHHHHHC----CCcEEEEeCCCCcCHHHHHHHH-HhCCCccCCCCeechHHHHHHHH
Q 022007 27 AFLFDC--VIWKGDKLIDGVRQTLDVLRSK----GKKLIFVTNNSRRSRRQYAHKF-HSLGVSVSEDEIFSSSFAAAMYL 99 (304)
Q Consensus 27 ~i~fDi--tL~~~~~~~~~a~eal~~L~~~----G~~~~i~Tn~s~r~~~~~~~~l-~~lG~~~~~~~i~~~~~~~~~~l 99 (304)
+|+||+ |||++..++|+|.++|+.|+++ |++++++|||+++++.++.+.| +++|+++..++|++++..+..++
T Consensus 2 ~~ifD~DGvL~~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s~~~~~~ll 81 (321)
T TIGR01456 2 GFAFDIDGVLFRGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQVIQSHSPYKSLV 81 (321)
T ss_pred EEEEeCcCceECCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhhhHHHHHHH
Confidence 689999 9999999999999999999998 9999999999999999999988 78999999999999999887777
Q ss_pred HhCCCCCCCeEEEEcChhHHHHHHHcCCcccCCCCCc-chhhhhc---------cc---ccc--ccCCCccEEEEecCCC
Q 022007 100 KVNNFPQENKVYVIGGEGILEELRQAGYTGLGGPEDG-EKRVQLK---------SN---CLF--EHDKNVGAVVVGLDPH 164 (304)
Q Consensus 100 ~~~~~~~~~~v~~~g~~~~~~~l~~~g~~~~~~~~~~-~~~~~~~---------~~---~~~--~~~~~~~~v~~~~~~~ 164 (304)
... . .+++++|+.++.+.+++.|+......++. ...+... .. ... ...+++++|+++.+..
T Consensus 82 ~~~--~--~~v~viG~~~~~~~l~~~G~~~vv~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aVvv~~d~~ 157 (321)
T TIGR01456 82 NKY--E--KRILAVGTGSVRGVAEGYGFQNVVHQDEIVRYFRDIDPFSGMSDEQVREYSRDIPDLTTKRFDAVLVFNDPV 157 (321)
T ss_pred HHc--C--CceEEEeChHHHHHHHHcCCcccccHHHHHhcCCCCCcccccCHHHhhcccccccccCCCceeEEEEecCch
Confidence 543 2 36899999999999999998754211000 0000000 00 000 0125789999999888
Q ss_pred CCHHHHHHHHHHHHcC---------CCceEEEecCCCccCCCCCccccChHHHHHHHHH----hhCCCC--cccCCCcHH
Q 022007 165 INYYKLQYGTLCIREN---------PGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCA----STEKEP--IVVGKPSTF 229 (304)
Q Consensus 165 ~~~~~~~~~l~~l~~~---------~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~----~~~~~~--~~~gKP~~~ 229 (304)
..|.+++.++.+++.. +.+++++||+|..++...+..+++.|++...++. ++|.++ ...|||++.
T Consensus 158 ~~~~~l~~~~~~l~~~g~~g~~~~~~~~~~i~~n~D~~~p~~~g~~~~g~Ga~~~~l~~~~~~~tg~~~~~~~~GKP~~~ 237 (321)
T TIGR01456 158 DWAADIQIISDALNSEGLPGEKSGKPSIPIYFSNQDLLWANEYKLNRFGQGAFRLLLERIYLELNGKPLQYYTLGKPTKL 237 (321)
T ss_pred HHhhhHHHHHHHHhCCCCcCCCCCCCCCCEEEeCCCEeeccCCCCceechHHHHHHHHHHHHHhcCCCcceEEcCCCChH
Confidence 7788899999888753 2378999999997776555458899999999988 456643 678999999
Q ss_pred HHHHHHHHc--------CC-----CCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHH
Q 022007 230 MMEILSKKF--------QI-----ASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVS 296 (304)
Q Consensus 230 ~~~~al~~l--------g~-----~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~ 296 (304)
+|+.+++.+ +. ++++++||||++.+||.+|+++||+|++|.+|..+.++.. ....|+++++|+.
T Consensus 238 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG~~~~~~~~---~~~~p~~vv~~l~ 314 (321)
T TIGR01456 238 TYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKTGVYNGGDDL---KECKPTLIVNDVF 314 (321)
T ss_pred HHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEecccccCCCCCC---CCCCCCEEECCHH
Confidence 999999888 43 4579999999988999999999999999999977655432 2357999999999
Q ss_pred HHHHhh
Q 022007 297 DILELL 302 (304)
Q Consensus 297 el~~~l 302 (304)
|+.++|
T Consensus 315 e~~~~i 320 (321)
T TIGR01456 315 DAVTKI 320 (321)
T ss_pred HHHHHh
Confidence 999876
No 10
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=100.00 E-value=2.7e-36 Score=259.63 Aligned_cols=230 Identities=41% Similarity=0.588 Sum_probs=200.2
Q ss_pred EEEeE--EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHh-CCCccCCCCeechHHHHHHHHHhCCC
Q 022007 28 FLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHS-LGVSVSEDEIFSSSFAAAMYLKVNNF 104 (304)
Q Consensus 28 i~fDi--tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~-lG~~~~~~~i~~~~~~~~~~l~~~~~ 104 (304)
|+||+ |||++.+++|+|.++|+.|+++|++++++|||++|++.++.++|.+ +|+++.++++++|+.+++.|++++.
T Consensus 1 ~lfD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~~~- 79 (236)
T TIGR01460 1 FLFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQRF- 79 (236)
T ss_pred CEEeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHHhC-
Confidence 58999 9999999999999999999999999999999999999999999999 8999999999999999999998643
Q ss_pred CCCCeEEEEcChhHHHHHHHcCCcc--cCCCCCcchhhhhccccccccCCCccEEEEecCCCCCHHHHHHHHHHHHcCCC
Q 022007 105 PQENKVYVIGGEGILEELRQAGYTG--LGGPEDGEKRVQLKSNCLFEHDKNVGAVVVGLDPHINYYKLQYGTLCIRENPG 182 (304)
Q Consensus 105 ~~~~~v~~~g~~~~~~~l~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~ 182 (304)
+.++++++|..++.++++..|++. .... .....++.+++|+.+.+.+++|..+..+..++++ ++
T Consensus 80 -~~~~v~v~G~~~~~~~l~~~g~~~~~~~~~------------~~~~~~~~~~~vv~~~~~~~~~~~~~~a~~~l~~-~~ 145 (236)
T TIGR01460 80 -EGEKVYVIGVGELRESLEGLGFRNDFFDDI------------DHLAIEKIPAAVIVGEPSDFSYDELAKAAYLLAE-GD 145 (236)
T ss_pred -CCCEEEEECCHHHHHHHHHcCCcCcccCcc------------cccccCCCCeEEEECCCCCcCHHHHHHHHHHHhC-CC
Confidence 346799999999999999999763 1100 0011133467899999999999999999888875 24
Q ss_pred ceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCcE-EEEcCCchhhHHHHHH
Q 022007 183 CLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRM-CMVGDRLDTDILFGQN 261 (304)
Q Consensus 183 ~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~~-~~IGD~~~~Di~~a~~ 261 (304)
+++++||+|...+...+...++.|.+.+.++.+.+.+....+||+|.+|+.++++++++++++ +||||++.+||.+|++
T Consensus 146 ~~~i~tN~d~~~~~~~g~~~~~~g~~~~~i~~~~g~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~ 225 (236)
T TIGR01460 146 VPFIAANRDDLVRLGDGRFRPGAGAIAAGIKELSGREPTVVGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKN 225 (236)
T ss_pred CeEEEECCCCCCCCCCCcEeecchHHHHHHHHHhCceeeeecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHH
Confidence 899999998755555555778899999999999999888899999999999999999999887 9999996699999999
Q ss_pred cCCeEEEEccC
Q 022007 262 AGCKTLLVLSG 272 (304)
Q Consensus 262 aG~~ti~V~~G 272 (304)
+|+++++|.||
T Consensus 226 ~G~~~i~v~~G 236 (236)
T TIGR01460 226 AGFDTLLVLTG 236 (236)
T ss_pred CCCcEEEEecC
Confidence 99999999887
No 11
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=100.00 E-value=3.4e-32 Score=235.28 Aligned_cols=230 Identities=25% Similarity=0.260 Sum_probs=185.9
Q ss_pred HHhhhccCEEEEeE--EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCcc-CCCCeechHHHH
Q 022007 19 TALFDSVDAFLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSV-SEDEIFSSSFAA 95 (304)
Q Consensus 19 ~~~~~~~k~i~fDi--tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~-~~~~i~~~~~~~ 95 (304)
.++++++++++||+ |||++.+++||+.++|++|+++|++++|+|| +++++.++.++|+++|++. .++.|++++...
T Consensus 2 ~~~~~~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN-~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~~~~ 80 (242)
T TIGR01459 2 FDLINDYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSN-SPRNIFSLHKTLKSLGINADLPEMIISSGEIA 80 (242)
T ss_pred hhhhhcCCEEEEecccccccCCccCccHHHHHHHHHHCCCEEEEEeC-CCCChHHHHHHHHHCCCCccccceEEccHHHH
Confidence 46889999999999 9999999999999999999999999999999 5678888889999999998 889999999887
Q ss_pred HHHHHh----CCCCCCCeEEEEcChhH-HHHHHHcCCcccCCCCCcchhhhhccccccccCCCccEEEEecC--CCCCHH
Q 022007 96 AMYLKV----NNFPQENKVYVIGGEGI-LEELRQAGYTGLGGPEDGEKRVQLKSNCLFEHDKNVGAVVVGLD--PHINYY 168 (304)
Q Consensus 96 ~~~l~~----~~~~~~~~v~~~g~~~~-~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~ 168 (304)
..++.. .+.. ..+++++|.... .+.+...+..... ...++++|+++.+ ..++|+
T Consensus 81 ~~~l~~~~~~~~~~-~~~~~~vGd~~~d~~~~~~~~~~~~~------------------~~~~~~~vvv~~~~~~~~~~~ 141 (242)
T TIGR01459 81 VQMILESKKRFDIR-NGIIYLLGHLENDIINLMQCYTTDDE------------------NKANASLITIYRSENEKLDLD 141 (242)
T ss_pred HHHHHhhhhhccCC-CceEEEeCCcccchhhhcCCCccccC------------------CcccCcEEEEcCCCcccCCHH
Confidence 777753 2222 356888888653 4555444432110 0234678888765 458899
Q ss_pred HHHHHHHHHHcCCCceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCC-CCcEEE
Q 022007 169 KLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIA-SSRMCM 247 (304)
Q Consensus 169 ~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~-~~~~~~ 247 (304)
++.++++.+.++ ++++++||++..++. .....++.|.+...+.. .|.+....+||+|++|+.++++++.. +++++|
T Consensus 142 ~~~~~l~~l~~~-g~~~i~tN~d~~~~~-~~~~~~~~g~~~~~i~~-~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~~ 218 (242)
T TIGR01459 142 EFDELFAPIVAR-KIPNICANPDRGINQ-HGIYRYGAGYYAELIKQ-LGGKVIYSGKPYPAIFHKALKECSNIPKNRMLM 218 (242)
T ss_pred HHHHHHHHHHhC-CCcEEEECCCEeccC-CCceEecccHHHHHHHH-hCCcEecCCCCCHHHHHHHHHHcCCCCcccEEE
Confidence 999999988665 888999999996664 33456777777776655 56677779999999999999999875 679999
Q ss_pred EcCCchhhHHHHHHcCCeEEEEcc
Q 022007 248 VGDRLDTDILFGQNAGCKTLLVLS 271 (304)
Q Consensus 248 IGD~~~~Di~~a~~aG~~ti~V~~ 271 (304)
|||++.+||.+|+++||++++|++
T Consensus 219 vGD~~~~Di~~a~~~G~~~i~v~t 242 (242)
T TIGR01459 219 VGDSFYTDILGANRLGIDTALVLT 242 (242)
T ss_pred ECCCcHHHHHHHHHCCCeEEEEeC
Confidence 999977999999999999999975
No 12
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=99.90 E-value=7.8e-23 Score=174.21 Aligned_cols=245 Identities=23% Similarity=0.266 Sum_probs=193.0
Q ss_pred EEEEeE--EEEcCCccCccHHHHHHHHHHC----CCcEEEEeCCCCcCHHHHHHHHHh-CCCccCCCCeechHHHHHHHH
Q 022007 27 AFLFDC--VIWKGDKLIDGVRQTLDVLRSK----GKKLIFVTNNSRRSRRQYAHKFHS-LGVSVSEDEIFSSSFAAAMYL 99 (304)
Q Consensus 27 ~i~fDi--tL~~~~~~~~~a~eal~~L~~~----G~~~~i~Tn~s~r~~~~~~~~l~~-lG~~~~~~~i~~~~~~~~~~l 99 (304)
+|+||| ||++|.+++|++.+|++.|.++ .+|++++||+++.+...-+++|.+ ||+++++++|+.|+.....+.
T Consensus 37 gfafDIDGVL~RG~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~dqviqSHsP~r~l~ 116 (389)
T KOG1618|consen 37 GFAFDIDGVLFRGHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSADQVIQSHSPFRLLV 116 (389)
T ss_pred eEEEecccEEEecCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCHHHHHhhcChHHHHh
Confidence 789999 9999999999999999999998 899999999999999999999986 999999999999999988776
Q ss_pred HhCCCCCCCeEEEEcChhHHHHHHHcCCcccCCCCCcchh-hh-------------hccccccccCCCccEEEEecCCCC
Q 022007 100 KVNNFPQENKVYVIGGEGILEELRQAGYTGLGGPEDGEKR-VQ-------------LKSNCLFEHDKNVGAVVVGLDPHI 165 (304)
Q Consensus 100 ~~~~~~~~~~v~~~g~~~~~~~l~~~g~~~~~~~~~~~~~-~~-------------~~~~~~~~~~~~~~~v~~~~~~~~ 165 (304)
..+ .+++++.|....++..+..|++.+...++...- +. +....+.+.-..+++|+.-.+..-
T Consensus 117 ~~~----~k~vLv~G~~~vr~vAegyGFk~Vvt~D~l~k~f~~ldP~t~~~~~~k~~~~~R~~~~~r~ieAv~~~~dPv~ 192 (389)
T KOG1618|consen 117 EYH----YKRVLVVGQGSVREVAEGYGFKNVVTVDELAKYFPLLDPFTDLSRELKTTKLARDRELFRRIEAVLLLGDPVR 192 (389)
T ss_pred hhh----hceEEEecCCcHHHHhhccCccceeeHHHHHHhCCCcccccchhHhhhcccchhccccccceeEEEEecCchh
Confidence 332 257999999999999999999876543221111 00 111123334567899988777665
Q ss_pred CHHHHHHHHHHHHcC-------------CCceEEEecCCCccCCCCCccccChHHHHHHHHHh----hCCC--CcccCCC
Q 022007 166 NYYKLQYGTLCIREN-------------PGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCAS----TEKE--PIVVGKP 226 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~-------------~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~----~~~~--~~~~gKP 226 (304)
.-.+++-.++++..+ |.+.++++|.|..|.........|.|++.-.++.+ +|.+ ....|||
T Consensus 193 W~~dlQli~D~l~snG~~gt~~~a~~~~Phipiy~sN~DLlW~~e~~lpR~G~GaF~l~lesiy~kltGk~L~~~t~GKP 272 (389)
T KOG1618|consen 193 WETDLQLIMDVLLSNGSPGTGRLATGPYPHIPIYASNMDLLWMAEYKLPRFGHGAFRLCLESIYQKLTGKPLRYTTLGKP 272 (389)
T ss_pred hhhhHHHHHHHHhcCCCCCcccccCCCCCCCceEEecccccccccCCCccccchHHHHHHHHHHHHhcCCcccccccCCC
Confidence 556788888777643 23368999999977776666778888887666554 4433 3689999
Q ss_pred cHHHHHHHHHHc--------C-CCCCcEEEEcCCchhhHHHHH---------------HcCCeEEEEccCCCC
Q 022007 227 STFMMEILSKKF--------Q-IASSRMCMVGDRLDTDILFGQ---------------NAGCKTLLVLSGVTT 275 (304)
Q Consensus 227 ~~~~~~~al~~l--------g-~~~~~~~~IGD~~~~Di~~a~---------------~aG~~ti~V~~G~~~ 275 (304)
++-.|++|...+ + -+++..+||||+|.+|+.+|+ .-||.+|+|.||...
T Consensus 273 t~ltY~~A~~vl~~~ak~~~~~~~~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~~w~SILV~TGV~~ 345 (389)
T KOG1618|consen 273 TKLTYDYAEDVLRRQAKRRGGAAPIKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANYGWISILVRTGVYN 345 (389)
T ss_pred ceehHHhHHHHHHHHHHhhcccCCcceeeeecCCCcccccccccccccccccccccccCCCceEEEEeeeeec
Confidence 999998876654 2 256789999999999999998 789999999999766
No 13
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=99.87 E-value=8.5e-22 Score=146.56 Aligned_cols=99 Identities=52% Similarity=0.892 Sum_probs=87.9
Q ss_pred EEEeE--EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHHHHHHHHhCCCC
Q 022007 28 FLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFAAAMYLKVNNFP 105 (304)
Q Consensus 28 i~fDi--tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~~~~ 105 (304)
|+||+ |||++.+++|||.++|++|+++|++++|+|||++++++++.++|+++|++++.++|+||+.+++.||+++.
T Consensus 1 ~l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~~~-- 78 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKEHK-- 78 (101)
T ss_dssp EEEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHHHT--
T ss_pred CEEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHhcC--
Confidence 68999 99999999999999999999999999999999999999999999999999999999999999999999852
Q ss_pred CCCeEEEEcChhHHHHHHHcCCc
Q 022007 106 QENKVYVIGGEGILEELRQAGYT 128 (304)
Q Consensus 106 ~~~~v~~~g~~~~~~~l~~~g~~ 128 (304)
+.+++|++|++++.+++++.|++
T Consensus 79 ~~~~v~vlG~~~l~~~l~~~G~e 101 (101)
T PF13344_consen 79 GGKKVYVLGSDGLREELREAGFE 101 (101)
T ss_dssp TSSEEEEES-HHHHHHHHHTTEE
T ss_pred CCCEEEEEcCHHHHHHHHHcCCC
Confidence 35799999999999999999864
No 14
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.79 E-value=7.5e-19 Score=149.75 Aligned_cols=130 Identities=19% Similarity=0.169 Sum_probs=108.0
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 165 INYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 165 ~~~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
..|+++.+++..|+.++...+|+||+..... .......++..+|+.++|.+.....||+|..+..+++.+|++|++
T Consensus 89 ~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~----~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~ 164 (220)
T COG0546 89 RLFPGVKELLAALKSAGYKLGIVTNKPEREL----DILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEE 164 (220)
T ss_pred ccCCCHHHHHHHHHhCCCeEEEEeCCcHHHH----HHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhh
Confidence 3588999999999988334588999877332 223333446678888889888999999999999999999999889
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhhh
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELLG 303 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l~ 303 (304)
++||||+ .+||++|++||+++++|.||+...+.+.. ..||++++++.||..++.
T Consensus 165 ~l~VGDs-~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~----~~~d~vi~~~~el~~~l~ 218 (220)
T COG0546 165 ALMVGDS-LNDILAAKAAGVPAVGVTWGYNSREELAQ----AGADVVIDSLAELLALLA 218 (220)
T ss_pred eEEECCC-HHHHHHHHHcCCCEEEEECCCCCCcchhh----cCCCEEECCHHHHHHHHh
Confidence 9999999 99999999999999999999864444443 589999999999998775
No 15
>PRK06769 hypothetical protein; Validated
Probab=99.79 E-value=2.8e-18 Score=140.66 Aligned_cols=79 Identities=25% Similarity=0.385 Sum_probs=68.1
Q ss_pred cccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCc------cccCCCCCCCCCcEEECC
Q 022007 221 IVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQ------STLQDPSNNIQPDYYTNQ 294 (304)
Q Consensus 221 ~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~------~~~~~~~~~~~pd~v~~~ 294 (304)
...+||+|++|..++++++++|++|+||||+ .+|+.+|+++||++++|.+|.+.. +++. ...|++++++
T Consensus 89 ~~~~KP~p~~~~~~~~~l~~~p~~~i~IGD~-~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~l~----~~~~~~~~~~ 163 (173)
T PRK06769 89 CECRKPSTGMLLQAAEKHGLDLTQCAVIGDR-WTDIVAAAKVNATTILVRTGAGYDALHTYRDKWA----HIEPNYIAEN 163 (173)
T ss_pred CCCCCCCHHHHHHHHHHcCCCHHHeEEEcCC-HHHHHHHHHCCCeEEEEecCCCchhhhhhhcccc----cCCCcchhhC
Confidence 3468999999999999999999999999999 799999999999999999987542 1222 2579999999
Q ss_pred HHHHHHhhhC
Q 022007 295 VSDILELLGQ 304 (304)
Q Consensus 295 l~el~~~l~~ 304 (304)
+.|+.++|.+
T Consensus 164 ~~el~~~l~~ 173 (173)
T PRK06769 164 FEDAVNWILN 173 (173)
T ss_pred HHHHHHHHhC
Confidence 9999987743
No 16
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.78 E-value=3.3e-18 Score=147.60 Aligned_cols=125 Identities=14% Similarity=0.080 Sum_probs=101.2
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCcE
Q 022007 166 NYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRM 245 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~~ 245 (304)
.|+++.+.++.|++. ...+++||.+... ...++..+|+.+++.+.....||+|++|..+++++|++|++|
T Consensus 114 ~~~gv~~~L~~L~~~-~~l~i~Tn~~~~~---------~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 183 (238)
T PRK10748 114 VPQATHDTLKQLAKK-WPLVAITNGNAQP---------ELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEI 183 (238)
T ss_pred CCccHHHHHHHHHcC-CCEEEEECCCchH---------HHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHE
Confidence 478899999999874 5668899976521 223467889999999888899999999999999999999999
Q ss_pred EEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhh
Q 022007 246 CMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELL 302 (304)
Q Consensus 246 ~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l 302 (304)
+||||++.+||.+|+++||+++||..+...... ..+....|++.+.++.||.++|
T Consensus 184 ~~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~--~~~~~~~p~~~i~~l~el~~~~ 238 (238)
T PRK10748 184 LHVGDDLTTDVAGAIRCGMQACWINPENGDLMQ--TWDSRLLPHIEISRLASLTSLI 238 (238)
T ss_pred EEEcCCcHHHHHHHHHCCCeEEEEcCCCccccc--cccccCCCCEEECCHHHHHhhC
Confidence 999999669999999999999999876543111 1112257999999999998875
No 17
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.77 E-value=1.5e-17 Score=136.87 Aligned_cols=73 Identities=27% Similarity=0.334 Sum_probs=63.8
Q ss_pred cccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeE-EEEccCCCCccccCCCCCCCCCcEEECCHHHHH
Q 022007 221 IVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKT-LLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDIL 299 (304)
Q Consensus 221 ~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~t-i~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~ 299 (304)
...+||+|++|..+++++|+++++++||||+ .+||++|+++|+++ ++|.+|........ ..|+++++++.||.
T Consensus 102 ~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs-~~Di~aA~~aG~~~~i~v~~g~~~~~~~~-----~~ad~~i~~~~el~ 175 (176)
T TIGR00213 102 CDCRKPKPGMLLQARKELHIDMAQSYMVGDK-LEDMQAGVAAKVKTNVLVRTGKPITPEAE-----NIADWVLNSLADLP 175 (176)
T ss_pred CCCCCCCHHHHHHHHHHcCcChhhEEEEcCC-HHHHHHHHHCCCcEEEEEecCCccccccc-----ccCCEEeccHHHhh
Confidence 4468999999999999999999999999999 89999999999998 89999976433222 36999999999986
No 18
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.76 E-value=1.9e-18 Score=150.46 Aligned_cols=127 Identities=14% Similarity=0.134 Sum_probs=100.0
Q ss_pred CHHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHH-HHhhCCCCcccCCCcHHHHHHHHHHcCCC-C
Q 022007 166 NYYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAM-CASTEKEPIVVGKPSTFMMEILSKKFQIA-S 242 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~gKP~~~~~~~al~~lg~~-~ 242 (304)
.|+++.+.++.|+++ |.+ .|+||...... ..+....++..+| +.+++.+.+..+||+|++|..+++++|+. |
T Consensus 100 ~~pg~~e~L~~L~~~-g~~l~IvT~~~~~~~----~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~ 174 (253)
T TIGR01422 100 PIPGVIEVIAYLRAR-GIKIGSTTGYTREMM----DVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDV 174 (253)
T ss_pred cCCCHHHHHHHHHHC-CCeEEEECCCcHHHH----HHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCc
Confidence 478899999999887 664 78898765221 1122222344443 66788888889999999999999999995 9
Q ss_pred CcEEEEcCCchhhHHHHHHcCCeEEEEccCCCC-----------------------ccccCCCCCCCCCcEEECCHHHHH
Q 022007 243 SRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTT-----------------------QSTLQDPSNNIQPDYYTNQVSDIL 299 (304)
Q Consensus 243 ~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~-----------------------~~~~~~~~~~~~pd~v~~~l~el~ 299 (304)
++|+||||+ .+|+++|+++||++|+|.+|.+. .+++.. ..||++++++.|+.
T Consensus 175 ~~~l~IGDs-~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~v~~~~~el~ 249 (253)
T TIGR01422 175 AACVKVGDT-VPDIEEGRNAGMWTVGLILSSNELGLSEEEYRALDPAELEARRAEATARLKA----AGAHYVIDTLAELP 249 (253)
T ss_pred hheEEECCc-HHHHHHHHHCCCeEEEEecCCcccCCCHHHHHhCCHHHHHHHHHHHHHHHHh----cCCCEehhcHHHHH
Confidence 999999999 79999999999999999999762 123332 58999999999998
Q ss_pred Hhh
Q 022007 300 ELL 302 (304)
Q Consensus 300 ~~l 302 (304)
++|
T Consensus 250 ~~~ 252 (253)
T TIGR01422 250 AVI 252 (253)
T ss_pred Hhh
Confidence 876
No 19
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.76 E-value=1.9e-18 Score=121.65 Aligned_cols=74 Identities=39% Similarity=0.620 Sum_probs=67.5
Q ss_pred cCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHH
Q 022007 223 VGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDI 298 (304)
Q Consensus 223 ~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el 298 (304)
+|||+|.+|+.+++++++++++++||||++.+||++|+++|+++++|.+|....+++.. ....||||++++.|+
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~--~~~~pd~vv~~l~e~ 75 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEK--AEHKPDYVVDDLKEA 75 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHH--SSSTTSEEESSGGGH
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhc--cCCCCCEEECCHHhC
Confidence 69999999999999999999999999999999999999999999999999988776542 225899999999986
No 20
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.75 E-value=1.4e-18 Score=150.75 Aligned_cols=122 Identities=14% Similarity=0.047 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHcCCCc-eEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGC-LFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~-~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.|+++.+.+..|+++ |. ..|+||+..... .......++..+|+.+++.+.+..+||+|++|..+++++|++|++
T Consensus 109 l~pgv~e~L~~L~~~-g~~l~I~Tn~~~~~~----~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 183 (248)
T PLN02770 109 PLNGLYKLKKWIEDR-GLKRAAVTNAPRENA----ELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDH 183 (248)
T ss_pred cCccHHHHHHHHHHc-CCeEEEEeCCCHHHH----HHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCChhH
Confidence 478899999999887 65 488999876332 122222346678888889998889999999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHH
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDI 298 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el 298 (304)
|+||||+ .+|+++|+++|+++++|.+|.. .+.+.. ..|+++++++.|+
T Consensus 184 ~l~vgDs-~~Di~aA~~aGi~~i~v~~g~~-~~~l~~----~~a~~vi~~~~e~ 231 (248)
T PLN02770 184 TFVFEDS-VSGIKAGVAAGMPVVGLTTRNP-ESLLME----AKPTFLIKDYEDP 231 (248)
T ss_pred EEEEcCC-HHHHHHHHHCCCEEEEEeCCCC-HHHHhh----cCCCEEeccchhh
Confidence 9999999 7999999999999999999963 333332 4799999999983
No 21
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.74 E-value=4.6e-18 Score=144.92 Aligned_cols=127 Identities=17% Similarity=0.176 Sum_probs=102.6
Q ss_pred CHHHHHHHHHHHHcCCCc-eEEEecCCCccCCCCCccccChHHHH--HHHHHhhCCCCcccCCCcHHHHHHHHHHcCCC-
Q 022007 166 NYYKLQYGTLCIRENPGC-LFIATNRDAVGHLTDLQEWPGAGCMV--AAMCASTEKEPIVVGKPSTFMMEILSKKFQIA- 241 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~-~~i~tn~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~- 241 (304)
.|+++.+.++.|+++ |. ..++||...... ...+...++. .+|+.+++.+....+||+|++|+.+++++|++
T Consensus 88 l~~G~~~~L~~L~~~-g~~~~ivT~~~~~~~----~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~ 162 (220)
T TIGR03351 88 ALPGAEEAFRSLRSS-GIKVALTTGFDRDTA----ERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQD 162 (220)
T ss_pred cCCCHHHHHHHHHHC-CCEEEEEeCCchHHH----HHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCC
Confidence 477889999999877 66 478899776322 1222333355 66777888888888999999999999999997
Q ss_pred CCcEEEEcCCchhhHHHHHHcCCeE-EEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhh
Q 022007 242 SSRMCMVGDRLDTDILFGQNAGCKT-LLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELL 302 (304)
Q Consensus 242 ~~~~~~IGD~~~~Di~~a~~aG~~t-i~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l 302 (304)
|++++||||+ .+|+++|+++||.+ ++|.+|....+.+.. ..|+++++++.++.+++
T Consensus 163 ~~~~~~igD~-~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~----~~~~~~i~~~~~l~~~~ 219 (220)
T TIGR03351 163 VQSVAVAGDT-PNDLEAGINAGAGAVVGVLTGAHDAEELSR----HPHTHVLDSVADLPALL 219 (220)
T ss_pred hhHeEEeCCC-HHHHHHHHHCCCCeEEEEecCCCcHHHHhh----cCCceeecCHHHHHHhh
Confidence 7999999999 79999999999999 999998766555543 47999999999998875
No 22
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.74 E-value=1.1e-16 Score=132.35 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=66.6
Q ss_pred cccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCC--cEEECCHHHH
Q 022007 221 IVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQP--DYYTNQVSDI 298 (304)
Q Consensus 221 ~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~p--d~v~~~l~el 298 (304)
...+||+|++|..+++++|+++++++||||+ .+|+.+|+++||.+++|.+|........ ..| +++++++.++
T Consensus 99 ~~~~KP~p~~~~~~~~~l~~~~~~~~~VgDs-~~Di~~A~~aG~~~i~v~~g~~~~~~~~-----~~~~~~~ii~~l~el 172 (181)
T PRK08942 99 CDCRKPKPGMLLSIAERLNIDLAGSPMVGDS-LRDLQAAAAAGVTPVLVRTGKGVTTLAE-----GAAPGTWVLDSLADL 172 (181)
T ss_pred CcCCCCCHHHHHHHHHHcCCChhhEEEEeCC-HHHHHHHHHCCCeEEEEcCCCCchhhhc-----ccCCCceeecCHHHH
Confidence 3468999999999999999999999999999 7999999999999999999976432222 245 9999999999
Q ss_pred HHhhh
Q 022007 299 LELLG 303 (304)
Q Consensus 299 ~~~l~ 303 (304)
.+++.
T Consensus 173 ~~~l~ 177 (181)
T PRK08942 173 PQALK 177 (181)
T ss_pred HHHHH
Confidence 98775
No 23
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.74 E-value=1.5e-17 Score=141.71 Aligned_cols=125 Identities=26% Similarity=0.252 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHcCCCc-eEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGC-LFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~-~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.++++.+.++.|+++ |. .+++||.+.... .......++..+|+.+++.+....+||+|++|+.+++++|+++++
T Consensus 95 ~~~g~~~~L~~L~~~-g~~~~i~Tn~~~~~~----~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~ 169 (221)
T TIGR02253 95 VYPGVRDTLMELRES-GYRLGIITDGLPVKQ----WEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEE 169 (221)
T ss_pred CCCCHHHHHHHHHHC-CCEEEEEeCCchHHH----HHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChhh
Confidence 477888999999887 55 478899865221 112222336678888888888889999999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHH
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDI 298 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el 298 (304)
++||||++.+|+.+|+++||++|+|.+|........ ....|+++++++.|+
T Consensus 170 ~~~igDs~~~di~~A~~aG~~~i~~~~~~~~~~~~~---~~~~~~~~i~~~~el 220 (221)
T TIGR02253 170 AVMVGDRLDKDIKGAKNLGMKTVWINQGKSSKMEDD---VYPYPDYEISSLREL 220 (221)
T ss_pred EEEECCChHHHHHHHHHCCCEEEEECCCCCcccccc---cccCCCeeeCcHHhh
Confidence 999999954899999999999999999875432211 113689999999886
No 24
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.73 E-value=1.2e-17 Score=145.35 Aligned_cols=123 Identities=14% Similarity=0.131 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHcCCCc-eEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGC-LFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~-~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.|+++.+.+..|+++ |. .+|+||+..... .......++..+|+.+++++....+||+|++|..+++++|++|++
T Consensus 110 l~pg~~e~L~~L~~~-g~~l~I~Tn~~~~~~----~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~ 184 (260)
T PLN03243 110 LRPGSREFVQALKKH-EIPIAVASTRPRRYL----ERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPER 184 (260)
T ss_pred cCCCHHHHHHHHHHC-CCEEEEEeCcCHHHH----HHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHH
Confidence 378899999999987 65 478899776221 122222346678888999998889999999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHh
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILEL 301 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~ 301 (304)
|+||||+ .+|+++|+++||++++|. |......+. .|+++++++.|+..+
T Consensus 185 ~l~IgDs-~~Di~aA~~aG~~~i~v~-g~~~~~~l~------~ad~vi~~~~el~~~ 233 (260)
T PLN03243 185 CIVFGNS-NSSVEAAHDGCMKCVAVA-GKHPVYELS------AGDLVVRRLDDLSVV 233 (260)
T ss_pred eEEEcCC-HHHHHHHHHcCCEEEEEe-cCCchhhhc------cCCEEeCCHHHHHHH
Confidence 9999999 899999999999999996 655444332 589999999998754
No 25
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.72 E-value=1.5e-17 Score=145.87 Aligned_cols=128 Identities=14% Similarity=0.083 Sum_probs=98.1
Q ss_pred CHHHHHHHHHHHHcCCCc-eEEEecCCCccCCCCCccccChHHHHHH-HHHhhCCCCcccCCCcHHHHHHHHHHcCCC-C
Q 022007 166 NYYKLQYGTLCIRENPGC-LFIATNRDAVGHLTDLQEWPGAGCMVAA-MCASTEKEPIVVGKPSTFMMEILSKKFQIA-S 242 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~-~~i~tn~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~gKP~~~~~~~al~~lg~~-~ 242 (304)
.|+++.+.+..|+++ |. .+|+||....... ......++..+ ++.+++.+.+..+||+|++|..+++++|+. +
T Consensus 102 ~~pg~~elL~~L~~~-g~~l~I~T~~~~~~~~----~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~ 176 (267)
T PRK13478 102 PIPGVLEVIAALRAR-GIKIGSTTGYTREMMD----VVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDV 176 (267)
T ss_pred CCCCHHHHHHHHHHC-CCEEEEEcCCcHHHHH----HHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCC
Confidence 478899999999887 65 4788987662211 11111112233 356677888888999999999999999996 6
Q ss_pred CcEEEEcCCchhhHHHHHHcCCeEEEEccCCCC-----------------------ccccCCCCCCCCCcEEECCHHHHH
Q 022007 243 SRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTT-----------------------QSTLQDPSNNIQPDYYTNQVSDIL 299 (304)
Q Consensus 243 ~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~-----------------------~~~~~~~~~~~~pd~v~~~l~el~ 299 (304)
++|+||||+ .+|+++|+++||++|+|.+|... .+.+.. ..|+++++++.++.
T Consensus 177 ~e~l~IGDs-~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~a~~vi~~~~~l~ 251 (267)
T PRK13478 177 AACVKVDDT-VPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERARARLRA----AGAHYVIDTIADLP 251 (267)
T ss_pred cceEEEcCc-HHHHHHHHHCCCEEEEEccCcccccCCHHHHHhcCHHHHHHHHHHHHHHHHH----cCCCeehhhHHHHH
Confidence 999999999 79999999999999999999863 123332 47999999999998
Q ss_pred Hhhh
Q 022007 300 ELLG 303 (304)
Q Consensus 300 ~~l~ 303 (304)
++|.
T Consensus 252 ~~l~ 255 (267)
T PRK13478 252 AVIA 255 (267)
T ss_pred HHHH
Confidence 8763
No 26
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.71 E-value=1.6e-17 Score=140.06 Aligned_cols=129 Identities=19% Similarity=0.214 Sum_probs=105.8
Q ss_pred CHHHHHHHHHHHHcCCCc-eEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGC-LFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~-~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.|+++.+.++.|+++ |. .+++||...... .......++..+|+.+++.+....+||+|++|+.+++++|++|++
T Consensus 76 ~~~g~~~~L~~L~~~-g~~~~i~Sn~~~~~~----~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~ 150 (205)
T TIGR01454 76 VFPGVPELLAELRAD-GVGTAIATGKSGPRA----RSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPED 150 (205)
T ss_pred cCCCHHHHHHHHHHC-CCeEEEEeCCchHHH----HHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhh
Confidence 477889999999887 55 588899766221 112222235567788888888888999999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhhhC
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELLGQ 304 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l~~ 304 (304)
++||||+ .+|+++|+++||++++|.||.++.+++.. ..|+++++++.++.+++++
T Consensus 151 ~l~igD~-~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~----~~~~~~~~~~~~l~~~~~~ 205 (205)
T TIGR01454 151 AVMVGDA-VTDLASARAAGTATVAALWGEGDAGELLA----ARPDFLLRKPQSLLALCRS 205 (205)
T ss_pred eEEEcCC-HHHHHHHHHcCCeEEEEEecCCChhhhhh----cCCCeeeCCHHHHHHHhhC
Confidence 9999999 79999999999999999999987766543 4799999999999988763
No 27
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.70 E-value=3.3e-17 Score=143.91 Aligned_cols=127 Identities=14% Similarity=0.156 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHHHcCCCc-eEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGC-LFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~-~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.|+++.+.++.|+++ |. .+++||...... ........+..+|+.+++.+....+||+|++|+.+++++|+++++
T Consensus 102 ~~~g~~e~L~~Lk~~-g~~l~ivTn~~~~~~----~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~ 176 (272)
T PRK13223 102 VYPGVRDTLKWLKKQ-GVEMALITNKPERFV----APLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQ 176 (272)
T ss_pred cCCCHHHHHHHHHHC-CCeEEEEECCcHHHH----HHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhH
Confidence 478889999999877 55 577898765221 111111224456777788888888999999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhh
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELL 302 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l 302 (304)
|+||||+ .+||++|+++||++++|.+|......+.. ..|+++++++.+|.+++
T Consensus 177 ~l~IGD~-~~Di~aA~~aGi~~i~v~~G~~~~~~l~~----~~~~~vi~~l~el~~~~ 229 (272)
T PRK13223 177 SLFVGDS-RSDVLAAKAAGVQCVALSYGYNHGRPIAE----ESPALVIDDLRALLPGC 229 (272)
T ss_pred EEEECCC-HHHHHHHHHCCCeEEEEecCCCCchhhhh----cCCCEEECCHHHHHHHH
Confidence 9999999 89999999999999999999876555443 37999999999998764
No 28
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.70 E-value=9e-17 Score=142.09 Aligned_cols=121 Identities=11% Similarity=0.058 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChH---HHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCC
Q 022007 166 NYYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAG---CMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIA 241 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g---~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~ 241 (304)
.|+++.+.++.|+++ |.+ +|+||....... .+.... .+...|. +++.+.+..+||+|++|..+++++|++
T Consensus 145 l~pGv~elL~~L~~~-g~~l~IvTn~~~~~~~----~~l~~~~~~~~~~~~~-~v~~~~~~~~KP~p~~~~~a~~~~~~~ 218 (286)
T PLN02779 145 LRPGVLRLMDEALAA-GIKVAVCSTSNEKAVS----KIVNTLLGPERAQGLD-VFAGDDVPKKKPDPDIYNLAAETLGVD 218 (286)
T ss_pred chhhHHHHHHHHHHC-CCeEEEEeCCCHHHHH----HHHHHhccccccCceE-EEeccccCCCCCCHHHHHHHHHHhCcC
Confidence 488999999999887 654 788997652211 010000 0111122 225666778999999999999999999
Q ss_pred CCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHH
Q 022007 242 SSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDIL 299 (304)
Q Consensus 242 ~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~ 299 (304)
|++++||||+ .+|+++|+++||++|+|.+|....+++. .|+++++++.++.
T Consensus 219 p~~~l~IGDs-~~Di~aA~~aG~~~i~v~~g~~~~~~l~------~ad~vi~~~~~l~ 269 (286)
T PLN02779 219 PSRCVVVEDS-VIGLQAAKAAGMRCIVTKSSYTADEDFS------GADAVFDCLGDVP 269 (286)
T ss_pred hHHEEEEeCC-HHhHHHHHHcCCEEEEEccCCccccccC------CCcEEECChhhcc
Confidence 9999999999 7999999999999999999987655442 6899999998874
No 29
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.68 E-value=3.6e-16 Score=133.85 Aligned_cols=128 Identities=23% Similarity=0.267 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCcE
Q 022007 166 NYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRM 245 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~~ 245 (304)
.|+++.+.+..++.+ -..+++||...... ...+...| +..+|+.++.++.....||+|++|+.+++++|++|+++
T Consensus 100 ~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~---~~~l~~~g-l~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~ 174 (229)
T COG1011 100 DYPEALEALKELGKK-YKLGILTNGARPHQ---ERKLRQLG-LLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEA 174 (229)
T ss_pred cChhHHHHHHHHHhh-ccEEEEeCCChHHH---HHHHHHcC-ChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceE
Confidence 467777888887764 34688999644121 11223334 78999999999999999999999999999999999999
Q ss_pred EEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhhh
Q 022007 246 CMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELLG 303 (304)
Q Consensus 246 ~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l~ 303 (304)
+||||++.+||.+|+++||++||+..+.....+. . ..|++.+.++.++.+++.
T Consensus 175 l~VgD~~~~di~gA~~~G~~~vwi~~~~~~~~~~----~-~~~~~~i~~l~~l~~~~~ 227 (229)
T COG1011 175 LFVGDSLENDILGARALGMKTVWINRGGKPLPDA----L-EAPDYEISSLAELLDLLE 227 (229)
T ss_pred EEECCChhhhhHHHHhcCcEEEEECCCCCCCCCC----c-cCCceEEcCHHHHHHHHh
Confidence 9999999999999999999999998775432000 1 379999999999998875
No 30
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.67 E-value=2.2e-16 Score=142.73 Aligned_cols=121 Identities=13% Similarity=0.093 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHcCCCc-eEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGC-LFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~-~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.|+++.+.++.|+++ |. .+|+||+..... .......++..+|+.+++.+.+..+||+|++|..+++++|++|++
T Consensus 217 l~pGa~ElL~~Lk~~-GiklaIaSn~~~~~~----~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Pee 291 (381)
T PLN02575 217 LRTGSQEFVNVLMNY-KIPMALVSTRPRKTL----ENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPER 291 (381)
T ss_pred cCcCHHHHHHHHHHC-CCeEEEEeCCCHHHH----HHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCccc
Confidence 478999999999987 65 478899776221 122333346788999999999889999999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHH
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDIL 299 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~ 299 (304)
|+||||+ ..||++|+++||++|+|.++... .++ ..++++++++.|+.
T Consensus 292 cl~IGDS-~~DIeAAk~AGm~~IgV~~~~~~-~~l------~~Ad~iI~s~~EL~ 338 (381)
T PLN02575 292 CIVFGNS-NQTVEAAHDARMKCVAVASKHPI-YEL------GAADLVVRRLDELS 338 (381)
T ss_pred EEEEcCC-HHHHHHHHHcCCEEEEECCCCCh-hHh------cCCCEEECCHHHHH
Confidence 9999999 89999999999999999876422 222 25899999999984
No 31
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.67 E-value=5.1e-17 Score=137.90 Aligned_cols=128 Identities=21% Similarity=0.227 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.|+++.+.++.|+++ |.+ .++||+..... ...+...++..+|+.+++.+....+||+|++|+.++++++++|++
T Consensus 83 ~~~g~~~~l~~L~~~-g~~~~i~S~~~~~~~----~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~ 157 (214)
T PRK13288 83 EYETVYETLKTLKKQ-GYKLGIVTTKMRDTV----EMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEE 157 (214)
T ss_pred cCcCHHHHHHHHHHC-CCeEEEEeCCCHHHH----HHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHH
Confidence 478899999999887 664 77899765221 112222335677888889998899999999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhhh
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELLG 303 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l~ 303 (304)
++||||+ .+|+++|+++|+++++|.||....+++.. ..|+++++++.++.+++.
T Consensus 158 ~~~iGDs-~~Di~aa~~aG~~~i~v~~g~~~~~~l~~----~~~~~~i~~~~~l~~~i~ 211 (214)
T PRK13288 158 ALMVGDN-HHDILAGKNAGTKTAGVAWTIKGREYLEQ----YKPDFMLDKMSDLLAIVG 211 (214)
T ss_pred EEEECCC-HHHHHHHHHCCCeEEEEcCCCCCHHHHhh----cCcCEEECCHHHHHHHHh
Confidence 9999999 79999999999999999999766554433 379999999999998875
No 32
>PLN02940 riboflavin kinase
Probab=99.67 E-value=8.1e-17 Score=147.73 Aligned_cols=123 Identities=15% Similarity=0.144 Sum_probs=98.7
Q ss_pred CHHHHHHHHHHHHcCCCc-eEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGC-LFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~-~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.|+++.+.++.|+++ |. ..|+||....... ..+....++..+|+.+++.+.+..+||+|++|..+++++|++|++
T Consensus 94 l~pGv~elL~~Lk~~-g~~l~IvTn~~~~~~~---~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~ 169 (382)
T PLN02940 94 ALPGANRLIKHLKSH-GVPMALASNSPRANIE---AKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSN 169 (382)
T ss_pred CCcCHHHHHHHHHHC-CCcEEEEeCCcHHHHH---HHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhH
Confidence 478889999999887 55 5888997663211 111112346678888999999889999999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHH
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDIL 299 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~ 299 (304)
|+||||+ .+|+++|+++||++++|.+|....... ..|+++++++.|+.
T Consensus 170 ~l~VGDs-~~Di~aA~~aGi~~I~v~~g~~~~~~~------~~ad~~i~sl~el~ 217 (382)
T PLN02940 170 CLVIEDS-LPGVMAGKAAGMEVIAVPSIPKQTHLY------SSADEVINSLLDLQ 217 (382)
T ss_pred EEEEeCC-HHHHHHHHHcCCEEEEECCCCcchhhc------cCccEEeCCHhHcC
Confidence 9999999 799999999999999999986533211 36899999999875
No 33
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.67 E-value=8.5e-17 Score=137.99 Aligned_cols=127 Identities=17% Similarity=0.141 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.|+++.+.++.|+++ |.+ .++||....... ......++..+|+.+++.+.+..+||+|++|..+++++|++|++
T Consensus 96 ~~pg~~~~L~~L~~~-g~~l~i~Tn~~~~~~~----~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~ 170 (229)
T PRK13226 96 LFDGVEGMLQRLECA-GCVWGIVTNKPEYLAR----LILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTD 170 (229)
T ss_pred eCCCHHHHHHHHHHC-CCeEEEECCCCHHHHH----HHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhh
Confidence 478888999999887 654 788997652211 11222234566777778888888999999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEccCCCCcc-ccCCCCCCCCCcEEECCHHHHHHhh
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQS-TLQDPSNNIQPDYYTNQVSDILELL 302 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~-~~~~~~~~~~pd~v~~~l~el~~~l 302 (304)
|+||||+ .+|+++|+++|+++++|.+|..... .+.. ..|+++++++.||.+.+
T Consensus 171 ~l~IGDs-~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~----~~~~~~i~~~~el~~~~ 224 (229)
T PRK13226 171 CVYVGDD-ERDILAARAAGMPSVAALWGYRLHDDDPLA----WQADVLVEQPQLLWNPA 224 (229)
T ss_pred EEEeCCC-HHHHHHHHHCCCcEEEEeecCCCCCcChhh----cCCCeeeCCHHHHHHHh
Confidence 9999999 8999999999999999999986332 2222 47999999999998876
No 34
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.66 E-value=1.2e-16 Score=135.25 Aligned_cols=127 Identities=18% Similarity=0.268 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHcCCCc-eEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGC-LFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~-~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.|+++.+.++.|+++ |. ..++||...... .......++..+|+.+++.+....+||+|++|..+++++|++|++
T Consensus 86 ~~~g~~~~L~~l~~~-g~~~~i~S~~~~~~~----~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~ 160 (213)
T TIGR01449 86 VFPGVEATLGALRAK-GLRLGLVTNKPTPLA----RPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQ 160 (213)
T ss_pred cCCCHHHHHHHHHHC-CCeEEEEeCCCHHHH----HHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhH
Confidence 478889999999887 55 578899765221 112222235567777888888888999999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhh
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELL 302 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l 302 (304)
++||||+ .+|+++|+++|+++++|.||....+.+.. ..|+++++++.|+..+|
T Consensus 161 ~~~igDs-~~d~~aa~~aG~~~i~v~~g~~~~~~l~~----~~a~~~i~~~~~l~~~~ 213 (213)
T TIGR01449 161 MVYVGDS-RVDIQAARAAGCPSVLLTYGYRYGEAIDL----LPPDVLYDSLNELPPLL 213 (213)
T ss_pred eEEeCCC-HHHHHHHHHCCCeEEEEccCCCCCcchhh----cCCCeEeCCHHHHHhhC
Confidence 9999999 89999999999999999999876544432 37999999999998764
No 35
>PRK11587 putative phosphatase; Provisional
Probab=99.65 E-value=1.2e-16 Score=136.00 Aligned_cols=120 Identities=18% Similarity=0.133 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHHcCCCc-eEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGC-LFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~-~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.|+++.+.+..|+++ |. .+++||+..... .......++ ..++.+++.+.....||+|++|..+++++|++|++
T Consensus 84 ~~pg~~e~L~~L~~~-g~~~~ivTn~~~~~~----~~~l~~~~l-~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~ 157 (218)
T PRK11587 84 ALPGAIALLNHLNKL-GIPWAIVTSGSVPVA----SARHKAAGL-PAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQE 157 (218)
T ss_pred eCcCHHHHHHHHHHc-CCcEEEEcCCCchHH----HHHHHhcCC-CCccEEEEHHHhcCCCCCcHHHHHHHHHcCCCccc
Confidence 478999999999887 65 578899765211 011111111 12344556666778899999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHH
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDIL 299 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~ 299 (304)
|+||||+ ..|+++|+++||++++|.+|... ... ..|+++++++.|+.
T Consensus 158 ~l~igDs-~~di~aA~~aG~~~i~v~~~~~~-~~~------~~~~~~~~~~~el~ 204 (218)
T PRK11587 158 CVVVEDA-PAGVLSGLAAGCHVIAVNAPADT-PRL------DEVDLVLHSLEQLT 204 (218)
T ss_pred EEEEecc-hhhhHHHHHCCCEEEEECCCCch-hhh------ccCCEEecchhhee
Confidence 9999999 89999999999999999887532 211 26899999999874
No 36
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.64 E-value=4e-15 Score=116.54 Aligned_cols=47 Identities=32% Similarity=0.372 Sum_probs=44.1
Q ss_pred cCCCcHHHHHHHHHHc-CCCCCcEEEEcC-CchhhHHHHHHcCCeEEEEc
Q 022007 223 VGKPSTFMMEILSKKF-QIASSRMCMVGD-RLDTDILFGQNAGCKTLLVL 270 (304)
Q Consensus 223 ~gKP~~~~~~~al~~l-g~~~~~~~~IGD-~~~~Di~~a~~aG~~ti~V~ 270 (304)
..||+|++|+.+++++ +++|++++|||| + .+|+.+|+++|+++++|.
T Consensus 83 ~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~-~~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 83 CRKPKPGMFLEALKRFNEIDPEESVYVGDQD-LTDLQAAKRAGLAFILVA 131 (132)
T ss_pred CCCCChHHHHHHHHHcCCCChhheEEEcCCC-cccHHHHHHCCCeEEEee
Confidence 3699999999999999 599999999999 6 899999999999999985
No 37
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.64 E-value=4.7e-15 Score=118.36 Aligned_cols=50 Identities=30% Similarity=0.438 Sum_probs=47.0
Q ss_pred ccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccC
Q 022007 222 VVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSG 272 (304)
Q Consensus 222 ~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G 272 (304)
..+||+|++|+.+++++++++++|+||||+ ..|+++|+++||+++||..|
T Consensus 98 ~~~KP~~~~~~~~~~~~~~~~~e~i~IGDs-~~Di~~A~~~Gi~~v~i~~~ 147 (147)
T TIGR01656 98 SCRKPKPGLILEALKRLGVDASRSLVVGDR-LRDLQAARNAGLAAVLLVDG 147 (147)
T ss_pred CCCCCCHHHHHHHHHHcCCChHHEEEEcCC-HHHHHHHHHCCCCEEEecCC
Confidence 347999999999999999999999999999 99999999999999999765
No 38
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.63 E-value=1e-16 Score=136.67 Aligned_cols=123 Identities=13% Similarity=0.042 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHcCCCceEEEecCCCccCCCCCccccChHHHHHHHH-HhhCCCCcccCCCcHHHHHHHHHHcCCCCCcE
Q 022007 167 YYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMC-ASTEKEPIVVGKPSTFMMEILSKKFQIASSRM 245 (304)
Q Consensus 167 ~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~-~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~~ 245 (304)
|+++.+.++.|+ -...++||...... ...+...++..+|+ .+++.+....+||+|++|..+++++|++|++|
T Consensus 90 ~~gv~~~L~~L~---~~~~ivTn~~~~~~----~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~ 162 (221)
T PRK10563 90 IAGANALLESIT---VPMCVVSNGPVSKM----QHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENC 162 (221)
T ss_pred CCCHHHHHHHcC---CCEEEEeCCcHHHH----HHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHe
Confidence 667777777763 34678899765221 11222334666775 46666667789999999999999999999999
Q ss_pred EEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhhh
Q 022007 246 CMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELLG 303 (304)
Q Consensus 246 ~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l~ 303 (304)
+||||+ ..||++|+++||+++++.++.... ... ..++.+++++.|+.+++.
T Consensus 163 l~igDs-~~di~aA~~aG~~~i~~~~~~~~~-~~~-----~~~~~~~~~~~~l~~~~~ 213 (221)
T PRK10563 163 ILVDDS-SAGAQSGIAAGMEVFYFCADPHNK-PID-----HPLVTTFTDLAQLPELWK 213 (221)
T ss_pred EEEeCc-HhhHHHHHHCCCEEEEECCCCCCc-chh-----hhhhHHHHHHHHHHHHHH
Confidence 999999 799999999999999997764432 222 245667899999887664
No 39
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.61 E-value=1.1e-14 Score=117.72 Aligned_cols=54 Identities=26% Similarity=0.335 Sum_probs=49.8
Q ss_pred cccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCC
Q 022007 221 IVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTT 275 (304)
Q Consensus 221 ~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~ 275 (304)
....||+|++|+.+++++++++++++||||+ .+|+++|+++||++++|.+|.-.
T Consensus 99 ~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~-~~Di~~A~~aGi~~i~~~~~~~~ 152 (161)
T TIGR01261 99 CDCRKPKIKLLEPYLKKNLIDKARSYVIGDR-ETDMQLAENLGIRGIQYDEEELN 152 (161)
T ss_pred CCCCCCCHHHHHHHHHHcCCCHHHeEEEeCC-HHHHHHHHHCCCeEEEEChhhcC
Confidence 4568999999999999999999999999999 89999999999999999887543
No 40
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.61 E-value=1.5e-14 Score=127.19 Aligned_cols=68 Identities=16% Similarity=0.135 Sum_probs=56.5
Q ss_pred CcccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHH
Q 022007 220 PIVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSD 297 (304)
Q Consensus 220 ~~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~e 297 (304)
....+-.++.+++.+++++|++++++++|||+ .||++|++.+| ++|+||++. ++++. .+++++++..+
T Consensus 193 i~~~~~~K~~~l~~l~~~~gi~~~e~i~~GD~-~NDi~m~~~ag---~~vamgna~-~~lk~-----~Ad~v~~~n~~ 260 (272)
T PRK10530 193 IARKGNSKGKRLTQWVEAQGWSMKNVVAFGDN-FNDISMLEAAG---LGVAMGNAD-DAVKA-----RADLVIGDNTT 260 (272)
T ss_pred EecCCCChHHHHHHHHHHcCCCHHHeEEeCCC-hhhHHHHHhcC---ceEEecCch-HHHHH-----hCCEEEecCCC
Confidence 34445556889999999999999999999999 99999999999 789999875 45554 68999876543
No 41
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.61 E-value=1.4e-15 Score=133.26 Aligned_cols=125 Identities=14% Similarity=0.142 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.|+++.+.++.|+.+ |++ .|+||....... ......++..+|+.+++.+.. +|+++.|+.++++++++|++
T Consensus 143 l~pg~~e~L~~L~~~-gi~laIvSn~~~~~~~----~~L~~~gl~~~F~~vi~~~~~---~~k~~~~~~~l~~~~~~p~~ 214 (273)
T PRK13225 143 LFPGVADLLAQLRSR-SLCLGILSSNSRQNIE----AFLQRQGLRSLFSVVQAGTPI---LSKRRALSQLVAREGWQPAA 214 (273)
T ss_pred cCCCHHHHHHHHHHC-CCeEEEEeCCCHHHHH----HHHHHcCChhheEEEEecCCC---CCCHHHHHHHHHHhCcChhH
Confidence 478899999999877 654 778997763221 111222244566666555543 34578999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhhh
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELLG 303 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l~ 303 (304)
|+||||+ .+|+++|+++||++++|.+|....+++.. ..|+++++++.+|.+++.
T Consensus 215 ~l~IGDs-~~Di~aA~~AG~~~I~v~~g~~~~~~l~~----~~ad~~i~~~~eL~~~~~ 268 (273)
T PRK13225 215 VMYVGDE-TRDVEAARQVGLIAVAVTWGFNDRQSLVA----ACPDWLLETPSDLLQAVT 268 (273)
T ss_pred EEEECCC-HHHHHHHHHCCCeEEEEecCCCCHHHHHH----CCCCEEECCHHHHHHHHH
Confidence 9999999 89999999999999999999877655543 479999999999988764
No 42
>PRK09449 dUMP phosphatase; Provisional
Probab=99.61 E-value=1.9e-15 Score=129.12 Aligned_cols=127 Identities=24% Similarity=0.178 Sum_probs=98.1
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCC-CCc
Q 022007 166 NYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIA-SSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~-~~~ 244 (304)
.|+++.+.++.|+.. ....++||...... .......++..+|+.+++++.....||+|++|..+++++|+. +++
T Consensus 96 ~~~g~~~~L~~L~~~-~~~~i~Tn~~~~~~----~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~ 170 (224)
T PRK09449 96 PLPGAVELLNALRGK-VKMGIITNGFTELQ----QVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSR 170 (224)
T ss_pred cCccHHHHHHHHHhC-CeEEEEeCCcHHHH----HHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCccc
Confidence 478899999999842 34578899765221 112223346678888888888889999999999999999985 479
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhhh
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELLG 303 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l~ 303 (304)
|+||||++.+|+++|+++||+++++.++... ... ...|+++++++.||.++++
T Consensus 171 ~~~vgD~~~~Di~~A~~aG~~~i~~~~~~~~--~~~----~~~~~~~i~~~~el~~~l~ 223 (224)
T PRK09449 171 VLMVGDNLHSDILGGINAGIDTCWLNAHGRE--QPE----GIAPTYQVSSLSELEQLLC 223 (224)
T ss_pred EEEEcCCcHHHHHHHHHCCCcEEEECCCCCC--CCC----CCCCeEEECCHHHHHHHHh
Confidence 9999999447999999999999999864321 111 1368999999999998875
No 43
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.60 E-value=2e-15 Score=128.73 Aligned_cols=126 Identities=19% Similarity=0.207 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHc-CCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKF-QIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~l-g~~~~~ 244 (304)
.++++.+.++.++++ ...+++||...... .......++..+|+.+++.+.....||+|++|+.+++++ |++|++
T Consensus 98 ~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~----~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~ 172 (224)
T TIGR02254 98 LLPGAFELMENLQQK-FRLYIVTNGVRETQ----YKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEE 172 (224)
T ss_pred eCccHHHHHHHHHhc-CcEEEEeCCchHHH----HHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchh
Confidence 467888999999886 66788999765221 112222335677888888888889999999999999999 999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhh
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELL 302 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l 302 (304)
++||||++.+|+++|+++||+++++.+|..... . ...|+++++++.||.++|
T Consensus 173 ~v~igD~~~~di~~A~~~G~~~i~~~~~~~~~~--~----~~~~~~~~~~~~el~~~~ 224 (224)
T TIGR02254 173 VLMIGDSLTADIKGGQNAGLDTCWMNPDMHPNP--D----DIIPTYEIRSLEELYEIL 224 (224)
T ss_pred eEEECCCcHHHHHHHHHCCCcEEEECCCCCCCC--C----CCCCceEECCHHHHHhhC
Confidence 999999944899999999999999998754421 1 146899999999998765
No 44
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.59 E-value=2.3e-15 Score=128.19 Aligned_cols=129 Identities=12% Similarity=0.121 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
..+++.+.++.|+.+ +.. .++||..+.. ....+..-++..+|+.++.++.+..+||+|++|..++++||++|++
T Consensus 87 ~~pGv~~~l~~L~~~-~i~~avaS~s~~~~----~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~ 161 (221)
T COG0637 87 PIPGVVELLEQLKAR-GIPLAVASSSPRRA----AERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEE 161 (221)
T ss_pred CCccHHHHHHHHHhc-CCcEEEecCChHHH----HHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChHH
Confidence 467888999999887 554 5667755411 1223333446788999998899999999999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhh
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELL 302 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l 302 (304)
|+.|+|+ .+.|++|++|||++++|..+.... .... ......+.+..++.++...+
T Consensus 162 CvviEDs-~~Gi~Aa~aAGm~vv~v~~~~~~~-~~~~-~~~~~~~~~~~~~~~l~~~~ 216 (221)
T COG0637 162 CVVVEDS-PAGIQAAKAAGMRVVGVPAGHDRP-HLDP-LDAHGADTVLLDLAELPALL 216 (221)
T ss_pred eEEEecc-hhHHHHHHHCCCEEEEecCCCCcc-ccch-hhhhhcchhhccHHHHHHHH
Confidence 9999999 899999999999999998854421 1110 01236677788888877654
No 45
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.59 E-value=2.5e-15 Score=126.38 Aligned_cols=97 Identities=20% Similarity=0.139 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHHHcCCCc-eEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGC-LFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~-~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.++++.+++..|+++ |. .+++||.+... .......++..+|+.+++.+....+||+|++|+.+++++|++|++
T Consensus 106 ~~~g~~~~l~~L~~~-g~~~~i~Sn~~~~~-----~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~ 179 (203)
T TIGR02252 106 VYPDAIKLLKDLRER-GLILGVISNFDSRL-----RGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPEE 179 (203)
T ss_pred eCcCHHHHHHHHHHC-CCEEEEEeCCchhH-----HHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCChhH
Confidence 478899999999887 65 47889976521 112222335677888888888889999999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEE
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLL 268 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~ 268 (304)
++||||++.+||++|+++||++||
T Consensus 180 ~~~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 180 ALHIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred EEEECCCchHHHHHHHHcCCeeeC
Confidence 999999955899999999999985
No 46
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.59 E-value=1.3e-14 Score=113.82 Aligned_cols=48 Identities=35% Similarity=0.474 Sum_probs=46.2
Q ss_pred cCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEc
Q 022007 223 VGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVL 270 (304)
Q Consensus 223 ~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~ 270 (304)
.+||.+..|+.|++.+++++++|+||||.+.|||.+++.+||+||+|.
T Consensus 91 A~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~ 138 (175)
T COG2179 91 AKKPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILVE 138 (175)
T ss_pred ccCccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEEE
Confidence 379999999999999999999999999999999999999999999993
No 47
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.58 E-value=1.3e-15 Score=126.43 Aligned_cols=97 Identities=10% Similarity=0.004 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHcCCCceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCcEE
Q 022007 167 YYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRMC 246 (304)
Q Consensus 167 ~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~~~ 246 (304)
++. .+.+..|++. ....++||...... ...+...++..+|+.+++.+.+..+||+|++|+.+++++|++|++++
T Consensus 90 ~~~-~e~L~~L~~~-~~l~I~T~~~~~~~----~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l 163 (188)
T PRK10725 90 LPL-IEVVKAWHGR-RPMAVGTGSESAIA----EALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCV 163 (188)
T ss_pred ccH-HHHHHHHHhC-CCEEEEcCCchHHH----HHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeE
Confidence 443 3667777654 45678899765221 12222334667888899999888999999999999999999999999
Q ss_pred EEcCCchhhHHHHHHcCCeEEEEc
Q 022007 247 MVGDRLDTDILFGQNAGCKTLLVL 270 (304)
Q Consensus 247 ~IGD~~~~Di~~a~~aG~~ti~V~ 270 (304)
+|||+ .+|+++|+++|+++|+|.
T Consensus 164 ~igDs-~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 164 VFEDA-DFGIQAARAAGMDAVDVR 186 (188)
T ss_pred EEecc-HhhHHHHHHCCCEEEeec
Confidence 99999 999999999999999984
No 48
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.58 E-value=6e-14 Score=113.66 Aligned_cols=75 Identities=29% Similarity=0.390 Sum_probs=64.1
Q ss_pred cccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHH
Q 022007 221 IVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILE 300 (304)
Q Consensus 221 ~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~ 300 (304)
+.++||++.+++.+++++++++++.+||||+ .+|+++|.++|++.+.+.+|......-. ...+++.+++.++..
T Consensus 101 c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~-~~Dlq~a~n~gi~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 174 (181)
T COG0241 101 CDCRKPKPGMLLSALKEYNIDLSRSYVVGDR-LTDLQAAENAGIKGVLVLTGIGVTTDGA-----GRAKWVFDSLAEFAN 174 (181)
T ss_pred CcccCCChHHHHHHHHHhCCCccceEEecCc-HHHHHHHHHCCCCceEEEcCcccccccc-----cccccccccHHHHHH
Confidence 5679999999999999999999999999999 8999999999999999999877643222 256778888888774
Q ss_pred h
Q 022007 301 L 301 (304)
Q Consensus 301 ~ 301 (304)
+
T Consensus 175 ~ 175 (181)
T COG0241 175 L 175 (181)
T ss_pred H
Confidence 3
No 49
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.56 E-value=1.8e-14 Score=135.83 Aligned_cols=123 Identities=18% Similarity=0.182 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHHHcCCCc-eEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGC-LFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~-~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.|+++.+.++.|+++ |. ..++||....... ......++..+|+.+++.+.+. .||+|++|..++++++ |++
T Consensus 331 l~pG~~e~L~~Lk~~-g~~l~IvS~~~~~~~~----~~l~~~~l~~~f~~i~~~d~v~-~~~kP~~~~~al~~l~--~~~ 402 (459)
T PRK06698 331 LYPNVKEIFTYIKEN-NCSIYIASNGLTEYLR----AIVSYYDLDQWVTETFSIEQIN-SLNKSDLVKSILNKYD--IKE 402 (459)
T ss_pred cCCCHHHHHHHHHHC-CCeEEEEeCCchHHHH----HHHHHCCcHhhcceeEecCCCC-CCCCcHHHHHHHHhcC--cce
Confidence 478999999999987 55 5889997773321 2222334567788888877653 4788899999999865 689
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhhh
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELLG 303 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l~ 303 (304)
|+||||+ .+|+++|+++||.+++|.+|....++. ..|+++++++.|+.+++.
T Consensus 403 ~v~VGDs-~~Di~aAk~AG~~~I~v~~~~~~~~~~------~~~d~~i~~l~el~~~l~ 454 (459)
T PRK06698 403 AAVVGDR-LSDINAAKDNGLIAIGCNFDFAQEDEL------AQADIVIDDLLELKGILS 454 (459)
T ss_pred EEEEeCC-HHHHHHHHHCCCeEEEEeCCCCccccc------CCCCEEeCCHHHHHHHHH
Confidence 9999999 799999999999999999987654433 269999999999988764
No 50
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.56 E-value=2.4e-15 Score=128.35 Aligned_cols=124 Identities=9% Similarity=0.007 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHHHcCCCc-eEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGC-LFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~-~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.|+++.+.+..|+++ |. .+++||...... ..+....++..+|+.+++.+....+||+|++|+.+++++|++|++
T Consensus 93 ~~~g~~~~l~~l~~~-g~~~~i~S~~~~~~~----~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~ 167 (222)
T PRK10826 93 LLPGVREALALCKAQ-GLKIGLASASPLHML----EAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLT 167 (222)
T ss_pred CCCCHHHHHHHHHHC-CCeEEEEeCCcHHHH----HHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 578999999999987 65 477888665221 122222346677888888888889999999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHH
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILE 300 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~ 300 (304)
|+||||+ .+|+++|+++|+++++|.++....+... ..+++++.++.|+..
T Consensus 168 ~~~igDs-~~Di~aA~~aG~~~i~v~~~~~~~~~~~-----~~~~~~~~~~~dl~~ 217 (222)
T PRK10826 168 CVALEDS-FNGMIAAKAARMRSIVVPAPEQQNDPRW-----ALADVKLESLTELTA 217 (222)
T ss_pred eEEEcCC-hhhHHHHHHcCCEEEEecCCccCchhhh-----hhhheeccCHHHHhh
Confidence 9999999 7999999999999999988765432222 258999999999875
No 51
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.56 E-value=3.2e-14 Score=119.97 Aligned_cols=102 Identities=20% Similarity=0.163 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHcCCCc-eEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCcEE
Q 022007 168 YKLQYGTLCIRENPGC-LFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRMC 246 (304)
Q Consensus 168 ~~~~~~l~~l~~~~~~-~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~~~ 246 (304)
+.+.++++.+++. |. ..+.||-|.... ......++..+|+.++.+-.....||+|.+|+.++++++++|++|+
T Consensus 116 ~~~~~~lq~lR~~-g~~l~iisN~d~r~~-----~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~v 189 (237)
T KOG3085|consen 116 DGMQELLQKLRKK-GTILGIISNFDDRLR-----LLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEECV 189 (237)
T ss_pred cHHHHHHHHHHhC-CeEEEEecCCcHHHH-----HHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHeE
Confidence 4566888889887 63 467888777332 2222333668999999988899999999999999999999999999
Q ss_pred EEcCCchhhHHHHHHcCCeEEEEccCCCC
Q 022007 247 MVGDRLDTDILFGQNAGCKTLLVLSGVTT 275 (304)
Q Consensus 247 ~IGD~~~~Di~~a~~aG~~ti~V~~G~~~ 275 (304)
+|||++.+|+++|+++||++++|......
T Consensus 190 hIgD~l~nD~~gA~~~G~~ailv~~~~~~ 218 (237)
T KOG3085|consen 190 HIGDLLENDYEGARNLGWHAILVDNSITA 218 (237)
T ss_pred EecCccccccHhHHHcCCEEEEEccccch
Confidence 99999999999999999999999865443
No 52
>PLN02811 hydrolase
Probab=99.56 E-value=4.3e-15 Score=126.67 Aligned_cols=123 Identities=15% Similarity=0.150 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHHcCCCc-eEEEecCCCccCCCCCccccChHHHHHHHHHhhCCC--CcccCCCcHHHHHHHHHHcC---
Q 022007 166 NYYKLQYGTLCIRENPGC-LFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKE--PIVVGKPSTFMMEILSKKFQ--- 239 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~-~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~--~~~~gKP~~~~~~~al~~lg--- 239 (304)
.|+++.+.++.|+++ |. ..++||....... ........+..+|+.+++.+ .+..+||+|++|..++++++
T Consensus 79 l~~gv~e~l~~L~~~-g~~~~i~S~~~~~~~~---~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~ 154 (220)
T PLN02811 79 LMPGAERLVRHLHAK-GIPIAIATGSHKRHFD---LKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGP 154 (220)
T ss_pred CCccHHHHHHHHHHC-CCcEEEEeCCchhhHH---HHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCC
Confidence 478999999999987 55 4788987652111 11222344667788888888 77889999999999999997
Q ss_pred CCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHH
Q 022007 240 IASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDIL 299 (304)
Q Consensus 240 ~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~ 299 (304)
++|++|+||||+ ..|+++|+++||++|+|.+|....... ..|+++++++.|+.
T Consensus 155 ~~~~~~v~IgDs-~~di~aA~~aG~~~i~v~~~~~~~~~~------~~~d~vi~~~~e~~ 207 (220)
T PLN02811 155 VDPGKVLVFEDA-PSGVEAAKNAGMSVVMVPDPRLDKSYC------KGADQVLSSLLDFK 207 (220)
T ss_pred CCccceEEEecc-HhhHHHHHHCCCeEEEEeCCCCcHhhh------hchhhHhcCHhhCC
Confidence 999999999999 899999999999999999987554322 26899999998764
No 53
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.55 E-value=5.1e-15 Score=126.49 Aligned_cols=128 Identities=20% Similarity=0.276 Sum_probs=100.9
Q ss_pred CHHHHHHHHHHHHcCCCc-eEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGC-LFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~-~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.++++.+.+..+++. |. .+++||....... ......++..+|+.+++.+.....||+|++|+.+++++++++++
T Consensus 94 ~~~g~~~~l~~l~~~-g~~~~i~S~~~~~~~~----~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 168 (226)
T PRK13222 94 LYPGVKETLAALKAA-GYPLAVVTNKPTPFVA----PLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEE 168 (226)
T ss_pred cCCCHHHHHHHHHHC-CCeEEEEeCCCHHHHH----HHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCCChhh
Confidence 477889999999877 55 5788987652211 11111123445667778788888999999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhhh
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELLG 303 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l~ 303 (304)
+++|||+ .+|+++|+++|+++++|.+|.....++.. ..|+++++++.++..+|.
T Consensus 169 ~i~igD~-~~Di~~a~~~g~~~i~v~~g~~~~~~~~~----~~~~~~i~~~~~l~~~l~ 222 (226)
T PRK13222 169 MLFVGDS-RNDIQAARAAGCPSVGVTYGYNYGEPIAL----SEPDVVIDHFAELLPLLG 222 (226)
T ss_pred eEEECCC-HHHHHHHHHCCCcEEEECcCCCCccchhh----cCCCEEECCHHHHHHHHH
Confidence 9999999 89999999999999999999765444432 479999999999998764
No 54
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.55 E-value=2.4e-14 Score=121.19 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.|+++.+.++.|+++ |.+ +++||....... . ........+..+|+.+++.+....+||+|++|+.+++++|++|++
T Consensus 95 ~~~~~~~~L~~L~~~-g~~l~i~Sn~~~~~~~-~-~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~ 171 (211)
T TIGR02247 95 LRPSMMAAIKTLRAK-GFKTACITNNFPTDHS-A-EEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPEE 171 (211)
T ss_pred cChhHHHHHHHHHHC-CCeEEEEeCCCCccch-h-hhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHHH
Confidence 478899999999987 665 778986542211 1 111112236677888888888888999999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEccCCC
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVLSGVT 274 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~ 274 (304)
|+||||+ ..|+.+|+++||++++|.++..
T Consensus 172 ~l~i~D~-~~di~aA~~aG~~~i~v~~~~~ 200 (211)
T TIGR02247 172 CVFLDDL-GSNLKPAAALGITTIKVSDEEQ 200 (211)
T ss_pred eEEEcCC-HHHHHHHHHcCCEEEEECCHHH
Confidence 9999999 9999999999999999977543
No 55
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.54 E-value=1.3e-13 Score=118.18 Aligned_cols=210 Identities=14% Similarity=0.148 Sum_probs=117.3
Q ss_pred ccCEEEEeE--EEEcCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHHHHHHHH
Q 022007 24 SVDAFLFDC--VIWKGDK-LIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFAAAMYLK 100 (304)
Q Consensus 24 ~~k~i~fDi--tL~~~~~-~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~ 100 (304)
.+|+|+||+ ||++.++ +.|.+.++|++|+++|++++++|+ |+...+.+.++.+|++.. ++... .+.-|..
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTG---R~~~~~~~~~~~l~~~~~---~i~~n-Ga~i~~~ 74 (230)
T PRK01158 2 KIKAIAIDIDGTITDKDRRLSLKAVEAIRKAEKLGIPVILATG---NVLCFARAAAKLIGTSGP---VIAEN-GGVISVG 74 (230)
T ss_pred ceeEEEEecCCCcCCCCCccCHHHHHHHHHHHHCCCEEEEEcC---CchHHHHHHHHHhCCCCc---EEEec-CeEEEEc
Confidence 379999999 9998776 556899999999999999999999 999988888888888631 11110 0000000
Q ss_pred hCCCCCCCeEEEEcChhH---HHHHHHcCCcccCCCCCcchhhhhccccccccCCCccEEEEecCCCCCHHHHHHHHHHH
Q 022007 101 VNNFPQENKVYVIGGEGI---LEELRQAGYTGLGGPEDGEKRVQLKSNCLFEHDKNVGAVVVGLDPHINYYKLQYGTLCI 177 (304)
Q Consensus 101 ~~~~~~~~~v~~~g~~~~---~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~l 177 (304)
.. ...++....+.. .+.+.+........ . ...........+.. ........+. ..+
T Consensus 75 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~--~~~~~~~~~~~~~~--~~~~~~~~~~---~~l 133 (230)
T PRK01158 75 FD----GKRIFLGDIEECEKAYSELKKRFPEASTS----------L--TKLDPDYRKTEVAL--RRTVPVEEVR---ELL 133 (230)
T ss_pred CC----CCEEEEcchHHHHHHHHHHHHhcccccee----------e--ecCCcccccceeee--cccccHHHHH---HHH
Confidence 00 011111111111 11221111000000 0 00000000000100 0111112222 222
Q ss_pred HcCCCceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHH
Q 022007 178 RENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDIL 257 (304)
Q Consensus 178 ~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~ 257 (304)
+.. +..+.++.... ..+....+..++..++.+++++|++++++++|||+ .||+.
T Consensus 134 ~~~-~~~~~~~~~~~------------------------~~ei~~~~~~Kg~al~~l~~~~~i~~~~~i~~GD~-~NDi~ 187 (230)
T PRK01158 134 EEL-GLDLEIVDSGF------------------------AIHIKSPGVNKGTGLKKLAELMGIDPEEVAAIGDS-ENDLE 187 (230)
T ss_pred HHc-CCcEEEEecce------------------------EEEEeeCCCChHHHHHHHHHHhCCCHHHEEEECCc-hhhHH
Confidence 221 11111110000 01334456667999999999999999999999999 99999
Q ss_pred HHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHH
Q 022007 258 FGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVS 296 (304)
Q Consensus 258 ~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~ 296 (304)
|++.+| +.|++|++.+ .++. .+++++.+..
T Consensus 188 m~~~ag---~~vam~Na~~-~vk~-----~a~~v~~~n~ 217 (230)
T PRK01158 188 MFEVAG---FGVAVANADE-ELKE-----AADYVTEKSY 217 (230)
T ss_pred HHHhcC---ceEEecCccH-HHHH-----hcceEecCCC
Confidence 999999 8889999875 4544 5889887643
No 56
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.51 E-value=9.2e-15 Score=124.89 Aligned_cols=105 Identities=10% Similarity=-0.037 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHcCCCc-eEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGC-LFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~-~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.|+++.+.+..|+++ |. .+++||....... ......++..+|+.+++.+....+||+|++|+.+++++|++|++
T Consensus 94 ~~~g~~e~L~~Lk~~-g~~~~i~Tn~~~~~~~----~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~ 168 (224)
T PRK14988 94 LREDTVPFLEALKAS-GKRRILLTNAHPHNLA----VKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAER 168 (224)
T ss_pred cCCCHHHHHHHHHhC-CCeEEEEeCcCHHHHH----HHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHH
Confidence 478899999999987 65 5888996552211 11222336678888888888888999999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeE-EEEccCCCCc
Q 022007 245 MCMVGDRLDTDILFGQNAGCKT-LLVLSGVTTQ 276 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~t-i~V~~G~~~~ 276 (304)
|+||||+ ..|+++|+++||++ ++|.++.+..
T Consensus 169 ~l~igDs-~~di~aA~~aG~~~~~~v~~~~~~~ 200 (224)
T PRK14988 169 TLFIDDS-EPILDAAAQFGIRYCLGVTNPDSGI 200 (224)
T ss_pred EEEEcCC-HHHHHHHHHcCCeEEEEEeCCCCCc
Confidence 9999999 79999999999985 6788876543
No 57
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.50 E-value=2.6e-14 Score=118.31 Aligned_cols=96 Identities=9% Similarity=0.087 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.|+++.+.++.|+++ |.+ +++||... . .......++..+|+.+++.+.....||+|++|+.++++++++|++
T Consensus 89 ~~~g~~~~l~~l~~~-g~~i~i~S~~~~-~-----~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 161 (185)
T TIGR02009 89 VLPGIENFLKRLKKK-GIAVGLGSSSKN-A-----DRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVSPNE 161 (185)
T ss_pred CCcCHHHHHHHHHHc-CCeEEEEeCchh-H-----HHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHH
Confidence 478899999999887 665 66787621 1 122223346677888888888888999999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEE
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLV 269 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V 269 (304)
++||||+ .+|+++|+++||++++|
T Consensus 162 ~v~IgD~-~~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 162 CVVFEDA-LAGVQAARAAGMFAVAV 185 (185)
T ss_pred eEEEeCc-HhhHHHHHHCCCeEeeC
Confidence 9999999 89999999999999976
No 58
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.50 E-value=3.8e-13 Score=109.29 Aligned_cols=46 Identities=37% Similarity=0.485 Sum_probs=41.8
Q ss_pred cCCCcHHHHHHHHHHcC--CCCCcEEEEcCCc-------hhhHHHHHHcCCeEEE
Q 022007 223 VGKPSTFMMEILSKKFQ--IASSRMCMVGDRL-------DTDILFGQNAGCKTLL 268 (304)
Q Consensus 223 ~gKP~~~~~~~al~~lg--~~~~~~~~IGD~~-------~~Di~~a~~aG~~ti~ 268 (304)
.+||+|++++.+++++| +++++++||||+. .+|+++|+++|+++++
T Consensus 106 ~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~ 160 (166)
T TIGR01664 106 YRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFKY 160 (166)
T ss_pred CCCCccHHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcCC
Confidence 47999999999999999 9999999999993 3699999999998865
No 59
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.50 E-value=1.6e-13 Score=120.50 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=56.3
Q ss_pred cccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHH
Q 022007 221 IVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVS 296 (304)
Q Consensus 221 ~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~ 296 (304)
...+-.+..+++.+++++|++++++++|||+ .||++|.+.+| +.|+||++.++ ++. .+++|+.+..
T Consensus 191 ~~~gvsKg~al~~l~~~~gi~~~~v~afGD~-~NDi~Ml~~ag---~~vAm~NA~~~-vK~-----~A~~vt~~n~ 256 (270)
T PRK10513 191 LDKRVNKGTGVKSLAEHLGIKPEEVMAIGDQ-ENDIAMIEYAG---VGVAMGNAIPS-VKE-----VAQFVTKSNL 256 (270)
T ss_pred eCCCCChHHHHHHHHHHhCCCHHHEEEECCc-hhhHHHHHhCC---ceEEecCccHH-HHH-----hcCeeccCCC
Confidence 4445556899999999999999999999999 99999999999 89999998754 554 6899987643
No 60
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.50 E-value=1.2e-12 Score=115.10 Aligned_cols=58 Identities=12% Similarity=0.148 Sum_probs=51.7
Q ss_pred hhccCEEEEeE--EEEcCCccC-ccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 22 FDSVDAFLFDC--VIWKGDKLI-DGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 22 ~~~~k~i~fDi--tL~~~~~~~-~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
+..+++|++|+ ||++.++.+ +.++++|++|+++|++++++|+ |+...+...++++|++
T Consensus 4 ~~~~~lI~~DlDGTLL~~~~~i~~~~~~ai~~l~~~Gi~~viaTG---R~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 4 LQDPLLIFTDLDGTLLDSHTYDWQPAAPWLTRLREAQVPVILCSS---KTAAEMLPLQQTLGLQ 64 (271)
T ss_pred cCCCeEEEEeCccCCcCCCCcCcHHHHHHHHHHHHcCCeEEEEcC---CCHHHHHHHHHHhCCC
Confidence 35789999999 999877654 6789999999999999999999 9999999999999985
No 61
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.48 E-value=2.4e-13 Score=119.07 Aligned_cols=68 Identities=25% Similarity=0.318 Sum_probs=55.8
Q ss_pred CCcccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHH
Q 022007 219 EPIVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVS 296 (304)
Q Consensus 219 ~~~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~ 296 (304)
+....+.-+..+++.+++++|++++++++|||+ .||++|.+.+| .+|+||++. ++++. .+++++.+..
T Consensus 182 ei~~~g~~K~~al~~l~~~lgi~~~~v~afGD~-~ND~~Ml~~ag---~gvam~Na~-~~~k~-----~A~~vt~~n~ 249 (264)
T COG0561 182 DITPKGVSKGYALQRLAKLLGIKLEEVIAFGDS-TNDIEMLEVAG---LGVAMGNAD-EELKE-----LADYVTTSND 249 (264)
T ss_pred EEecCCCchHHHHHHHHHHhCCCHHHeEEeCCc-cccHHHHHhcC---eeeeccCCC-HHHHh-----hCCcccCCcc
Confidence 445566667999999999999999999999999 99999999999 999999995 44554 4556655543
No 62
>PRK10976 putative hydrolase; Provisional
Probab=99.48 E-value=3.5e-13 Score=118.15 Aligned_cols=68 Identities=21% Similarity=0.164 Sum_probs=55.6
Q ss_pred CcccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCc--EEECCHHH
Q 022007 220 PIVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPD--YYTNQVSD 297 (304)
Q Consensus 220 ~~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd--~v~~~l~e 297 (304)
....+-.+..+++.+++++|++++++++|||+ .||++|.+.+| +.|+||++.++ ++. .++ +|+.+.+|
T Consensus 184 I~~~gvsKg~al~~l~~~lgi~~~~viafGD~-~NDi~Ml~~ag---~~vAm~NA~~~-vK~-----~A~~~~v~~~n~e 253 (266)
T PRK10976 184 VMAGGVSKGHALEAVAKKLGYSLKDCIAFGDG-MNDAEMLSMAG---KGCIMGNAHQR-LKD-----LLPELEVIGSNAD 253 (266)
T ss_pred EEcCCCChHHHHHHHHHHcCCCHHHeEEEcCC-cccHHHHHHcC---CCeeecCCcHH-HHH-----hCCCCeecccCch
Confidence 34455556999999999999999999999999 99999999999 89999998754 443 444 77766443
No 63
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.47 E-value=4.3e-13 Score=109.60 Aligned_cols=103 Identities=21% Similarity=0.198 Sum_probs=78.8
Q ss_pred CCCCHHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHHHHhhCCCC-cccCCCcHHHHHHHHHHcCC
Q 022007 163 PHINYYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEP-IVVGKPSTFMMEILSKKFQI 240 (304)
Q Consensus 163 ~~~~~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-~~~gKP~~~~~~~al~~lg~ 240 (304)
....|+++.+.++.|+++ |.+ +++||.+.. .....+...++... ....||+|++|..+++++++
T Consensus 41 ~~~~~pgv~e~L~~Lk~~-g~~l~I~Sn~~~~-------------~~~~~~~~~~gl~~~~~~~KP~p~~~~~~l~~~~~ 106 (170)
T TIGR01668 41 HNEAYPALRDWIEELKAA-GRKLLIVSNNAGE-------------QRAKAVEKALGIPVLPHAVKPPGCAFRRAHPEMGL 106 (170)
T ss_pred CCCcChhHHHHHHHHHHc-CCEEEEEeCCchH-------------HHHHHHHHHcCCEEEcCCCCCChHHHHHHHHHcCC
Confidence 335688999999999887 555 788997620 11222222333332 23579999999999999999
Q ss_pred CCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCcccc
Q 022007 241 ASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTL 279 (304)
Q Consensus 241 ~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~ 279 (304)
++++++||||++.+|+.+|+++||++++|.+|....+.+
T Consensus 107 ~~~~~l~IGDs~~~Di~aA~~aGi~~i~v~~g~~~~~~~ 145 (170)
T TIGR01668 107 TSEQVAVVGDRLFTDVMGGNRNGSYTILVEPLVHPDQWF 145 (170)
T ss_pred CHHHEEEECCcchHHHHHHHHcCCeEEEEccCcCCcccc
Confidence 999999999995489999999999999999998765543
No 64
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.47 E-value=4.1e-13 Score=114.69 Aligned_cols=69 Identities=20% Similarity=0.248 Sum_probs=57.7
Q ss_pred CCcccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHH
Q 022007 219 EPIVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSD 297 (304)
Q Consensus 219 ~~~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~e 297 (304)
+....+.++..+++.+++++|++++++++|||+ .||+.|++.+| +.|++|++.+ +++. .+++|+.+..+
T Consensus 142 ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~-~NDi~m~~~ag---~~vam~Na~~-~~k~-----~A~~vt~~~~~ 210 (225)
T TIGR01482 142 HILPQGVNKGVAVKKLKEKLGIKPGETLVCGDS-ENDIDLFEVPG---FGVAVANAQP-ELKE-----WADYVTESPYG 210 (225)
T ss_pred EEeeCCCCHHHHHHHHHHHhCCCHHHEEEECCC-HhhHHHHHhcC---ceEEcCChhH-HHHH-----hcCeecCCCCC
Confidence 334556777999999999999999999999999 99999999999 8999999875 4543 68888876443
No 65
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.46 E-value=1.4e-12 Score=110.80 Aligned_cols=62 Identities=23% Similarity=0.320 Sum_probs=53.0
Q ss_pred CCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCH
Q 022007 224 GKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQV 295 (304)
Q Consensus 224 gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l 295 (304)
+..+..+++.+++++|++++++++|||+ .+|++|++.+| +.|+++++.+ +++. .+++++.+.
T Consensus 145 ~~~K~~~i~~l~~~~~i~~~~~i~iGDs-~ND~~ml~~ag---~~vam~na~~-~~k~-----~A~~v~~~~ 206 (215)
T TIGR01487 145 GVDKGVGVEKLKELLGIKPEEVAAIGDS-ENDIDLFRVVG---FKVAVANADD-QLKE-----IADYVTSNP 206 (215)
T ss_pred CCChHHHHHHHHHHhCCCHHHEEEECCC-HHHHHHHHhCC---CeEEcCCccH-HHHH-----hCCEEcCCC
Confidence 4455789999999999999999999999 99999999999 8899999864 4554 578888754
No 66
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.45 E-value=6.5e-14 Score=117.34 Aligned_cols=102 Identities=14% Similarity=0.086 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.++++.++++.|+++ |.+ +++||.+..... ......++..+|+.+++.+.+..+||+|++|+.+++++|++|++
T Consensus 93 ~~~~~~~~L~~L~~~-g~~~~i~Sn~~~~~~~----~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~ 167 (198)
T TIGR01428 93 PHPDVPAGLRALKER-GYRLAILSNGSPAMLK----SLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDE 167 (198)
T ss_pred CCCCHHHHHHHHHHC-CCeEEEEeCCCHHHHH----HHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhh
Confidence 477888999999987 664 778997763211 11122235677888998888899999999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEccCC
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVLSGV 273 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~~G~ 273 (304)
++||||+ .+|+.+|+++||+++||..+.
T Consensus 168 ~~~vgD~-~~Di~~A~~~G~~~i~v~r~~ 195 (198)
T TIGR01428 168 VLFVASN-PWDLGGAKKFGFKTAWVNRPG 195 (198)
T ss_pred EEEEeCC-HHHHHHHHHCCCcEEEecCCC
Confidence 9999999 699999999999999997643
No 67
>PLN02887 hydrolase family protein
Probab=99.45 E-value=6.8e-13 Score=126.71 Aligned_cols=63 Identities=11% Similarity=0.205 Sum_probs=55.5
Q ss_pred hHHHhhhccCEEEEeE--EEEcCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 17 NITALFDSVDAFLFDC--VIWKGDK-LIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 17 ~~~~~~~~~k~i~fDi--tL~~~~~-~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
++...-..+|+|+||+ ||++.++ +.+.+++||++|+++|+.++++|+ |+...+.+.++++|++
T Consensus 300 ~~~~~~~~iKLIa~DLDGTLLn~d~~Is~~t~eAI~kl~ekGi~~vIATG---R~~~~i~~~l~~L~l~ 365 (580)
T PLN02887 300 SLRFYKPKFSYIFCDMDGTLLNSKSQISETNAKALKEALSRGVKVVIATG---KARPAVIDILKMVDLA 365 (580)
T ss_pred chhhhccCccEEEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCeEEEEcC---CCHHHHHHHHHHhCcc
Confidence 5666677999999999 9998765 667899999999999999999999 9999998888888864
No 68
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.43 E-value=1.7e-13 Score=114.92 Aligned_cols=107 Identities=13% Similarity=0.049 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHcCCCc-eEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGC-LFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~-~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.|+++.+.++.|+++ |. .+++||....... ........+..+|+.+++.+.+..+||+|++|+.+++++|++|++
T Consensus 85 ~~~g~~e~L~~l~~~-g~~~~i~Sn~~~~~~~---~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~ 160 (199)
T PRK09456 85 LRPEVIAIMHKLREQ-GHRVVVLSNTNRLHTT---FWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAAD 160 (199)
T ss_pred cCHHHHHHHHHHHhC-CCcEEEEcCCchhhHH---HHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhH
Confidence 378999999999887 55 5788997652210 001111245677888888899999999999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEccCCCCcc
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQS 277 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~ 277 (304)
++||||+ ..|+.+|+++||+++++..+..-.+
T Consensus 161 ~l~vgD~-~~di~aA~~aG~~~i~~~~~~~~~~ 192 (199)
T PRK09456 161 AVFFDDN-ADNIEAANALGITSILVTDKQTIPD 192 (199)
T ss_pred eEEeCCC-HHHHHHHHHcCCEEEEecCCccHHH
Confidence 9999999 7999999999999999987655443
No 69
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.43 E-value=8.9e-13 Score=107.33 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=46.5
Q ss_pred cCCCcHHHHHHHHHHc--CCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCC
Q 022007 223 VGKPSTFMMEILSKKF--QIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTT 275 (304)
Q Consensus 223 ~gKP~~~~~~~al~~l--g~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~ 275 (304)
..||.+.+++.+.+.+ |++|++|+||||+ ..|+++|+++|+++++|.+|...
T Consensus 109 ~~kp~~~i~~~~~~~~~~gl~p~e~l~VgDs-~~di~aA~~aGi~~i~v~~g~~~ 162 (174)
T TIGR01685 109 KAKQLEMILQKVNKVDPSVLKPAQILFFDDR-TDNVREVWGYGVTSCYCPSGMDK 162 (174)
T ss_pred hHHHHHHHHHHhhhcccCCCCHHHeEEEcCh-hHhHHHHHHhCCEEEEcCCCccH
Confidence 3577788888888887 8999999999999 89999999999999999998654
No 70
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.42 E-value=6.7e-12 Score=110.43 Aligned_cols=55 Identities=25% Similarity=0.308 Sum_probs=49.8
Q ss_pred cCEEEEeE--EEEcCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 25 VDAFLFDC--VIWKGDK-LIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 25 ~k~i~fDi--tL~~~~~-~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
+|+|+||+ ||++.++ +.+.++++|++|+++|++++++|+ |+...+.+.++++|++
T Consensus 2 ~kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTG---R~~~~~~~~~~~l~~~ 59 (272)
T PRK15126 2 ARLAAFDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFATG---RHVLEMQHILGALSLD 59 (272)
T ss_pred ccEEEEeCCCcCcCCCCcCCHHHHHHHHHHHHCCCEEEEECC---CCHHHHHHHHHHcCCC
Confidence 68999999 9998665 666799999999999999999999 9999999999999886
No 71
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.42 E-value=1.1e-12 Score=134.06 Aligned_cols=73 Identities=16% Similarity=0.280 Sum_probs=64.4
Q ss_pred CcccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHH
Q 022007 220 PIVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDI 298 (304)
Q Consensus 220 ~~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el 298 (304)
.+..+||+|++|..+++++|++|++|+||||+ ..|+++|+++||++|+|.+|.. .+++.. ..|+++++++.++
T Consensus 213 ~~~~~KP~Pe~~~~a~~~lgv~p~e~v~IgDs-~~Di~AA~~aGm~~I~v~~~~~-~~~L~~----~~a~~vi~~l~el 285 (1057)
T PLN02919 213 AFENLKPAPDIFLAAAKILGVPTSECVVIEDA-LAGVQAARAAGMRCIAVTTTLS-EEILKD----AGPSLIRKDIGNI 285 (1057)
T ss_pred ccccCCCCHHHHHHHHHHcCcCcccEEEEcCC-HHHHHHHHHcCCEEEEECCCCC-HHHHhh----CCCCEEECChHHC
Confidence 34458999999999999999999999999999 8999999999999999999864 344543 4899999999986
No 72
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.41 E-value=3.1e-12 Score=99.58 Aligned_cols=50 Identities=28% Similarity=0.366 Sum_probs=45.8
Q ss_pred CCcccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEE
Q 022007 219 EPIVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLV 269 (304)
Q Consensus 219 ~~~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V 269 (304)
.....+||++..++.++++++.+++++++|||+ .+|+++++++|+++++|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igD~-~~d~~~~~~~g~~~i~v 139 (139)
T cd01427 90 GPFDIGKPNPDKLLAALKLLGVDPEEVLMVGDS-LNDIEMAKAAGGLGVAV 139 (139)
T ss_pred cccccCCCCHHHHHHHHHHcCCChhhEEEeCCC-HHHHHHHHHcCCceeeC
Confidence 445668999999999999999999999999999 89999999999999875
No 73
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.41 E-value=3.8e-12 Score=114.65 Aligned_cols=52 Identities=25% Similarity=0.316 Sum_probs=47.7
Q ss_pred cccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCC
Q 022007 221 IVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGV 273 (304)
Q Consensus 221 ~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~ 273 (304)
...+||+|.++..+++.++++|++++||||+ .+|+++|+++||++++|....
T Consensus 100 ~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs-~sDi~aAk~aGi~~I~v~~~~ 151 (354)
T PRK05446 100 CSCRKPKTGLVEEYLAEGAIDLANSYVIGDR-ETDVQLAENMGIKGIRYARET 151 (354)
T ss_pred CCCCCCCHHHHHHHHHHcCCCcccEEEEcCC-HHHHHHHHHCCCeEEEEECCC
Confidence 3468999999999999999999999999999 899999999999999995543
No 74
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.39 E-value=2.7e-12 Score=104.49 Aligned_cols=46 Identities=28% Similarity=0.378 Sum_probs=44.1
Q ss_pred cCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEE
Q 022007 223 VGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLV 269 (304)
Q Consensus 223 ~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V 269 (304)
..||+|++|+.+++.+|++|++++||||+ ..|+++|+++||++|+|
T Consensus 131 ~~Kp~~~~~~~~~~~~~~~p~~~~~vgD~-~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 131 SRKPDPDAYRRALEKLGIPPEEILFVGDS-PSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp SSTTSHHHHHHHHHHHTSSGGGEEEEESS-HHHHHHHHHTTSEEEEE
T ss_pred hhhhHHHHHHHHHHHcCCCcceEEEEeCC-HHHHHHHHHcCCeEEeC
Confidence 47999999999999999999999999999 69999999999999987
No 75
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.37 E-value=3.7e-13 Score=111.34 Aligned_cols=97 Identities=13% Similarity=0.038 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.++++.+.++.|+++ |.+ .++||... . .......++..+|+.+++.+.....||+|++|+.++++++++|++
T Consensus 88 ~~pg~~~~L~~L~~~-g~~~~i~s~~~~-~-----~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~ 160 (185)
T TIGR01990 88 VLPGIKNLLDDLKKN-NIKIALASASKN-A-----PTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSE 160 (185)
T ss_pred cCccHHHHHHHHHHC-CCeEEEEeCCcc-H-----HHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHH
Confidence 478999999999987 655 67787533 1 112233346677888888888888999999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEc
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVL 270 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~ 270 (304)
++||||+ .+|+++|+++||++|+|.
T Consensus 161 ~v~vgD~-~~di~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 161 CIGIEDA-QAGIEAIKAAGMFAVGVG 185 (185)
T ss_pred eEEEecC-HHHHHHHHHcCCEEEecC
Confidence 9999999 899999999999999984
No 76
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=99.36 E-value=2.7e-11 Score=105.62 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=48.5
Q ss_pred EEEEeE--EEEcCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 27 AFLFDC--VIWKGDK-LIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 27 ~i~fDi--tL~~~~~-~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
.|++|+ ||++..+ .++.+.++|++|+++|++++++|+ |++..+.+.++++|++
T Consensus 1 li~~DlDGTll~~~~~~~~~~~~~i~~l~~~g~~~~~~Tg---R~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 1 WIFTDLDGTLLDPHGYDWGPAKEVLERLQELGIPVIPCTS---KTAAEVEYLRKELGLE 56 (256)
T ss_pred CEEEcCCCCCcCCCCcCchHHHHHHHHHHHCCCeEEEEcC---CCHHHHHHHHHHcCCC
Confidence 478999 9998876 777899999999999999999998 9999999999999985
No 77
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.36 E-value=1.7e-11 Score=107.88 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=50.8
Q ss_pred ccCEEEEeE--EEEc-CCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 24 SVDAFLFDC--VIWK-GDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 24 ~~k~i~fDi--tL~~-~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
.+|.+++|+ ||++ +..+++.+.++|++|+++|++++++|| |+...+...++++|++
T Consensus 3 ~~kli~~DlDGTLl~~~~~~~~~~~~ai~~l~~~Gi~~~iaTg---R~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 3 MKLLVFTDLDGTLLDHHTYSYEPAKPALKALKEKGIPVIPCTS---KTAAEVEVLRKELGLE 61 (273)
T ss_pred cceEEEEcCcccCcCCCCcCcHHHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHHHcCCC
Confidence 389999999 9998 456888899999999999999999999 9999999999999986
No 78
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.33 E-value=7.9e-12 Score=103.39 Aligned_cols=67 Identities=24% Similarity=0.303 Sum_probs=52.5
Q ss_pred CcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEEC------CHHHHH
Q 022007 226 PSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTN------QVSDIL 299 (304)
Q Consensus 226 P~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~------~l~el~ 299 (304)
|++..++.+++++|+++++++||||+ .+|+.+++++|+.. .|. ... +... ..|+|+++ .+.|+.
T Consensus 96 ~k~~~l~~~~~~~gl~~~ev~~VGDs-~~D~~~a~~aG~~~-~v~--~~~-~~~~-----~~a~~v~~~~~g~g~~~el~ 165 (183)
T PRK09484 96 NKLIAFSDLLEKLAIAPEQVAYIGDD-LIDWPVMEKVGLSV-AVA--DAH-PLLL-----PRADYVTRIAGGRGAVREVC 165 (183)
T ss_pred cHHHHHHHHHHHhCCCHHHEEEECCC-HHHHHHHHHCCCeE-ecC--Chh-HHHH-----HhCCEEecCCCCCCHHHHHH
Confidence 44788999999999999999999999 89999999999873 342 222 2222 36899996 678888
Q ss_pred Hhh
Q 022007 300 ELL 302 (304)
Q Consensus 300 ~~l 302 (304)
++|
T Consensus 166 ~~i 168 (183)
T PRK09484 166 DLL 168 (183)
T ss_pred HHH
Confidence 765
No 79
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.32 E-value=5.7e-12 Score=102.33 Aligned_cols=60 Identities=23% Similarity=0.379 Sum_probs=52.0
Q ss_pred CCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECC
Q 022007 225 KPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQ 294 (304)
Q Consensus 225 KP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~ 294 (304)
||+|+.++.++++++++++++++|||+ .+|+.|++.+| +.++++++.. .++. .+++|+.+
T Consensus 81 kpkp~~~~~~~~~l~~~~~ev~~iGD~-~nDi~~~~~ag---~~~am~nA~~-~lk~-----~A~~I~~~ 140 (169)
T TIGR02726 81 KKKTEPYAQMLEEMNISDAEVCYVGDD-LVDLSMMKRVG---LAVAVGDAVA-DVKE-----AAAYVTTA 140 (169)
T ss_pred CCCHHHHHHHHHHcCcCHHHEEEECCC-HHHHHHHHHCC---CeEECcCchH-HHHH-----hCCEEcCC
Confidence 788999999999999999999999999 89999999999 8888888764 4443 57888753
No 80
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.32 E-value=6.5e-12 Score=100.95 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=50.1
Q ss_pred CCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHH
Q 022007 225 KPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVS 296 (304)
Q Consensus 225 KP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~ 296 (304)
||+|++++.+++++|+++++++||||+ .+|+.+++++|+. +.|..+. +.+.. .|++++.+..
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~~~~vGDs-~~D~~~~~~ag~~-~~v~~~~---~~~~~-----~a~~i~~~~~ 136 (154)
T TIGR01670 75 SNKLIAFSDILEKLALAPENVAYIGDD-LIDWPVMEKVGLS-VAVADAH---PLLIP-----RADYVTRIAG 136 (154)
T ss_pred cchHHHHHHHHHHcCCCHHHEEEECCC-HHHHHHHHHCCCe-EecCCcC---HHHHH-----hCCEEecCCC
Confidence 567999999999999999999999999 8999999999975 5565543 22332 5888887654
No 81
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.31 E-value=5.2e-11 Score=106.24 Aligned_cols=103 Identities=13% Similarity=0.011 Sum_probs=81.4
Q ss_pred CCHHHHHHHHHHHHcCCCc-eEEEecCCCccCCCCCccccChHHHHH-HHHHhhCCC-------CcccCCCcHHHHHHHH
Q 022007 165 INYYKLQYGTLCIRENPGC-LFIATNRDAVGHLTDLQEWPGAGCMVA-AMCASTEKE-------PIVVGKPSTFMMEILS 235 (304)
Q Consensus 165 ~~~~~~~~~l~~l~~~~~~-~~i~tn~~~~~~~~~~~~~~~~g~l~~-~~~~~~~~~-------~~~~gKP~~~~~~~al 235 (304)
..++++.+.++.|+++ |. .+++||++.... .......++.. +|+.+.+.+ ....+||+|.++..++
T Consensus 187 ~~~~~~~~~l~~l~~~-g~~i~i~T~r~~~~~----~~~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l 261 (300)
T PHA02530 187 KPNPMVVELVKMYKAA-GYEIIVVSGRDGVCE----EDTVEWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIF 261 (300)
T ss_pred CCChhHHHHHHHHHhC-CCEEEEEeCCChhhH----HHHHHHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHH
Confidence 4578999999999887 65 478899877332 12222233333 577777877 3446899999999999
Q ss_pred HHcCC-CCCcEEEEcCCchhhHHHHHHcCCeEEEEccCC
Q 022007 236 KKFQI-ASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGV 273 (304)
Q Consensus 236 ~~lg~-~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~ 273 (304)
++++. ++++|+||||+ .+|+++|+++||++++|.||.
T Consensus 262 ~~~~~~~~~~~~~vgD~-~~d~~~a~~~Gi~~i~v~~g~ 299 (300)
T PHA02530 262 WEKIAPKYDVLLAVDDR-DQVVDMWRRIGLECWQVAPGD 299 (300)
T ss_pred HHHhccCceEEEEEcCc-HHHHHHHHHhCCeEEEecCCC
Confidence 99988 67999999999 999999999999999999984
No 82
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=99.31 E-value=1.1e-10 Score=101.68 Aligned_cols=65 Identities=23% Similarity=0.283 Sum_probs=53.4
Q ss_pred ccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHH
Q 022007 222 VVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVS 296 (304)
Q Consensus 222 ~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~ 296 (304)
..+-.+..+++.+++++|++++++++|||+ .+|+.|++.+| +.|++|++.+ .++. .+++++.+..
T Consensus 184 ~~~~~K~~~i~~~~~~~~~~~~~~~~~GD~-~nD~~m~~~~~---~~~a~~na~~-~~k~-----~a~~~~~~n~ 248 (256)
T TIGR00099 184 AKGVSKGSALQSLAEALGISLEDVIAFGDG-MNDIEMLEAAG---YGVAMGNADE-ELKA-----LADYVTDSNN 248 (256)
T ss_pred CCCCChHHHHHHHHHHcCCCHHHEEEeCCc-HHhHHHHHhCC---ceeEecCchH-HHHH-----hCCEEecCCC
Confidence 334445899999999999999999999999 99999999999 6788887754 4443 5788887654
No 83
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.30 E-value=1.9e-12 Score=106.77 Aligned_cols=97 Identities=19% Similarity=0.105 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHHcCCCc-eEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGC-LFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~-~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.++++.+.++.|+++ |. .+++||..... . ......++..+|+.+++.+....+||+|++|+.+++++|++|++
T Consensus 86 ~~~g~~~~l~~l~~~-g~~~~i~Tn~~~~~-~----~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~ 159 (183)
T TIGR01509 86 PLPGVEPLLEALRAR-GKKLALLTNSPRDH-A----VLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEE 159 (183)
T ss_pred cCcCHHHHHHHHHHC-CCeEEEEeCCchHH-H----HHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcce
Confidence 367888999999877 65 47889977632 1 11111235567888777777889999999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEE
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLV 269 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V 269 (304)
++||||+ ..|+.+|+++||++|+|
T Consensus 160 ~~~vgD~-~~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 160 CLFVDDS-PAGIEAAKAAGMHTVLV 183 (183)
T ss_pred EEEEcCC-HHHHHHHHHcCCEEEeC
Confidence 9999999 79999999999999986
No 84
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.28 E-value=3.2e-12 Score=107.02 Aligned_cols=116 Identities=12% Similarity=0.034 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccCCCCCccccChHHHHH----HHHHhhCCCCcccCCCcHHHHHHHHHHcCCC
Q 022007 166 NYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVA----AMCASTEKEPIVVGKPSTFMMEILSKKFQIA 241 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~----~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~ 241 (304)
.|+++.+.++.|++. +..+++||+...... ......++.. +|+.+++.+. .||+|++|..+++++|
T Consensus 75 ~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~----~~~~~~~l~~~f~~~f~~i~~~~~---~~~kp~~~~~a~~~~~-- 144 (197)
T PHA02597 75 AYDDALDVINKLKED-YDFVAVTALGDSIDA----LLNRQFNLNALFPGAFSEVLMCGH---DESKEKLFIKAKEKYG-- 144 (197)
T ss_pred CCCCHHHHHHHHHhc-CCEEEEeCCccchhH----HHHhhCCHHHhCCCcccEEEEecc---CcccHHHHHHHHHHhC--
Confidence 488899999999876 656777886652211 0111111223 2344444444 4788999999999999
Q ss_pred CCcEEEEcCCchhhHHHHHHc--CCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHH
Q 022007 242 SSRMCMVGDRLDTDILFGQNA--GCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILE 300 (304)
Q Consensus 242 ~~~~~~IGD~~~~Di~~a~~a--G~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~ 300 (304)
|++++||||+ .+|+++|+++ ||++++|.+|+. +.. ..++|.+.|+.|+..
T Consensus 145 ~~~~v~vgDs-~~di~aA~~a~~Gi~~i~~~~~~~--~~~------~~~~~~~~~~~~~~~ 196 (197)
T PHA02597 145 DRVVCFVDDL-AHNLDAAHEALSQLPVIHMLRGER--DHI------PKLAHRVKSWNDIEN 196 (197)
T ss_pred CCcEEEeCCC-HHHHHHHHHHHcCCcEEEecchhh--ccc------cchhhhhccHHHHhc
Confidence 8899999999 8999999999 999999999964 211 257899999999863
No 85
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.27 E-value=2.5e-12 Score=106.45 Aligned_cols=96 Identities=20% Similarity=0.088 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCccc----CCCcHHHHHHHHHHcCCC
Q 022007 166 NYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVV----GKPSTFMMEILSKKFQIA 241 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~----gKP~~~~~~~al~~lg~~ 241 (304)
.++++.+.++.|+ ...+++||....... ......++..+|+.+++.+.... .||+|++|+.+++++|++
T Consensus 85 ~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~----~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~ 157 (184)
T TIGR01993 85 PDPELRNLLLRLP---GRKIIFTNGDRAHAR----RALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVD 157 (184)
T ss_pred CCHHHHHHHHhCC---CCEEEEeCCCHHHHH----HHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCC
Confidence 4778888888776 346888997763221 12222235677888888877666 599999999999999999
Q ss_pred CCcEEEEcCCchhhHHHHHHcCCeEEEE
Q 022007 242 SSRMCMVGDRLDTDILFGQNAGCKTLLV 269 (304)
Q Consensus 242 ~~~~~~IGD~~~~Di~~a~~aG~~ti~V 269 (304)
|++++||||+ ..|+++|+++||++++|
T Consensus 158 ~~~~l~vgD~-~~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 158 PERAIFFDDS-ARNIAAAKALGMKTVLV 184 (184)
T ss_pred ccceEEEeCC-HHHHHHHHHcCCEEeeC
Confidence 9999999999 89999999999999986
No 86
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.27 E-value=4.4e-12 Score=107.50 Aligned_cols=103 Identities=10% Similarity=-0.004 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.|+++.++++.|+++ |.+ +|+||......... ......+.+..+|+..+. .....||+|+.|..+++++|++|++
T Consensus 96 lypgv~e~L~~Lk~~-G~~l~I~Sn~s~~~~~~~-~~~~~~~~L~~~f~~~fd--~~~g~KP~p~~y~~i~~~lgv~p~e 171 (220)
T TIGR01691 96 LYPDVPPALEAWLQL-GLRLAVYSSGSVPAQKLL-FGHSDAGNLTPYFSGYFD--TTVGLKTEAQSYVKIAGQLGSPPRE 171 (220)
T ss_pred cCcCHHHHHHHHHHC-CCEEEEEeCCCHHHHHHH-HhhccccchhhhcceEEE--eCcccCCCHHHHHHHHHHhCcChhH
Confidence 588999999999887 664 78899765221100 000011234444544432 2234799999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEccCC
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVLSGV 273 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~~G~ 273 (304)
++||||+ ..|+++|+++||++++|.++.
T Consensus 172 ~lfVgDs-~~Di~AA~~AG~~ti~v~r~g 199 (220)
T TIGR01691 172 ILFLSDI-INELDAARKAGLHTGQLVRPG 199 (220)
T ss_pred EEEEeCC-HHHHHHHHHcCCEEEEEECCC
Confidence 9999999 899999999999999997754
No 87
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=99.22 E-value=3e-10 Score=98.00 Aligned_cols=62 Identities=26% Similarity=0.332 Sum_probs=53.6
Q ss_pred CcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHH
Q 022007 226 PSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSD 297 (304)
Q Consensus 226 P~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~e 297 (304)
-+..+++.+++.+|++++++++|||+ .||+.|.+.+| ..|++|++.++ ++. .+++++++..+
T Consensus 186 sK~~ai~~l~~~~~i~~~~~~~~GD~-~ND~~Ml~~~~---~~~am~na~~~-~k~-----~a~~i~~~~~~ 247 (254)
T PF08282_consen 186 SKGSAIKYLLEYLGISPEDIIAFGDS-ENDIEMLELAG---YSVAMGNATPE-LKK-----AADYITPSNND 247 (254)
T ss_dssp SHHHHHHHHHHHHTTSGGGEEEEESS-GGGHHHHHHSS---EEEEETTS-HH-HHH-----HSSEEESSGTC
T ss_pred CHHHHHHHHhhhcccccceeEEeecc-cccHhHHhhcC---eEEEEcCCCHH-HHH-----hCCEEecCCCC
Confidence 34888999999999999999999999 99999999999 99999998754 443 68888888765
No 88
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=99.22 E-value=5.6e-11 Score=95.60 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=38.4
Q ss_pred hccCEEEEeE--EE--EcCCccCccHHHHHHHHHHCCC--cEEEEeCCCCcC
Q 022007 23 DSVDAFLFDC--VI--WKGDKLIDGVRQTLDVLRSKGK--KLIFVTNNSRRS 68 (304)
Q Consensus 23 ~~~k~i~fDi--tL--~~~~~~~~~a~eal~~L~~~G~--~~~i~Tn~s~r~ 68 (304)
..+|+++||. || |+...+.|...++++++++.+. .++|+||+++..
T Consensus 39 ~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~ 90 (168)
T PF09419_consen 39 KGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSS 90 (168)
T ss_pred cCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcc
Confidence 4799999999 66 5777889999999999999876 499999975443
No 89
>PLN02954 phosphoserine phosphatase
Probab=99.21 E-value=1.3e-09 Score=93.07 Aligned_cols=72 Identities=19% Similarity=0.310 Sum_probs=56.1
Q ss_pred cCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhh
Q 022007 223 VGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELL 302 (304)
Q Consensus 223 ~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l 302 (304)
.++|+|.+++.+++.++. ++++||||+ .+|+.+|+++|+..+. .+|.....+... ..|+++++++.++.+++
T Consensus 152 ~~~~K~~~i~~~~~~~~~--~~~i~iGDs-~~Di~aa~~~~~~~~~-~~~~~~~~~~~~----~~~~~~i~~~~el~~~~ 223 (224)
T PLN02954 152 RSGGKAEAVQHIKKKHGY--KTMVMIGDG-ATDLEARKPGGADLFI-GYGGVQVREAVA----AKADWFVTDFQDLIEVL 223 (224)
T ss_pred CCccHHHHHHHHHHHcCC--CceEEEeCC-HHHHHhhhcCCCCEEE-ecCCCccCHHHH----hcCCEEECCHHHHHHhh
Confidence 467789999999998885 699999999 8999999998887664 455432222211 36999999999998876
No 90
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=99.17 E-value=7.6e-10 Score=94.30 Aligned_cols=53 Identities=15% Similarity=0.168 Sum_probs=47.0
Q ss_pred EEEEeE--EEEcCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 27 AFLFDC--VIWKGDK-LIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 27 ~i~fDi--tL~~~~~-~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
.|++|+ ||++.++ .++.++++|++|+++|++++++|| |+...+...++.+|++
T Consensus 1 ~i~~DlDGTLL~~~~~~~~~~~~~l~~l~~~gi~~~i~Tg---R~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 1 WVFSDLDGTLLDSHSYDWQPAAPWLTRLQEAGIPVILCTS---KTAAEVEYLQKALGLT 56 (221)
T ss_pred CEEEeCCCCCcCCCCCCcHHHHHHHHHHHHCCCeEEEEcC---CCHHHHHHHHHHcCCC
Confidence 378999 9998765 566699999999999999999999 9999999999999875
No 91
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.11 E-value=7e-10 Score=86.26 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=32.8
Q ss_pred CCCcHHHHHHHHHHcC--CCCCcEEEEcCCchhhHHHHHH
Q 022007 224 GKPSTFMMEILSKKFQ--IASSRMCMVGDRLDTDILFGQN 261 (304)
Q Consensus 224 gKP~~~~~~~al~~lg--~~~~~~~~IGD~~~~Di~~a~~ 261 (304)
.||+|++|..+++++| ++|++|+||||+ ..|+...++
T Consensus 88 ~~pkp~~~~~a~~~lg~~~~p~~~l~igDs-~~n~~~~~~ 126 (128)
T TIGR01681 88 WLPKSPRLVEIALKLNGVLKPKSILFVDDR-PDNNEEVDY 126 (128)
T ss_pred CCcHHHHHHHHHHHhcCCCCcceEEEECCC-HhHHHHHHh
Confidence 3588999999999999 999999999999 888876654
No 92
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=99.11 E-value=3.4e-09 Score=91.28 Aligned_cols=65 Identities=17% Similarity=0.283 Sum_probs=53.7
Q ss_pred CcccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCc----EEECC
Q 022007 220 PIVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPD----YYTNQ 294 (304)
Q Consensus 220 ~~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd----~v~~~ 294 (304)
....+++++.+++.+++++|++++++++|||+ .||+.|.+.+| ..|++|+..++ ++. .++ ||+++
T Consensus 153 i~~~~~~K~~al~~l~~~~g~~~~~~i~~GD~-~nD~~ml~~~~---~~iav~na~~~-~k~-----~a~~~~~~v~~~ 221 (236)
T TIGR02471 153 VLPLRASKGLALRYLSYRWGLPLEQILVAGDS-GNDEEMLRGLT---LGVVVGNHDPE-LEG-----LRHQQRIYFANN 221 (236)
T ss_pred EeeCCCChHHHHHHHHHHhCCCHHHEEEEcCC-ccHHHHHcCCC---cEEEEcCCcHH-HHH-----hhcCCcEEEcCC
Confidence 34567788999999999999999999999999 99999999999 88888987654 443 344 67765
No 93
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=99.09 E-value=3e-09 Score=90.84 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=48.5
Q ss_pred EEEEeE--EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 27 AFLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 27 ~i~fDi--tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
.|+||+ ||++.+..++++.++|++|+++|++++++|+ |++..+...++++|++
T Consensus 1 li~~DlDGTLl~~~~~~~~~~~ai~~l~~~G~~~vi~Tg---R~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 1 VIFTDLDGTLLPPGYEPGPAREALEELKDLGFPIVFVSS---KTRAEQEYYREELGVE 55 (225)
T ss_pred CEEEeCCCCCcCCCCCchHHHHHHHHHHHCCCEEEEEeC---CCHHHHHHHHHHcCCC
Confidence 479999 9999777888899999999999999999998 9999999999999985
No 94
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.08 E-value=5.5e-10 Score=94.01 Aligned_cols=121 Identities=12% Similarity=0.103 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHHHHhhC--CCCcccCCCcHHHHHHHHHHcCCCC-
Q 022007 167 YYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCASTE--KEPIVVGKPSTFMMEILSKKFQIAS- 242 (304)
Q Consensus 167 ~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~--~~~~~~gKP~~~~~~~al~~lg~~~- 242 (304)
.+++...++.|+.+ |++ .++|+..+.... ..+...+.+...|...+- ...+..|||+|++|..+++++|..|
T Consensus 94 ~PGa~kLv~~L~~~-gip~alat~s~~~~~~---~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~~ 169 (222)
T KOG2914|consen 94 MPGAEKLVNHLKNN-GIPVALATSSTSASFE---LKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPPP 169 (222)
T ss_pred CCcHHHHHHHHHhC-CCCeeEEecCCcccHH---HHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCCCc
Confidence 45777888888876 665 677887663321 112223345555655443 4458889999999999999999998
Q ss_pred CcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHH
Q 022007 243 SRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDI 298 (304)
Q Consensus 243 ~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el 298 (304)
+.|++|+|+ ...+++|+++||+.++|.+..-... . ...++.+++++.+.
T Consensus 170 ~k~lVfeds-~~Gv~aa~aagm~vi~v~~~~~~~~-~-----~~~~~~~~~~~~~~ 218 (222)
T KOG2914|consen 170 SKCLVFEDS-PVGVQAAKAAGMQVVGVATPDLSNL-F-----SAGATLILESLEDF 218 (222)
T ss_pred cceEEECCC-HHHHHHHHhcCCeEEEecCCCcchh-h-----hhccceeccccccc
Confidence 999999999 8999999999999999987221111 1 12566676666543
No 95
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=99.07 E-value=1.2e-08 Score=89.32 Aligned_cols=64 Identities=20% Similarity=0.159 Sum_probs=55.0
Q ss_pred CcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHc----CCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHh
Q 022007 226 PSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNA----GCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILEL 301 (304)
Q Consensus 226 P~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~a----G~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~ 301 (304)
-+...++.+++++|++.+++++|||+ .||+.|-+.+ | ..|.+|+... .+.|.+++..++..+
T Consensus 174 ~Kg~al~~ll~~~~~~~~~v~~~GD~-~nD~~mf~~~~~~~g---~~vavg~a~~----------~A~~~l~~~~~v~~~ 239 (266)
T PRK10187 174 NKGEAIAAFMQEAPFAGRTPVFVGDD-LTDEAGFAVVNRLGG---ISVKVGTGAT----------QASWRLAGVPDVWSW 239 (266)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEcCC-ccHHHHHHHHHhcCC---eEEEECCCCC----------cCeEeCCCHHHHHHH
Confidence 44889999999999999999999999 9999999998 5 7777786532 478899999999888
Q ss_pred hh
Q 022007 302 LG 303 (304)
Q Consensus 302 l~ 303 (304)
|.
T Consensus 240 L~ 241 (266)
T PRK10187 240 LE 241 (266)
T ss_pred HH
Confidence 74
No 96
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=99.06 E-value=1.6e-08 Score=87.83 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=46.3
Q ss_pred EEEEeE--EEEc---CC-ccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 27 AFLFDC--VIWK---GD-KLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 27 ~i~fDi--tL~~---~~-~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
+|+.|+ ||++ ++ ...|...+++++++++|++++++|+ |+..++.+.++++++.
T Consensus 3 li~tDlDGTLl~~~~~~~~~~~~~~~~i~~~~~~gi~fv~aTG---R~~~~~~~~~~~~~~~ 61 (249)
T TIGR01485 3 LLVSDLDNTLVDHTDGDNQALLRLNALLEDHRGEDSLLVYSTG---RSPHSYKELQKQKPLL 61 (249)
T ss_pred EEEEcCCCcCcCCCCCChHHHHHHHHHHHHhhccCceEEEEcC---CCHHHHHHHHhcCCCC
Confidence 688999 9996 44 4677889999999999999999999 9999999998888865
No 97
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.02 E-value=2.3e-10 Score=91.73 Aligned_cols=88 Identities=16% Similarity=0.049 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCcE
Q 022007 167 YYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRM 245 (304)
Q Consensus 167 ~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~~ 245 (304)
++++.+.+..|+++ |.+ +++||....... ...... +..+|..+++.+... +||+|++|..+++++|+++ +|
T Consensus 66 ~~g~~e~l~~L~~~-g~~~~i~T~~~~~~~~----~~~~~~-l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~~-~~ 137 (154)
T TIGR01549 66 IRGAADLLKRLKEA-GIKLGIISNGSLRAQK----LLLRKH-LGDYFDLILGSDEFG-AKPEPEIFLAALESLGLPP-EV 137 (154)
T ss_pred ccCHHHHHHHHHHC-cCeEEEEeCCchHHHH----HHHHHH-HHhcCcEEEecCCCC-CCcCHHHHHHHHHHcCCCC-CE
Confidence 46788999999877 654 788997763221 122222 445666677777776 9999999999999999999 99
Q ss_pred EEEcCCchhhHHHHHHcC
Q 022007 246 CMVGDRLDTDILFGQNAG 263 (304)
Q Consensus 246 ~~IGD~~~~Di~~a~~aG 263 (304)
+||||+ ..|+++|+++|
T Consensus 138 l~iGDs-~~Di~aa~~aG 154 (154)
T TIGR01549 138 LHVGDN-LNDIEGARNAG 154 (154)
T ss_pred EEEeCC-HHHHHHHHHcc
Confidence 999999 89999999987
No 98
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=98.99 E-value=3.3e-08 Score=88.63 Aligned_cols=70 Identities=17% Similarity=0.270 Sum_probs=56.6
Q ss_pred ccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEEC--CHHHHH
Q 022007 222 VVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTN--QVSDIL 299 (304)
Q Consensus 222 ~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~--~l~el~ 299 (304)
..+||+++.++.+++++|++++++++|||+ .+|+.|++.|| +.|++ +.. +.++. .++++++ +++.++
T Consensus 244 v~~k~K~~~L~~la~~lgi~~~qtIaVGDg-~NDl~m~~~AG---lgiA~-nAk-p~Vk~-----~Ad~~i~~~~l~~~l 312 (322)
T PRK11133 244 VDAQYKADTLTRLAQEYEIPLAQTVAIGDG-ANDLPMIKAAG---LGIAY-HAK-PKVNE-----QAQVTIRHADLMGVL 312 (322)
T ss_pred CCcccHHHHHHHHHHHcCCChhhEEEEECC-HHHHHHHHHCC---CeEEe-CCC-HHHHh-----hCCEEecCcCHHHHH
Confidence 356899999999999999999999999999 89999999999 56666 444 44553 6888876 566666
Q ss_pred Hhh
Q 022007 300 ELL 302 (304)
Q Consensus 300 ~~l 302 (304)
-+|
T Consensus 313 ~~~ 315 (322)
T PRK11133 313 CIL 315 (322)
T ss_pred HHh
Confidence 554
No 99
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.98 E-value=6e-09 Score=98.58 Aligned_cols=42 Identities=29% Similarity=0.290 Sum_probs=36.7
Q ss_pred ccCCCcHHHHHHHHHHcC----CCCCcEEEEcCCchhhHHHHHHcCC
Q 022007 222 VVGKPSTFMMEILSKKFQ----IASSRMCMVGDRLDTDILFGQNAGC 264 (304)
Q Consensus 222 ~~gKP~~~~~~~al~~lg----~~~~~~~~IGD~~~~Di~~a~~aG~ 264 (304)
.++||+|.++..++++++ +++++++||||+ ..|+++|+++|-
T Consensus 260 ~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDa-agr~~~g~~ag~ 305 (526)
T TIGR01663 260 FYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDA-AGRPANGKAAGK 305 (526)
T ss_pred CCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCc-ccchHHHHhcCC
Confidence 468999999999999985 899999999999 888877777664
No 100
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=98.95 E-value=4.6e-09 Score=88.29 Aligned_cols=51 Identities=25% Similarity=0.398 Sum_probs=43.5
Q ss_pred EEEEeE--EEEcCC--ccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCC
Q 022007 27 AFLFDC--VIWKGD--KLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLG 80 (304)
Q Consensus 27 ~i~fDi--tL~~~~--~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG 80 (304)
+++||+ ||...+ ++.+.+.++|++|+++|++++++|+ |+...+.+.++.++
T Consensus 1 li~~D~DgTL~~~~~~~~~~~~~~~l~~l~~~g~~~~i~TG---R~~~~~~~~~~~~~ 55 (204)
T TIGR01484 1 LLFFDLDGTLLDPNAHELSPETIEALERLREAGVKVVLVTG---RSLAEIKELLKQLP 55 (204)
T ss_pred CEEEeCcCCCcCCCCCcCCHHHHHHHHHHHHCCCEEEEECC---CCHHHHHHHHHhCC
Confidence 478999 999765 4667889999999999999999999 88888888887644
No 101
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=98.94 E-value=2.3e-09 Score=91.73 Aligned_cols=103 Identities=16% Similarity=0.029 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHHHcCCCc-eEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCC
Q 022007 165 INYYKLQYGTLCIRENPGC-LFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASS 243 (304)
Q Consensus 165 ~~~~~~~~~l~~l~~~~~~-~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~ 243 (304)
..++.+.+.++.++++ |. .+++||+...-.......+....++..+|..+++.+.....||++. .+++.+++
T Consensus 114 ~p~~~a~elL~~l~~~-G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~---~~l~~~~i--- 186 (237)
T TIGR01672 114 IPKEVARQLIDMHQRR-GDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKT---QWIQDKNI--- 186 (237)
T ss_pred cchhHHHHHHHHHHHC-CCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHH---HHHHhCCC---
Confidence 3567789999999988 55 5889998431111111112222224456666778777777888875 35566665
Q ss_pred cEEEEcCCchhhHHHHHHcCCeEEEEccCCCCc
Q 022007 244 RMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQ 276 (304)
Q Consensus 244 ~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~ 276 (304)
++||||+ .+||.+|+++|++++.|.||.++.
T Consensus 187 -~i~vGDs-~~DI~aAk~AGi~~I~V~~g~~s~ 217 (237)
T TIGR01672 187 -RIHYGDS-DNDITAAKEAGARGIRILRASNST 217 (237)
T ss_pred -eEEEeCC-HHHHHHHHHCCCCEEEEEecCCCC
Confidence 7999999 899999999999999999998764
No 102
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=98.90 E-value=7.7e-10 Score=92.57 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=67.2
Q ss_pred HHHHHHHHHcCCCc-eEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCcEEEE
Q 022007 170 LQYGTLCIRENPGC-LFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRMCMV 248 (304)
Q Consensus 170 ~~~~l~~l~~~~~~-~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~~~~I 248 (304)
..+.++.|+++ |. ..++||+..... ...+...++..+|+.+++.+.... ||+|++|..+++++|+++++|+||
T Consensus 111 ~~~~L~~l~~~-g~~~~i~T~~~~~~~----~~~l~~~gl~~~f~~~~~~~~~~~-KP~p~~~~~~~~~~~~~~~~~i~v 184 (197)
T TIGR01548 111 PKGLLRELHRA-PKGMAVVTGRPRKDA----AKFLTTHGLEILFPVQIWMEDCPP-KPNPEPLILAAKALGVEACHAAMV 184 (197)
T ss_pred HHHHHHHHHHc-CCcEEEECCCCHHHH----HHHHHHcCchhhCCEEEeecCCCC-CcCHHHHHHHHHHhCcCcccEEEE
Confidence 36778888876 55 578999876321 122222335677888888887666 999999999999999999999999
Q ss_pred cCCchhhHHHHHHc
Q 022007 249 GDRLDTDILFGQNA 262 (304)
Q Consensus 249 GD~~~~Di~~a~~a 262 (304)
||+ .+|+++|+++
T Consensus 185 GD~-~~Di~aA~~a 197 (197)
T TIGR01548 185 GDT-VDDIITGRKA 197 (197)
T ss_pred eCC-HHHHHHHHhC
Confidence 999 8999999975
No 103
>PTZ00445 p36-lilke protein; Provisional
Probab=98.90 E-value=1.4e-08 Score=83.74 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=46.4
Q ss_pred ccCCCcHHH--H--HHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccC
Q 022007 222 VVGKPSTFM--M--EILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSG 272 (304)
Q Consensus 222 ~~gKP~~~~--~--~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G 272 (304)
..-||.|++ | +.+++++|++|+++++|-|+ ...+++|++.|++++.+..+
T Consensus 154 gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~-~~NVeaA~~lGi~ai~f~~~ 207 (219)
T PTZ00445 154 GLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDD-MNNCKNALKEGYIALHVTGN 207 (219)
T ss_pred cccCCCccchHHHHHHHHHHcCCCHHHeEeecCC-HHHHHHHHHCCCEEEEcCCh
Confidence 457999999 9 99999999999999999999 88999999999999998643
No 104
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=98.85 E-value=5e-10 Score=91.80 Aligned_cols=84 Identities=11% Similarity=0.101 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHcCCCceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCcEE
Q 022007 167 YYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRMC 246 (304)
Q Consensus 167 ~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~~~ 246 (304)
|+++.+.++. ..++||.+..... ......++..+|+.+++.+.+..+||+|++|+.+++++|++|++|+
T Consensus 92 ~~g~~~~L~~-------~~i~Tn~~~~~~~----~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l 160 (175)
T TIGR01493 92 WPDSAAALAR-------VAILSNASHWAFD----QFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVL 160 (175)
T ss_pred CCchHHHHHH-------HhhhhCCCHHHHH----HHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeE
Confidence 5566565542 4578887663221 1222223667888888888888999999999999999999999999
Q ss_pred EEcCCchhhHHHHHHc
Q 022007 247 MVGDRLDTDILFGQNA 262 (304)
Q Consensus 247 ~IGD~~~~Di~~a~~a 262 (304)
||||+ .+|+.+|+++
T Consensus 161 ~vgD~-~~Di~~A~~~ 175 (175)
T TIGR01493 161 MVAAH-QWDLIGARKF 175 (175)
T ss_pred eEecC-hhhHHHHhcC
Confidence 99999 8999999874
No 105
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.83 E-value=1.9e-08 Score=90.57 Aligned_cols=41 Identities=10% Similarity=0.088 Sum_probs=38.1
Q ss_pred CCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCe
Q 022007 224 GKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCK 265 (304)
Q Consensus 224 gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ 265 (304)
.||+|+.+..+++.+|+.+++++||||+ ..|+.++++++-.
T Consensus 85 ~~pk~~~i~~~~~~l~i~~~~~vfidD~-~~d~~~~~~~lp~ 125 (320)
T TIGR01686 85 WGPKSESLRKIAKKLNLGTDSFLFIDDN-PAERANVKITLPV 125 (320)
T ss_pred cCchHHHHHHHHHHhCCCcCcEEEECCC-HHHHHHHHHHCCC
Confidence 5899999999999999999999999999 8999999998743
No 106
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=98.79 E-value=2.1e-08 Score=80.80 Aligned_cols=46 Identities=33% Similarity=0.396 Sum_probs=35.7
Q ss_pred ccCCCcHHHHHHHHHHcC----CCCCcEEEEcCCc----------hhhHHHHHHcCCeEE
Q 022007 222 VVGKPSTFMMEILSKKFQ----IASSRMCMVGDRL----------DTDILFGQNAGCKTL 267 (304)
Q Consensus 222 ~~gKP~~~~~~~al~~lg----~~~~~~~~IGD~~----------~~Di~~a~~aG~~ti 267 (304)
.++||.+.|++.+++.++ ++.++++||||.. .+|...|.++|++..
T Consensus 94 ~~RKP~~GM~~~~~~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f~ 153 (159)
T PF08645_consen 94 PCRKPNPGMWEFALKDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKFY 153 (159)
T ss_dssp TTSTTSSHHHHHHCCCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--EE
T ss_pred CCCCCchhHHHHHHHhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCccc
Confidence 469999999999999987 4899999999942 479999999998643
No 107
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=98.78 E-value=1e-08 Score=81.74 Aligned_cols=42 Identities=12% Similarity=-0.007 Sum_probs=37.0
Q ss_pred cccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEE
Q 022007 221 IVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLV 269 (304)
Q Consensus 221 ~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V 269 (304)
+..+||+ |.++++++|.+|++|+||||+ .+|+++++++| +.|
T Consensus 97 ~~~~KP~---~~k~l~~l~~~p~~~i~i~Ds-~~~~~aa~~ng---I~i 138 (148)
T smart00577 97 CVFVKGK---YVKDLSLLGRDLSNVIIIDDS-PDSWPFHPENL---IPI 138 (148)
T ss_pred ccccCCe---EeecHHHcCCChhcEEEEECC-HHHhhcCccCE---EEe
Confidence 3446876 888999999999999999999 89999999999 655
No 108
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=98.77 E-value=3.3e-07 Score=79.36 Aligned_cols=65 Identities=18% Similarity=0.102 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHc-------CCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHH
Q 022007 228 TFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNA-------GCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILE 300 (304)
Q Consensus 228 ~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~a-------G~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~ 300 (304)
...++.+++++++++++++||||+ .+|+.|++.+ |..++.|..|. .. ..++|+++++.++.+
T Consensus 169 g~a~~~~~~~~~~~~~~~i~iGD~-~~D~~~~~~~~~~~~~~g~~~v~v~~g~-----~~-----~~A~~~~~~~~~v~~ 237 (244)
T TIGR00685 169 GEIVKRLLWHQPGSGISPVYLGDD-ITDEDAFRVVNNQWGNYGFYPVPIGSGS-----KK-----TVAKFHLTGPQQVLE 237 (244)
T ss_pred HHHHHHHHHhcccCCCceEEEcCC-CcHHHHHHHHhcccCCCCeEEEEEecCC-----cC-----CCceEeCCCHHHHHH
Confidence 688999999999999999999999 9999999999 77777776452 11 368999999999998
Q ss_pred hhh
Q 022007 301 LLG 303 (304)
Q Consensus 301 ~l~ 303 (304)
+|.
T Consensus 238 ~L~ 240 (244)
T TIGR00685 238 FLG 240 (244)
T ss_pred HHH
Confidence 875
No 109
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=98.74 E-value=5e-07 Score=87.04 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=49.5
Q ss_pred ccCEEEEeE--EEEcCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 24 SVDAFLFDC--VIWKGDK-LIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 24 ~~k~i~fDi--tL~~~~~-~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
..|+|++|+ ||++.+. ..+.+.++|++|+++|++++++|+ |+...+...++++|++
T Consensus 415 ~~KLIfsDLDGTLLd~d~~i~~~t~eAL~~L~ekGI~~VIATG---Rs~~~i~~l~~~Lgl~ 473 (694)
T PRK14502 415 FKKIVYTDLDGTLLNPLTYSYSTALDALRLLKDKELPLVFCSA---KTMGEQDLYRNELGIK 473 (694)
T ss_pred eeeEEEEECcCCCcCCCCccCHHHHHHHHHHHHcCCeEEEEeC---CCHHHHHHHHHHcCCC
Confidence 468999999 9998654 667789999999999999999999 9999988888889875
No 110
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.74 E-value=4e-08 Score=83.47 Aligned_cols=121 Identities=22% Similarity=0.163 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHHHHh--------hCC--CCcccCCCcHHHHHHH
Q 022007 166 NYYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCAS--------TEK--EPIVVGKPSTFMMEIL 234 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~--------~~~--~~~~~gKP~~~~~~~a 234 (304)
.++++.+.++.|+++ |.+ +++||....... .+....++...+... ++. .....++|+|.+|+.+
T Consensus 86 ~~~g~~~~l~~l~~~-g~~~~IvS~~~~~~~~----~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 160 (219)
T TIGR00338 86 LTEGAEELVKTLKEK-GYKVAVISGGFDLFAE----HVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLIL 160 (219)
T ss_pred cCCCHHHHHHHHHHC-CCEEEEECCCcHHHHH----HHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHH
Confidence 366788888899887 665 678885441110 000000011111100 000 0113357889999999
Q ss_pred HHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEEC--CHHHHHHhh
Q 022007 235 SKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTN--QVSDILELL 302 (304)
Q Consensus 235 l~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~--~l~el~~~l 302 (304)
++++++++++|+||||+ .+|+.+|+++|+..+ ++ +. +.+.. .+++++. ++.++..+|
T Consensus 161 ~~~~~~~~~~~i~iGDs-~~Di~aa~~ag~~i~---~~-~~-~~~~~-----~a~~~i~~~~~~~~~~~~ 219 (219)
T TIGR00338 161 LRKEGISPENTVAVGDG-ANDLSMIKAAGLGIA---FN-AK-PKLQQ-----KADICINKKDLTDILPLL 219 (219)
T ss_pred HHHcCCCHHHEEEEECC-HHHHHHHHhCCCeEE---eC-CC-HHHHH-----hchhccCCCCHHHHHhhC
Confidence 99999999999999999 899999999997642 32 12 22332 6888855 778887654
No 111
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=98.72 E-value=2.9e-08 Score=84.90 Aligned_cols=102 Identities=18% Similarity=0.106 Sum_probs=67.1
Q ss_pred CCCHHHHHHHHHHHHcCCCc-eEEEecCCCccCCCCCccccChHHH--HHHHHHhhCCCCcccCCCcHHHHHHHHHHcCC
Q 022007 164 HINYYKLQYGTLCIRENPGC-LFIATNRDAVGHLTDLQEWPGAGCM--VAAMCASTEKEPIVVGKPSTFMMEILSKKFQI 240 (304)
Q Consensus 164 ~~~~~~~~~~l~~l~~~~~~-~~i~tn~~~~~~~~~~~~~~~~g~l--~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~ 240 (304)
...|+++.+.++.++++ |. .+++||.+..........+....++ ..+|..+++.+. ..||++.. +++.+++
T Consensus 113 a~p~~Ga~elL~~L~~~-G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~--~~K~~K~~---~l~~~~i 186 (237)
T PRK11009 113 SIPKEVARQLIDMHVKR-GDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDK--PGQYTKTQ---WLKKKNI 186 (237)
T ss_pred CcchHHHHHHHHHHHHC-CCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCC--CCCCCHHH---HHHhcCC
Confidence 34688999999999887 55 5788997541110000111110112 233344455543 36777753 4556665
Q ss_pred CCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCc
Q 022007 241 ASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQ 276 (304)
Q Consensus 241 ~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~ 276 (304)
++||||+ .+|+.+|++||++++.|.||.+..
T Consensus 187 ----~I~IGDs-~~Di~aA~~AGi~~I~v~~G~~~~ 217 (237)
T PRK11009 187 ----RIFYGDS-DNDITAAREAGARGIRILRAANST 217 (237)
T ss_pred ----eEEEcCC-HHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999 899999999999999999998753
No 112
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=98.70 E-value=6.2e-08 Score=82.44 Aligned_cols=63 Identities=16% Similarity=0.062 Sum_probs=45.4
Q ss_pred HHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhhh
Q 022007 233 ILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELLG 303 (304)
Q Consensus 233 ~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l~ 303 (304)
.+++.++.++++++||||+ .+|+.+|++||+..+ .+.-. +... ....|.+.++++.|+.+.|.
T Consensus 151 ~~l~~~~~~~~~~i~iGDs-~~Di~aa~~Ag~~~a---~~~l~-~~~~---~~~~~~~~~~~f~ei~~~l~ 213 (219)
T PRK09552 151 SLIRKLSDTNDFHIVIGDS-ITDLEAAKQADKVFA---RDFLI-TKCE---ELGIPYTPFETFHDVQTELK 213 (219)
T ss_pred HHHHHhccCCCCEEEEeCC-HHHHHHHHHCCccee---HHHHH-HHHH---HcCCCccccCCHHHHHHHHH
Confidence 4777888999999999999 999999999997222 33111 1000 11357888999999988764
No 113
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.64 E-value=3.6e-08 Score=81.03 Aligned_cols=85 Identities=24% Similarity=0.117 Sum_probs=70.0
Q ss_pred eEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCC------cccCCCcHHHHHHHHHHcCCC-CCcEEEEcCCchhhH
Q 022007 184 LFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEP------IVVGKPSTFMMEILSKKFQIA-SSRMCMVGDRLDTDI 256 (304)
Q Consensus 184 ~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~------~~~gKP~~~~~~~al~~lg~~-~~~~~~IGD~~~~Di 256 (304)
++++||.+.... ...+...++.+.|+.++..+. ..+.||++++|+.+.+..|++ |.++++|.|| .+.|
T Consensus 117 k~~FTNa~k~HA----~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi~~p~~t~FfDDS-~~NI 191 (244)
T KOG3109|consen 117 KWIFTNAYKVHA----IRILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGIDSPRNTYFFDDS-ERNI 191 (244)
T ss_pred EEEecCCcHHHH----HHHHHHhChHHhccceeEeeccCCCCCceeecCCHHHHHHHHHHhCCCCcCceEEEcCc-hhhH
Confidence 788999888432 233334457888888876543 457999999999999999998 9999999999 8999
Q ss_pred HHHHHcCCeEEEEccCC
Q 022007 257 LFGQNAGCKTLLVLSGV 273 (304)
Q Consensus 257 ~~a~~aG~~ti~V~~G~ 273 (304)
++|++.||++++|....
T Consensus 192 ~~ak~vGl~tvlv~~~~ 208 (244)
T KOG3109|consen 192 QTAKEVGLKTVLVGREH 208 (244)
T ss_pred HHHHhccceeEEEEeee
Confidence 99999999999997654
No 114
>PLN02382 probable sucrose-phosphatase
Probab=98.63 E-value=1.8e-06 Score=80.28 Aligned_cols=48 Identities=17% Similarity=0.099 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHc---CCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCcc
Q 022007 227 STFMMEILSKKF---QIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQS 277 (304)
Q Consensus 227 ~~~~~~~al~~l---g~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~ 277 (304)
+..+++.+++++ |++++++++|||+ .||++|.+.+|.. .|++|++.++
T Consensus 176 Kg~Al~~L~~~~~~~gi~~~~~iafGDs-~NDleMl~~ag~~--gvam~NA~~e 226 (413)
T PLN02382 176 KGQALAYLLKKLKAEGKAPVNTLVCGDS-GNDAELFSVPDVY--GVMVSNAQEE 226 (413)
T ss_pred HHHHHHHHHHHhhhcCCChhcEEEEeCC-HHHHHHHhcCCCC--EEEEcCCcHH
Confidence 388899999999 9999999999999 9999999999942 6677887654
No 115
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.59 E-value=6.1e-07 Score=74.96 Aligned_cols=43 Identities=19% Similarity=0.158 Sum_probs=38.0
Q ss_pred CcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEE
Q 022007 226 PSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLV 269 (304)
Q Consensus 226 P~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V 269 (304)
|+++.++.+++++|+++++++||||+ .+|+.+|+++|+..+..
T Consensus 147 ~k~~~~~~~~~~~~~~~~~~i~iGDs-~~D~~~a~~ag~~~a~~ 189 (201)
T TIGR01491 147 NKGEAVERLKRELNPSLTETVAVGDS-KNDLPMFEVADISISLG 189 (201)
T ss_pred cHHHHHHHHHHHhCCCHHHEEEEcCC-HhHHHHHHhcCCeEEEC
Confidence 45678999999999999999999999 89999999999866543
No 116
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.58 E-value=3.3e-07 Score=79.87 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=49.8
Q ss_pred cCEEEEeE--EEEcCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 25 VDAFLFDC--VIWKGDK-LIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 25 ~k~i~fDi--tL~~~~~-~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
+|.||+|+ ||++.+. ..+.+.++|++|+++|++++++|+ |+..++....+++|++
T Consensus 1 ~KLIftDLDGTLLd~~~~~~~~a~~aL~~Lk~~GI~vVlaTG---Rt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEFNSYGAARQALAALERRSIPLVLYSL---RTRAQLEHLCRQLRLE 58 (302)
T ss_pred CcEEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHHHhCCC
Confidence 58999999 9998654 677799999999999999999999 9999999999999986
No 117
>PTZ00174 phosphomannomutase; Provisional
Probab=98.52 E-value=1.2e-06 Score=75.90 Aligned_cols=53 Identities=23% Similarity=0.285 Sum_probs=46.1
Q ss_pred ccCEEEEeE--EEEcCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhC
Q 022007 24 SVDAFLFDC--VIWKGDK-LIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSL 79 (304)
Q Consensus 24 ~~k~i~fDi--tL~~~~~-~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~l 79 (304)
.+|+|+||+ ||++++. +.|.++++|++|+++|+.++++|+ |+...+.+.+...
T Consensus 4 ~~klia~DlDGTLL~~~~~is~~~~~ai~~l~~~Gi~~viaTG---R~~~~i~~~l~~~ 59 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPRNPITQEMKDTLAKLKSKGFKIGVVGG---SDYPKIKEQLGED 59 (247)
T ss_pred CCeEEEEECcCCCcCCCCCCCHHHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHhhh
Confidence 589999999 9998875 666789999999999999999999 8888887777643
No 118
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=98.48 E-value=3.7e-06 Score=83.89 Aligned_cols=64 Identities=17% Similarity=0.090 Sum_probs=51.8
Q ss_pred cHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhhh
Q 022007 227 STFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELLG 303 (304)
Q Consensus 227 ~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l~ 303 (304)
+..+++.+++ +++++.+++|||+ .||..|.+.++.....|.+|+.. ..++|++++..|+.++|.
T Consensus 658 KG~al~~ll~--~~~~d~vl~~GD~-~nDe~Mf~~~~~~~~~v~vG~~~----------s~A~~~l~~~~eV~~~L~ 721 (726)
T PRK14501 658 KGRAVRRLLE--AGPYDFVLAIGDD-TTDEDMFRALPETAITVKVGPGE----------SRARYRLPSQREVRELLR 721 (726)
T ss_pred HHHHHHHHHh--cCCCCEEEEECCC-CChHHHHHhcccCceEEEECCCC----------CcceEeCCCHHHHHHHHH
Confidence 4778888888 6788999999999 89999999985445777888742 258899999999887764
No 119
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.39 E-value=1.5e-06 Score=73.72 Aligned_cols=62 Identities=13% Similarity=0.072 Sum_probs=41.6
Q ss_pred HHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhhh
Q 022007 234 LSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELLG 303 (304)
Q Consensus 234 al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l~ 303 (304)
+++.++..+++++||||+ .+|+.+|+.||+ .+..+.-... ... ...|....+++.|+.+.|.
T Consensus 148 ~l~~~~~~~~~~i~iGDg-~~D~~~a~~Ad~---~~ar~~l~~~-~~~---~~~~~~~~~~f~di~~~l~ 209 (214)
T TIGR03333 148 LIRKLSEPNDYHIVIGDS-VTDVEAAKQSDL---CFARDYLLNE-CEE---LGLNHAPFQDFYDVRKELE 209 (214)
T ss_pred HHHHHhhcCCcEEEEeCC-HHHHHHHHhCCe---eEehHHHHHH-HHH---cCCCccCcCCHHHHHHHHH
Confidence 344455578899999999 999999999995 4444421110 111 1246666899999987764
No 120
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=98.39 E-value=9.2e-07 Score=74.24 Aligned_cols=123 Identities=12% Similarity=-0.034 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccCCCCCccccChHHHHHHHHHhhCC--CC--cccCCCcHHHHHHHHHHcCCC
Q 022007 166 NYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEK--EP--IVVGKPSTFMMEILSKKFQIA 241 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~--~~--~~~gKP~~~~~~~al~~lg~~ 241 (304)
.|+++.+.+..++++ ...+++||+...... .+....++..+|...+.. +. ....+|.|.....+++.++..
T Consensus 69 ~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~----~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~ 143 (205)
T PRK13582 69 PLPGAVEFLDWLRER-FQVVILSDTFYEFAG----PLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSL 143 (205)
T ss_pred CCCCHHHHHHHHHhc-CCEEEEeCCcHHHHH----HHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHHh
Confidence 377888899999876 556788887663211 111111122223221111 11 111233444556666677777
Q ss_pred CCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcE-EECCHHHHHHhhh
Q 022007 242 SSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDY-YTNQVSDILELLG 303 (304)
Q Consensus 242 ~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~-v~~~l~el~~~l~ 303 (304)
+++++||||+ .+|+.+++++|+ +|.++.. +.... ..|++ +++++.|+.+++.
T Consensus 144 ~~~~v~iGDs-~~D~~~~~aa~~---~v~~~~~--~~~~~----~~~~~~~~~~~~el~~~l~ 196 (205)
T PRK13582 144 GYRVIAAGDS-YNDTTMLGEADA---GILFRPP--ANVIA----EFPQFPAVHTYDELLAAID 196 (205)
T ss_pred CCeEEEEeCC-HHHHHHHHhCCC---CEEECCC--HHHHH----hCCcccccCCHHHHHHHHH
Confidence 8999999999 899999999996 3333332 22211 24665 8999999988764
No 121
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=98.38 E-value=3.3e-06 Score=81.37 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=43.5
Q ss_pred CCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEE--CCHHHHHHhhh
Q 022007 239 QIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYT--NQVSDILELLG 303 (304)
Q Consensus 239 g~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~--~~l~el~~~l~ 303 (304)
+.+.++++||||+ .+|+.+++++| ++|.+|+...+... ..+|+++ +++.++.+++.
T Consensus 422 ~~~~~~v~~vGDg-~nD~~al~~A~---vgia~g~~~~~~~~-----~~ad~vl~~~~l~~l~~~i~ 479 (536)
T TIGR01512 422 REKYGPVAMVGDG-INDAPALAAAD---VGIAMGASGSDVAI-----ETADVVLLNDDLSRLPQAIR 479 (536)
T ss_pred HhcCCEEEEEeCC-HHHHHHHHhCC---EEEEeCCCccHHHH-----HhCCEEEECCCHHHHHHHHH
Confidence 3345799999999 89999999999 89999953222222 2689998 89999987653
No 122
>PLN02580 trehalose-phosphatase
Probab=98.35 E-value=5.2e-05 Score=69.17 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=51.8
Q ss_pred cHHHHHHHHHHcCCCCCc---EEEEcCCchhhHHHHHHcCC--eEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHh
Q 022007 227 STFMMEILSKKFQIASSR---MCMVGDRLDTDILFGQNAGC--KTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILEL 301 (304)
Q Consensus 227 ~~~~~~~al~~lg~~~~~---~~~IGD~~~~Di~~a~~aG~--~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~ 301 (304)
+...++.++++++++..+ .++|||+ .||..|-+.+.- ..+.|.+|++..+ ..+.|.+++..|+.++
T Consensus 302 KG~Av~~Ll~~~g~~~~d~~~pi~iGDD-~TDedmF~~L~~~~~G~~I~Vgn~~~~--------t~A~y~L~dp~eV~~~ 372 (384)
T PLN02580 302 KGKAVEFLLESLGLSNCDDVLPIYIGDD-RTDEDAFKVLREGNRGYGILVSSVPKE--------SNAFYSLRDPSEVMEF 372 (384)
T ss_pred HHHHHHHHHHhcCCCcccceeEEEECCC-chHHHHHHhhhccCCceEEEEecCCCC--------ccceEEcCCHHHHHHH
Confidence 378899999999987663 3899999 999999996311 1166667765432 3689999999999988
Q ss_pred hh
Q 022007 302 LG 303 (304)
Q Consensus 302 l~ 303 (304)
|.
T Consensus 373 L~ 374 (384)
T PLN02580 373 LK 374 (384)
T ss_pred HH
Confidence 75
No 123
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=98.30 E-value=5.1e-06 Score=74.67 Aligned_cols=41 Identities=15% Similarity=0.334 Sum_probs=37.1
Q ss_pred HHHHHHHcCCCCCcEEEEcCCchhhHHHHH-HcCCeEEEEcc
Q 022007 231 MEILSKKFQIASSRMCMVGDRLDTDILFGQ-NAGCKTLLVLS 271 (304)
Q Consensus 231 ~~~al~~lg~~~~~~~~IGD~~~~Di~~a~-~aG~~ti~V~~ 271 (304)
...+.+.+|++++++++|||++.+||.+++ .+||+|++|..
T Consensus 283 ~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~p 324 (343)
T TIGR02244 283 LKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIP 324 (343)
T ss_pred HHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEch
Confidence 566677789999999999999999999999 99999999954
No 124
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=98.24 E-value=4.2e-06 Score=70.43 Aligned_cols=85 Identities=20% Similarity=0.174 Sum_probs=64.6
Q ss_pred CCCCHHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHHHHhhCCCC---ccc--CCCcHHHHHHHHH
Q 022007 163 PHINYYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEP---IVV--GKPSTFMMEILSK 236 (304)
Q Consensus 163 ~~~~~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~---~~~--gKP~~~~~~~al~ 236 (304)
....++++.++++.|++. |++ .++|+... .....+...+|.+. ... +||++.+|..+++
T Consensus 125 ~d~~~~~~~~~l~~L~~~-Gi~~~i~TGD~~--------------~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~ 189 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEA-GIKVAILTGDNE--------------STASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIK 189 (215)
T ss_dssp EEEBHTTHHHHHHHHHHT-TEEEEEEESSEH--------------HHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHH
T ss_pred cCcchhhhhhhhhhhhcc-Ccceeeeecccc--------------ccccccccccccccccccccccccccchhHHHHHH
Confidence 345688999999999987 775 55665322 12333444455532 222 5999999999999
Q ss_pred HcCCCCCcEEEEcCCchhhHHHHHHcC
Q 022007 237 KFQIASSRMCMVGDRLDTDILFGQNAG 263 (304)
Q Consensus 237 ~lg~~~~~~~~IGD~~~~Di~~a~~aG 263 (304)
.+++++++|+||||+ .||+.|+++||
T Consensus 190 ~l~~~~~~v~~vGDg-~nD~~al~~Ag 215 (215)
T PF00702_consen 190 ELQVKPGEVAMVGDG-VNDAPALKAAG 215 (215)
T ss_dssp HHTCTGGGEEEEESS-GGHHHHHHHSS
T ss_pred HHhcCCCEEEEEccC-HHHHHHHHhCc
Confidence 999999999999999 69999999997
No 125
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=98.19 E-value=1.6e-05 Score=65.55 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=31.9
Q ss_pred cCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCC
Q 022007 223 VGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGC 264 (304)
Q Consensus 223 ~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~ 264 (304)
.+.++++.++.+++.+ +++++||||+ .+|+.+|+++++
T Consensus 146 ~g~~K~~~~~~~~~~~---~~~~i~iGD~-~~D~~aa~~~d~ 183 (188)
T TIGR01489 146 CGCCKGKVIHKLSEPK---YQHIIYIGDG-VTDVCPAKLSDV 183 (188)
T ss_pred CCCCHHHHHHHHHhhc---CceEEEECCC-cchhchHhcCCc
Confidence 3455588899888765 7899999999 899999999973
No 126
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.17 E-value=2.8e-05 Score=60.43 Aligned_cols=118 Identities=21% Similarity=0.202 Sum_probs=77.0
Q ss_pred CccEEEEecCCCCC-------HHHHHHHHHHHHcC-C-CceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCccc
Q 022007 153 NVGAVVVGLDPHIN-------YYKLQYGTLCIREN-P-GCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVV 223 (304)
Q Consensus 153 ~~~~v~~~~~~~~~-------~~~~~~~l~~l~~~-~-~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~ 223 (304)
.+.+|+...|..++ |+......+.++.. + ...++++|.-... .....+..+..++.-+|......
T Consensus 42 ~ikavVlDKDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~------~~D~d~s~Ak~le~k~gIpVlRH 115 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLT------EYDHDDSKAKALEAKIGIPVLRH 115 (190)
T ss_pred CceEEEEcCCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCcCcc------ccCCchHHHHHHHHhhCCceEee
Confidence 56677776665332 22222223333321 0 2356778854411 22335678899999999888666
Q ss_pred CCCcHHHHHHHHHH-cC----CCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCc
Q 022007 224 GKPSTFMMEILSKK-FQ----IASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQ 276 (304)
Q Consensus 224 gKP~~~~~~~al~~-lg----~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~ 276 (304)
.+-+|..-....++ +| ..+++++||||++.+||.+|+..|-.++|...|....
T Consensus 116 s~kKP~ct~E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv~~~ 173 (190)
T KOG2961|consen 116 SVKKPACTAEEVEYHFGNSHVCTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGVRAE 173 (190)
T ss_pred cccCCCccHHHHHHHhCCcccCChhHeEEEccchhhhHhhhhhccceeEEeccccccc
Confidence 55555444444443 34 5789999999999999999999999999999887654
No 127
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=98.12 E-value=2.1e-05 Score=65.75 Aligned_cols=44 Identities=18% Similarity=0.128 Sum_probs=38.8
Q ss_pred cCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEE
Q 022007 223 VGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTL 267 (304)
Q Consensus 223 ~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti 267 (304)
.++++...++.++++.++++++++++||+ .+|+.+++.+|...+
T Consensus 152 ~g~~K~~~l~~~~~~~~~~~~~~~~~gDs-~~D~~~~~~a~~~~~ 195 (202)
T TIGR01490 152 KGEGKVHALAELLAEEQIDLKDSYAYGDS-ISDLPLLSLVGHPYV 195 (202)
T ss_pred CChHHHHHHHHHHHHcCCCHHHcEeeeCC-cccHHHHHhCCCcEE
Confidence 35677888999999999999999999999 899999999996554
No 128
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.11 E-value=6.8e-06 Score=71.62 Aligned_cols=71 Identities=15% Similarity=0.261 Sum_probs=58.8
Q ss_pred hhhccCEEEEeE--EEEcCCcc----CccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHH
Q 022007 21 LFDSVDAFLFDC--VIWKGDKL----IDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFA 94 (304)
Q Consensus 21 ~~~~~k~i~fDi--tL~~~~~~----~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~ 94 (304)
...-.+.|+||+ ||++.... -||+.++|++|+++|++++++|| .+++.....|+++|++-..+.|++++..
T Consensus 122 ~~~~~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS---~~Re~v~~~L~~lGLd~YFdvIIs~Gdv 198 (301)
T TIGR01684 122 VFEPPHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSY---GDRDHVVESMRKVKLDRYFDIIISGGHK 198 (301)
T ss_pred ccccceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEEC---CCHHHHHHHHHHcCCCcccCEEEECCcc
Confidence 456788999999 99988764 38999999999999999999999 5677777899999998666666665544
No 129
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.04 E-value=0.00033 Score=70.78 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=44.4
Q ss_pred ccCEEEEeE--EEEcCC----ccCccHHHHHHHH-HHCCCcEEEEeCCCCcCHHHHHHHHHhC
Q 022007 24 SVDAFLFDC--VIWKGD----KLIDGVRQTLDVL-RSKGKKLIFVTNNSRRSRRQYAHKFHSL 79 (304)
Q Consensus 24 ~~k~i~fDi--tL~~~~----~~~~~a~eal~~L-~~~G~~~~i~Tn~s~r~~~~~~~~l~~l 79 (304)
+.++|++|+ ||.... .+.|+..++|++| ++.|..++++|+ |+..++.+.+...
T Consensus 595 ~~rlI~LDyDGTLlp~~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSG---R~~~~L~~~f~~~ 654 (854)
T PLN02205 595 TTRAILLDYDGTLMPQASIDKSPSSKSIDILNTLCRDKNNMVFIVSA---RSRKTLADWFSPC 654 (854)
T ss_pred cCeEEEEecCCcccCCccccCCCCHHHHHHHHHHHhcCCCEEEEEeC---CCHHHHHHHhCCC
Confidence 468999999 999543 4556789999998 678999999999 9999999998654
No 130
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=98.03 E-value=7e-05 Score=76.40 Aligned_cols=67 Identities=19% Similarity=0.139 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEE--CCHHHHHHhhh
Q 022007 228 TFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYT--NQVSDILELLG 303 (304)
Q Consensus 228 ~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~--~~l~el~~~l~ 303 (304)
|+--..+.+.+.-..+.+.|+||+ .||+.++++|+ ++|.+|.+. .++.. ..+|+++ +++..+...+.
T Consensus 603 P~~K~~iv~~lq~~g~~v~mvGDG-vND~pAl~~Ad---VGia~g~~g-~~va~----~aaDivl~dd~~~~i~~~i~ 671 (884)
T TIGR01522 603 PEHKMKIVKALQKRGDVVAMTGDG-VNDAPALKLAD---IGVAMGQTG-TDVAK----EAADMILTDDDFATILSAIE 671 (884)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCC-cccHHHHHhCC---eeEecCCCc-CHHHH----HhcCEEEcCCCHHHHHHHHH
Confidence 333344444444445789999999 89999999999 899999642 23332 2689999 67999887653
No 131
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=98.00 E-value=6.2e-05 Score=65.71 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=28.2
Q ss_pred HHHHHHHHHcC--CCCCcEEEEcCCchhhHHHHHHc
Q 022007 229 FMMEILSKKFQ--IASSRMCMVGDRLDTDILFGQNA 262 (304)
Q Consensus 229 ~~~~~al~~lg--~~~~~~~~IGD~~~~Di~~a~~a 262 (304)
.+++.+.+.++ .++++|++|||+ .+|+.||.-.
T Consensus 196 ~v~~~~~~~~~~~~~~~~vI~vGDs-~~Dl~ma~g~ 230 (277)
T TIGR01544 196 DVALRNTEYFNQLKDRSNIILLGDS-QGDLRMADGV 230 (277)
T ss_pred HHHHHHHHHhCccCCcceEEEECcC-hhhhhHhcCC
Confidence 55667888888 899999999999 8999997655
No 132
>PLN02423 phosphomannomutase
Probab=98.00 E-value=0.00013 Score=63.21 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=42.3
Q ss_pred hccCEEE-EeE--EEEcCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHh
Q 022007 23 DSVDAFL-FDC--VIWKGDK-LIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHS 78 (304)
Q Consensus 23 ~~~k~i~-fDi--tL~~~~~-~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~ 78 (304)
.+++.++ ||+ ||+++++ +.+.+.++|++|+++ ++++++|+ |+...+.+.+..
T Consensus 4 ~~~~~i~~~D~DGTLl~~~~~i~~~~~~ai~~l~~~-i~fviaTG---R~~~~~~~~~~~ 59 (245)
T PLN02423 4 RKPGVIALFDVDGTLTAPRKEATPEMLEFMKELRKV-VTVGVVGG---SDLSKISEQLGK 59 (245)
T ss_pred CccceEEEEeccCCCcCCCCcCCHHHHHHHHHHHhC-CEEEEECC---cCHHHHHHHhcc
Confidence 4677666 999 9998876 455789999999977 99999999 777777777654
No 133
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=97.95 E-value=5.8e-05 Score=73.17 Aligned_cols=112 Identities=14% Similarity=0.080 Sum_probs=74.2
Q ss_pred CCCCHHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCccc--CCCcHHHHHHHHHHcC
Q 022007 163 PHINYYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVV--GKPSTFMMEILSKKFQ 239 (304)
Q Consensus 163 ~~~~~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~--gKP~~~~~~~al~~lg 239 (304)
....++++.+.++.|+++ |.+ .++|+.... ....+-..+|.+.... .+++++.++.+ .
T Consensus 403 ~d~l~~~a~e~i~~Lk~~-Gi~v~ilSgd~~~--------------~a~~ia~~lgi~~~~~~~p~~K~~~v~~l----~ 463 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRR-GIEPVMLTGDNRK--------------TAKAVAKELGINVRAEVLPDDKAALIKEL----Q 463 (562)
T ss_pred cccccHHHHHHHHHHHHc-CCeEEEEcCCCHH--------------HHHHHHHHcCCcEEccCChHHHHHHHHHH----H
Confidence 345689999999999987 665 567776551 1222222233332111 23344554444 3
Q ss_pred CCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEE--CCHHHHHHhhh
Q 022007 240 IASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYT--NQVSDILELLG 303 (304)
Q Consensus 240 ~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~--~~l~el~~~l~ 303 (304)
.++++++||||+ .+|+.+++++| ++|.+|.+.. +.. ..+|+++ +++.++.+++.
T Consensus 464 ~~~~~v~~VGDg-~nD~~al~~A~---vgia~g~g~~--~a~----~~Advvl~~~~l~~l~~~i~ 519 (562)
T TIGR01511 464 EKGRVVAMVGDG-INDAPALAQAD---VGIAIGAGTD--VAI----EAADVVLMRNDLNDVATAID 519 (562)
T ss_pred HcCCEEEEEeCC-CccHHHHhhCC---EEEEeCCcCH--HHH----hhCCEEEeCCCHHHHHHHHH
Confidence 367899999999 89999999999 7899997542 222 2689988 58888877653
No 134
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=97.94 E-value=0.0001 Score=71.45 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=73.9
Q ss_pred CCCCHHHHHHHHHHHHcCCC-ce-EEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcc---cCCCcHHHHHHHHHH
Q 022007 163 PHINYYKLQYGTLCIRENPG-CL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIV---VGKPSTFMMEILSKK 237 (304)
Q Consensus 163 ~~~~~~~~~~~l~~l~~~~~-~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~---~gKP~~~~~~~al~~ 237 (304)
....|+++.+.++.|+++ | .+ .++||..... ...+-..+|.+... ..++++..+ ++
T Consensus 382 ~d~~~~g~~e~l~~L~~~-g~i~v~ivTgd~~~~--------------a~~i~~~lgi~~~f~~~~p~~K~~~v----~~ 442 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRA-GGIKLVMLTGDNRSA--------------AEAVAAELGIDEVHAELLPEDKLAIV----KE 442 (556)
T ss_pred cccchHhHHHHHHHHHHc-CCCeEEEEeCCCHHH--------------HHHHHHHhCCCeeeccCCHHHHHHHH----HH
Confidence 456799999999999987 6 54 6788866521 22222233332211 112334444 44
Q ss_pred cCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEEC--CHHHHHHhh
Q 022007 238 FQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTN--QVSDILELL 302 (304)
Q Consensus 238 lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~--~l~el~~~l 302 (304)
++..+++++||||+ .+|+.+++++| ++|.+|.+.. ... ..+|+++. ++..+.+++
T Consensus 443 l~~~~~~v~~vGDg-~nD~~al~~A~---vgia~g~~~~--~~~----~~Ad~vi~~~~~~~l~~~i 499 (556)
T TIGR01525 443 LQEEGGVVAMVGDG-INDAPALAAAD---VGIAMGAGSD--VAI----EAADIVLLNDDLSSLPTAI 499 (556)
T ss_pred HHHcCCEEEEEECC-hhHHHHHhhCC---EeEEeCCCCH--HHH----HhCCEEEeCCCHHHHHHHH
Confidence 44467799999999 89999999999 8999995432 221 26899887 788887765
No 135
>PLN03017 trehalose-phosphatase
Probab=97.93 E-value=0.00096 Score=60.51 Aligned_cols=64 Identities=19% Similarity=0.167 Sum_probs=48.0
Q ss_pred CccccchhhHHHhhhccC-EEEEeE--EEE---c-CC--ccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHH
Q 022007 9 PAELLSANNITALFDSVD-AFLFDC--VIW---K-GD--KLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKF 76 (304)
Q Consensus 9 ~~~~~~~~~~~~~~~~~k-~i~fDi--tL~---~-~~--~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l 76 (304)
|.++...+.+.+.....+ ++|||+ ||. + .+ .+.++..++|++|. +|.+++|+|+ |+...+.+.+
T Consensus 94 psal~~~~~~~~~~~~k~~llflD~DGTL~Piv~~p~~a~i~~~~~~aL~~La-~~~~vaIvSG---R~~~~l~~~~ 166 (366)
T PLN03017 94 PSALEMFEQIMEASRGKQIVMFLDYDGTLSPIVDDPDKAFMSSKMRRTVKKLA-KCFPTAIVTG---RCIDKVYNFV 166 (366)
T ss_pred ChHHHHHHHHHHHhcCCCeEEEEecCCcCcCCcCCcccccCCHHHHHHHHHHh-cCCcEEEEeC---CCHHHHHHhh
Confidence 444555666666666544 567899 999 3 33 36677899999999 7899999999 8988888763
No 136
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.85 E-value=0.00015 Score=59.07 Aligned_cols=104 Identities=16% Similarity=0.204 Sum_probs=68.4
Q ss_pred hccCEEEEeE--EEEcC--CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHHHHHH
Q 022007 23 DSVDAFLFDC--VIWKG--DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFAAAMY 98 (304)
Q Consensus 23 ~~~k~i~fDi--tL~~~--~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~ 98 (304)
..++++++|+ ||+.. ..++|++.++|+.|+++|++++++||++. .......++.+|+.......-.........
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~--~~~~~~~~~~~gl~~~~~~~KP~p~~~~~~ 100 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDHNEAYPALRDWIEELKAAGRKLLIVSNNAG--EQRAKAVEKALGIPVLPHAVKPPGCAFRRA 100 (170)
T ss_pred CCCCEEEEecCCccccCCCCCcChhHHHHHHHHHHcCCEEEEEeCCch--HHHHHHHHHHcCCEEEcCCCCCChHHHHHH
Confidence 4789999999 88843 36899999999999999999999999542 222333445677763222111222333445
Q ss_pred HHhCCCCCCCeEEEEcChh--HHHHHHHcCCcc
Q 022007 99 LKVNNFPQENKVYVIGGEG--ILEELRQAGYTG 129 (304)
Q Consensus 99 l~~~~~~~~~~v~~~g~~~--~~~~l~~~g~~~ 129 (304)
+++.++.+ ..++++|-.. .....+.+|+..
T Consensus 101 l~~~~~~~-~~~l~IGDs~~~Di~aA~~aGi~~ 132 (170)
T TIGR01668 101 HPEMGLTS-EQVAVVGDRLFTDVMGGNRNGSYT 132 (170)
T ss_pred HHHcCCCH-HHEEEECCcchHHHHHHHHcCCeE
Confidence 56666543 4577777654 456667778754
No 137
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=97.85 E-value=4.6e-05 Score=66.03 Aligned_cols=47 Identities=17% Similarity=0.326 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCcc
Q 022007 227 STFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQS 277 (304)
Q Consensus 227 ~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~ 277 (304)
+...++++++++++++++++.+||| .||+.|. ..+..+|.| |+..++
T Consensus 166 K~~Al~~L~~~~~~~~~~vl~aGDS-gND~~mL-~~~~~~vvV--~Na~~e 212 (247)
T PF05116_consen 166 KGAALRYLMERWGIPPEQVLVAGDS-GNDLEML-EGGDHGVVV--GNAQPE 212 (247)
T ss_dssp HHHHHHHHHHHHT--GGGEEEEESS-GGGHHHH-CCSSEEEE---TTS-HH
T ss_pred HHHHHHHHHHHhCCCHHHEEEEeCC-CCcHHHH-cCcCCEEEE--cCCCHH
Confidence 3888999999999999999999999 9999999 566666655 555544
No 138
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=97.83 E-value=0.0001 Score=57.85 Aligned_cols=60 Identities=22% Similarity=0.373 Sum_probs=43.8
Q ss_pred HhhhccCEEEEeE--EEEcCCccCcc---------H--HHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 20 ALFDSVDAFLFDC--VIWKGDKLIDG---------V--RQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 20 ~~~~~~k~i~fDi--tL~~~~~~~~~---------a--~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
+-+.++|.++||+ ||-++.-.+.. + --.|+.|.+.|+++.|+|+ |...-+.++.++||++
T Consensus 3 ~ra~~IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv~DG~Gik~l~~~Gi~vAIITG---r~s~ive~Ra~~LGI~ 75 (170)
T COG1778 3 ARAKNIKLLILDVDGVLTDGKLYYDENGEEIKAFNVRDGHGIKLLLKSGIKVAIITG---RDSPIVEKRAKDLGIK 75 (170)
T ss_pred hhhhhceEEEEeccceeecCeEEEcCCCceeeeeeccCcHHHHHHHHcCCeEEEEeC---CCCHHHHHHHHHcCCc
Confidence 3467899999999 87765432211 1 2578889999999999999 7766666777777764
No 139
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=97.82 E-value=4.4e-05 Score=66.68 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=57.1
Q ss_pred hhccCEEEEeE--EEEcCCcc----CccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHHH
Q 022007 22 FDSVDAFLFDC--VIWKGDKL----IDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFAA 95 (304)
Q Consensus 22 ~~~~k~i~fDi--tL~~~~~~----~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~ 95 (304)
..-.+.++||+ ||.+.... -|++.++|.+|+++|++++++|| .+++.....|+.+|++-..+.++.++...
T Consensus 125 ~~~~~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTN---g~Re~v~~~Le~lgL~~yFDvII~~g~i~ 201 (303)
T PHA03398 125 WEIPHVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSY---GNREHVVHSLKETKLEGYFDIIICGGRKA 201 (303)
T ss_pred eeeccEEEEecCCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcC---CChHHHHHHHHHcCCCccccEEEECCCcc
Confidence 34578999999 99987764 48999999999999999999999 46667788899999986556566555443
No 140
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=97.79 E-value=0.00025 Score=57.83 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=32.8
Q ss_pred CCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHc
Q 022007 224 GKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNA 262 (304)
Q Consensus 224 gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~a 262 (304)
+..++..++.+++.++++++++++|||+ .+|+.+++.+
T Consensus 140 ~~~K~~~l~~~~~~~~~~~~~~~~iGDs-~~D~~~~~~a 177 (177)
T TIGR01488 140 GECKGKVLKELLEESKITLKKIIAVGDS-VNDLPMLKLA 177 (177)
T ss_pred cchHHHHHHHHHHHhCCCHHHEEEEeCC-HHHHHHHhcC
Confidence 3445788888889999999999999999 9999999864
No 141
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.77 E-value=0.00019 Score=72.98 Aligned_cols=117 Identities=12% Similarity=0.090 Sum_probs=78.5
Q ss_pred CCCCHHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCC
Q 022007 163 PHINYYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIA 241 (304)
Q Consensus 163 ~~~~~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~ 241 (304)
....++++.+.++.|++. |.+ .++|+.... ....+....|.+....+ ..|+.-..+++.++.+
T Consensus 648 ~d~~r~~a~~~i~~L~~~-gi~v~~~Tgd~~~--------------~a~~ia~~lgi~~~~~~-~~p~~K~~~i~~l~~~ 711 (834)
T PRK10671 648 RDPLRSDSVAALQRLHKA-GYRLVMLTGDNPT--------------TANAIAKEAGIDEVIAG-VLPDGKAEAIKRLQSQ 711 (834)
T ss_pred cCcchhhHHHHHHHHHHC-CCeEEEEcCCCHH--------------HHHHHHHHcCCCEEEeC-CCHHHHHHHHHHHhhc
Confidence 345688899999999887 776 556665441 12223333444322111 1233344566777778
Q ss_pred CCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhhh
Q 022007 242 SSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELLG 303 (304)
Q Consensus 242 ~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l~ 303 (304)
+++++||||+ .+|+.+++++| ++|.||+++...+.. ..+....+++.++..+++
T Consensus 712 ~~~v~~vGDg-~nD~~al~~Ag---vgia~g~g~~~a~~~----ad~vl~~~~~~~i~~~i~ 765 (834)
T PRK10671 712 GRQVAMVGDG-INDAPALAQAD---VGIAMGGGSDVAIET----AAITLMRHSLMGVADALA 765 (834)
T ss_pred CCEEEEEeCC-HHHHHHHHhCC---eeEEecCCCHHHHHh----CCEEEecCCHHHHHHHHH
Confidence 8899999999 89999999999 799999876554442 245556788998887764
No 142
>PLN02151 trehalose-phosphatase
Probab=97.76 E-value=0.0025 Score=57.66 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=46.0
Q ss_pred cccchhhHHHhhhc-cCEEEEeE--EEE----cCC--ccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHH
Q 022007 11 ELLSANNITALFDS-VDAFLFDC--VIW----KGD--KLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFH 77 (304)
Q Consensus 11 ~~~~~~~~~~~~~~-~k~i~fDi--tL~----~~~--~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~ 77 (304)
++-+.+.+...... --++|||+ ||. +.. .+.|+..++|+.|. ++.+++|+|+ |+...+.+.+.
T Consensus 83 a~~~~~~~~~~~~~~~~ll~lDyDGTL~PIv~~P~~A~~~~~~~~aL~~La-~~~~vaIvSG---R~~~~l~~~~~ 154 (354)
T PLN02151 83 ALNMFEEILHKSEGKQIVMFLDYDGTLSPIVDDPDRAFMSKKMRNTVRKLA-KCFPTAIVSG---RCREKVSSFVK 154 (354)
T ss_pred HHHHHHHHHHhhcCCceEEEEecCccCCCCCCCcccccCCHHHHHHHHHHh-cCCCEEEEEC---CCHHHHHHHcC
Confidence 34444555555443 34778899 998 333 36667899999999 5579999999 99999888764
No 143
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.75 E-value=0.00044 Score=59.35 Aligned_cols=120 Identities=18% Similarity=0.312 Sum_probs=72.8
Q ss_pred CCCccccchhhHHHhhhccC--EEEEeE--EEEcCCc--------c-------------------------Ccc--HHHH
Q 022007 7 QAPAELLSANNITALFDSVD--AFLFDC--VIWKGDK--------L-------------------------IDG--VRQT 47 (304)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~k--~i~fDi--tL~~~~~--------~-------------------------~~~--a~ea 47 (304)
|+|--..|.+++++=+..-+ +|+||+ ||+++.. + +|+ |.++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~el 122 (237)
T TIGR01672 43 QAPIHWISVAQIENSLEGRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQL 122 (237)
T ss_pred cCCeeEEEHHHHHHhcCCCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHH
Confidence 34434467778876666665 999999 8886433 0 233 8899
Q ss_pred HHHHHHCCCcEEEEeCCCCc-CHHHHHHHHHhCCCccCCCCeechHHH------HHHHHHhCCCCCCCeEEEEcChhHHH
Q 022007 48 LDVLRSKGKKLIFVTNNSRR-SRRQYAHKFHSLGVSVSEDEIFSSSFA------AAMYLKVNNFPQENKVYVIGGEGILE 120 (304)
Q Consensus 48 l~~L~~~G~~~~i~Tn~s~r-~~~~~~~~l~~lG~~~~~~~i~~~~~~------~~~~l~~~~~~~~~~v~~~g~~~~~~ 120 (304)
|++|+++|++++++||.+.. ........++.+|++...+.++++... -..++.+.++ .+++-.+.....
T Consensus 123 L~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~~~l~~~~i----~i~vGDs~~DI~ 198 (237)
T TIGR01672 123 IDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKTQWIQDKNI----RIHYGDSDNDIT 198 (237)
T ss_pred HHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHHHHHHhCCC----eEEEeCCHHHHH
Confidence 99999999999999994322 333444455679997444444432110 1134554442 244433334456
Q ss_pred HHHHcCCccc
Q 022007 121 ELRQAGYTGL 130 (304)
Q Consensus 121 ~l~~~g~~~~ 130 (304)
..+++|+...
T Consensus 199 aAk~AGi~~I 208 (237)
T TIGR01672 199 AAKEAGARGI 208 (237)
T ss_pred HHHHCCCCEE
Confidence 6777786643
No 144
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=97.74 E-value=8.7e-05 Score=60.23 Aligned_cols=41 Identities=29% Similarity=0.362 Sum_probs=31.5
Q ss_pred CCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccC
Q 022007 224 GKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSG 272 (304)
Q Consensus 224 gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G 272 (304)
|| ++.+..+.+ +.+-+.++||||. .||+++...+- .|+..|
T Consensus 159 gK--a~~i~~lrk--~~~~~~~~mvGDG-atDlea~~pa~---afi~~~ 199 (227)
T KOG1615|consen 159 GK--AEVIALLRK--NYNYKTIVMVGDG-ATDLEAMPPAD---AFIGFG 199 (227)
T ss_pred cc--HHHHHHHHh--CCChheeEEecCC-ccccccCCchh---hhhccC
Confidence 55 777888777 7777899999999 99999877744 444443
No 145
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=97.71 E-value=9.1e-05 Score=56.96 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=34.9
Q ss_pred cCEEEEeE--EEEcCC-c------cCccHHHHHHHHHHCCCcEEEEeCCCCcC
Q 022007 25 VDAFLFDC--VIWKGD-K------LIDGVRQTLDVLRSKGKKLIFVTNNSRRS 68 (304)
Q Consensus 25 ~k~i~fDi--tL~~~~-~------~~~~a~eal~~L~~~G~~~~i~Tn~s~r~ 68 (304)
+|+|+||+ ||.+.+ . +.+.+.++|++|+++|+.++++|+.+.+.
T Consensus 1 ~K~i~~DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~ 53 (126)
T TIGR01689 1 MKRLVMDLDNTITLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRT 53 (126)
T ss_pred CCEEEEeCCCCcccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence 37999999 998642 2 45678999999999999999999943333
No 146
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=97.66 E-value=0.00048 Score=70.65 Aligned_cols=59 Identities=19% Similarity=0.176 Sum_probs=44.9
Q ss_pred HHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECC--HHHHHHhh
Q 022007 234 LSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQ--VSDILELL 302 (304)
Q Consensus 234 al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~--l~el~~~l 302 (304)
+.+.++-..+.+.|+||+ .||+.|.++|+ ++|.+|.++.. .+ ..+|+++.+ +..+.+++
T Consensus 622 iV~~lq~~g~~va~iGDG-~ND~~alk~Ad---VGia~g~g~~~-ak-----~aAD~vl~dd~f~~i~~~i 682 (917)
T TIGR01116 622 LVELLQEQGEIVAMTGDG-VNDAPALKKAD---IGIAMGSGTEV-AK-----EASDMVLADDNFATIVAAV 682 (917)
T ss_pred HHHHHHhcCCeEEEecCC-cchHHHHHhCC---eeEECCCCcHH-HH-----HhcCeEEccCCHHHHHHHH
Confidence 333444445789999999 89999999999 89999976432 22 269999977 88887765
No 147
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=97.66 E-value=0.00011 Score=58.99 Aligned_cols=49 Identities=22% Similarity=0.277 Sum_probs=40.6
Q ss_pred EEEEeE--EEEcCC------------ccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHH---HHHHh
Q 022007 27 AFLFDC--VIWKGD------------KLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYA---HKFHS 78 (304)
Q Consensus 27 ~i~fDi--tL~~~~------------~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~---~~l~~ 78 (304)
+|+||| ||.+++ ...|++.+++++|+++|++++++|+ |+..... ++|.+
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~~~~~~~~~~~~~a~~~l~~~G~~ivy~TG---Rp~~~~~~t~~~l~~ 66 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLYRDIQNNGYKILYLTA---RPIGQADRTRSYLSQ 66 (157)
T ss_pred CEEEecCCCCcccccccccccccccCcCCHHHHHHHHHHHHcCCeEEEEcC---CcHHHHHHHHHHHHH
Confidence 479999 999765 5788999999999999999999999 7776653 55555
No 148
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=97.64 E-value=0.00062 Score=57.55 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=34.9
Q ss_pred cHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeE
Q 022007 227 STFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKT 266 (304)
Q Consensus 227 ~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~t 266 (304)
+....+..++.+|+++++++++||+ .||+.|.+.+|...
T Consensus 145 K~~~l~~~~~~~g~~~~~~~a~gDs-~nDlpml~~ag~~i 183 (212)
T COG0560 145 KAKALRELAAELGIPLEETVAYGDS-ANDLPMLEAAGLPI 183 (212)
T ss_pred HHHHHHHHHHHcCCCHHHeEEEcCc-hhhHHHHHhCCCCe
Confidence 3677888999999999999999999 99999999999443
No 149
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=97.62 E-value=0.00042 Score=58.21 Aligned_cols=117 Identities=13% Similarity=-0.006 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHcCCCceEEEecCCCccCCCCCccccChHHHHHHHHH---------hhCCCCcccCCCcHHHHHHHHHH
Q 022007 167 YYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCA---------STEKEPIVVGKPSTFMMEILSKK 237 (304)
Q Consensus 167 ~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~---------~~~~~~~~~gKP~~~~~~~al~~ 237 (304)
++++.+.++.++++ +..+|+|+....... .+....++...+.. ++|. . ...||++..+...++.
T Consensus 70 ~pga~ell~~lk~~-~~~~IVS~~~~~~~~----~il~~lgi~~~~an~l~~~~~g~~tG~-~-~~~~~~K~~~l~~l~~ 142 (203)
T TIGR02137 70 LEGAVEFVDWLRER-FQVVILSDTFYEFSQ----PLMRQLGFPTLLCHKLEIDDSDRVVGY-Q-LRQKDPKRQSVIAFKS 142 (203)
T ss_pred CccHHHHHHHHHhC-CeEEEEeCChHHHHH----HHHHHcCCchhhceeeEEecCCeeECe-e-ecCcchHHHHHHHHHh
Confidence 67888888888876 656788887663211 11111111122210 0111 1 1345666555555566
Q ss_pred cCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcE-EECCHHHHHHhhh
Q 022007 238 FQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDY-YTNQVSDILELLG 303 (304)
Q Consensus 238 lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~-v~~~l~el~~~l~ 303 (304)
.+. ++++|||+ .+|+.|++.+|+..++. - .+.+.. ..|++ ++.+..|+.+.+.
T Consensus 143 ~~~---~~v~vGDs-~nDl~ml~~Ag~~ia~~---a--k~~~~~----~~~~~~~~~~~~~~~~~~~ 196 (203)
T TIGR02137 143 LYY---RVIAAGDS-YNDTTMLSEAHAGILFH---A--PENVIR----EFPQFPAVHTYEDLKREFL 196 (203)
T ss_pred hCC---CEEEEeCC-HHHHHHHHhCCCCEEec---C--CHHHHH----hCCCCCcccCHHHHHHHHH
Confidence 653 89999999 99999999999554433 2 122222 24555 7888999887653
No 150
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.61 E-value=0.00083 Score=57.61 Aligned_cols=119 Identities=19% Similarity=0.313 Sum_probs=69.8
Q ss_pred CCCccccchhhHHHhhhc-cC-EEEEeE--EEEcC-C----------------------------------ccCccHHHH
Q 022007 7 QAPAELLSANNITALFDS-VD-AFLFDC--VIWKG-D----------------------------------KLIDGVRQT 47 (304)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~-~k-~i~fDi--tL~~~-~----------------------------------~~~~~a~ea 47 (304)
|+|--..|.+++++-+.. -+ +|.||| |+++. . .+.||+++.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~el 122 (237)
T PRK11009 43 QAPVHWVSVAQIEKSLEGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQL 122 (237)
T ss_pred cCCeeEEEHHHhhhhccCCCCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHH
Confidence 334344666777655543 34 899999 77641 1 135569999
Q ss_pred HHHHHHCCCcEEEEeCCCCcCHHHHHHHHH-hCCCc--cCCCCeechHH----HHHHHHHhCCCCCCCeEEEEcChhHHH
Q 022007 48 LDVLRSKGKKLIFVTNNSRRSRRQYAHKFH-SLGVS--VSEDEIFSSSF----AAAMYLKVNNFPQENKVYVIGGEGILE 120 (304)
Q Consensus 48 l~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~-~lG~~--~~~~~i~~~~~----~~~~~l~~~~~~~~~~v~~~g~~~~~~ 120 (304)
|++|+++|++++++||.+....+...+.|. .+|++ -..+.+++... .-..++.+.+. .+++-.+.....
T Consensus 123 L~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~~K~~K~~~l~~~~i----~I~IGDs~~Di~ 198 (237)
T PRK11009 123 IDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDKPGQYTKTQWLKKKNI----RIFYGDSDNDIT 198 (237)
T ss_pred HHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCCCCCCCHHHHHHhcCC----eEEEcCCHHHHH
Confidence 999999999999999943223455556555 49994 22233333210 01234554443 244433334456
Q ss_pred HHHHcCCcc
Q 022007 121 ELRQAGYTG 129 (304)
Q Consensus 121 ~l~~~g~~~ 129 (304)
..+++|+..
T Consensus 199 aA~~AGi~~ 207 (237)
T PRK11009 199 AAREAGARG 207 (237)
T ss_pred HHHHcCCcE
Confidence 677777664
No 151
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=97.58 E-value=0.00026 Score=61.73 Aligned_cols=51 Identities=22% Similarity=0.425 Sum_probs=42.0
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCcc-CCCCeec
Q 022007 40 LIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSV-SEDEIFS 90 (304)
Q Consensus 40 ~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~-~~~~i~~ 90 (304)
++||+.++|+.|+++|++++++||++...++...+.|+.+|++. ..+.+++
T Consensus 119 ~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lll 170 (266)
T TIGR01533 119 PVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLL 170 (266)
T ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEe
Confidence 47999999999999999999999976666777788999999984 4454443
No 152
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=97.53 E-value=0.00026 Score=57.38 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCC
Q 022007 227 STFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTT 275 (304)
Q Consensus 227 ~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~ 275 (304)
+...|+.+.+..|++.+++++|-|. ...+.-.++.|+.+++|..|.+.
T Consensus 109 K~~Hf~~i~~~tgI~y~eMlFFDDe-~~N~~~v~~lGV~~v~v~~Glt~ 156 (169)
T PF12689_consen 109 KTTHFRRIHRKTGIPYEEMLFFDDE-SRNIEVVSKLGVTCVLVPDGLTW 156 (169)
T ss_dssp HHHHHHHHHHHH---GGGEEEEES--HHHHHHHHTTT-EEEE-SSS--H
T ss_pred hHHHHHHHHHhcCCChhHEEEecCc-hhcceeeEecCcEEEEeCCCCCH
Confidence 4777999999999999999999999 89999999999999999888654
No 153
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=97.50 E-value=0.0015 Score=49.79 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCC-cccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEP-IVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.|+.+.+.++.|.+. +.+++.+.|+ .|++.+ +...+|.+. ....--++++=..+++.|+-+-+.
T Consensus 31 lf~ev~e~iqeL~d~--V~i~IASgDr------------~gsl~~-lae~~gi~~~rv~a~a~~e~K~~ii~eLkk~~~k 95 (152)
T COG4087 31 LFSEVSETIQELHDM--VDIYIASGDR------------KGSLVQ-LAEFVGIPVERVFAGADPEMKAKIIRELKKRYEK 95 (152)
T ss_pred EcHhhHHHHHHHHHh--heEEEecCCc------------chHHHH-HHHHcCCceeeeecccCHHHHHHHHHHhcCCCcE
Confidence 367888888888874 6666666555 133333 333444443 233445678888888888877789
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhhh
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELLG 303 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l~ 303 (304)
++||||. .||+.+.+++-+--+-+-.+..+...+. .+|+++.+..|+++++.
T Consensus 96 ~vmVGnG-aND~laLr~ADlGI~tiq~e~v~~r~l~------~ADvvik~i~e~ldl~~ 147 (152)
T COG4087 96 VVMVGNG-ANDILALREADLGICTIQQEGVPERLLL------TADVVLKEIAEILDLLK 147 (152)
T ss_pred EEEecCC-cchHHHhhhcccceEEeccCCcchHHHh------hchhhhhhHHHHHHHhh
Confidence 9999999 9999999999844333332322222222 68999999999998764
No 154
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=97.48 E-value=0.00027 Score=59.96 Aligned_cols=58 Identities=16% Similarity=0.268 Sum_probs=46.5
Q ss_pred hccCEEEEeE--EEEcC---------------------------CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHH--
Q 022007 23 DSVDAFLFDC--VIWKG---------------------------DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQ-- 71 (304)
Q Consensus 23 ~~~k~i~fDi--tL~~~---------------------------~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~-- 71 (304)
+..++++||+ |+++. ..++|++.+++++|+++|+.++++|| |+...
T Consensus 75 dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTG---R~e~~r~ 151 (229)
T TIGR01675 75 DGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSG---RWEELRN 151 (229)
T ss_pred CCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcC---CChHHHH
Confidence 4678999999 66531 12588999999999999999999999 66544
Q ss_pred -HHHHHHhCCCcc
Q 022007 72 -YAHKFHSLGVSV 83 (304)
Q Consensus 72 -~~~~l~~lG~~~ 83 (304)
..+.|.+.||+.
T Consensus 152 ~T~~nL~~~G~~~ 164 (229)
T TIGR01675 152 ATLDNLINAGFTG 164 (229)
T ss_pred HHHHHHHHcCCCC
Confidence 667888899874
No 155
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=97.34 E-value=0.0011 Score=53.32 Aligned_cols=104 Identities=10% Similarity=0.077 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHcCCCceEEE-ecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGCLFIA-TNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~~i~-tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.|++....++.-+.. |.++++ +........ .--.....|.+..+|+..++. ..-.|-...-|..++...|++|.+
T Consensus 104 lypDav~~ik~wk~~-g~~vyiYSSGSV~AQk-L~Fghs~agdL~~lfsGyfDt--tiG~KrE~~SY~kIa~~iGl~p~e 179 (229)
T COG4229 104 LYPDAVQAIKRWKAL-GMRVYIYSSGSVKAQK-LFFGHSDAGDLNSLFSGYFDT--TIGKKRESQSYAKIAGDIGLPPAE 179 (229)
T ss_pred cCHhHHHHHHHHHHc-CCcEEEEcCCCchhHH-HhhcccccccHHhhhcceeec--cccccccchhHHHHHHhcCCCchh
Confidence 488877777766665 776444 443331110 000112345555555554433 333566678899999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCeEEEEcc-CCC
Q 022007 245 MCMVGDRLDTDILFGQNAGCKTLLVLS-GVT 274 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~~aG~~ti~V~~-G~~ 274 (304)
++++.|+ ...+.+|+.+||.|+++.+ |+.
T Consensus 180 ilFLSDn-~~EL~AA~~vGl~t~l~~R~g~~ 209 (229)
T COG4229 180 ILFLSDN-PEELKAAAGVGLATGLAVRPGNA 209 (229)
T ss_pred eEEecCC-HHHHHHHHhcchheeeeecCCCC
Confidence 9999999 7999999999999998854 543
No 156
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.28 E-value=0.0023 Score=53.29 Aligned_cols=90 Identities=17% Similarity=0.209 Sum_probs=60.4
Q ss_pred cCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHH---------HHHHHHhCCCCC
Q 022007 36 KGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFA---------AAMYLKVNNFPQ 106 (304)
Q Consensus 36 ~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~---------~~~~l~~~~~~~ 106 (304)
..-.++||+.++|+.|+++|+++.++|| .+...+...++.+|+.-..+.++++... ....+...++.+
T Consensus 89 ~~~~~~~~~~~~L~~L~~~g~~~~i~Sn---~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p 165 (198)
T TIGR01428 89 LRLPPHPDVPAGLRALKERGYRLAILSN---GSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPP 165 (198)
T ss_pred hcCCCCCCHHHHHHHHHHCCCeEEEEeC---CCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCCh
Confidence 3346889999999999999999999999 4566777788889987556667765432 122334455544
Q ss_pred CCeEEEEcCh-hHHHHHHHcCCcc
Q 022007 107 ENKVYVIGGE-GILEELRQAGYTG 129 (304)
Q Consensus 107 ~~~v~~~g~~-~~~~~l~~~g~~~ 129 (304)
.. ++++|-. .-....++.|++.
T Consensus 166 ~~-~~~vgD~~~Di~~A~~~G~~~ 188 (198)
T TIGR01428 166 DE-VLFVASNPWDLGGAKKFGFKT 188 (198)
T ss_pred hh-EEEEeCCHHHHHHHHHCCCcE
Confidence 33 4444433 3345566777654
No 157
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.22 E-value=0.0031 Score=56.11 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=44.8
Q ss_pred cCEEEEeE--EEEc-------------CCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCC
Q 022007 25 VDAFLFDC--VIWK-------------GDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLG 80 (304)
Q Consensus 25 ~k~i~fDi--tL~~-------------~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG 80 (304)
.+.++||+ ||.. ...++|++.++|++|+++|++++++||.+......+.+.|...|
T Consensus 158 ~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~ 228 (300)
T PHA02530 158 PKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTD 228 (300)
T ss_pred CCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcC
Confidence 57899999 8875 34689999999999999999999999966555566666655554
No 158
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=97.15 E-value=0.0035 Score=52.50 Aligned_cols=89 Identities=22% Similarity=0.277 Sum_probs=59.6
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechH---------HHHHHHHHhCCCCCC
Q 022007 37 GDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSS---------FAAAMYLKVNNFPQE 107 (304)
Q Consensus 37 ~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~---------~~~~~~l~~~~~~~~ 107 (304)
...++||+.+.|+.|+++|++++++|| .+...+...++.+|+.-..+.++++. ......++..++.+.
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn---~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~ 149 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATG---KSGPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPE 149 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeC---CchHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChh
Confidence 346899999999999999999999999 45556667788888864445555432 222334445565443
Q ss_pred CeEEEEcCh-hHHHHHHHcCCcc
Q 022007 108 NKVYVIGGE-GILEELRQAGYTG 129 (304)
Q Consensus 108 ~~v~~~g~~-~~~~~l~~~g~~~ 129 (304)
.++++|-. .-.+..++.|+..
T Consensus 150 -~~l~igD~~~Di~aA~~~Gi~~ 171 (205)
T TIGR01454 150 -DAVMVGDAVTDLASARAAGTAT 171 (205)
T ss_pred -heEEEcCCHHHHHHHHHcCCeE
Confidence 34555543 4456777778765
No 159
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.05 E-value=0.004 Score=53.92 Aligned_cols=90 Identities=18% Similarity=0.114 Sum_probs=61.3
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHH---------HHHHHHhCCCCCCC
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFA---------AAMYLKVNNFPQEN 108 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~---------~~~~l~~~~~~~~~ 108 (304)
..++||+.+.|+.|+++|+++.|+|| .+...+...|+.+|+.-.++.++++... ....+...++.+..
T Consensus 107 ~~l~pgv~e~L~~L~~~g~~l~I~Tn---~~~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 183 (248)
T PLN02770 107 LKPLNGLYKLKKWIEDRGLKRAAVTN---APRENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDH 183 (248)
T ss_pred CCcCccHHHHHHHHHHcCCeEEEEeC---CCHHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCChhH
Confidence 45899999999999999999999999 5677788889999987555666655421 22233444554433
Q ss_pred eEEEEcChhHHHHHHHcCCccc
Q 022007 109 KVYVIGGEGILEELRQAGYTGL 130 (304)
Q Consensus 109 ~v~~~g~~~~~~~l~~~g~~~~ 130 (304)
.+++-.+..-.+..+++|+..+
T Consensus 184 ~l~vgDs~~Di~aA~~aGi~~i 205 (248)
T PLN02770 184 TFVFEDSVSGIKAGVAAGMPVV 205 (248)
T ss_pred EEEEcCCHHHHHHHHHCCCEEE
Confidence 3333333444566677787653
No 160
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=97.03 E-value=0.0035 Score=53.24 Aligned_cols=90 Identities=11% Similarity=0.073 Sum_probs=61.1
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHH---------HHHHHHHhCCCCCC
Q 022007 37 GDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSF---------AAAMYLKVNNFPQE 107 (304)
Q Consensus 37 ~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~---------~~~~~l~~~~~~~~ 107 (304)
...++||+.+.|+.|+++|++++++|| .+...+...++.+|++-..+.++++.. .....+...|+.+.
T Consensus 90 ~~~~~~g~~~~l~~l~~~g~~~~i~S~---~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~ 166 (222)
T PRK10826 90 TRPLLPGVREALALCKAQGLKIGLASA---SPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDPL 166 (222)
T ss_pred CCCCCCCHHHHHHHHHHCCCeEEEEeC---CcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCHH
Confidence 346899999999999999999999999 456666677888888755566654322 23344555566543
Q ss_pred CeEEEEcC-hhHHHHHHHcCCccc
Q 022007 108 NKVYVIGG-EGILEELRQAGYTGL 130 (304)
Q Consensus 108 ~~v~~~g~-~~~~~~l~~~g~~~~ 130 (304)
. ++++|- ....+..+++|+..+
T Consensus 167 ~-~~~igDs~~Di~aA~~aG~~~i 189 (222)
T PRK10826 167 T-CVALEDSFNGMIAAKAARMRSI 189 (222)
T ss_pred H-eEEEcCChhhHHHHHHcCCEEE
Confidence 3 444443 344666777776543
No 161
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=97.01 E-value=0.0047 Score=52.08 Aligned_cols=88 Identities=19% Similarity=0.180 Sum_probs=59.5
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechH---------HHHHHHHHhCCCCCCC
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSS---------FAAAMYLKVNNFPQEN 108 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~---------~~~~~~l~~~~~~~~~ 108 (304)
..++||+.++|+.|+++|+++.++|| .+...+...|+.+|+.-.++.++++. ......+...+..+.
T Consensus 81 ~~~~~g~~~~l~~L~~~g~~~~i~S~---~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~- 156 (214)
T PRK13288 81 VTEYETVYETLKTLKKQGYKLGIVTT---KMRDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPE- 156 (214)
T ss_pred cccCcCHHHHHHHHHHCCCeEEEEeC---CCHHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHH-
Confidence 35899999999999999999999999 45677778889999875555555431 122233344455433
Q ss_pred eEEEEcCh-hHHHHHHHcCCcc
Q 022007 109 KVYVIGGE-GILEELRQAGYTG 129 (304)
Q Consensus 109 ~v~~~g~~-~~~~~l~~~g~~~ 129 (304)
.++++|-. .-.+..+++|+..
T Consensus 157 ~~~~iGDs~~Di~aa~~aG~~~ 178 (214)
T PRK13288 157 EALMVGDNHHDILAGKNAGTKT 178 (214)
T ss_pred HEEEECCCHHHHHHHHHCCCeE
Confidence 34444444 4456667777654
No 162
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=96.94 E-value=0.0069 Score=50.86 Aligned_cols=89 Identities=20% Similarity=0.256 Sum_probs=60.4
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechH---------HHHHHHHHhCCCCCCC
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSS---------FAAAMYLKVNNFPQEN 108 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~---------~~~~~~l~~~~~~~~~ 108 (304)
..++||+.++|+.|+++|+++.++|| .+...+...++++|+.-..+.++.+. ......++..+..+..
T Consensus 84 ~~~~~g~~~~L~~l~~~g~~~~i~S~---~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~ 160 (213)
T TIGR01449 84 TSVFPGVEATLGALRAKGLRLGLVTN---KPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQ 160 (213)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeC---CCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhH
Confidence 46899999999999999999999999 45666777888888864445454432 1233444555655433
Q ss_pred eEEEEcCh-hHHHHHHHcCCccc
Q 022007 109 KVYVIGGE-GILEELRQAGYTGL 130 (304)
Q Consensus 109 ~v~~~g~~-~~~~~l~~~g~~~~ 130 (304)
++++|-. .-....+++|+...
T Consensus 161 -~~~igDs~~d~~aa~~aG~~~i 182 (213)
T TIGR01449 161 -MVYVGDSRVDIQAARAAGCPSV 182 (213)
T ss_pred -eEEeCCCHHHHHHHHHCCCeEE
Confidence 4445443 44667777887653
No 163
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=96.94 E-value=0.0051 Score=53.74 Aligned_cols=89 Identities=12% Similarity=0.130 Sum_probs=61.7
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHH---------HHHHHHhCCCCCCC
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFA---------AAMYLKVNNFPQEN 108 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~---------~~~~l~~~~~~~~~ 108 (304)
..++||+.+.|+.|+++|+++.++|| .+...+...++.+|+.-.++.++++... ....+...++.+..
T Consensus 108 ~~l~pg~~e~L~~L~~~g~~l~I~Tn---~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~ 184 (260)
T PLN03243 108 YRLRPGSREFVQALKKHEIPIAVAST---RPRRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPER 184 (260)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeC---cCHHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHH
Confidence 35799999999999999999999999 5567777788888987556666654322 22334455665444
Q ss_pred eEEEEcChhHHHHHHHcCCcc
Q 022007 109 KVYVIGGEGILEELRQAGYTG 129 (304)
Q Consensus 109 ~v~~~g~~~~~~~l~~~g~~~ 129 (304)
.+++-.+..-.+..+.+|+..
T Consensus 185 ~l~IgDs~~Di~aA~~aG~~~ 205 (260)
T PLN03243 185 CIVFGNSNSSVEAAHDGCMKC 205 (260)
T ss_pred eEEEcCCHHHHHHHHHcCCEE
Confidence 444433445567777788765
No 164
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=96.93 E-value=0.013 Score=60.74 Aligned_cols=43 Identities=23% Similarity=0.194 Sum_probs=38.4
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 37 GDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 37 ~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
.+.+-|+++++|++++++|++++++|+ +++.......+++|+-
T Consensus 566 ~Dplr~~v~~aI~~l~~~Gi~v~~~TG---d~~~ta~~ia~~~gi~ 608 (997)
T TIGR01106 566 IDPPRAAVPDAVGKCRSAGIKVIMVTG---DHPITAKAIAKGVGII 608 (997)
T ss_pred cCCChHHHHHHHHHHHHCCCeEEEECC---CCHHHHHHHHHHcCCC
Confidence 456788999999999999999999999 8888888888889984
No 165
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=96.91 E-value=0.0044 Score=52.40 Aligned_cols=88 Identities=23% Similarity=0.260 Sum_probs=60.9
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHH---------HHHHHHHhCCCCCCCe
Q 022007 39 KLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSF---------AAAMYLKVNNFPQENK 109 (304)
Q Consensus 39 ~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~---------~~~~~l~~~~~~~~~~ 109 (304)
.++||+.++|+.|+++|++++++||+ +.......++.+|+.-..+.++++.. .....++..++.+ ..
T Consensus 94 ~~~~g~~~~L~~L~~~g~~~~i~Tn~---~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~-~~ 169 (221)
T TIGR02253 94 RVYPGVRDTLMELRESGYRLGIITDG---LPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKP-EE 169 (221)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEeCC---chHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCCh-hh
Confidence 68999999999999999999999993 45556677888998755566665422 2233445556543 34
Q ss_pred EEEEcCh--hHHHHHHHcCCccc
Q 022007 110 VYVIGGE--GILEELRQAGYTGL 130 (304)
Q Consensus 110 v~~~g~~--~~~~~l~~~g~~~~ 130 (304)
++++|-. .-....+++|+..+
T Consensus 170 ~~~igDs~~~di~~A~~aG~~~i 192 (221)
T TIGR02253 170 AVMVGDRLDKDIKGAKNLGMKTV 192 (221)
T ss_pred EEEECCChHHHHHHHHHCCCEEE
Confidence 6666654 35667777787653
No 166
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=96.87 E-value=0.007 Score=60.72 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=71.6
Q ss_pred CCCHHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCC--cHHHHHHHHHHcCC
Q 022007 164 HINYYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKP--STFMMEILSKKFQI 240 (304)
Q Consensus 164 ~~~~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP--~~~~~~~al~~lg~ 240 (304)
...+++..++++.|++. |++ .++|+... ..+..+-..+|.+....-.| ++..++ .++
T Consensus 567 d~~r~~a~~~i~~L~~~-gi~~~llTGd~~--------------~~a~~ia~~lgi~~~~~~~p~~K~~~v~----~l~- 626 (741)
T PRK11033 567 DTLRADARQAISELKAL-GIKGVMLTGDNP--------------RAAAAIAGELGIDFRAGLLPEDKVKAVT----ELN- 626 (741)
T ss_pred cCCchhHHHHHHHHHHC-CCEEEEEcCCCH--------------HHHHHHHHHcCCCeecCCCHHHHHHHHH----HHh-
Confidence 45688999999999987 776 45566443 12333444444443222233 234343 333
Q ss_pred CCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEE--ECCHHHHHHhhh
Q 022007 241 ASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYY--TNQVSDILELLG 303 (304)
Q Consensus 241 ~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v--~~~l~el~~~l~ 303 (304)
+++.++||||+ .||..++++++ ++|.+|++...... .+|.+ .+++.++.+.+.
T Consensus 627 ~~~~v~mvGDg-iNDapAl~~A~---vgia~g~~~~~a~~------~adivl~~~~l~~l~~~i~ 681 (741)
T PRK11033 627 QHAPLAMVGDG-INDAPAMKAAS---IGIAMGSGTDVALE------TADAALTHNRLRGLAQMIE 681 (741)
T ss_pred cCCCEEEEECC-HHhHHHHHhCC---eeEEecCCCHHHHH------hCCEEEecCCHHHHHHHHH
Confidence 34689999999 89999999999 99999987644333 35554 477888876653
No 167
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=96.85 E-value=0.013 Score=47.77 Aligned_cols=87 Identities=28% Similarity=0.326 Sum_probs=54.0
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechH---------HHHHHHHHhCCCCCCC
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSS---------FAAAMYLKVNNFPQEN 108 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~---------~~~~~~l~~~~~~~~~ 108 (304)
..+.||+.++|+.|+++|++++++||+. ... ...+.++|+.-..+.++++. ......++..++.++.
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~---~~~-~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~ 159 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSP---RDH-AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEE 159 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCc---hHH-HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcce
Confidence 4678999999999999999999999943 333 33444588765556655431 1223334445655444
Q ss_pred eEEEEcC-hhHHHHHHHcCCcc
Q 022007 109 KVYVIGG-EGILEELRQAGYTG 129 (304)
Q Consensus 109 ~v~~~g~-~~~~~~l~~~g~~~ 129 (304)
++++|- ..-.+..++.|+..
T Consensus 160 -~~~vgD~~~di~aA~~~G~~~ 180 (183)
T TIGR01509 160 -CLFVDDSPAGIEAAKAAGMHT 180 (183)
T ss_pred -EEEEcCCHHHHHHHHHcCCEE
Confidence 444443 33355667777654
No 168
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=96.74 E-value=0.0095 Score=54.63 Aligned_cols=89 Identities=17% Similarity=0.187 Sum_probs=63.7
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHH---------HHHHHHHhCCCCCCCe
Q 022007 39 KLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSF---------AAAMYLKVNNFPQENK 109 (304)
Q Consensus 39 ~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~---------~~~~~l~~~~~~~~~~ 109 (304)
.++||+.++|+.|+++|+++.|+|| .++..+...|+.+|+.-.++.|+++.. .....+...++.+...
T Consensus 216 ~l~pGa~ElL~~Lk~~GiklaIaSn---~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peec 292 (381)
T PLN02575 216 RLRTGSQEFVNVLMNYKIPMALVST---RPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERC 292 (381)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeC---CCHHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccE
Confidence 5789999999999999999999999 678888888999998755555655432 2223445556655444
Q ss_pred EEEEcChhHHHHHHHcCCccc
Q 022007 110 VYVIGGEGILEELRQAGYTGL 130 (304)
Q Consensus 110 v~~~g~~~~~~~l~~~g~~~~ 130 (304)
+++-.+..-.+..+.+|+..+
T Consensus 293 l~IGDS~~DIeAAk~AGm~~I 313 (381)
T PLN02575 293 IVFGNSNQTVEAAHDARMKCV 313 (381)
T ss_pred EEEcCCHHHHHHHHHcCCEEE
Confidence 444333455777788887654
No 169
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.007 Score=59.88 Aligned_cols=51 Identities=22% Similarity=0.272 Sum_probs=39.4
Q ss_pred CcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEE--ECCHHHHHHhhh
Q 022007 243 SRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYY--TNQVSDILELLG 303 (304)
Q Consensus 243 ~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v--~~~l~el~~~l~ 303 (304)
..+.||||. .||-.+..+|- ++|++|.++.-..+ .+|.+ -+++..+.+.++
T Consensus 600 ~~VamVGDG-INDAPALA~Ad---VGiAmG~GtDvA~e------aADvvL~~~dL~~v~~ai~ 652 (713)
T COG2217 600 RKVAMVGDG-INDAPALAAAD---VGIAMGSGTDVAIE------AADVVLMRDDLSAVPEAID 652 (713)
T ss_pred CEEEEEeCC-chhHHHHhhcC---eeEeecCCcHHHHH------hCCEEEecCCHHHHHHHHH
Confidence 589999999 89999999999 99999987643333 46665 455777776553
No 170
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=96.72 E-value=0.0072 Score=51.50 Aligned_cols=88 Identities=22% Similarity=0.286 Sum_probs=59.2
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHH---------HHHHHHhCCCCCCC
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFA---------AAMYLKVNNFPQEN 108 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~---------~~~~l~~~~~~~~~ 108 (304)
..++||+.+.|+.|+++|+++.++|| -++..+...++.+|+.-.++.++++... ....++..++.+..
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn---~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~ 168 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTN---AHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAER 168 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeC---cCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHH
Confidence 35799999999999999999999999 4566666778888887555656644321 22233455665444
Q ss_pred eEEEEcChhHHHHHHHcCCc
Q 022007 109 KVYVIGGEGILEELRQAGYT 128 (304)
Q Consensus 109 ~v~~~g~~~~~~~l~~~g~~ 128 (304)
.+++-.+..-.+..+.+|+.
T Consensus 169 ~l~igDs~~di~aA~~aG~~ 188 (224)
T PRK14988 169 TLFIDDSEPILDAAAQFGIR 188 (224)
T ss_pred EEEEcCCHHHHHHHHHcCCe
Confidence 44443333445677778875
No 171
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=96.67 E-value=0.011 Score=48.31 Aligned_cols=87 Identities=15% Similarity=0.177 Sum_probs=56.1
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHH---------HHHHHHHhCCCCCCC
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSF---------AAAMYLKVNNFPQEN 108 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~---------~~~~~l~~~~~~~~~ 108 (304)
..++||+.+.|+.|+++|++++++||+ ......|+.+|++-..+.++.+.. .....++..+..+..
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~-----~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 161 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS-----KNADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVSPNE 161 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc-----hhHHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHH
Confidence 468999999999999999999999993 445667888888744555655432 122233444554433
Q ss_pred eEEEEcChhHHHHHHHcCCcc
Q 022007 109 KVYVIGGEGILEELRQAGYTG 129 (304)
Q Consensus 109 ~v~~~g~~~~~~~l~~~g~~~ 129 (304)
.+++-.+..-.+..++.|+..
T Consensus 162 ~v~IgD~~~di~aA~~~G~~~ 182 (185)
T TIGR02009 162 CVVFEDALAGVQAARAAGMFA 182 (185)
T ss_pred eEEEeCcHhhHHHHHHCCCeE
Confidence 344433444456666667643
No 172
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=96.63 E-value=0.012 Score=49.83 Aligned_cols=89 Identities=21% Similarity=0.217 Sum_probs=59.3
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc--cCCCCeechHH---------HHHHHHHhCCCCC
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS--VSEDEIFSSSF---------AAAMYLKVNNFPQ 106 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~--~~~~~i~~~~~---------~~~~~l~~~~~~~ 106 (304)
..++||+.+.|+.|+++|+++.++|| .+...+...|+.+|+. -..+.++++.. .....+...+..+
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~---~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~ 162 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTG---FDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQD 162 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeC---CchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCC
Confidence 36899999999999999999999999 5666777777878876 33444554422 2223344455531
Q ss_pred CCeEEEEc-ChhHHHHHHHcCCcc
Q 022007 107 ENKVYVIG-GEGILEELRQAGYTG 129 (304)
Q Consensus 107 ~~~v~~~g-~~~~~~~l~~~g~~~ 129 (304)
...++++| +..-.+..+.+|+..
T Consensus 163 ~~~~~~igD~~~Di~aa~~aG~~~ 186 (220)
T TIGR03351 163 VQSVAVAGDTPNDLEAGINAGAGA 186 (220)
T ss_pred hhHeEEeCCCHHHHHHHHHCCCCe
Confidence 13466666 444466777778765
No 173
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=96.59 E-value=0.01 Score=49.56 Aligned_cols=85 Identities=19% Similarity=0.193 Sum_probs=54.5
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHH---------HHHHHHhCCCCCCCe
Q 022007 39 KLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFA---------AAMYLKVNNFPQENK 109 (304)
Q Consensus 39 ~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~---------~~~~l~~~~~~~~~~ 109 (304)
.++||+.++|++|+++|++++++||.+ . .+...++.+|+.-..+.++.+... ....+...++.+ ..
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~---~-~~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~-~~ 179 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFD---S-RLRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISP-EE 179 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCc---h-hHHHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCCh-hH
Confidence 578999999999999999999999943 2 245678888987555666654221 222334445543 34
Q ss_pred EEEEcCh--hHHHHHHHcCCc
Q 022007 110 VYVIGGE--GILEELRQAGYT 128 (304)
Q Consensus 110 v~~~g~~--~~~~~l~~~g~~ 128 (304)
++++|-. .-....++.|+.
T Consensus 180 ~~~IgD~~~~Di~~A~~aG~~ 200 (203)
T TIGR02252 180 ALHIGDSLRNDYQGARAAGWR 200 (203)
T ss_pred EEEECCCchHHHHHHHHcCCe
Confidence 5555543 235555666654
No 174
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=96.59 E-value=0.014 Score=50.64 Aligned_cols=89 Identities=19% Similarity=0.065 Sum_probs=57.4
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccC-CCCeechHH---------HHHHHHHhCCCC-
Q 022007 37 GDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVS-EDEIFSSSF---------AAAMYLKVNNFP- 105 (304)
Q Consensus 37 ~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~-~~~i~~~~~---------~~~~~l~~~~~~- 105 (304)
...++||+.+.|+.|+++|+++.|+|| .+...+...|+.+|+.-. .+.|+++.. .....++..++.
T Consensus 97 ~~~~~pg~~e~L~~L~~~g~~l~IvT~---~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~ 173 (253)
T TIGR01422 97 YSSPIPGVIEVIAYLRARGIKIGSTTG---YTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYD 173 (253)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEECC---CcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCC
Confidence 346899999999999999999999999 566677777777776533 255554322 222334445553
Q ss_pred CCCeEEEEcC-hhHHHHHHHcCCcc
Q 022007 106 QENKVYVIGG-EGILEELRQAGYTG 129 (304)
Q Consensus 106 ~~~~v~~~g~-~~~~~~l~~~g~~~ 129 (304)
+ ..++++|- ..-.+..+.+|+..
T Consensus 174 ~-~~~l~IGDs~~Di~aA~~aGi~~ 197 (253)
T TIGR01422 174 V-AACVKVGDTVPDIEEGRNAGMWT 197 (253)
T ss_pred c-hheEEECCcHHHHHHHHHCCCeE
Confidence 3 33444443 34456667777654
No 175
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=96.55 E-value=0.025 Score=47.96 Aligned_cols=88 Identities=24% Similarity=0.349 Sum_probs=61.2
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeech---------HHHHHHHHHhCCCCCCC
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSS---------SFAAAMYLKVNNFPQEN 108 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~---------~~~~~~~l~~~~~~~~~ 108 (304)
..++||+.++|..|+++|+++.|+|| ++...+...|+.+|+...++.++.. -..+...+...+..+ .
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~---k~~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~-~ 163 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTN---KPERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDP-E 163 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeC---CcHHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCCh-h
Confidence 46899999999999999999999999 7788888888889998766666651 111222334445442 2
Q ss_pred eEEEEcCh-hHHHHHHHcCCcc
Q 022007 109 KVYVIGGE-GILEELRQAGYTG 129 (304)
Q Consensus 109 ~v~~~g~~-~~~~~l~~~g~~~ 129 (304)
.++++|-. ...+..+++|+..
T Consensus 164 ~~l~VGDs~~Di~aA~~Ag~~~ 185 (220)
T COG0546 164 EALMVGDSLNDILAAKAAGVPA 185 (220)
T ss_pred heEEECCCHHHHHHHHHcCCCE
Confidence 45555554 4456677777543
No 176
>PRK08238 hypothetical protein; Validated
Probab=96.52 E-value=0.0025 Score=60.42 Aligned_cols=94 Identities=13% Similarity=-0.006 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCcE
Q 022007 167 YYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRM 245 (304)
Q Consensus 167 ~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~~ 245 (304)
++++.+.++.++++ |.+ +++|+++..... .+....+ .|+.+++.+.....||++.. +.+.+.++ .+++
T Consensus 74 ~pga~e~L~~lk~~-G~~v~LaTas~~~~a~----~i~~~lG---lFd~Vigsd~~~~~kg~~K~-~~l~~~l~--~~~~ 142 (479)
T PRK08238 74 NEEVLDYLRAERAA-GRKLVLATASDERLAQ----AVAAHLG---LFDGVFASDGTTNLKGAAKA-AALVEAFG--ERGF 142 (479)
T ss_pred ChhHHHHHHHHHHC-CCEEEEEeCCCHHHHH----HHHHHcC---CCCEEEeCCCccccCCchHH-HHHHHHhC--ccCe
Confidence 47888889888887 654 778998773221 0110001 15667777776667665543 23445555 3568
Q ss_pred EEEcCCchhhHHHHHHcCCeEEEEccCC
Q 022007 246 CMVGDRLDTDILFGQNAGCKTLLVLSGV 273 (304)
Q Consensus 246 ~~IGD~~~~Di~~a~~aG~~ti~V~~G~ 273 (304)
+++||+ .+|+.+++.+| +.+.|..+.
T Consensus 143 ~yvGDS-~~Dlp~~~~A~-~av~Vn~~~ 168 (479)
T PRK08238 143 DYAGNS-AADLPVWAAAR-RAIVVGASP 168 (479)
T ss_pred eEecCC-HHHHHHHHhCC-CeEEECCCH
Confidence 999999 99999999999 778786553
No 177
>PRK11587 putative phosphatase; Provisional
Probab=96.47 E-value=0.031 Score=47.28 Aligned_cols=89 Identities=15% Similarity=0.099 Sum_probs=55.0
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHH---------HHHHHHhCCCCCC
Q 022007 37 GDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFA---------AAMYLKVNNFPQE 107 (304)
Q Consensus 37 ~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~---------~~~~l~~~~~~~~ 107 (304)
...++||+.++|+.|+++|+++.++||++ .......++..|+.. .+.++++... ....+...|+.++
T Consensus 81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~---~~~~~~~l~~~~l~~-~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~ 156 (218)
T PRK11587 81 GITALPGAIALLNHLNKLGIPWAIVTSGS---VPVASARHKAAGLPA-PEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQ 156 (218)
T ss_pred CceeCcCHHHHHHHHHHcCCcEEEEcCCC---chHHHHHHHhcCCCC-ccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcc
Confidence 34689999999999999999999999953 333445566777753 3445544321 1122334455544
Q ss_pred CeEEEEcChhHHHHHHHcCCcc
Q 022007 108 NKVYVIGGEGILEELRQAGYTG 129 (304)
Q Consensus 108 ~~v~~~g~~~~~~~l~~~g~~~ 129 (304)
..+++-.+..-.+..+.+|+..
T Consensus 157 ~~l~igDs~~di~aA~~aG~~~ 178 (218)
T PRK11587 157 ECVVVEDAPAGVLSGLAAGCHV 178 (218)
T ss_pred cEEEEecchhhhHHHHHCCCEE
Confidence 4444433444456667777654
No 178
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=96.45 E-value=0.034 Score=47.01 Aligned_cols=89 Identities=21% Similarity=0.332 Sum_probs=59.3
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeech---------HHHHHHHHHhCCCCCC
Q 022007 37 GDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSS---------SFAAAMYLKVNNFPQE 107 (304)
Q Consensus 37 ~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~---------~~~~~~~l~~~~~~~~ 107 (304)
...++||+.++|+.|+++|++++++|| .........++.+|+.-..+.++++ .......+...+..+
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~---~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~- 166 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTN---KPTPFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDP- 166 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeC---CCHHHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCCCh-
Confidence 356899999999999999999999999 4556666778888886444444432 122333444455543
Q ss_pred CeEEEEcCh-hHHHHHHHcCCcc
Q 022007 108 NKVYVIGGE-GILEELRQAGYTG 129 (304)
Q Consensus 108 ~~v~~~g~~-~~~~~l~~~g~~~ 129 (304)
..++++|-. .-.+..+..|+..
T Consensus 167 ~~~i~igD~~~Di~~a~~~g~~~ 189 (226)
T PRK13222 167 EEMLFVGDSRNDIQAARAAGCPS 189 (226)
T ss_pred hheEEECCCHHHHHHHHHCCCcE
Confidence 345555544 4566777777754
No 179
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=96.42 E-value=0.024 Score=49.89 Aligned_cols=90 Identities=21% Similarity=0.242 Sum_probs=58.3
Q ss_pred cCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeech------HHHHHHHHHhCCCCCCCe
Q 022007 36 KGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSS------SFAAAMYLKVNNFPQENK 109 (304)
Q Consensus 36 ~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~------~~~~~~~l~~~~~~~~~~ 109 (304)
...+++||+.+.|+.|+++|+++.++|| .+...+...++.+|+.-..+.++++ ...+...+...+..+. .
T Consensus 139 ~~~~l~pg~~e~L~~L~~~gi~laIvSn---~~~~~~~~~L~~~gl~~~F~~vi~~~~~~~k~~~~~~~l~~~~~~p~-~ 214 (273)
T PRK13225 139 PALQLFPGVADLLAQLRSRSLCLGILSS---NSRQNIEAFLQRQGLRSLFSVVQAGTPILSKRRALSQLVAREGWQPA-A 214 (273)
T ss_pred ccCCcCCCHHHHHHHHHHCCCeEEEEeC---CCHHHHHHHHHHcCChhheEEEEecCCCCCCHHHHHHHHHHhCcChh-H
Confidence 3346899999999999999999999999 5667777788888876333333321 2222333444455443 3
Q ss_pred EEEEcCh-hHHHHHHHcCCcc
Q 022007 110 VYVIGGE-GILEELRQAGYTG 129 (304)
Q Consensus 110 v~~~g~~-~~~~~l~~~g~~~ 129 (304)
++++|-. .-.+..+.+|+..
T Consensus 215 ~l~IGDs~~Di~aA~~AG~~~ 235 (273)
T PRK13225 215 VMYVGDETRDVEAARQVGLIA 235 (273)
T ss_pred EEEECCCHHHHHHHHHCCCeE
Confidence 4555543 3456667777654
No 180
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=96.40 E-value=0.0086 Score=51.99 Aligned_cols=61 Identities=18% Similarity=0.286 Sum_probs=45.2
Q ss_pred hccCEEEEeE--EEE---------------------c-------CCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHH
Q 022007 23 DSVDAFLFDC--VIW---------------------K-------GDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQY 72 (304)
Q Consensus 23 ~~~k~i~fDi--tL~---------------------~-------~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~ 72 (304)
+..++++||| |++ + ...++|++.+..+.|+++|+.++++||.+...++.-
T Consensus 99 ~~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT 178 (275)
T TIGR01680 99 HEKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVT 178 (275)
T ss_pred CCCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHH
Confidence 4679999999 665 1 113588999999999999999999999333233444
Q ss_pred HHHHHhCCCcc
Q 022007 73 AHKFHSLGVSV 83 (304)
Q Consensus 73 ~~~l~~lG~~~ 83 (304)
.+.|++.|+..
T Consensus 179 ~~NL~kaGy~~ 189 (275)
T TIGR01680 179 EANLKKAGYHT 189 (275)
T ss_pred HHHHHHcCCCC
Confidence 45677788864
No 181
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=96.40 E-value=0.058 Score=55.38 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=34.6
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 37 GDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 37 ~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
.+.+-|+++++|++|++.|++++++|+ -.+.......+++|++
T Consensus 548 ~Dp~R~~a~~aI~~l~~aGI~v~miTG---D~~~tA~~IA~~lGI~ 590 (902)
T PRK10517 548 LDPPKETTAPALKALKASGVTVKILTG---DSELVAAKVCHEVGLD 590 (902)
T ss_pred hCcchhhHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHHHcCCC
Confidence 456788999999999999999999999 4455555566678874
No 182
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=96.39 E-value=0.019 Score=49.05 Aligned_cols=89 Identities=18% Similarity=0.171 Sum_probs=57.2
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHH---------HHHHHHHhCCCCCCC
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSF---------AAAMYLKVNNFPQEN 108 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~---------~~~~~l~~~~~~~~~ 108 (304)
..++||+.+.|+.|+++|+++.++||+ +.......++.+|+.-..+.++++.. .....++..|+.+.
T Consensus 94 ~~~~pg~~~~L~~L~~~g~~l~i~Tn~---~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~- 169 (229)
T PRK13226 94 SQLFDGVEGMLQRLECAGCVWGIVTNK---PEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPT- 169 (229)
T ss_pred CeeCCCHHHHHHHHHHCCCeEEEECCC---CHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChh-
Confidence 457999999999999999999999994 44555567788887644444443221 12233444565543
Q ss_pred eEEEEcCh-hHHHHHHHcCCccc
Q 022007 109 KVYVIGGE-GILEELRQAGYTGL 130 (304)
Q Consensus 109 ~v~~~g~~-~~~~~l~~~g~~~~ 130 (304)
.++++|-. .-.+..+..|+..+
T Consensus 170 ~~l~IGDs~~Di~aA~~aG~~~i 192 (229)
T PRK13226 170 DCVYVGDDERDILAARAAGMPSV 192 (229)
T ss_pred hEEEeCCCHHHHHHHHHCCCcEE
Confidence 34555443 34566677787653
No 183
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=96.37 E-value=0.024 Score=46.28 Aligned_cols=87 Identities=14% Similarity=0.184 Sum_probs=54.6
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHH---------HHHHHHhCCCCCCC
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFA---------AAMYLKVNNFPQEN 108 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~---------~~~~l~~~~~~~~~ 108 (304)
..++||+.++|+.|+++|+++.++||.. . ....|+.+|++-..+.++++... ....++..++.+..
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~--~---~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~ 160 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASK--N---APTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSE 160 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCc--c---HHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHH
Confidence 3689999999999999999999999832 1 23468888987556666655432 12233444544333
Q ss_pred eEEEEcChhHHHHHHHcCCcc
Q 022007 109 KVYVIGGEGILEELRQAGYTG 129 (304)
Q Consensus 109 ~v~~~g~~~~~~~l~~~g~~~ 129 (304)
.+++-.+..-....++.|+..
T Consensus 161 ~v~vgD~~~di~aA~~aG~~~ 181 (185)
T TIGR01990 161 CIGIEDAQAGIEAIKAAGMFA 181 (185)
T ss_pred eEEEecCHHHHHHHHHcCCEE
Confidence 333333334455666666654
No 184
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=96.32 E-value=0.037 Score=57.70 Aligned_cols=44 Identities=9% Similarity=0.043 Sum_probs=36.4
Q ss_pred cCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 36 KGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 36 ~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
-.+.+-|++.++|+.+++.|++++++|+ -.+.......+++|+.
T Consensus 643 ~~Dp~r~~v~~aI~~l~~aGIkv~MiTG---D~~~tA~~iA~~~Gi~ 686 (1053)
T TIGR01523 643 IYDPPRNESAGAVEKCHQAGINVHMLTG---DFPETAKAIAQEVGII 686 (1053)
T ss_pred eecCCchhHHHHHHHHHHCCCEEEEECC---CCHHHHHHHHHHcCCC
Confidence 3456788999999999999999999999 5666666667778874
No 185
>PLN02940 riboflavin kinase
Probab=96.32 E-value=0.028 Score=51.93 Aligned_cols=91 Identities=18% Similarity=0.114 Sum_probs=62.3
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHH-hCCCccCCCCeechHH---------HHHHHHHhCCCCC
Q 022007 37 GDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFH-SLGVSVSEDEIFSSSF---------AAAMYLKVNNFPQ 106 (304)
Q Consensus 37 ~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~-~lG~~~~~~~i~~~~~---------~~~~~l~~~~~~~ 106 (304)
...++||+.+.|+.|+++|+++.|+|| .+...+...++ .+|+.-..+.++++.. .....++..++.+
T Consensus 91 ~~~l~pGv~elL~~Lk~~g~~l~IvTn---~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p 167 (382)
T PLN02940 91 NIKALPGANRLIKHLKSHGVPMALASN---SPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEP 167 (382)
T ss_pred cCCCCcCHHHHHHHHHHCCCcEEEEeC---CcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCCh
Confidence 345789999999999999999999999 45556666776 5787655566665533 2233445556655
Q ss_pred CCeEEEEcChhHHHHHHHcCCccc
Q 022007 107 ENKVYVIGGEGILEELRQAGYTGL 130 (304)
Q Consensus 107 ~~~v~~~g~~~~~~~l~~~g~~~~ 130 (304)
+..+++-.+..-.+..+++|+..+
T Consensus 168 ~~~l~VGDs~~Di~aA~~aGi~~I 191 (382)
T PLN02940 168 SNCLVIEDSLPGVMAGKAAGMEVI 191 (382)
T ss_pred hHEEEEeCCHHHHHHHHHcCCEEE
Confidence 444444444455677888898754
No 186
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=96.28 E-value=0.053 Score=56.08 Aligned_cols=50 Identities=16% Similarity=0.111 Sum_probs=38.9
Q ss_pred CcEEEEcCCchhhHHHHHHcCCeEEEEccC-CCCccccCCCCCCCCCcEEEC--CHHHHHHhh
Q 022007 243 SRMCMVGDRLDTDILFGQNAGCKTLLVLSG-VTTQSTLQDPSNNIQPDYYTN--QVSDILELL 302 (304)
Q Consensus 243 ~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G-~~~~~~~~~~~~~~~pd~v~~--~l~el~~~l 302 (304)
+-+.|+||+ .||..+.++|- |+|++| .++.- .. ..+|+++. ++..+...+
T Consensus 669 ~vVam~GDG-vNDapALk~Ad---VGIAmg~~gtdv--Ak----~aADivL~dd~f~~I~~~i 721 (941)
T TIGR01517 669 EVVAVTGDG-TNDAPALKLAD---VGFSMGISGTEV--AK----EASDIILLDDNFASIVRAV 721 (941)
T ss_pred CEEEEECCC-CchHHHHHhCC---cceecCCCccHH--HH----HhCCEEEecCCHHHHHHHH
Confidence 479999999 89999999999 999999 55432 22 26788876 777777655
No 187
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=96.26 E-value=0.065 Score=55.10 Aligned_cols=50 Identities=12% Similarity=0.063 Sum_probs=39.0
Q ss_pred CcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEE--CCHHHHHHhh
Q 022007 243 SRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYT--NQVSDILELL 302 (304)
Q Consensus 243 ~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~--~~l~el~~~l 302 (304)
+-+.|+||+ .||..+.++|. ++|++|.++ ++.+ ..+|.|. +++..+...+
T Consensus 638 ~vVamtGDG-vNDaPALk~AD---VGIAmg~gt--dvAk----eaADiVLldd~f~~Iv~ai 689 (903)
T PRK15122 638 HTVGFLGDG-INDAPALRDAD---VGISVDSGA--DIAK----ESADIILLEKSLMVLEEGV 689 (903)
T ss_pred CEEEEECCC-chhHHHHHhCC---EEEEeCccc--HHHH----HhcCEEEecCChHHHHHHH
Confidence 579999999 89999999999 999999654 3322 2678876 6677776654
No 188
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=96.20 E-value=0.0031 Score=53.95 Aligned_cols=60 Identities=23% Similarity=0.411 Sum_probs=46.5
Q ss_pred hccCEEEEeE--EEEcC---------------------------CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHH
Q 022007 23 DSVDAFLFDC--VIWKG---------------------------DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYA 73 (304)
Q Consensus 23 ~~~k~i~fDi--tL~~~---------------------------~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~ 73 (304)
+...+|+||| |+++. ..++|++.++++.++++|..|+++||.+...++.-.
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~ 149 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQREATE 149 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHH
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHH
Confidence 5688999999 75431 135899999999999999999999994444455555
Q ss_pred HHHHhCCCc
Q 022007 74 HKFHSLGVS 82 (304)
Q Consensus 74 ~~l~~lG~~ 82 (304)
+.|++.|+.
T Consensus 150 ~nL~~~G~~ 158 (229)
T PF03767_consen 150 KNLKKAGFP 158 (229)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHcCCC
Confidence 678888875
No 189
>PRK09449 dUMP phosphatase; Provisional
Probab=96.19 E-value=0.028 Score=47.63 Aligned_cols=89 Identities=18% Similarity=0.131 Sum_probs=60.3
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHH---------HHHHHHhCCCCCCC
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFA---------AAMYLKVNNFPQEN 108 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~---------~~~~l~~~~~~~~~ 108 (304)
..++||+.++|+.|+ +|+++.++|| .+.......|+.+|+.-..+.++++... ....+...+..+..
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn---~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~ 169 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITN---GFTELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRS 169 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeC---CcHHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcc
Confidence 358999999999999 6899999999 3455666678889987555666654321 22344455543324
Q ss_pred eEEEEcChh--HHHHHHHcCCccc
Q 022007 109 KVYVIGGEG--ILEELRQAGYTGL 130 (304)
Q Consensus 109 ~v~~~g~~~--~~~~l~~~g~~~~ 130 (304)
.++++|-.. -.+..+.+|+...
T Consensus 170 ~~~~vgD~~~~Di~~A~~aG~~~i 193 (224)
T PRK09449 170 RVLMVGDNLHSDILGGINAGIDTC 193 (224)
T ss_pred cEEEEcCCcHHHHHHHHHCCCcEE
Confidence 567776552 4677788887643
No 190
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=96.16 E-value=0.00017 Score=58.25 Aligned_cols=92 Identities=7% Similarity=-0.192 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHcCCCceEEEecCCCccCCCCCccccChHHHH-HHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCcE
Q 022007 167 YYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMV-AAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRM 245 (304)
Q Consensus 167 ~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~-~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~~ 245 (304)
-|++.+.+..+.+. -..+|.|+....+.. .+...-... ..|..+++++.....||+ +.+.++.+|.+++++
T Consensus 44 RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~----~il~~ldp~~~~f~~~l~r~~~~~~~~~---~~K~L~~l~~~~~~v 115 (162)
T TIGR02251 44 RPHVDEFLERVSKW-YELVIFTASLEEYAD----PVLDILDRGGKVISRRLYRESCVFTNGK---YVKDLSLVGKDLSKV 115 (162)
T ss_pred CCCHHHHHHHHHhc-CEEEEEcCCcHHHHH----HHHHHHCcCCCEEeEEEEccccEEeCCC---EEeEchhcCCChhhE
Confidence 46778888888764 445777887663321 111100001 134455666766666766 777888899999999
Q ss_pred EEEcCCchhhHHHHHHcCCeEE
Q 022007 246 CMVGDRLDTDILFGQNAGCKTL 267 (304)
Q Consensus 246 ~~IGD~~~~Di~~a~~aG~~ti 267 (304)
+||||+ ..|+.++.++|+...
T Consensus 116 IiVDD~-~~~~~~~~~NgI~i~ 136 (162)
T TIGR02251 116 IIIDNS-PYSYSLQPDNAIPIK 136 (162)
T ss_pred EEEeCC-hhhhccCccCEeecC
Confidence 999999 899999999995433
No 191
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=96.12 E-value=0.0036 Score=53.99 Aligned_cols=91 Identities=14% Similarity=0.038 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHH-HHHHhhCCCCcccCCCcHHHHHHHHHHcCCC
Q 022007 164 HINYYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVA-AMCASTEKEPIVVGKPSTFMMEILSKKFQIA 241 (304)
Q Consensus 164 ~~~~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~-~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~ 241 (304)
.-.|+++.++++.|+++ |.+ +++||+.... ..... .+...++.. .++.+++..... ...+..++++++++
T Consensus 23 ~~~~pga~e~L~~L~~~-G~~~~ivTN~~~~~-~~~~~-~L~~~gl~~~~~~~Ii~s~~~~-----~~~l~~~~~~~~~~ 94 (242)
T TIGR01459 23 NHTYPGAVQNLNKIIAQ-GKPVYFVSNSPRNI-FSLHK-TLKSLGINADLPEMIISSGEIA-----VQMILESKKRFDIR 94 (242)
T ss_pred CccCccHHHHHHHHHHC-CCEEEEEeCCCCCh-HHHHH-HHHHCCCCccccceEEccHHHH-----HHHHHhhhhhccCC
Confidence 34589999999999987 665 6789976521 11000 111111222 344444433221 24667777788899
Q ss_pred CCcEEEEcCCchhhHHHHHHcC
Q 022007 242 SSRMCMVGDRLDTDILFGQNAG 263 (304)
Q Consensus 242 ~~~~~~IGD~~~~Di~~a~~aG 263 (304)
++++++|||+ ..|++....+|
T Consensus 95 ~~~~~~vGd~-~~d~~~~~~~~ 115 (242)
T TIGR01459 95 NGIIYLLGHL-ENDIINLMQCY 115 (242)
T ss_pred CceEEEeCCc-ccchhhhcCCC
Confidence 9999999999 78888776555
No 192
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=96.06 E-value=0.037 Score=46.71 Aligned_cols=87 Identities=25% Similarity=0.324 Sum_probs=60.9
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHH---------HHHHHHHhC-CCCCC
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSF---------AAAMYLKVN-NFPQE 107 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~---------~~~~~l~~~-~~~~~ 107 (304)
.+++||+.++|+.|+++ ++++++|| .+...+...++++|+....+.++.+.. .....+... ++.++
T Consensus 96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn---~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~ 171 (224)
T TIGR02254 96 HQLLPGAFELMENLQQK-FRLYIVTN---GVRETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKE 171 (224)
T ss_pred CeeCccHHHHHHHHHhc-CcEEEEeC---CchHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCch
Confidence 46899999999999999 99999999 446666777888998766666665533 223344555 65543
Q ss_pred CeEEEEcCh--hHHHHHHHcCCcc
Q 022007 108 NKVYVIGGE--GILEELRQAGYTG 129 (304)
Q Consensus 108 ~~v~~~g~~--~~~~~l~~~g~~~ 129 (304)
.++++|-. .-....++.|++.
T Consensus 172 -~~v~igD~~~~di~~A~~~G~~~ 194 (224)
T TIGR02254 172 -EVLMIGDSLTADIKGGQNAGLDT 194 (224)
T ss_pred -heEEECCCcHHHHHHHHHCCCcE
Confidence 45566543 3566777788765
No 193
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=96.05 E-value=0.025 Score=47.43 Aligned_cols=91 Identities=20% Similarity=0.173 Sum_probs=51.5
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHH---------HHHHHHHhCCCCCCC
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSF---------AAAMYLKVNNFPQEN 108 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~---------~~~~~l~~~~~~~~~ 108 (304)
..++||+.++|+.|+++|+++.++||+...... ....+..+|+.-..+.++.|.. .....+...|+.+..
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~-~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~ 171 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHS-AEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPEE 171 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCCccch-hhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHHH
Confidence 357999999999999999999999996543322 2222333454433444444321 112233445554434
Q ss_pred eEEEEcChhHHHHHHHcCCcc
Q 022007 109 KVYVIGGEGILEELRQAGYTG 129 (304)
Q Consensus 109 ~v~~~g~~~~~~~l~~~g~~~ 129 (304)
.+++-....-....++.|+..
T Consensus 172 ~l~i~D~~~di~aA~~aG~~~ 192 (211)
T TIGR02247 172 CVFLDDLGSNLKPAAALGITT 192 (211)
T ss_pred eEEEcCCHHHHHHHHHcCCEE
Confidence 444422223455666777654
No 194
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=96.04 E-value=0.11 Score=53.27 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=35.2
Q ss_pred cCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 36 KGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 36 ~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
-.+.+-|+++++|++|++.|++++++|+ -.+.......+++|+.
T Consensus 512 l~Dp~R~~~~~aI~~l~~aGI~vvmiTG---D~~~tA~aIA~~lGI~ 555 (867)
T TIGR01524 512 FLDPPKESTKEAIAALFKNGINVKVLTG---DNEIVTARICQEVGID 555 (867)
T ss_pred eeCCCchhHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHHHcCCC
Confidence 4567888999999999999999999999 4555555556667774
No 195
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=96.01 E-value=0.062 Score=47.00 Aligned_cols=89 Identities=17% Similarity=0.104 Sum_probs=53.9
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc-cCCCCeechH---------HHHHHHHHhCCCCCC
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS-VSEDEIFSSS---------FAAAMYLKVNNFPQE 107 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~-~~~~~i~~~~---------~~~~~~l~~~~~~~~ 107 (304)
..++||+.+.|+.|+++|+++.|+|| .+...+...++.+|+. ...+.|+++. ......+...++.+.
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~---~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~ 176 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTG---YTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDV 176 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcC---CcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCC
Confidence 36799999999999999999999999 4555555566655543 2123343332 222334445565321
Q ss_pred CeEEEEcC-hhHHHHHHHcCCcc
Q 022007 108 NKVYVIGG-EGILEELRQAGYTG 129 (304)
Q Consensus 108 ~~v~~~g~-~~~~~~l~~~g~~~ 129 (304)
..++++|- ..-.+..+.+|+..
T Consensus 177 ~e~l~IGDs~~Di~aA~~aG~~~ 199 (267)
T PRK13478 177 AACVKVDDTVPGIEEGLNAGMWT 199 (267)
T ss_pred cceEEEcCcHHHHHHHHHCCCEE
Confidence 33444443 34456667777654
No 196
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=96.01 E-value=0.019 Score=48.62 Aligned_cols=41 Identities=22% Similarity=0.466 Sum_probs=34.8
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCCcCHHH----HHHHHHhCCCcc
Q 022007 40 LIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQ----YAHKFHSLGVSV 83 (304)
Q Consensus 40 ~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~----~~~~l~~lG~~~ 83 (304)
++|||.|+++...++|..++++|| |+.+. -.+-|+++|++.
T Consensus 123 ~vpGA~eFl~Yvn~~Gg~ifyiSN---R~~~~~~~~T~~nLk~~g~~~ 167 (274)
T COG2503 123 AVPGAVEFLNYVNSNGGKIFYISN---RDQENEKDGTIENLKSEGLPQ 167 (274)
T ss_pred cCccHHHHHHHHHhcCcEEEEEec---cchhcccchhHHHHHHcCccc
Confidence 489999999999999999999999 66554 446688899983
No 197
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=95.94 E-value=0.037 Score=48.68 Aligned_cols=89 Identities=20% Similarity=0.282 Sum_probs=57.0
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechH-----H----HHHHHHHhCCCCCCC
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSS-----F----AAAMYLKVNNFPQEN 108 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~-----~----~~~~~l~~~~~~~~~ 108 (304)
..++||+.++|+.|+++|++++++|| .+...+...++.+|+.-..+.++++. . .....+...|+.+..
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn---~~~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~ 176 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITN---KPERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQ 176 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEEC---CcHHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhH
Confidence 35799999999999999999999999 44555666777788764334344321 1 122344455655434
Q ss_pred eEEEEcChhHHHHHHHcCCcc
Q 022007 109 KVYVIGGEGILEELRQAGYTG 129 (304)
Q Consensus 109 ~v~~~g~~~~~~~l~~~g~~~ 129 (304)
.+++-.+..-.+..++.|+..
T Consensus 177 ~l~IGD~~~Di~aA~~aGi~~ 197 (272)
T PRK13223 177 SLFVGDSRSDVLAAKAAGVQC 197 (272)
T ss_pred EEEECCCHHHHHHHHHCCCeE
Confidence 344433334567778888764
No 198
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=95.81 E-value=0.045 Score=46.53 Aligned_cols=89 Identities=15% Similarity=0.094 Sum_probs=51.1
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhC---CCccCCCCee----c---hHHHHHHHHHhCCCCCCC
Q 022007 39 KLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSL---GVSVSEDEIF----S---SSFAAAMYLKVNNFPQEN 108 (304)
Q Consensus 39 ~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~l---G~~~~~~~i~----~---~~~~~~~~l~~~~~~~~~ 108 (304)
.++||+.++|++|+++|+++.|+||++ .......++.. ++.-..+.++ . ........+...++.+..
T Consensus 95 ~lypgv~e~L~~Lk~~G~~l~I~Sn~s---~~~~~~~~~~~~~~~L~~~f~~~fd~~~g~KP~p~~y~~i~~~lgv~p~e 171 (220)
T TIGR01691 95 HLYPDVPPALEAWLQLGLRLAVYSSGS---VPAQKLLFGHSDAGNLTPYFSGYFDTTVGLKTEAQSYVKIAGQLGSPPRE 171 (220)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHhhccccchhhhcceEEEeCcccCCCHHHHHHHHHHhCcChhH
Confidence 489999999999999999999999943 33323333332 2221111121 1 112223344555665544
Q ss_pred eEEEEcChhHHHHHHHcCCccc
Q 022007 109 KVYVIGGEGILEELRQAGYTGL 130 (304)
Q Consensus 109 ~v~~~g~~~~~~~l~~~g~~~~ 130 (304)
.+++-....-.+..+++|+...
T Consensus 172 ~lfVgDs~~Di~AA~~AG~~ti 193 (220)
T TIGR01691 172 ILFLSDIINELDAARKAGLHTG 193 (220)
T ss_pred EEEEeCCHHHHHHHHHcCCEEE
Confidence 4444334455677788887653
No 199
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=95.80 E-value=0.061 Score=45.73 Aligned_cols=92 Identities=25% Similarity=0.276 Sum_probs=63.4
Q ss_pred cCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHHHHH------HH---HhCCCCC
Q 022007 36 KGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFAAAM------YL---KVNNFPQ 106 (304)
Q Consensus 36 ~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~------~l---~~~~~~~ 106 (304)
.+..++||+.++|+.|+++|++++++|| .++..+...|+.+|+.-.++.++++...... |+ +..|+.|
T Consensus 83 ~~~~~~pGv~~~l~~L~~~~i~~avaS~---s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P 159 (221)
T COG0637 83 EGLKPIPGVVELLEQLKARGIPLAVASS---SPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDP 159 (221)
T ss_pred cCCCCCccHHHHHHHHHhcCCcEEEecC---ChHHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCCh
Confidence 4557999999999999999999999999 5566677778889988767777766554321 22 2334555
Q ss_pred CCeEEEEcChhHHHHHHHcCCccc
Q 022007 107 ENKVYVIGGEGILEELRQAGYTGL 130 (304)
Q Consensus 107 ~~~v~~~g~~~~~~~l~~~g~~~~ 130 (304)
.+.+.+--+..=....+.+|...+
T Consensus 160 ~~CvviEDs~~Gi~Aa~aAGm~vv 183 (221)
T COG0637 160 EECVVVEDSPAGIQAAKAAGMRVV 183 (221)
T ss_pred HHeEEEecchhHHHHHHHCCCEEE
Confidence 444555444444566666776654
No 200
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=95.73 E-value=0.026 Score=47.10 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=46.2
Q ss_pred hccCEEEEeE--EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 23 DSVDAFLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 23 ~~~k~i~fDi--tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
.....||.|+ ||+...--..-|...+.+|++.|++|+++|. .++.++...=+++|.+
T Consensus 5 ~~~~lIFtDlD~TLl~~~ye~~pA~pv~~el~d~G~~Vi~~SS---KT~aE~~~l~~~l~v~ 63 (274)
T COG3769 5 QMPLLIFTDLDGTLLPHSYEWQPAAPVLLELKDAGVPVILCSS---KTRAEMLYLQKSLGVQ 63 (274)
T ss_pred ccceEEEEcccCcccCCCCCCCccchHHHHHHHcCCeEEEecc---chHHHHHHHHHhcCCC
Confidence 3567899999 9998443444489999999999999999988 8888877776778876
No 201
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=95.70 E-value=0.05 Score=45.27 Aligned_cols=88 Identities=19% Similarity=0.259 Sum_probs=49.9
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHh-CCCccCCCCeechHH---------HHHHHHHhCCCCCCC
Q 022007 39 KLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHS-LGVSVSEDEIFSSSF---------AAAMYLKVNNFPQEN 108 (304)
Q Consensus 39 ~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~-lG~~~~~~~i~~~~~---------~~~~~l~~~~~~~~~ 108 (304)
.++||+.++|+.|+++|++++++||++ .......+.. .|+.-..+.+++|.. .....++..++.+..
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~---~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~ 160 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTN---RLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAAD 160 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCc---hhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhH
Confidence 478999999999999999999999943 2222222222 233323344444422 122334555655444
Q ss_pred eEEEEcChhHHHHHHHcCCcc
Q 022007 109 KVYVIGGEGILEELRQAGYTG 129 (304)
Q Consensus 109 ~v~~~g~~~~~~~l~~~g~~~ 129 (304)
.+++-.+..-....++.|+..
T Consensus 161 ~l~vgD~~~di~aA~~aG~~~ 181 (199)
T PRK09456 161 AVFFDDNADNIEAANALGITS 181 (199)
T ss_pred eEEeCCCHHHHHHHHHcCCEE
Confidence 344433333455667777654
No 202
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=95.70 E-value=0.28 Score=51.51 Aligned_cols=43 Identities=12% Similarity=0.233 Sum_probs=36.4
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 37 GDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 37 ~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
.+.+-|++.++|++|++.|++++++|| ..+.......+++|+-
T Consensus 654 ~d~lr~~~~~~I~~l~~agi~v~miTG---D~~~TA~~iA~~~gii 696 (1054)
T TIGR01657 654 ENPLKPDTKEVIKELKRASIRTVMITG---DNPLTAVHVARECGIV 696 (1054)
T ss_pred ecCCCccHHHHHHHHHHCCCeEEEECC---CCHHHHHHHHHHcCCC
Confidence 456788999999999999999999999 6677767777788884
No 203
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=95.67 E-value=0.11 Score=52.48 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=37.3
Q ss_pred EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 33 VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 33 tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
.+.-.+.+-|+++++|++|++.|++++++|+ -.+.......+++|+.
T Consensus 436 li~l~Dp~R~~a~~aI~~l~~aGI~v~miTG---D~~~tA~~IA~~lGI~ 482 (755)
T TIGR01647 436 LLPLFDPPRHDTKETIERARHLGVEVKMVTG---DHLAIAKETARRLGLG 482 (755)
T ss_pred EeeccCCChhhHHHHHHHHHHCCCeEEEECC---CCHHHHHHHHHHcCCC
Confidence 3345677889999999999999999999999 4555555666678874
No 204
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=95.63 E-value=0.11 Score=43.12 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=40.4
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeech
Q 022007 39 KLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSS 91 (304)
Q Consensus 39 ~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~ 91 (304)
.+.+++.+.|+.|+++|+++.++|| .+...+...|+.+|++-.++.++++
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~---~~~~~~~~~l~~~gl~~~f~~~~~~ 155 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTG---RPRKDAAKFLTTHGLEILFPVQIWM 155 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECC---CCHHHHHHHHHHcCchhhCCEEEee
Confidence 4566789999999999999999999 6777888889999987555555543
No 205
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=95.40 E-value=0.37 Score=38.47 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=33.7
Q ss_pred EEEEeE--EEEcCC------------ccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHH
Q 022007 27 AFLFDC--VIWKGD------------KLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQ 71 (304)
Q Consensus 27 ~i~fDi--tL~~~~------------~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~ 71 (304)
.|++|| ||-.++ ..-+|+.+.++++.++|++++.+|. |+..+
T Consensus 1 VVvsDIDGTiT~SD~~G~i~~~~G~d~~h~g~~~l~~~i~~~GY~ilYlTa---Rp~~q 56 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHILPILGKDWTHPGAAELYRKIADNGYKILYLTA---RPIGQ 56 (157)
T ss_pred CEEEeccCCcCccchhhhhhhccCchhhhhcHHHHHHHHHHCCeEEEEECc---CcHHH
Confidence 368888 766553 3568999999999999999999999 77543
No 206
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=95.24 E-value=0.17 Score=42.60 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=34.5
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
-.++||+.+.|+.|+++|++++++||+ ........++.+|++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~---~~~~~~~~l~~~~i~ 125 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGG---FDLFAEHVKDKLGLD 125 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCC---cHHHHHHHHHHcCCC
Confidence 357899999999999999999999993 355555667778876
No 207
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=95.20 E-value=0.19 Score=39.67 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=28.6
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHh
Q 022007 39 KLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHS 78 (304)
Q Consensus 39 ~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~ 78 (304)
..+||+.++|+.|+++|+++.++||+ +.......++.
T Consensus 64 ~~~~g~~e~l~~L~~~g~~~~i~T~~---~~~~~~~~~~~ 100 (154)
T TIGR01549 64 AYIRGAADLLKRLKEAGIKLGIISNG---SLRAQKLLLRK 100 (154)
T ss_pred eeccCHHHHHHHHHHCcCeEEEEeCC---chHHHHHHHHH
Confidence 35789999999999999999999994 44444444444
No 208
>PLN02811 hydrolase
Probab=94.96 E-value=0.19 Score=42.50 Aligned_cols=91 Identities=12% Similarity=0.130 Sum_probs=50.5
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHh-CCCccCCCCeechH--H---------HHHHHHHhCC-
Q 022007 37 GDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHS-LGVSVSEDEIFSSS--F---------AAAMYLKVNN- 103 (304)
Q Consensus 37 ~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~-lG~~~~~~~i~~~~--~---------~~~~~l~~~~- 103 (304)
...++||+.+.|+.|+++|+++.++||. ++..+...+.+ .|+.-..+.++++. . .....+...+
T Consensus 76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~---~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~ 152 (220)
T PLN02811 76 TSDLMPGAERLVRHLHAKGIPIAIATGS---HKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFED 152 (220)
T ss_pred hCCCCccHHHHHHHHHHCCCcEEEEeCC---chhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCC
Confidence 3457899999999999999999999993 33333333222 24332223333333 1 1222333333
Q ss_pred --CCCCCeEEEEcChhHHHHHHHcCCccc
Q 022007 104 --FPQENKVYVIGGEGILEELRQAGYTGL 130 (304)
Q Consensus 104 --~~~~~~v~~~g~~~~~~~l~~~g~~~~ 130 (304)
+.+...+++--+..-.+..+.+|+..+
T Consensus 153 ~~~~~~~~v~IgDs~~di~aA~~aG~~~i 181 (220)
T PLN02811 153 GPVDPGKVLVFEDAPSGVEAAKNAGMSVV 181 (220)
T ss_pred CCCCccceEEEeccHhhHHHHHHCCCeEE
Confidence 443333444334445667777776553
No 209
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=94.92 E-value=0.9 Score=46.19 Aligned_cols=55 Identities=11% Similarity=0.205 Sum_probs=42.7
Q ss_pred cCEEEEeE--EEEcCC---------ccCccHHHHHHHHHHC-CCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 25 VDAFLFDC--VIWKGD---------KLIDGVRQTLDVLRSK-GKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 25 ~k~i~fDi--tL~~~~---------~~~~~a~eal~~L~~~-G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
..++|||. ||.... .+.|+..++|+.|.+. +..|+|+|+ |+.+.+.+.+...++.
T Consensus 507 ~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSG---R~~~~L~~~~~~~~l~ 573 (797)
T PLN03063 507 NRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETLKALCSDPKTTVVVLSR---SGKDILDKNFGEYNIW 573 (797)
T ss_pred CeEEEEecCccccCCCCCccccccCCCCHHHHHHHHHHHcCCCCEEEEEeC---CCHHHHHHHhCCCCCc
Confidence 35889999 997421 2455778999999865 678999999 9999999998765544
No 210
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=94.90 E-value=0.33 Score=50.98 Aligned_cols=43 Identities=28% Similarity=0.337 Sum_probs=33.1
Q ss_pred cCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCC
Q 022007 36 KGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGV 81 (304)
Q Consensus 36 ~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~ 81 (304)
-.+++-+++.++|+.|++.|+++.++||. ..+......++.|+
T Consensus 628 ieD~lq~~v~etI~~L~~AGIkv~mlTGD---~~~TA~~IA~~~~i 670 (1057)
T TIGR01652 628 IEDKLQEGVPETIELLRQAGIKIWVLTGD---KVETAINIGYSCRL 670 (1057)
T ss_pred EhhhhhhccHHHHHHHHHCCCeEEEEcCC---cHHHHHHHHHHhCC
Confidence 35678899999999999999999999993 44444445555555
No 211
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=94.71 E-value=0.23 Score=47.07 Aligned_cols=87 Identities=11% Similarity=0.158 Sum_probs=58.2
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHH--------HHHHHHHhCCCCCCCe
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSF--------AAAMYLKVNNFPQENK 109 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~--------~~~~~l~~~~~~~~~~ 109 (304)
..++||+.+.|+.|+++|+++.++|| .+.......++.+|+.-.++.++++.. .....+...+ + ..
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~---~~~~~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~l~--~-~~ 402 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASN---GLTEYLRAIVSYYDLDQWVTETFSIEQINSLNKSDLVKSILNKYD--I-KE 402 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeC---CchHHHHHHHHHCCcHhhcceeEecCCCCCCCCcHHHHHHHHhcC--c-ce
Confidence 36799999999999999999999999 567777788888888644444443321 2222333322 2 34
Q ss_pred EEEEcCh-hHHHHHHHcCCccc
Q 022007 110 VYVIGGE-GILEELRQAGYTGL 130 (304)
Q Consensus 110 v~~~g~~-~~~~~l~~~g~~~~ 130 (304)
++++|-. .-.+..+.+|+...
T Consensus 403 ~v~VGDs~~Di~aAk~AG~~~I 424 (459)
T PRK06698 403 AAVVGDRLSDINAAKDNGLIAI 424 (459)
T ss_pred EEEEeCCHHHHHHHHHCCCeEE
Confidence 6666643 44567788887653
No 212
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=94.68 E-value=0.17 Score=41.39 Aligned_cols=85 Identities=20% Similarity=0.198 Sum_probs=53.7
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHH-------------HHHHHHHhCCCC
Q 022007 39 KLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSF-------------AAAMYLKVNNFP 105 (304)
Q Consensus 39 ~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~-------------~~~~~l~~~~~~ 105 (304)
.++||+.++|++|+ +++.++|| .+.......++.+|+.-..+.++++.. .....+...+..
T Consensus 84 ~~~~g~~~~L~~L~---~~~~i~Tn---~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~ 157 (184)
T TIGR01993 84 KPDPELRNLLLRLP---GRKIIFTN---GDRAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVD 157 (184)
T ss_pred CCCHHHHHHHHhCC---CCEEEEeC---CCHHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCC
Confidence 47889999999997 47899999 456677788888998755566665422 122233445555
Q ss_pred CCCeEEEEcChhHHHHHHHcCCcc
Q 022007 106 QENKVYVIGGEGILEELRQAGYTG 129 (304)
Q Consensus 106 ~~~~v~~~g~~~~~~~l~~~g~~~ 129 (304)
+...+++-.+..-.+..++.|+..
T Consensus 158 ~~~~l~vgD~~~di~aA~~~G~~~ 181 (184)
T TIGR01993 158 PERAIFFDDSARNIAAAKALGMKT 181 (184)
T ss_pred ccceEEEeCCHHHHHHHHHcCCEE
Confidence 433333333333455666667653
No 213
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=94.64 E-value=0.41 Score=47.41 Aligned_cols=111 Identities=16% Similarity=0.156 Sum_probs=70.3
Q ss_pred CCCHHHHHHHHHHHHcCCCceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcc-cCCC--cHHHHHHHHHHcCC
Q 022007 164 HINYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIV-VGKP--STFMMEILSKKFQI 240 (304)
Q Consensus 164 ~~~~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~-~gKP--~~~~~~~al~~lg~ 240 (304)
...-+++.++++.+++. |++.+.-..|.. ..+..+....|.+.+. .-+| +.+.++...+
T Consensus 445 D~~Rp~a~eaI~~l~~~-Gi~v~miTGD~~-------------~ta~~iA~~lGI~~v~a~~~PedK~~~v~~lq~---- 506 (675)
T TIGR01497 445 DIVKGGIKERFAQLRKM-GIKTIMITGDNR-------------LTAAAIAAEAGVDDFIAEATPEDKIALIRQEQA---- 506 (675)
T ss_pred ccchhHHHHHHHHHHHC-CCEEEEEcCCCH-------------HHHHHHHHHcCCCEEEcCCCHHHHHHHHHHHHH----
Confidence 44578899999999987 887544333331 1334455556665432 2333 2334443322
Q ss_pred CCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEE--CCHHHHHHhh
Q 022007 241 ASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYT--NQVSDILELL 302 (304)
Q Consensus 241 ~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~--~~l~el~~~l 302 (304)
....+.|+||+ .||..+.++++ ++|++|.++..... .+|.+. +++..+.+.+
T Consensus 507 ~g~~VamvGDG-~NDapAL~~Ad---vGiAm~~gt~~ake------aadivLldd~~s~Iv~av 560 (675)
T TIGR01497 507 EGKLVAMTGDG-TNDAPALAQAD---VGVAMNSGTQAAKE------AANMVDLDSDPTKLIEVV 560 (675)
T ss_pred cCCeEEEECCC-cchHHHHHhCC---EeEEeCCCCHHHHH------hCCEEECCCCHHHHHHHH
Confidence 33579999999 89999999999 99999976543222 467764 4566666554
No 214
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=94.58 E-value=0.12 Score=43.02 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=55.1
Q ss_pred EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCcc--CCCCe-ech-HHHHHHHHHhCCCCCCC
Q 022007 33 VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSV--SEDEI-FSS-SFAAAMYLKVNNFPQEN 108 (304)
Q Consensus 33 tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~--~~~~i-~~~-~~~~~~~l~~~~~~~~~ 108 (304)
.+...+.+.|++.++|+.|++.|+++.++|| -+........+.+|++- -...+ -.| ......+++..+..+.
T Consensus 121 ~~~~~d~~~~~~~~~l~~L~~~Gi~~~i~TG---D~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~- 196 (215)
T PF00702_consen 121 LFGLRDPLRPGAKEALQELKEAGIKVAILTG---DNESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPG- 196 (215)
T ss_dssp EEEEEEEBHTTHHHHHHHHHHTTEEEEEEES---SEHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGG-
T ss_pred EEeecCcchhhhhhhhhhhhccCcceeeeec---cccccccccccccccccccccccccccccchhHHHHHHHHhcCCC-
Confidence 3345567899999999999999999999999 56777777788899831 11111 022 1223445555554333
Q ss_pred eEEEEcChh-HHHHHHHc
Q 022007 109 KVYVIGGEG-ILEELRQA 125 (304)
Q Consensus 109 ~v~~~g~~~-~~~~l~~~ 125 (304)
.+.++|-.. ....++++
T Consensus 197 ~v~~vGDg~nD~~al~~A 214 (215)
T PF00702_consen 197 EVAMVGDGVNDAPALKAA 214 (215)
T ss_dssp GEEEEESSGGHHHHHHHS
T ss_pred EEEEEccCHHHHHHHHhC
Confidence 566666543 33344443
No 215
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=94.56 E-value=0.28 Score=50.64 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=33.7
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 37 GDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 37 ~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
.+.+-++++++|+.|++.|+++..+|| =.+..-...-+++|+.
T Consensus 545 ~Dppr~~v~~aI~~l~~AGI~v~MiTG---D~~~TA~aIa~~~Gi~ 587 (917)
T COG0474 545 EDPPREDVKEAIEELREAGIKVWMITG---DHVETAIAIAKECGIE 587 (917)
T ss_pred cCCCCccHHHHHHHHHHCCCcEEEECC---CCHHHHHHHHHHcCCC
Confidence 356788999999999999999999999 4555555555566654
No 216
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=94.45 E-value=0.55 Score=46.56 Aligned_cols=114 Identities=14% Similarity=0.062 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHHHcCCCceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCC
Q 022007 164 HINYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASS 243 (304)
Q Consensus 164 ~~~~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~ 243 (304)
...-+++.++++.+++. |++.+.-..|.. .-+..+....|.+.+..+- .|+-=..+.+.+.-.-+
T Consensus 440 Dp~R~~a~e~I~~Lr~~-GI~vvMiTGDn~-------------~TA~aIA~elGI~~v~A~~-~PedK~~iV~~lQ~~G~ 504 (673)
T PRK14010 440 DVIKDGLVERFRELREM-GIETVMCTGDNE-------------LTAATIAKEAGVDRFVAEC-KPEDKINVIREEQAKGH 504 (673)
T ss_pred cCCcHHHHHHHHHHHHC-CCeEEEECCCCH-------------HHHHHHHHHcCCceEEcCC-CHHHHHHHHHHHHhCCC
Confidence 44578899999999987 887553333331 1244555566665432221 34333334444433335
Q ss_pred cEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEE--CCHHHHHHhh
Q 022007 244 RMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYT--NQVSDILELL 302 (304)
Q Consensus 244 ~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~--~~l~el~~~l 302 (304)
-+.|+||. .||..+.++|. ++|+||.++.-..+ .+|.|. +++..+.+.+
T Consensus 505 ~VaMtGDG-vNDAPALa~AD---VGIAMgsGTdvAke------AADiVLldd~ls~Iv~av 555 (673)
T PRK14010 505 IVAMTGDG-TNDAPALAEAN---VGLAMNSGTMSAKE------AANLIDLDSNPTKLMEVV 555 (673)
T ss_pred EEEEECCC-hhhHHHHHhCC---EEEEeCCCCHHHHH------hCCEEEcCCCHHHHHHHH
Confidence 69999999 89999999999 99999976543222 577765 5677776654
No 217
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=94.42 E-value=0.23 Score=40.67 Aligned_cols=89 Identities=9% Similarity=0.066 Sum_probs=56.6
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHH---------HHHHHHhCCCCCC
Q 022007 37 GDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFA---------AAMYLKVNNFPQE 107 (304)
Q Consensus 37 ~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~---------~~~~l~~~~~~~~ 107 (304)
...++| +.+.|..|+++ +++.++|| .+...+...|+++|+.-..+.|+++... ....++..+..+.
T Consensus 86 ~~~~~~-~~e~L~~L~~~-~~l~I~T~---~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~ 160 (188)
T PRK10725 86 SVEPLP-LIEVVKAWHGR-RPMAVGTG---SESAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPT 160 (188)
T ss_pred cCCCcc-HHHHHHHHHhC-CCEEEEcC---CchHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHH
Confidence 345677 46999999865 89999999 5667777889999987556777766432 2223344454433
Q ss_pred CeEEEEcChhHHHHHHHcCCccc
Q 022007 108 NKVYVIGGEGILEELRQAGYTGL 130 (304)
Q Consensus 108 ~~v~~~g~~~~~~~l~~~g~~~~ 130 (304)
..+++-.+..-.+..+++|++.+
T Consensus 161 ~~l~igDs~~di~aA~~aG~~~i 183 (188)
T PRK10725 161 QCVVFEDADFGIQAARAAGMDAV 183 (188)
T ss_pred HeEEEeccHhhHHHHHHCCCEEE
Confidence 33444333344666777776653
No 218
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=94.39 E-value=0.3 Score=43.27 Aligned_cols=88 Identities=14% Similarity=0.132 Sum_probs=52.2
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCC-cc-CCCCeechH---------HHHHHHHHhCCCCCC
Q 022007 39 KLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGV-SV-SEDEIFSSS---------FAAAMYLKVNNFPQE 107 (304)
Q Consensus 39 ~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~-~~-~~~~i~~~~---------~~~~~~l~~~~~~~~ 107 (304)
.++||+.+.|+.|+++|+++.++|| .+...+...++.++. .. ..-.++.+. ......+...++.+.
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn---~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~ 220 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCST---SNEKAVSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPS 220 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeC---CCHHHHHHHHHHhccccccCceEEEeccccCCCCCCHHHHHHHHHHhCcChH
Confidence 6899999999999999999999999 455555555554421 11 110122111 122233445565543
Q ss_pred CeEEEEc-ChhHHHHHHHcCCccc
Q 022007 108 NKVYVIG-GEGILEELRQAGYTGL 130 (304)
Q Consensus 108 ~~v~~~g-~~~~~~~l~~~g~~~~ 130 (304)
.++++| +..-.+..+++|+..+
T Consensus 221 -~~l~IGDs~~Di~aA~~aG~~~i 243 (286)
T PLN02779 221 -RCVVVEDSVIGLQAAKAAGMRCI 243 (286)
T ss_pred -HEEEEeCCHHhHHHHHHcCCEEE
Confidence 345555 3344667778887654
No 219
>PLN03190 aminophospholipid translocase; Provisional
Probab=94.34 E-value=2.8 Score=44.52 Aligned_cols=51 Identities=25% Similarity=0.305 Sum_probs=37.0
Q ss_pred CcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhh
Q 022007 243 SRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELL 302 (304)
Q Consensus 243 ~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l 302 (304)
.-++||||+ .||+.|.++|. |+| |....+-... ...+||.+..+..|..+|
T Consensus 872 ~vtlaIGDG-aNDv~mIq~Ad---VGI--GIsG~EG~qA---~~aSDfaI~~Fr~L~rLL 922 (1178)
T PLN03190 872 DMTLAIGDG-ANDVSMIQMAD---VGV--GISGQEGRQA---VMASDFAMGQFRFLVPLL 922 (1178)
T ss_pred cEEEEECCC-cchHHHHHhcC---eee--eecCchhHHH---HHhhccchhhhHHHHHHH
Confidence 468999999 99999999998 777 3221121110 126899999999988776
No 220
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=94.22 E-value=1.7 Score=45.15 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCCCCcE-EEEcCCchh-hHHHHHHcCCeEEEEccC
Q 022007 228 TFMMEILSKKFQIASSRM-CMVGDRLDT-DILFGQNAGCKTLLVLSG 272 (304)
Q Consensus 228 ~~~~~~al~~lg~~~~~~-~~IGD~~~~-Di~~a~~aG~~ti~V~~G 272 (304)
...++++..++|++.+++ +++||+ .+ |.++. -.|...-.|+-|
T Consensus 958 gqAlRyL~~rwgi~l~~v~VfaGdS-GntD~e~L-l~G~~~tvi~~g 1002 (1050)
T TIGR02468 958 SQALRYLFVRWGIELANMAVFVGES-GDTDYEGL-LGGLHKTVILKG 1002 (1050)
T ss_pred HHHHHHHHHHcCCChHHeEEEeccC-CCCCHHHH-hCCceeEEEEec
Confidence 788999999999999999 559999 66 97766 556655556666
No 221
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=94.18 E-value=0.33 Score=40.92 Aligned_cols=125 Identities=10% Similarity=0.011 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCcE
Q 022007 166 NYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRM 245 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~~ 245 (304)
.|+++..++++-+.. |+++++-|++.......---..+.|.+..+++..+.. ..-.|--...|..+.+.+|.++.++
T Consensus 124 v~aDv~~a~e~w~~~-g~~vyIYSSgsv~AqKllfg~s~~gdl~~y~~gyfDt--~iG~K~e~~sy~~I~~~Ig~s~~ei 200 (254)
T KOG2630|consen 124 VYADVLPAIERWSGE-GVRVYIYSSGSVAAQKLLFGYSDAGDLRKYISGYFDT--TIGLKVESQSYKKIGHLIGKSPREI 200 (254)
T ss_pred ccchhHHHHHHHhhc-CceEEEEcCCcHHHHHHHHcccCcchHHHHhhhhhhc--cccceehhHHHHHHHHHhCCChhhe
Confidence 578888888877765 7876665655522110000012345455444444332 2224556788999999999999999
Q ss_pred EEEcCCchhhHHHHHHcCCeEEEEc-cCCCCccccCCCCCCCCCcEEECCHHHHH
Q 022007 246 CMVGDRLDTDILFGQNAGCKTLLVL-SGVTTQSTLQDPSNNIQPDYYTNQVSDIL 299 (304)
Q Consensus 246 ~~IGD~~~~Di~~a~~aG~~ti~V~-~G~~~~~~~~~~~~~~~pd~v~~~l~el~ 299 (304)
++.-|. ..-..+|+.+|+.+.++. .|+....+-.. ..--++.++..|.
T Consensus 201 LfLTd~-~~Ea~aa~~aGl~a~l~~rPgna~l~dd~~-----~~y~~i~~F~~l~ 249 (254)
T KOG2630|consen 201 LFLTDV-PREAAAARKAGLQAGLVSRPGNAPLPDDAK-----VEYCVIWSFEILE 249 (254)
T ss_pred EEeccC-hHHHHHHHhcccceeeeecCCCCCCCcccc-----cceeeeccchhhh
Confidence 999999 899999999999888874 46554322111 1123566665543
No 222
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=93.82 E-value=0.37 Score=40.66 Aligned_cols=87 Identities=22% Similarity=0.186 Sum_probs=59.2
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHHH--------H-HHHHhCCCCCCC
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFAA--------A-MYLKVNNFPQEN 108 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~--------~-~~l~~~~~~~~~ 108 (304)
-..+|++.++|+.|+++ +++.++||+ ........|+++|+.-.++.+++|...- . ..+...|+.+ .
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg---~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p-~ 172 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNG---ARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPP-E 172 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCC---ChHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCc-c
Confidence 46788999999999988 999999994 5566677889999887788888775542 1 2334445543 3
Q ss_pred eEEEEcChhH--HHHHHHcCCcc
Q 022007 109 KVYVIGGEGI--LEELRQAGYTG 129 (304)
Q Consensus 109 ~v~~~g~~~~--~~~l~~~g~~~ 129 (304)
.++.+|-... ....++.|+..
T Consensus 173 ~~l~VgD~~~~di~gA~~~G~~~ 195 (229)
T COG1011 173 EALFVGDSLENDILGARALGMKT 195 (229)
T ss_pred eEEEECCChhhhhHHHHhcCcEE
Confidence 3555554332 24566677654
No 223
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=93.78 E-value=0.38 Score=40.52 Aligned_cols=85 Identities=16% Similarity=0.110 Sum_probs=53.8
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCC-CeechHH---------HHHHHHHhCCCCCC
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSED-EIFSSSF---------AAAMYLKVNNFPQE 107 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~-~i~~~~~---------~~~~~l~~~~~~~~ 107 (304)
..++||+.++|+.| ++++.++|| .+...+...|+.+|+.-.++ .++++.. .....+...++.+.
T Consensus 87 ~~~~~gv~~~L~~L---~~~~~ivTn---~~~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~ 160 (221)
T PRK10563 87 LEPIAGANALLESI---TVPMCVVSN---GPVSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVE 160 (221)
T ss_pred CCcCCCHHHHHHHc---CCCEEEEeC---CcHHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHH
Confidence 46899999999998 489999999 35566777888888875554 3444321 22233445555443
Q ss_pred CeEEEEc-ChhHHHHHHHcCCcc
Q 022007 108 NKVYVIG-GEGILEELRQAGYTG 129 (304)
Q Consensus 108 ~~v~~~g-~~~~~~~l~~~g~~~ 129 (304)
. ++++| +..-.+..+++|++.
T Consensus 161 ~-~l~igDs~~di~aA~~aG~~~ 182 (221)
T PRK10563 161 N-CILVDDSSAGAQSGIAAGMEV 182 (221)
T ss_pred H-eEEEeCcHhhHHHHHHCCCEE
Confidence 3 44444 334456667777665
No 224
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.62 E-value=3.5 Score=34.92 Aligned_cols=42 Identities=26% Similarity=0.182 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeE-EEEc
Q 022007 227 STFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKT-LLVL 270 (304)
Q Consensus 227 ~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~t-i~V~ 270 (304)
+..+++..++.-+++- .+++|||| .+|+.|.+.+--+. +.|+
T Consensus 192 ka~i~e~~~ele~~d~-sa~~VGDS-ItDv~ml~~~rgrGglAva 234 (315)
T COG4030 192 KAKIMEGYCELEGIDF-SAVVVGDS-ITDVKMLEAARGRGGLAVA 234 (315)
T ss_pred hhHHHHHHHhhcCCCc-ceeEecCc-ccchHHHHHhhccCceEEE
Confidence 4677777777666654 49999999 89999999874433 5554
No 225
>PLN02954 phosphoserine phosphatase
Probab=93.17 E-value=0.18 Score=42.56 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=34.5
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 39 KLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 39 ~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
.+.||+.+.|+.|+++|++++|+|| .....+...++.+|++
T Consensus 84 ~l~pg~~e~l~~l~~~g~~~~IvS~---~~~~~i~~~l~~~gi~ 124 (224)
T PLN02954 84 RLSPGIPELVKKLRARGTDVYLVSG---GFRQMIAPVAAILGIP 124 (224)
T ss_pred CCCccHHHHHHHHHHCCCEEEEECC---CcHHHHHHHHHHhCCC
Confidence 4789999999999999999999999 4455566677788885
No 226
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=93.03 E-value=0.42 Score=44.34 Aligned_cols=45 Identities=24% Similarity=0.254 Sum_probs=39.3
Q ss_pred CCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEE
Q 022007 225 KPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLV 269 (304)
Q Consensus 225 KP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V 269 (304)
|-+...|..+++.-++++...+.+||+...|+.+++..|+.|.+-
T Consensus 157 KnSg~LFk~Vlk~EnVd~~~w~H~GDN~~aD~l~pk~LgI~Tlf~ 201 (635)
T COG5610 157 KNSGNLFKAVLKLENVDPKKWIHCGDNWVADYLKPKNLGISTLFY 201 (635)
T ss_pred cccchHHHHHHhhcCCChhheEEecCchhhhhcCccccchhHHHH
Confidence 444566889999999999999999999999999999999887764
No 227
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=92.95 E-value=0.52 Score=45.90 Aligned_cols=91 Identities=20% Similarity=0.200 Sum_probs=60.3
Q ss_pred EEEcCCccCccHHHHHHHHHHCC-CcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHHHHHHHHhCCCCCCCeEE
Q 022007 33 VIWKGDKLIDGVRQTLDVLRSKG-KKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFAAAMYLKVNNFPQENKVY 111 (304)
Q Consensus 33 tL~~~~~~~~~a~eal~~L~~~G-~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~~~~~~~~v~ 111 (304)
++...+.+.||+.++|++|+++| +++.++|| .+.......++++|++-....+....+. ..++..+.. ...+.
T Consensus 378 ~i~~~d~~~~g~~e~l~~L~~~g~i~v~ivTg---d~~~~a~~i~~~lgi~~~f~~~~p~~K~--~~v~~l~~~-~~~v~ 451 (556)
T TIGR01525 378 VIALRDQLRPEAKEAIAALKRAGGIKLVMLTG---DNRSAAEAVAAELGIDEVHAELLPEDKL--AIVKELQEE-GGVVA 451 (556)
T ss_pred EEEecccchHhHHHHHHHHHHcCCCeEEEEeC---CCHHHHHHHHHHhCCCeeeccCCHHHHH--HHHHHHHHc-CCEEE
Confidence 44456789999999999999999 99999999 6677777788889997333333222221 233322111 13566
Q ss_pred EEcCh-hHHHHHHHcCCcc
Q 022007 112 VIGGE-GILEELRQAGYTG 129 (304)
Q Consensus 112 ~~g~~-~~~~~l~~~g~~~ 129 (304)
++|-. .....++.+|+.+
T Consensus 452 ~vGDg~nD~~al~~A~vgi 470 (556)
T TIGR01525 452 MVGDGINDAPALAAADVGI 470 (556)
T ss_pred EEECChhHHHHHhhCCEeE
Confidence 66665 4456778877544
No 228
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=92.91 E-value=0.84 Score=44.50 Aligned_cols=88 Identities=19% Similarity=0.244 Sum_probs=57.0
Q ss_pred EEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHH-HHHHHHhCCCCCCCeEEE
Q 022007 34 IWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFA-AAMYLKVNNFPQENKVYV 112 (304)
Q Consensus 34 L~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~-~~~~l~~~~~~~~~~v~~ 112 (304)
+.-.+.+.|++.++|++|+++|++++++|| .+.......++++|+++. .++....+. ....+... ..++.+
T Consensus 400 ~~~~d~l~~~a~e~i~~Lk~~Gi~v~ilSg---d~~~~a~~ia~~lgi~~~-~~~~p~~K~~~v~~l~~~----~~~v~~ 471 (562)
T TIGR01511 400 FALEDQLRPEAKEVIQALKRRGIEPVMLTG---DNRKTAKAVAKELGINVR-AEVLPDDKAALIKELQEK----GRVVAM 471 (562)
T ss_pred EEecccccHHHHHHHHHHHHcCCeEEEEcC---CCHHHHHHHHHHcCCcEE-ccCChHHHHHHHHHHHHc----CCEEEE
Confidence 334678999999999999999999999999 556666677788999721 111111111 11222222 245777
Q ss_pred EcCh-hHHHHHHHcCCcc
Q 022007 113 IGGE-GILEELRQAGYTG 129 (304)
Q Consensus 113 ~g~~-~~~~~l~~~g~~~ 129 (304)
+|-. .....++.+|+.+
T Consensus 472 VGDg~nD~~al~~A~vgi 489 (562)
T TIGR01511 472 VGDGINDAPALAQADVGI 489 (562)
T ss_pred EeCCCccHHHHhhCCEEE
Confidence 7655 4566777777644
No 229
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=92.86 E-value=1.2 Score=44.25 Aligned_cols=113 Identities=16% Similarity=0.103 Sum_probs=72.3
Q ss_pred CCCHHHHHHHHHHHHcCCCceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcc-cCCCcHHHHHHHHHHcCCCC
Q 022007 164 HINYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIV-VGKPSTFMMEILSKKFQIAS 242 (304)
Q Consensus 164 ~~~~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~-~gKP~~~~~~~al~~lg~~~ 242 (304)
...-+++.++++.|++. |++.+....|.. .-+..+....|.+.+. .-+ |+-=..+.+.+.-.-
T Consensus 444 D~~R~~~~eai~~Lr~~-GI~vvMiTGDn~-------------~TA~aIA~elGId~v~A~~~--PedK~~iV~~lQ~~G 507 (679)
T PRK01122 444 DIVKPGIKERFAELRKM-GIKTVMITGDNP-------------LTAAAIAAEAGVDDFLAEAT--PEDKLALIRQEQAEG 507 (679)
T ss_pred ccCchhHHHHHHHHHHC-CCeEEEECCCCH-------------HHHHHHHHHcCCcEEEccCC--HHHHHHHHHHHHHcC
Confidence 44568899999999988 887554333331 1244555566665432 234 333333333333333
Q ss_pred CcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEE--CCHHHHHHhh
Q 022007 243 SRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYT--NQVSDILELL 302 (304)
Q Consensus 243 ~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~--~~l~el~~~l 302 (304)
+-+.|+||. .||-.+.++|. ++|+||.++.-..+ .+|.+. +++..+.+.+
T Consensus 508 ~~VaMtGDG-vNDAPALa~AD---VGIAMgsGTdvAke------AADiVLldd~~s~Iv~av 559 (679)
T PRK01122 508 RLVAMTGDG-TNDAPALAQAD---VGVAMNSGTQAAKE------AGNMVDLDSNPTKLIEVV 559 (679)
T ss_pred CeEEEECCC-cchHHHHHhCC---EeEEeCCCCHHHHH------hCCEEEeCCCHHHHHHHH
Confidence 569999999 89999999999 99999976533222 577764 4677776654
No 230
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=92.85 E-value=2.8 Score=36.67 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=41.6
Q ss_pred hccCEEEEeE--EEEcCC------ccCccHHHHHHHHHHCCC-cEEEEeCCCCcCHHHHHHHHHhCCC
Q 022007 23 DSVDAFLFDC--VIWKGD------KLIDGVRQTLDVLRSKGK-KLIFVTNNSRRSRRQYAHKFHSLGV 81 (304)
Q Consensus 23 ~~~k~i~fDi--tL~~~~------~~~~~a~eal~~L~~~G~-~~~i~Tn~s~r~~~~~~~~l~~lG~ 81 (304)
.+-.+++||. ||.... .+.++..+.|++|..+.. -++|+|+ |+.+++...+.-.|+
T Consensus 16 a~~~~~~lDyDGTl~~i~~~p~~a~~~~~l~~lL~~Las~~~~~v~iiSG---R~~~~l~~~~~v~~i 80 (266)
T COG1877 16 ARKRLLFLDYDGTLTEIVPHPEAAVPDDRLLSLLQDLASDPRNVVAIISG---RSLAELERLFGVPGI 80 (266)
T ss_pred ccceEEEEeccccccccccCccccCCCHHHHHHHHHHHhcCCCeEEEEeC---CCHHHHHHhcCCCCc
Confidence 3677999999 886432 234467899999998743 5788888 999998888764444
No 231
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=92.69 E-value=1.2 Score=38.63 Aligned_cols=49 Identities=6% Similarity=0.104 Sum_probs=39.5
Q ss_pred CCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHH----HHcCCeEEEEccCCC
Q 022007 225 KPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFG----QNAGCKTLLVLSGVT 274 (304)
Q Consensus 225 KP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a----~~aG~~ti~V~~G~~ 274 (304)
-++.+++..++.+.|..|+.++||.|+ ...+... +..|+..+++.+...
T Consensus 161 ~~KG~~L~~fL~~~~~~pk~IIfIDD~-~~nl~sv~~a~k~~~I~f~G~~Yt~~ 213 (252)
T PF11019_consen 161 QDKGEVLKYFLDKINQSPKKIIFIDDN-KENLKSVEKACKKSGIDFIGFHYTGA 213 (252)
T ss_pred CccHHHHHHHHHHcCCCCCeEEEEeCC-HHHHHHHHHHHhhCCCcEEEEEEcch
Confidence 344788999999999999999999999 7777654 446998888876543
No 232
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=92.26 E-value=4.4 Score=41.03 Aligned_cols=108 Identities=13% Similarity=0.139 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHcCCCceEE-EecCCCccCCCCCccccChHHHHHHHHHhhCCCCcc-cCCCc--HHHHHHHHHHcCCC
Q 022007 166 NYYKLQYGTLCIRENPGCLFI-ATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIV-VGKPS--TFMMEILSKKFQIA 241 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~~i-~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~-~gKP~--~~~~~~al~~lg~~ 241 (304)
.-++...+...|++. |.+.+ .|..+. .-+......+|.+.+. .-+|. .+.++.+-+ +
T Consensus 724 vr~~a~~av~~Lk~~-Gi~v~mLTGDn~--------------~aA~svA~~VGi~~V~aev~P~~K~~~Ik~lq~----~ 784 (951)
T KOG0207|consen 724 VRPDAALAVAELKSM-GIKVVMLTGDND--------------AAARSVAQQVGIDNVYAEVLPEQKAEKIKEIQK----N 784 (951)
T ss_pred cchhHHHHHHHHHhc-CceEEEEcCCCH--------------HHHHHHHHhhCcceEEeccCchhhHHHHHHHHh----c
Confidence 356777788889888 77755 344322 1234445556654433 23553 345555543 3
Q ss_pred CCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEE--ECCHHHHHHhh
Q 022007 242 SSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYY--TNQVSDILELL 302 (304)
Q Consensus 242 ~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v--~~~l~el~~~l 302 (304)
...+.||||. .||-.+..+|- ++|..|.++.-..+ .+|.| -+++.++...+
T Consensus 785 ~~~VaMVGDG-INDaPALA~Ad---VGIaig~gs~vAie------aADIVLmrn~L~~v~~ai 837 (951)
T KOG0207|consen 785 GGPVAMVGDG-INDAPALAQAD---VGIAIGAGSDVAIE------AADIVLMRNDLRDVPFAI 837 (951)
T ss_pred CCcEEEEeCC-CCccHHHHhhc---cceeeccccHHHHh------hCCEEEEccchhhhHHHH
Confidence 4689999999 89999999998 88888887543333 45654 45666665443
No 233
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=91.98 E-value=1.3 Score=44.36 Aligned_cols=43 Identities=16% Similarity=0.303 Sum_probs=33.9
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCcc
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSV 83 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~ 83 (304)
+.|-+++++|+..+++.|++|..+|+ -..+.-...-+++|+..
T Consensus 583 DPPR~ev~~ai~~c~~aGIrV~mITG---D~~~TA~AI~r~iGi~~ 625 (972)
T KOG0202|consen 583 DPPRPEVADAIELCRQAGIRVIMITG---DNKETAEAIAREIGIFS 625 (972)
T ss_pred CCCchhHHHHHHHHHHcCCEEEEEcC---CCHHHHHHHHHHhCCCc
Confidence 45777899999999999999999999 44555555666677653
No 234
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=91.85 E-value=0.95 Score=38.78 Aligned_cols=83 Identities=14% Similarity=0.155 Sum_probs=52.3
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHH---------HHHHHHHhCCCCCCC
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSF---------AAAMYLKVNNFPQEN 108 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~---------~~~~~l~~~~~~~~~ 108 (304)
..++||+.++|+.|+++ +++.++||++.. ++.+|+.-.++.++++.. .....+...++.+ .
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~--------~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~-~ 181 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ--------PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPI-G 181 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCCch--------HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCCh-h
Confidence 35789999999999875 899999995432 355777644455554422 1122334456543 3
Q ss_pred eEEEEcCh--hHHHHHHHcCCccc
Q 022007 109 KVYVIGGE--GILEELRQAGYTGL 130 (304)
Q Consensus 109 ~v~~~g~~--~~~~~l~~~g~~~~ 130 (304)
.++++|-. .-....++.|+...
T Consensus 182 ~~~~VGD~~~~Di~~A~~aG~~~i 205 (238)
T PRK10748 182 EILHVGDDLTTDVAGAIRCGMQAC 205 (238)
T ss_pred HEEEEcCCcHHHHHHHHHCCCeEE
Confidence 46666654 34666777887653
No 235
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=91.72 E-value=1.3 Score=40.02 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=54.1
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCC-------CCee------------chHHHHHH
Q 022007 37 GDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSE-------DEIF------------SSSFAAAM 97 (304)
Q Consensus 37 ~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~-------~~i~------------~~~~~~~~ 97 (304)
.-.+.||+.+.|+.|++.|++++|+||+...- ....++++|++... +..+ .-...+..
T Consensus 179 ~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~---~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~ 255 (322)
T PRK11133 179 NLPLMPGLTELVLKLQALGWKVAIASGGFTYF---ADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTR 255 (322)
T ss_pred hCCCChhHHHHHHHHHHcCCEEEEEECCcchh---HHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHH
Confidence 34578999999999999999999999943322 22334467875210 1111 11223344
Q ss_pred HHHhCCCCCCCeEEEEcChhHHHHHHHcCCccc
Q 022007 98 YLKVNNFPQENKVYVIGGEGILEELRQAGYTGL 130 (304)
Q Consensus 98 ~l~~~~~~~~~~v~~~g~~~~~~~l~~~g~~~~ 130 (304)
+..+.|+.+...+++-........++.+|+.+.
T Consensus 256 la~~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA 288 (322)
T PRK11133 256 LAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIA 288 (322)
T ss_pred HHHHcCCChhhEEEEECCHHHHHHHHHCCCeEE
Confidence 555666654344444333455667778887553
No 236
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=91.50 E-value=0.064 Score=46.87 Aligned_cols=86 Identities=13% Similarity=-0.019 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccCCCCCccccChHHHHH-HHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCc
Q 022007 166 NYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVA-AMCASTEKEPIVVGKPSTFMMEILSKKFQIASSR 244 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~-~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~ 244 (304)
.++++.+.++.+++++...+++||.+..........+...| +.. ..+.++..+ ..+|++.-.+.+.+.+++
T Consensus 119 ~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~G-i~~~~~d~lllr~---~~~~K~~rr~~I~~~y~I---- 190 (266)
T TIGR01533 119 PVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFG-FPQADEEHLLLKK---DKSSKESRRQKVQKDYEI---- 190 (266)
T ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcC-cCCCCcceEEeCC---CCCCcHHHHHHHHhcCCE----
Confidence 46788888999988733457889976521100000000000 000 011122221 235677888888887776
Q ss_pred EEEEcCCchhhHHHHH
Q 022007 245 MCMVGDRLDTDILFGQ 260 (304)
Q Consensus 245 ~~~IGD~~~~Di~~a~ 260 (304)
+++|||+ ..|+....
T Consensus 191 vl~vGD~-~~Df~~~~ 205 (266)
T TIGR01533 191 VLLFGDN-LLDFDDFF 205 (266)
T ss_pred EEEECCC-HHHhhhhh
Confidence 9999999 89997643
No 237
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=91.34 E-value=3.5 Score=35.34 Aligned_cols=74 Identities=16% Similarity=0.229 Sum_probs=46.6
Q ss_pred HHHHHHHHHHc---CCCCCcEEEEcCCchhhHHHHHHcCC-eEEEEccCCCCccccCCCCCCCCCcEE-ECCHHHHHHhh
Q 022007 228 TFMMEILSKKF---QIASSRMCMVGDRLDTDILFGQNAGC-KTLLVLSGVTTQSTLQDPSNNIQPDYY-TNQVSDILELL 302 (304)
Q Consensus 228 ~~~~~~al~~l---g~~~~~~~~IGD~~~~Di~~a~~aG~-~ti~V~~G~~~~~~~~~~~~~~~pd~v-~~~l~el~~~l 302 (304)
..+++..++.. |+.-+++++|||+ .+|+=.+...+- +.++...|+.-...+.+.+...++..+ -.+-.|+.+.|
T Consensus 152 ~~il~~~~~~~~~~g~~~~rviYiGDG-~nD~Cp~~~L~~~D~v~~R~~~~l~~~i~~~~~~~~a~v~~W~~g~~i~~~l 230 (234)
T PF06888_consen 152 GKILERLLQEQAQRGVPYDRVIYIGDG-RNDFCPALRLRPRDVVFPRKGYPLHKLIQKNPGEVKAEVVPWSSGEEILEIL 230 (234)
T ss_pred HHHHHHHHHHHhhcCCCcceEEEECCC-CCCcCcccccCCCCEEecCCCChHHHHHhcCCCcceeEEEecCCHHHHHHHH
Confidence 67777777763 6778999999999 999999888654 567777776433333321122233332 33445555544
No 238
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=90.52 E-value=0.6 Score=38.12 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=26.3
Q ss_pred cHHHHHHH---HHHcCCCCCcEEEEcCCchhhHHHHH
Q 022007 227 STFMMEIL---SKKFQIASSRMCMVGDRLDTDILFGQ 260 (304)
Q Consensus 227 ~~~~~~~a---l~~lg~~~~~~~~IGD~~~~Di~~a~ 260 (304)
+...++.+ ... +.+...+++|||+ .+|+.|++
T Consensus 158 K~~~l~~~~~~~~~-~~~~~~~~~iGDs-~~D~~~lr 192 (192)
T PF12710_consen 158 KAEALKELYIRDEE-DIDPDRVIAIGDS-INDLPMLR 192 (192)
T ss_dssp HHHHHHHHHHHHHH-THTCCEEEEEESS-GGGHHHHH
T ss_pred HHHHHHHHHHHhhc-CCCCCeEEEEECC-HHHHHHhC
Confidence 46677777 444 7888999999999 99999985
No 239
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=90.50 E-value=0.73 Score=40.23 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=51.9
Q ss_pred hhhccCEEEEeE--EEEcCCc--cC--ccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHH
Q 022007 21 LFDSVDAFLFDC--VIWKGDK--LI--DGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFA 94 (304)
Q Consensus 21 ~~~~~k~i~fDi--tL~~~~~--~~--~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~ 94 (304)
.......|+||+ ||.+... .+ |...+.|++|++.|..+++=|- =+++.+..-|++++++-.++-|++.+..
T Consensus 118 ~~~~phVIVfDlD~TLItd~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSy---G~~eHV~~sl~~~~L~~~Fd~ii~~G~~ 194 (297)
T PF05152_consen 118 VWEPPHVIVFDLDSTLITDEGDVRIRDPAVYDSLRELKEQGCVLVLWSY---GNREHVRHSLKELKLEGYFDIIICGGNK 194 (297)
T ss_pred cCCCCcEEEEECCCcccccCCccccCChHHHHHHHHHHHcCCEEEEecC---CCHHHHHHHHHHhCCccccEEEEeCCcc
Confidence 345567899999 9996543 33 5578999999999977766665 3577888888888887556666655443
No 240
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=90.36 E-value=3.7 Score=31.65 Aligned_cols=88 Identities=19% Similarity=0.293 Sum_probs=54.5
Q ss_pred EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHH--HHHHHHhCCCCCCCeE
Q 022007 33 VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFA--AAMYLKVNNFPQENKV 110 (304)
Q Consensus 33 tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~--~~~~l~~~~~~~~~~v 110 (304)
|+-.+.+.++.+.+.|.+|.+. +.++++|+ -....+.+.++-.|+++. .++..+.. =+..+.+.+. +..++
T Consensus 24 tiatgGklf~ev~e~iqeL~d~-V~i~IASg---Dr~gsl~~lae~~gi~~~--rv~a~a~~e~K~~ii~eLkk-~~~k~ 96 (152)
T COG4087 24 TIATGGKLFSEVSETIQELHDM-VDIYIASG---DRKGSLVQLAEFVGIPVE--RVFAGADPEMKAKIIRELKK-RYEKV 96 (152)
T ss_pred EEccCcEEcHhhHHHHHHHHHh-heEEEecC---CcchHHHHHHHHcCCcee--eeecccCHHHHHHHHHHhcC-CCcEE
Confidence 7778999999999999999999 99999999 344555556666787643 23322211 1233444332 23456
Q ss_pred EEEcChhH-HHHHHHcCC
Q 022007 111 YVIGGEGI-LEELRQAGY 127 (304)
Q Consensus 111 ~~~g~~~~-~~~l~~~g~ 127 (304)
..+|...- .-.|+++.+
T Consensus 97 vmVGnGaND~laLr~ADl 114 (152)
T COG4087 97 VMVGNGANDILALREADL 114 (152)
T ss_pred EEecCCcchHHHhhhccc
Confidence 66665432 334555443
No 241
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=89.90 E-value=0.72 Score=38.63 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=33.4
Q ss_pred cCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 36 KGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 36 ~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
..-++.||+.++|+.|++++ +++++|| -........++++|++
T Consensus 65 ~~i~l~pga~ell~~lk~~~-~~~IVS~---~~~~~~~~il~~lgi~ 107 (203)
T TIGR02137 65 ATLKPLEGAVEFVDWLRERF-QVVILSD---TFYEFSQPLMRQLGFP 107 (203)
T ss_pred HhCCCCccHHHHHHHHHhCC-eEEEEeC---ChHHHHHHHHHHcCCc
Confidence 33468999999999999986 9999999 2334444567789997
No 242
>PRK11590 hypothetical protein; Provisional
Probab=89.83 E-value=0.74 Score=38.68 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=30.7
Q ss_pred ccCccHHHHH-HHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCC
Q 022007 39 KLIDGVRQTL-DVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGV 81 (304)
Q Consensus 39 ~~~~~a~eal-~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~ 81 (304)
.++||+.+.| +.|+++|++++++|| .+..-+...++.+|+
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSa---s~~~~~~~il~~l~~ 135 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITG---SPQPLVEQVYFDTPW 135 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeC---CcHHHHHHHHHHccc
Confidence 4589999999 578889999999999 444444455666775
No 243
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=89.67 E-value=0.82 Score=37.91 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=35.1
Q ss_pred cCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 36 KGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 36 ~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
....++||+.++|+.|+++ ++++++|| .........++++|++
T Consensus 65 ~~~~~~pg~~e~L~~L~~~-~~~~IvS~---~~~~~~~~~l~~~gl~ 107 (205)
T PRK13582 65 ATLDPLPGAVEFLDWLRER-FQVVILSD---TFYEFAGPLMRQLGWP 107 (205)
T ss_pred HhCCCCCCHHHHHHHHHhc-CCEEEEeC---CcHHHHHHHHHHcCCc
Confidence 4456799999999999999 99999999 4555566677888876
No 244
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=89.25 E-value=0.53 Score=44.31 Aligned_cols=42 Identities=21% Similarity=0.311 Sum_probs=32.9
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHc-CCeEEEEcc
Q 022007 230 MMEILSKKFQIASSRMCMVGDRLDTDILFGQNA-GCKTLLVLS 271 (304)
Q Consensus 230 ~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~a-G~~ti~V~~ 271 (304)
-...+.+.+|....++++|||++..||...+.. ||+|++|..
T Consensus 283 n~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~ 325 (448)
T PF05761_consen 283 NWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIP 325 (448)
T ss_dssp -HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE-T
T ss_pred CHHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEEeh
Confidence 456677778888889999999999999998887 999999944
No 245
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=89.17 E-value=2.2 Score=42.84 Aligned_cols=46 Identities=15% Similarity=0.139 Sum_probs=34.4
Q ss_pred HHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEE
Q 022007 234 LSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYY 291 (304)
Q Consensus 234 al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v 291 (304)
.++++| +=+.+.||+ .||-.+.+.|. |+|+||.+..+ ..+ ..+|.+
T Consensus 700 ~cQr~G---aiVaVTGDG-VNDsPALKKAD---IGVAMGiaGSD-vsK----qAADmI 745 (1019)
T KOG0203|consen 700 GCQRQG---AIVAVTGDG-VNDSPALKKAD---IGVAMGIAGSD-VSK----QAADMI 745 (1019)
T ss_pred hhhhcC---cEEEEeCCC-cCCChhhcccc---cceeeccccch-HHH----hhcceE
Confidence 356665 356788999 89999999999 99999987644 332 256665
No 246
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=89.00 E-value=1.2 Score=35.58 Aligned_cols=39 Identities=10% Similarity=-0.072 Sum_probs=28.2
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 40 LIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 40 ~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
..||+.++|++|++. +.+.++|| .++....+.++.++..
T Consensus 59 ~rPgv~efL~~l~~~-yel~I~T~---~~~~yA~~vl~~ldp~ 97 (156)
T TIGR02250 59 LRPFLHEFLKEASKL-YEMHVYTM---GTRAYAQAIAKLIDPD 97 (156)
T ss_pred ECCCHHHHHHHHHhh-cEEEEEeC---CcHHHHHHHHHHhCcC
Confidence 578999999999855 99999999 3344334445556554
No 247
>PLN02645 phosphoglycolate phosphatase
Probab=88.08 E-value=0.51 Score=42.33 Aligned_cols=89 Identities=11% Similarity=-0.045 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHHHHhhCCCC--cccCCCcHHHHHHHHHHcCCCC
Q 022007 166 NYYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEP--IVVGKPSTFMMEILSKKFQIAS 242 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~--~~~gKP~~~~~~~al~~lg~~~ 242 (304)
.+++..++++.|+++ |.+ +++||....... .+.+.+.. .|.+. ...-.+ .......++..+...
T Consensus 45 ~~~ga~e~l~~lr~~-g~~~~~~TN~~~~~~~----------~~~~~l~~-lGi~~~~~~I~ts-~~~~~~~l~~~~~~~ 111 (311)
T PLN02645 45 LIEGVPETLDMLRSM-GKKLVFVTNNSTKSRA----------QYGKKFES-LGLNVTEEEIFSS-SFAAAAYLKSINFPK 111 (311)
T ss_pred cCcCHHHHHHHHHHC-CCEEEEEeCCCCCCHH----------HHHHHHHH-CCCCCChhhEeeh-HHHHHHHHHhhccCC
Confidence 568899999999988 665 678986652211 12222221 22211 111111 234445555555544
Q ss_pred CcEEEEcCCchhhHHHHHHcCCeEEE
Q 022007 243 SRMCMVGDRLDTDILFGQNAGCKTLL 268 (304)
Q Consensus 243 ~~~~~IGD~~~~Di~~a~~aG~~ti~ 268 (304)
.+.++++++ ..+.+.++.+|+.++.
T Consensus 112 ~~~V~viG~-~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 112 DKKVYVIGE-EGILEELELAGFQYLG 136 (311)
T ss_pred CCEEEEEcC-HHHHHHHHHCCCEEec
Confidence 456777778 7899999999987654
No 248
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=87.98 E-value=0.79 Score=37.85 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=23.4
Q ss_pred EEcCCccCccHHHHHHHHHHCCCcEEEEeCCC
Q 022007 34 IWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNS 65 (304)
Q Consensus 34 L~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s 65 (304)
++..-.++|||.|+|++|.+.|+.++++|...
T Consensus 68 ~f~~l~p~~gA~e~l~~L~~~g~~~~~Itar~ 99 (191)
T PF06941_consen 68 FFSNLPPIPGAVEALKKLRDKGHEIVIITARP 99 (191)
T ss_dssp TTTT--B-TTHHHHHHHHHTSTTEEEEEEE-S
T ss_pred hhcCCCccHHHHHHHHHHHHcCCcEEEEEecC
Confidence 34455789999999999999998888888733
No 249
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=87.94 E-value=1.2 Score=37.53 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=22.8
Q ss_pred ccCccHHHHHH-HHHHCCCcEEEEeC
Q 022007 39 KLIDGVRQTLD-VLRSKGKKLIFVTN 63 (304)
Q Consensus 39 ~~~~~a~eal~-~L~~~G~~~~i~Tn 63 (304)
.++|++.+.|+ .++++|++++|+||
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSa 119 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITG 119 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcC
Confidence 46899999996 78889999999999
No 250
>PHA02597 30.2 hypothetical protein; Provisional
Probab=87.64 E-value=5.6 Score=32.67 Aligned_cols=31 Identities=13% Similarity=0.090 Sum_probs=23.7
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCH
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSR 69 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~ 69 (304)
..++||+.++|++|++++ +++++||.+..+.
T Consensus 73 ~~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~ 103 (197)
T PHA02597 73 LSAYDDALDVINKLKEDY-DFVAVTALGDSID 103 (197)
T ss_pred ccCCCCHHHHHHHHHhcC-CEEEEeCCccchh
Confidence 458999999999999875 5778888444333
No 251
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=86.01 E-value=22 Score=30.88 Aligned_cols=76 Identities=12% Similarity=0.154 Sum_probs=39.9
Q ss_pred HHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCC-CccCCCCeechHHHHHHHHHhCCCCCCCeEEEEcChhHH---
Q 022007 44 VRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLG-VSVSEDEIFSSSFAAAMYLKVNNFPQENKVYVIGGEGIL--- 119 (304)
Q Consensus 44 a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG-~~~~~~~i~~~~~~~~~~l~~~~~~~~~~v~~~g~~~~~--- 119 (304)
+....+.|.+.|++++..+= +.. -.+.+...| .++..+ .+.. ..+..++.++++. +.+-....+.
T Consensus 12 gr~la~~L~~~g~~v~~s~~----t~~-~~~~~~~~g~~~v~~g-~l~~-~~l~~~l~~~~i~----~VIDAtHPfA~~i 80 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVT----TSE-GKHLYPIHQALTVHTG-ALDP-QELREFLKRHSID----ILVDATHPFAAQI 80 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEc----cCC-ccccccccCCceEEEC-CCCH-HHHHHHHHhcCCC----EEEEcCCHHHHHH
Confidence 56777888889988765442 221 111222332 222211 1222 3366788877654 5555554443
Q ss_pred -----HHHHHcCCccc
Q 022007 120 -----EELRQAGYTGL 130 (304)
Q Consensus 120 -----~~l~~~g~~~~ 130 (304)
+..++.|++..
T Consensus 81 s~~a~~a~~~~~ipyl 96 (256)
T TIGR00715 81 TTNATAVCKELGIPYV 96 (256)
T ss_pred HHHHHHHHHHhCCcEE
Confidence 44566777664
No 252
>PRK08238 hypothetical protein; Validated
Probab=85.88 E-value=1.7 Score=41.46 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=32.6
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCC
Q 022007 40 LIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGV 81 (304)
Q Consensus 40 ~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~ 81 (304)
..|++.+.+++++++|++++++|| .+.......++.+|+
T Consensus 73 ~~pga~e~L~~lk~~G~~v~LaTa---s~~~~a~~i~~~lGl 111 (479)
T PRK08238 73 YNEEVLDYLRAERAAGRKLVLATA---SDERLAQAVAAHLGL 111 (479)
T ss_pred CChhHHHHHHHHHHCCCEEEEEeC---CCHHHHHHHHHHcCC
Confidence 568999999999999999999999 455555566777885
No 253
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=85.82 E-value=3.3 Score=37.27 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=29.7
Q ss_pred HHHHcCCCCCcEEEEcCCchhhHHHHH-HcCCeEEEEcc
Q 022007 234 LSKKFQIASSRMCMVGDRLDTDILFGQ-NAGCKTLLVLS 271 (304)
Q Consensus 234 al~~lg~~~~~~~~IGD~~~~Di~~a~-~aG~~ti~V~~ 271 (304)
.++.-|-.-.++++|||.+-+|+.... ..||+|..+-.
T Consensus 338 flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAII~ 376 (510)
T KOG2470|consen 338 FLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAIIP 376 (510)
T ss_pred HHHHhccCCCeeEEecCcchhhhhhhHhhcccccccchH
Confidence 333334556699999999999999988 89998887743
No 254
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=85.12 E-value=1.6 Score=35.39 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=25.6
Q ss_pred CcEEEEcCCchhhHHHHHHcCCeEEEEccC
Q 022007 243 SRMCMVGDRLDTDILFGQNAGCKTLLVLSG 272 (304)
Q Consensus 243 ~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G 272 (304)
.--++-||| .+||.+|+.+|++.|-+++-
T Consensus 185 ~~~IhYGDS-D~Di~AAkeaG~RgIRilRA 213 (237)
T COG3700 185 NIRIHYGDS-DNDITAAKEAGARGIRILRA 213 (237)
T ss_pred CceEEecCC-chhhhHHHhcCccceeEEec
Confidence 346899999 99999999999999998765
No 255
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=84.69 E-value=26 Score=30.45 Aligned_cols=70 Identities=17% Similarity=0.292 Sum_probs=53.6
Q ss_pred CCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHHHHHHHHhCCCCCCCeEEEEcChhHHHHHHHcCCcc
Q 022007 55 GKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFAAAMYLKVNNFPQENKVYVIGGEGILEELRQAGYTG 129 (304)
Q Consensus 55 G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~g~~~ 129 (304)
-+.|+++|.|+..+---+..-++..|++++. .+++++.....||+-.+.. .++-..........+.|+..
T Consensus 36 ~VEVVllSRNspdTGlRv~nSI~hygL~ItR-~~ft~G~~~~~Yl~af~v~----LFLSan~~DV~~Ai~~G~~A 105 (264)
T PF06189_consen 36 LVEVVLLSRNSPDTGLRVFNSIRHYGLDITR-AAFTGGESPYPYLKAFNVD----LFLSANEDDVQEAIDAGIPA 105 (264)
T ss_pred ceEEEEEecCCHHHHHHHHHhHHHhCCccee-eeecCCCCHHHHHHHhCCc----eEeeCCHHHHHHHHHcCCCc
Confidence 3568999998877777777888889999764 4678888888899987654 77777777777666778754
No 256
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=84.26 E-value=2.6 Score=42.58 Aligned_cols=90 Identities=19% Similarity=0.173 Sum_probs=59.5
Q ss_pred EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHHHHHHHHhCCCCCCCeEEE
Q 022007 33 VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFAAAMYLKVNNFPQENKVYV 112 (304)
Q Consensus 33 tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~~~~~~~~v~~ 112 (304)
.+.-.+.+.|++.++|++|++.|++++++|| ..........+++|++...+ .++..-. .++++.+ ++.++.+
T Consensus 562 ~i~l~d~~r~~a~~~i~~L~~~gi~~~llTG---d~~~~a~~ia~~lgi~~~~~--~~p~~K~-~~v~~l~--~~~~v~m 633 (741)
T PRK11033 562 LIALQDTLRADARQAISELKALGIKGVMLTG---DNPRAAAAIAGELGIDFRAG--LLPEDKV-KAVTELN--QHAPLAM 633 (741)
T ss_pred EEEEecCCchhHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHHHcCCCeecC--CCHHHHH-HHHHHHh--cCCCEEE
Confidence 4556778999999999999999999999999 66777777788899974322 2222111 1333222 1235777
Q ss_pred EcCh-hHHHHHHHcCCccc
Q 022007 113 IGGE-GILEELRQAGYTGL 130 (304)
Q Consensus 113 ~g~~-~~~~~l~~~g~~~~ 130 (304)
+|-. .....++.+++.+.
T Consensus 634 vGDgiNDapAl~~A~vgia 652 (741)
T PRK11033 634 VGDGINDAPAMKAASIGIA 652 (741)
T ss_pred EECCHHhHHHHHhCCeeEE
Confidence 7754 33457777776553
No 257
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=84.04 E-value=1.8 Score=35.25 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=30.5
Q ss_pred ccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 42 DGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 42 ~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
|++.+.|+.++++|++++|+|+ -+...+...++.+|++
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~---~~~~~i~~~~~~~~i~ 129 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSG---SPDEIIEPIAERLGID 129 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEE---EEHHHHHHHHHHTTSS
T ss_pred hhHHHHHHHHHHCCCEEEEECC---CcHHHHHHHHHHcCCC
Confidence 6666999999999999999998 3455555566678887
No 258
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=83.15 E-value=5.5 Score=41.84 Aligned_cols=27 Identities=41% Similarity=0.553 Sum_probs=24.3
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeC
Q 022007 37 GDKLIDGVRQTLDVLRSKGKKLIFVTN 63 (304)
Q Consensus 37 ~~~~~~~a~eal~~L~~~G~~~~i~Tn 63 (304)
.++.-.|+.|.|.+|++.|+++.++|+
T Consensus 649 EDkLQdgVPetI~~L~~AGIKIWVLTG 675 (1151)
T KOG0206|consen 649 EDKLQDGVPETIAKLAQAGIKIWVLTG 675 (1151)
T ss_pred echhccCchHHHHHHHHcCCEEEEEcC
Confidence 356778899999999999999999999
No 259
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=83.14 E-value=3.1 Score=31.06 Aligned_cols=62 Identities=23% Similarity=0.410 Sum_probs=42.2
Q ss_pred cCEEEEeE--EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc--cCCCCeech
Q 022007 25 VDAFLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS--VSEDEIFSS 91 (304)
Q Consensus 25 ~k~i~fDi--tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~--~~~~~i~~~ 91 (304)
++.+++|+ +-+-+..-+..-.+..+.++.+|++++++. ....+.+.|...|+. +..+.++.+
T Consensus 48 ~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~-----~~~~v~~~l~~~~~~~~~~~~~~~~s 113 (117)
T PF01740_consen 48 IKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVLVG-----LNPDVRRILERSGLIDFIPEDQIFPS 113 (117)
T ss_dssp SSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEEES-----HHHHHHHHHHHTTGHHHSCGGEEESS
T ss_pred ceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEE-----CCHHHHHHHHHcCCChhcCCCCccCC
Confidence 48999999 544333333333577788888999986554 367778889999986 444555544
No 260
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=83.10 E-value=3.6 Score=32.99 Aligned_cols=39 Identities=13% Similarity=0.038 Sum_probs=28.2
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 40 LIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 40 ~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
.-||+.++|+.|.+. +.++|.|++ ++......++.++..
T Consensus 43 ~RPgl~eFL~~l~~~-yei~I~Ts~---~~~yA~~il~~ldp~ 81 (162)
T TIGR02251 43 KRPHVDEFLERVSKW-YELVIFTAS---LEEYADPVLDILDRG 81 (162)
T ss_pred ECCCHHHHHHHHHhc-CEEEEEcCC---cHHHHHHHHHHHCcC
Confidence 358999999999987 999999993 333334455556643
No 261
>PRK10671 copA copper exporting ATPase; Provisional
Probab=82.95 E-value=6.2 Score=40.53 Aligned_cols=90 Identities=17% Similarity=0.121 Sum_probs=58.9
Q ss_pred EEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHHHHHHHHhCCCCCCCeEEEE
Q 022007 34 IWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFAAAMYLKVNNFPQENKVYVI 113 (304)
Q Consensus 34 L~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~~~~~~~~v~~~ 113 (304)
+...+.+.|++.++|+.|++.|++++++|+ .+.......++++|++--..++....+ .+.++..+.. ...++++
T Consensus 645 ~~l~d~~r~~a~~~i~~L~~~gi~v~~~Tg---d~~~~a~~ia~~lgi~~~~~~~~p~~K--~~~i~~l~~~-~~~v~~v 718 (834)
T PRK10671 645 LAIRDPLRSDSVAALQRLHKAGYRLVMLTG---DNPTTANAIAKEAGIDEVIAGVLPDGK--AEAIKRLQSQ-GRQVAMV 718 (834)
T ss_pred EEccCcchhhHHHHHHHHHHCCCeEEEEcC---CCHHHHHHHHHHcCCCEEEeCCCHHHH--HHHHHHHhhc-CCEEEEE
Confidence 445678899999999999999999999999 566666677788998732222221122 1233332221 2357777
Q ss_pred cCh-hHHHHHHHcCCcc
Q 022007 114 GGE-GILEELRQAGYTG 129 (304)
Q Consensus 114 g~~-~~~~~l~~~g~~~ 129 (304)
|-. .....++.+|+.+
T Consensus 719 GDg~nD~~al~~Agvgi 735 (834)
T PRK10671 719 GDGINDAPALAQADVGI 735 (834)
T ss_pred eCCHHHHHHHHhCCeeE
Confidence 665 3456778888754
No 262
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=82.92 E-value=2.4 Score=35.98 Aligned_cols=43 Identities=14% Similarity=0.267 Sum_probs=33.2
Q ss_pred EcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHH
Q 022007 35 WKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFH 77 (304)
Q Consensus 35 ~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~ 77 (304)
+......|||.+.++.|+..|+++.++|+.+..+.+...+.++
T Consensus 88 ~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~ 130 (222)
T KOG2914|consen 88 FMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHE 130 (222)
T ss_pred ccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhh
Confidence 3445678999999999999999999999955556555544443
No 263
>PRK11590 hypothetical protein; Provisional
Probab=82.53 E-value=0.41 Score=40.27 Aligned_cols=32 Identities=13% Similarity=-0.053 Sum_probs=25.6
Q ss_pred HHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCC
Q 022007 232 EILSKKFQIASSRMCMVGDRLDTDILFGQNAGC 264 (304)
Q Consensus 232 ~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~ 264 (304)
..+.+.++.+...+++-||| .+|+.|...+|-
T Consensus 166 ~~l~~~~~~~~~~~~aY~Ds-~~D~pmL~~a~~ 197 (211)
T PRK11590 166 AQLERKIGTPLRLYSGYSDS-KQDNPLLYFCQH 197 (211)
T ss_pred HHHHHHhCCCcceEEEecCC-cccHHHHHhCCC
Confidence 44444456677888999999 899999999993
No 264
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=81.74 E-value=4.7 Score=31.94 Aligned_cols=60 Identities=13% Similarity=0.235 Sum_probs=45.4
Q ss_pred ccCEEEEeE----EEEcCCccCccHHHHHHHHHHC-C-CcEEEEeCCCCcC----HHHHHHHHHh-CCCcc
Q 022007 24 SVDAFLFDC----VIWKGDKLIDGVRQTLDVLRSK-G-KKLIFVTNNSRRS----RRQYAHKFHS-LGVSV 83 (304)
Q Consensus 24 ~~k~i~fDi----tL~~~~~~~~~a~eal~~L~~~-G-~~~~i~Tn~s~r~----~~~~~~~l~~-lG~~~ 83 (304)
.+|+++||- |+-.+..+.|.-..-++++++. | +-++++||..+.+ ..+.++.|++ .|+++
T Consensus 42 ~ikavVlDKDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpV 112 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPV 112 (190)
T ss_pred CceEEEEcCCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCce
Confidence 799999998 5557778888888888888864 5 8899999976662 2455566664 78875
No 265
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=79.19 E-value=1.1 Score=35.67 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=27.4
Q ss_pred CEEEEeE--EEEcCCc--------------------cCccHHHHHHHHHHCCCcEEEEeCCC
Q 022007 26 DAFLFDC--VIWKGDK--------------------LIDGVRQTLDVLRSKGKKLIFVTNNS 65 (304)
Q Consensus 26 k~i~fDi--tL~~~~~--------------------~~~~a~eal~~L~~~G~~~~i~Tn~s 65 (304)
|+++||+ ||+.... .-||+.++|+.|.+ .+.+++.|.++
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~-~~ev~i~T~~~ 61 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSK-HYEVVIWTSAS 61 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHH-HCEEEEE-SS-
T ss_pred CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHH-hceEEEEEeeh
Confidence 5789999 8885321 46899999999954 59999999843
No 266
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=77.03 E-value=6.8 Score=33.63 Aligned_cols=49 Identities=20% Similarity=0.267 Sum_probs=43.1
Q ss_pred cccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccC
Q 022007 221 IVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSG 272 (304)
Q Consensus 221 ~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G 272 (304)
...|| ...|+.+.+++|-+.-.-++|||+ ..--.+|+..+|+.+-|.+.
T Consensus 211 ~kvGK--~~cFe~I~~Rfg~p~~~f~~IGDG-~eEe~aAk~l~wPFw~I~~h 259 (274)
T TIGR01658 211 IKVGK--LQCFKWIKERFGHPKVRFCAIGDG-WEECTAAQAMNWPFVKIDLH 259 (274)
T ss_pred hhcch--HHHHHHHHHHhCCCCceEEEeCCC-hhHHHHHHhcCCCeEEeecC
Confidence 34677 889999999999877899999999 78889999999999988664
No 267
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=76.72 E-value=5.4 Score=39.76 Aligned_cols=90 Identities=22% Similarity=0.178 Sum_probs=58.5
Q ss_pred EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechH-HH-HHHHHHhCCCCCCCeE
Q 022007 33 VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSS-FA-AAMYLKVNNFPQENKV 110 (304)
Q Consensus 33 tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~-~~-~~~~l~~~~~~~~~~v 110 (304)
++.-.+.+-|++++++++|++.|++++++|+ -.........+++|++--..++ +|. +. ..+-+++.+ ..+
T Consensus 440 ~i~l~D~~Rp~a~eaI~~l~~~Gi~v~miTG---D~~~ta~~iA~~lGI~~v~a~~-~PedK~~~v~~lq~~g----~~V 511 (675)
T TIGR01497 440 VIYLKDIVKGGIKERFAQLRKMGIKTIMITG---DNRLTAAAIAAEAGVDDFIAEA-TPEDKIALIRQEQAEG----KLV 511 (675)
T ss_pred EEEecccchhHHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHHHcCCCEEEcCC-CHHHHHHHHHHHHHcC----CeE
Confidence 5556778899999999999999999999999 5566666677789986211111 222 11 112223222 357
Q ss_pred EEEcCh-hHHHHHHHcCCccc
Q 022007 111 YVIGGE-GILEELRQAGYTGL 130 (304)
Q Consensus 111 ~~~g~~-~~~~~l~~~g~~~~ 130 (304)
.+.|-. .....|+++++.+.
T Consensus 512 amvGDG~NDapAL~~AdvGiA 532 (675)
T TIGR01497 512 AMTGDGTNDAPALAQADVGVA 532 (675)
T ss_pred EEECCCcchHHHHHhCCEeEE
Confidence 777665 34567788776553
No 268
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=76.36 E-value=2.9 Score=35.81 Aligned_cols=51 Identities=31% Similarity=0.371 Sum_probs=37.0
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHH
Q 022007 39 KLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSF 93 (304)
Q Consensus 39 ~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~ 93 (304)
...++..+++++||++|..+.++||-..|- ...+..+|+....|.++.|..
T Consensus 113 ~~~~~~~~~lq~lR~~g~~l~iisN~d~r~----~~~l~~~~l~~~fD~vv~S~e 163 (237)
T KOG3085|consen 113 KYLDGMQELLQKLRKKGTILGIISNFDDRL----RLLLLPLGLSAYFDFVVESCE 163 (237)
T ss_pred eeccHHHHHHHHHHhCCeEEEEecCCcHHH----HHHhhccCHHHhhhhhhhhhh
Confidence 356788899999999998889999933222 255667888766676666643
No 269
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=76.28 E-value=10 Score=34.77 Aligned_cols=55 Identities=20% Similarity=0.315 Sum_probs=37.1
Q ss_pred ccCEEEEeE--EEEcCC-ccCcc--HHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHh
Q 022007 24 SVDAFLFDC--VIWKGD-KLIDG--VRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHS 78 (304)
Q Consensus 24 ~~k~i~fDi--tL~~~~-~~~~~--a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~ 78 (304)
..|.+-||- |||... .+.++ ...-|-+|-++|+.|.|||-.+=-....+.++|..
T Consensus 146 ~L~LvTFDgDvTLY~DG~sl~~d~pvi~~ii~LL~~gv~VgIVTAAGY~~a~kY~~RL~G 205 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYEDGASLEPDNPVIPRIIKLLRRGVKVGIVTAAGYPGAEKYEERLHG 205 (408)
T ss_pred CceEEEEcCCcccccCCCCCCCCchHHHHHHHHHhcCCeEEEEeCCCCCChHHHHHHHHH
Confidence 577999999 999654 44443 34555566678999999997433335566666543
No 270
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=76.19 E-value=7.4 Score=38.83 Aligned_cols=89 Identities=20% Similarity=0.144 Sum_probs=55.4
Q ss_pred EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHHH--HHHHHhCCCCCCCeE
Q 022007 33 VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFAA--AMYLKVNNFPQENKV 110 (304)
Q Consensus 33 tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~--~~~l~~~~~~~~~~v 110 (304)
.+.-.+.+-|++++++++|++.|++++++|+ =.+.......+++|++--..+ .+|..-. ..-+++.| +.|
T Consensus 439 ~i~l~D~~R~~~~eai~~Lr~~GI~vvMiTG---Dn~~TA~aIA~elGId~v~A~-~~PedK~~iV~~lQ~~G----~~V 510 (679)
T PRK01122 439 VIYLKDIVKPGIKERFAELRKMGIKTVMITG---DNPLTAAAIAAEAGVDDFLAE-ATPEDKLALIRQEQAEG----RLV 510 (679)
T ss_pred EEEEeccCchhHHHHHHHHHHCCCeEEEECC---CCHHHHHHHHHHcCCcEEEcc-CCHHHHHHHHHHHHHcC----CeE
Confidence 5556778899999999999999999999999 455555666677898621111 1222111 12233322 346
Q ss_pred EEEcCh-hHHHHHHHcCCcc
Q 022007 111 YVIGGE-GILEELRQAGYTG 129 (304)
Q Consensus 111 ~~~g~~-~~~~~l~~~g~~~ 129 (304)
.+.|-. ...-.|+++++-+
T Consensus 511 aMtGDGvNDAPALa~ADVGI 530 (679)
T PRK01122 511 AMTGDGTNDAPALAQADVGV 530 (679)
T ss_pred EEECCCcchHHHHHhCCEeE
Confidence 666654 2345677776544
No 271
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=75.54 E-value=34 Score=29.40 Aligned_cols=36 Identities=14% Similarity=0.302 Sum_probs=22.3
Q ss_pred cCccHHHHHHHHHHC--CCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 40 LIDGVRQTLDVLRSK--GKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 40 ~~~~a~eal~~L~~~--G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
..-|..+..+.+++. |+++. .+...+.+-|+.+|..
T Consensus 84 ~~~G~~~~~~~i~~~~~g~p~t-------t~~~A~~~AL~alg~~ 121 (239)
T TIGR02990 84 VVIGDDEVTRAINAAKPGTPVV-------TPSSAAVDGLAALGVR 121 (239)
T ss_pred eecCHHHHHHHHHhcCCCCCee-------CHHHHHHHHHHHcCCC
Confidence 445566667777652 55542 2456677778888775
No 272
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=75.20 E-value=6.3 Score=39.27 Aligned_cols=89 Identities=19% Similarity=0.144 Sum_probs=56.6
Q ss_pred EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHH--HHHHHHhCCCCCCCeE
Q 022007 33 VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFA--AAMYLKVNNFPQENKV 110 (304)
Q Consensus 33 tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~--~~~~l~~~~~~~~~~v 110 (304)
++.-.+.+-|++++++++||+.|++++.+|+ -.+......-+++|++--..++ +|..- +.+.+++.| +.|
T Consensus 435 ~i~l~Dp~R~~a~e~I~~Lr~~GI~vvMiTG---Dn~~TA~aIA~elGI~~v~A~~-~PedK~~iV~~lQ~~G----~~V 506 (673)
T PRK14010 435 VIYLKDVIKDGLVERFRELREMGIETVMCTG---DNELTAATIAKEAGVDRFVAEC-KPEDKINVIREEQAKG----HIV 506 (673)
T ss_pred EEEeecCCcHHHHHHHHHHHHCCCeEEEECC---CCHHHHHHHHHHcCCceEEcCC-CHHHHHHHHHHHHhCC----CEE
Confidence 4455678899999999999999999999999 5666666677789986211121 22221 122333332 346
Q ss_pred EEEcCh-hHHHHHHHcCCcc
Q 022007 111 YVIGGE-GILEELRQAGYTG 129 (304)
Q Consensus 111 ~~~g~~-~~~~~l~~~g~~~ 129 (304)
...|-. ...-.|+++++-+
T Consensus 507 aMtGDGvNDAPALa~ADVGI 526 (673)
T PRK14010 507 AMTGDGTNDAPALAEANVGL 526 (673)
T ss_pred EEECCChhhHHHHHhCCEEE
Confidence 555544 2345777776544
No 273
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=74.91 E-value=5.3 Score=30.22 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=28.6
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHH
Q 022007 37 GDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAH 74 (304)
Q Consensus 37 ~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~ 74 (304)
..+--+...++++.++++|.+++.+|++..-+..++.+
T Consensus 56 ~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad 93 (128)
T cd05014 56 NSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSD 93 (128)
T ss_pred CCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCC
Confidence 33455667899999999999999999976666555443
No 274
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=73.80 E-value=23 Score=35.18 Aligned_cols=114 Identities=18% Similarity=0.261 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHcCCCceEEEecCCCccCCCCCccccChHHH-HHHHHHhhCCCCcccCC--C--cHHHHHHHHHHcCCCC
Q 022007 168 YKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCM-VAAMCASTEKEPIVVGK--P--STFMMEILSKKFQIAS 242 (304)
Q Consensus 168 ~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l-~~~~~~~~~~~~~~~gK--P--~~~~~~~al~~lg~~~ 242 (304)
.+...-++.++..++.-++........ . ...+ .++++-+.....+.+.. | ++.+.+.+-++-|
T Consensus 714 ~dah~eL~~lR~k~~~aLvi~G~Sl~~-------c--l~yye~Ef~el~~~~~aVv~CRctPtQKA~v~~llq~~t~--- 781 (1051)
T KOG0210|consen 714 GDAHNELNNLRRKTDCALVIDGESLEF-------C--LKYYEDEFIELVCELPAVVCCRCTPTQKAQVVRLLQKKTG--- 781 (1051)
T ss_pred hHHHHHHHHhhcCCCcEEEEcCchHHH-------H--HHHHHHHHHHHHHhcCcEEEEecChhHHHHHHHHHHHhhC---
Confidence 445555667776544444433322200 0 1112 23334444444433332 2 2344555444444
Q ss_pred CcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhh
Q 022007 243 SRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELL 302 (304)
Q Consensus 243 ~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l 302 (304)
.++.+|||+ .||+-|.++|.+. |++..-.++... ..+||-+..+..+.++|
T Consensus 782 krvc~IGDG-GNDVsMIq~A~~G-iGI~gkEGkQAS-------LAADfSItqF~Hv~rLL 832 (1051)
T KOG0210|consen 782 KRVCAIGDG-GNDVSMIQAADVG-IGIVGKEGKQAS-------LAADFSITQFSHVSRLL 832 (1051)
T ss_pred ceEEEEcCC-Cccchheeecccc-eeeecccccccc-------hhccccHHHHHHHHHHh
Confidence 699999999 9999999887611 333322222222 35788777776666554
No 275
>COG4996 Predicted phosphatase [General function prediction only]
Probab=73.77 E-value=9.5 Score=29.44 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=30.0
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCcc
Q 022007 41 IDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSV 83 (304)
Q Consensus 41 ~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~ 83 (304)
+|..++.+..+|..|+-+-.+|= -.+....+.|+.+|+..
T Consensus 43 ~~~v~~~l~warnsG~i~~~~sW---N~~~kA~~aLral~~~~ 82 (164)
T COG4996 43 FPDVKETLKWARNSGYILGLASW---NFEDKAIKALRALDLLQ 82 (164)
T ss_pred cHHHHHHHHHHHhCCcEEEEeec---CchHHHHHHHHHhchhh
Confidence 67788999999999987666653 34566667788888764
No 276
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=73.18 E-value=3.8 Score=33.20 Aligned_cols=49 Identities=27% Similarity=0.557 Sum_probs=32.9
Q ss_pred hHHHhhh---ccCEEEEeE-EEEcCCccCc-------cH----HHHHHHHHHCCCcEEEEeCCC
Q 022007 17 NITALFD---SVDAFLFDC-VIWKGDKLID-------GV----RQTLDVLRSKGKKLIFVTNNS 65 (304)
Q Consensus 17 ~~~~~~~---~~k~i~fDi-tL~~~~~~~~-------~a----~eal~~L~~~G~~~~i~Tn~s 65 (304)
++.+.+. +.++|++|+ |.|..+.... .. .+.++.|++.+..++++||..
T Consensus 63 ~l~~~l~~~~~~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~viVsnEv 126 (169)
T cd00544 63 DLVSALKELDPGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILVSNEV 126 (169)
T ss_pred HHHHHHHhcCCCCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCCcEEEEECCc
Confidence 4555553 456899999 7775444332 12 247778888999999999943
No 277
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=71.36 E-value=11 Score=34.44 Aligned_cols=69 Identities=10% Similarity=0.109 Sum_probs=45.2
Q ss_pred cchhhHHHhhhccCEEE-EeEEEEcCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 13 LSANNITALFDSVDAFL-FDCVIWKGDK-LIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 13 ~~~~~~~~~~~~~k~i~-fDitL~~~~~-~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
++.+.+.+++++.+-.- ..+++.-|+. ..|+..+.++.+++.|+.+.+.||++..+. +..+.|.+.|++
T Consensus 37 l~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~~~~ii~~~~~~g~~~~l~TNG~ll~~-e~~~~L~~~g~~ 107 (358)
T TIGR02109 37 LTTEEWTDVLTQAAELGVLQLHFSGGEPLARPDLVELVAHARRLGLYTNLITSGVGLTE-ARLDALADAGLD 107 (358)
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEeCccccccccHHHHHHHHHHcCCeEEEEeCCccCCH-HHHHHHHhCCCC
Confidence 45666666766543221 1113333333 356788999999999999999999776664 456677777765
No 278
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=70.93 E-value=1.5 Score=36.88 Aligned_cols=33 Identities=12% Similarity=-0.028 Sum_probs=25.4
Q ss_pred HHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCe
Q 022007 232 EILSKKFQIASSRMCMVGDRLDTDILFGQNAGCK 265 (304)
Q Consensus 232 ~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ 265 (304)
..+.+.++.+.+.+++-||| .+|+.|...+|-.
T Consensus 165 ~rl~~~~~~~~~~~~aYsDS-~~D~pmL~~a~~~ 197 (210)
T TIGR01545 165 AQLEQKIGSPLKLYSGYSDS-KQDNPLLAFCEHR 197 (210)
T ss_pred HHHHHHhCCChhheEEecCC-cccHHHHHhCCCc
Confidence 33444456566788999999 8999999999943
No 279
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=69.44 E-value=5.1 Score=34.15 Aligned_cols=46 Identities=17% Similarity=-0.001 Sum_probs=29.8
Q ss_pred CcHHHHHHHHHHcCCC---CCcEEEEcCCchhhHHHHHHcCCe-----EEEEccC
Q 022007 226 PSTFMMEILSKKFQIA---SSRMCMVGDRLDTDILFGQNAGCK-----TLLVLSG 272 (304)
Q Consensus 226 P~~~~~~~al~~lg~~---~~~~~~IGD~~~~Di~~a~~aG~~-----ti~V~~G 272 (304)
.+..+++.+++.++.. +.-++++||+ .+|-.|-+.+.-. ++.|.++
T Consensus 165 ~KG~av~~ll~~~~~~~~~~~~~l~~GDD-~tDE~~f~~~~~~~~~~~~i~V~~~ 218 (235)
T PF02358_consen 165 NKGSAVRRLLEELPFAGPKPDFVLYIGDD-RTDEDAFRALRELEEGGFGIKVGSV 218 (235)
T ss_dssp -HHHHHHHHHTTS---------EEEEESS-HHHHHHHHTTTTS----EEEEES--
T ss_pred ChHHHHHHHHHhcCccccccceeEEecCC-CCCHHHHHHHHhcccCCCCeEEEee
Confidence 3577888888888765 7789999999 8999999886553 4555444
No 280
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=69.04 E-value=9.3 Score=28.75 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=24.2
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCcCHH
Q 022007 39 KLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRR 70 (304)
Q Consensus 39 ~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~ 70 (304)
.--+...++++.++++|.+++.+|++..-+..
T Consensus 57 G~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la 88 (126)
T cd05008 57 GETADTLAALRLAKEKGAKTVAITNVVGSTLA 88 (126)
T ss_pred cCCHHHHHHHHHHHHcCCeEEEEECCCCChHH
Confidence 34456789999999999999999996443333
No 281
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=67.97 E-value=17 Score=26.45 Aligned_cols=54 Identities=9% Similarity=0.214 Sum_probs=35.6
Q ss_pred ccCEEEEeE--EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 24 SVDAFLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 24 ~~k~i~fDi--tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
..+.+++|+ |-+-+..-+..-.+.++.++++|+.+.++. ....+.+.|+..|+.
T Consensus 38 ~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l~l~~-----~~~~v~~~l~~~gl~ 93 (106)
T TIGR02886 38 PIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEVIVCN-----VSPAVKRLFELSGLF 93 (106)
T ss_pred CCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEEEEEe-----CCHHHHHHHHHhCCc
Confidence 468899999 444222222223467888899999886554 356677778778875
No 282
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=67.85 E-value=15 Score=28.63 Aligned_cols=68 Identities=22% Similarity=0.415 Sum_probs=44.8
Q ss_pred CCCCCCCccc-cchhhHHHhhhc--cCEEEEeE----EEEcCCccCccHHHHHHHHHH----CCCcEEEEeCCCCcCHHH
Q 022007 3 GQNGQAPAEL-LSANNITALFDS--VDAFLFDC----VIWKGDKLIDGVRQTLDVLRS----KGKKLIFVTNNSRRSRRQ 71 (304)
Q Consensus 3 ~~~~~~~~~~-~~~~~~~~~~~~--~k~i~fDi----tL~~~~~~~~~a~eal~~L~~----~G~~~~i~Tn~s~r~~~~ 71 (304)
|.+.=.|+.+ .-.+.+.+++.+ .++|++|+ ++++| ++.+.++|..||+ +|-.++++.+.......+
T Consensus 51 ~~~~I~Pt~L~~l~~~i~~fl~~~~~~vViiD~lEYL~l~Ng---F~~v~KFL~~LkD~~~~~~~~lIl~~~~~al~ere 127 (136)
T PF05763_consen 51 GENAISPTNLHKLLDTIVRFLKENGNGVVIIDGLEYLILENG---FESVLKFLASLKDYALLNNGTLILVVDPEALDERE 127 (136)
T ss_pred CCCccCchhhHHHHHHHHHHHHhCCCcEEEEecHHHHHHHcC---HHHHHHHHHHhHHHeeccCCEEEEEEChhhcCHHH
Confidence 4444556666 233456667776 88999998 77777 6667899999985 455566777744445544
Q ss_pred HH
Q 022007 72 YA 73 (304)
Q Consensus 72 ~~ 73 (304)
+.
T Consensus 128 ~~ 129 (136)
T PF05763_consen 128 WA 129 (136)
T ss_pred HH
Confidence 43
No 283
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=66.59 E-value=27 Score=25.01 Aligned_cols=63 Identities=16% Similarity=0.126 Sum_probs=36.1
Q ss_pred chhhHHHhhhccCEEEEeEEEEcCCccCccHHHHHHHHHHC--CCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 14 SANNITALFDSVDAFLFDCVIWKGDKLIDGVRQTLDVLRSK--GKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 14 ~~~~~~~~~~~~k~i~fDitL~~~~~~~~~a~eal~~L~~~--G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
+.++....+.+.+ +|+++.+....--...+.++.|+.. +.+++++|+. ..........+.|++
T Consensus 31 ~~~~~~~~~~~~~---~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~---~~~~~~~~~~~~g~~ 95 (112)
T PF00072_consen 31 SGEEALELLKKHP---PDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDE---DDSDEVQEALRAGAD 95 (112)
T ss_dssp SHHHHHHHHHHST---ESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESS---TSHHHHHHHHHTTES
T ss_pred CHHHHHHHhcccC---ceEEEEEeeeccccccccccccccccccccEEEecCC---CCHHHHHHHHHCCCC
Confidence 3444445555444 6665555433334567888888874 4788999973 333333444467765
No 284
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=65.80 E-value=20 Score=26.15 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=35.8
Q ss_pred ccCEEEEeE--EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCcc
Q 022007 24 SVDAFLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSV 83 (304)
Q Consensus 24 ~~k~i~fDi--tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~ 83 (304)
..+.+++|+ +-+-+..-+.--.+..++++.+|..+.++-- ..++.+.|+..|++.
T Consensus 40 ~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~-----~~~v~~~l~~~gl~~ 96 (109)
T cd07041 40 RARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTGI-----RPEVAQTLVELGIDL 96 (109)
T ss_pred CCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeC-----CHHHHHHHHHhCCCh
Confidence 568899999 4332222222224777788889988865543 456777888888764
No 285
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=65.21 E-value=10 Score=30.65 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=25.2
Q ss_pred EEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcC
Q 022007 34 IWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRS 68 (304)
Q Consensus 34 L~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~ 68 (304)
+.....--+...++++.++++|.+++.+|++..-+
T Consensus 107 ~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~ 141 (177)
T cd05006 107 GISTSGNSPNVLKALEAAKERGMKTIALTGRDGGK 141 (177)
T ss_pred EEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 33444555667888999999999999999854433
No 286
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=65.03 E-value=15 Score=27.72 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=25.1
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHH
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRR 70 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~ 70 (304)
..--+...++++.++++|.+++.+|++..-+..
T Consensus 57 SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la 89 (120)
T cd05710 57 SGNTKETVAAAKFAKEKGATVIGLTDDEDSPLA 89 (120)
T ss_pred CCCChHHHHHHHHHHHcCCeEEEEECCCCCcHH
Confidence 334556789999999999999999995544433
No 287
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=64.89 E-value=32 Score=26.73 Aligned_cols=53 Identities=11% Similarity=0.109 Sum_probs=34.0
Q ss_pred EEeE---EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 29 LFDC---VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 29 ~fDi---tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
++|+ +|+....---+-.+.++.+.+.|+|++++|. -..+++.+.+.-..++-.
T Consensus 47 ildL~G~~l~l~S~R~~~~~evi~~I~~~G~PviVAtD-V~p~P~~V~Kia~~f~A~ 102 (138)
T PF04312_consen 47 ILDLDGELLDLKSSRNMSRSEVIEWISEYGKPVIVATD-VSPPPETVKKIARSFNAV 102 (138)
T ss_pred EEecCCcEEEEEeecCCCHHHHHHHHHHcCCEEEEEec-CCCCcHHHHHHHHHhCCc
Confidence 5666 3332222222357889999999999999998 335566555555556654
No 288
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=64.52 E-value=12 Score=28.35 Aligned_cols=31 Identities=13% Similarity=0.327 Sum_probs=23.4
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCCcCHHH
Q 022007 41 IDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQ 71 (304)
Q Consensus 41 ~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~ 71 (304)
-+...++++.++++|.+++.+|++...+...
T Consensus 73 ~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~ 103 (139)
T cd05013 73 TKETVEAAEIAKERGAKVIAITDSANSPLAK 103 (139)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCCCChhHH
Confidence 3456788899999999999999865544443
No 289
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=64.38 E-value=13 Score=30.14 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=27.6
Q ss_pred cCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHH
Q 022007 36 KGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYA 73 (304)
Q Consensus 36 ~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~ 73 (304)
...+--+...++++.++++|.+++.+|++..-+...+.
T Consensus 80 S~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~a 117 (179)
T TIGR03127 80 SGSGETESLVTVAKKAKEIGATVAAITTNPESTLGKLA 117 (179)
T ss_pred eCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhC
Confidence 33344556789999999999999999996555555433
No 290
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=64.35 E-value=16 Score=37.92 Aligned_cols=55 Identities=11% Similarity=0.215 Sum_probs=42.3
Q ss_pred cCEEEEeE--EEEcCC---------------ccCccHHHHHHHHHHC-CCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 25 VDAFLFDC--VIWKGD---------------KLIDGVRQTLDVLRSK-GKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 25 ~k~i~fDi--tL~~~~---------------~~~~~a~eal~~L~~~-G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
..++|||. ||.... .+.|+..++|+.|.+. +..|+|+|+ |+.+.+.+.+..+++.
T Consensus 591 ~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSG---R~~~~Le~~fg~~~L~ 663 (934)
T PLN03064 591 NRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSG---SDRSVLDENFGEFDMW 663 (934)
T ss_pred ceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeC---CCHHHHHHHhCCCCce
Confidence 35889999 997421 1345678999999865 678999999 9999999998776554
No 291
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=63.65 E-value=35 Score=28.09 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=25.4
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCc
Q 022007 39 KLIDGVRQTLDVLRSKGKKLIFVTNNSRR 67 (304)
Q Consensus 39 ~~~~~a~eal~~L~~~G~~~~i~Tn~s~r 67 (304)
+.+|+|.++|++-++.|.++.|-|.+|..
T Consensus 103 hlypDav~~ik~wk~~g~~vyiYSSGSV~ 131 (229)
T COG4229 103 HLYPDAVQAIKRWKALGMRVYIYSSGSVK 131 (229)
T ss_pred ccCHhHHHHHHHHHHcCCcEEEEcCCCch
Confidence 47999999999999999999999986543
No 292
>PRK04296 thymidine kinase; Provisional
Probab=63.55 E-value=42 Score=27.55 Aligned_cols=93 Identities=13% Similarity=0.145 Sum_probs=45.6
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHcCCCceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCC--cccCCCcHHHHH
Q 022007 155 GAVVVGLDPHINYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEP--IVVGKPSTFMME 232 (304)
Q Consensus 155 ~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~--~~~gKP~~~~~~ 232 (304)
+.|++.....+.-..+.+.++.++.. +..++++..+..+. +..+.....+....+.++-... ..+|+|.+-.++
T Consensus 80 dvviIDEaq~l~~~~v~~l~~~l~~~-g~~vi~tgl~~~~~---~~~f~~~~~L~~~aD~V~~l~~vC~~Cg~~a~~~~r 155 (190)
T PRK04296 80 DCVLIDEAQFLDKEQVVQLAEVLDDL-GIPVICYGLDTDFR---GEPFEGSPYLLALADKVTELKAICVHCGRKATMNQR 155 (190)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHHc-CCeEEEEecCcccc---cCcCchHHHHHHhcCeEEEeeEEccccCCccceEEE
Confidence 44444443344444466677776665 88888887665321 1223333345555555443322 245554433322
Q ss_pred HHHHHcCCCCCcEEEEcCC
Q 022007 233 ILSKKFQIASSRMCMVGDR 251 (304)
Q Consensus 233 ~al~~lg~~~~~~~~IGD~ 251 (304)
..-..--+.-++.+.|||+
T Consensus 156 ~~~~~~~~~~~~~~~ig~~ 174 (190)
T PRK04296 156 LIDGGPAVYEGPQVLVGGN 174 (190)
T ss_pred EeCCCCccCCCCEEEECCc
Confidence 2210000123478888986
No 293
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=63.48 E-value=6.1 Score=32.38 Aligned_cols=69 Identities=16% Similarity=0.144 Sum_probs=39.9
Q ss_pred cccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCC-CCCCCCCcEEECCHHHHH
Q 022007 221 IVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQD-PSNNIQPDYYTNQVSDIL 299 (304)
Q Consensus 221 ~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~-~~~~~~pd~v~~~l~el~ 299 (304)
..+|-.++..++... -+++.++|+||+ .+|+.+|+..- ++.+.- ++.. .+.+..+..-.+++.|+.
T Consensus 142 s~fG~dK~~vI~~l~----e~~e~~fy~GDs-vsDlsaaklsD---llFAK~-----~L~nyc~eqn~~f~~fe~F~eIl 208 (220)
T COG4359 142 SQFGHDKSSVIHELS----EPNESIFYCGDS-VSDLSAAKLSD---LLFAKD-----DLLNYCREQNLNFLEFETFYEIL 208 (220)
T ss_pred cccCCCcchhHHHhh----cCCceEEEecCC-cccccHhhhhh---hHhhHH-----HHHHHHHHcCCCCcccccHHHHH
Confidence 333433455555543 356789999999 89999999988 433221 1111 111123444567777776
Q ss_pred Hhh
Q 022007 300 ELL 302 (304)
Q Consensus 300 ~~l 302 (304)
.-+
T Consensus 209 k~i 211 (220)
T COG4359 209 KEI 211 (220)
T ss_pred HHH
Confidence 544
No 294
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=63.38 E-value=17 Score=27.28 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=24.5
Q ss_pred cCCccCccHHHHHHHHHHCCCcEEEEeCCCCcC
Q 022007 36 KGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRS 68 (304)
Q Consensus 36 ~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~ 68 (304)
....--....+.++.++++|.+++.+|++..-+
T Consensus 61 s~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~ 93 (131)
T PF01380_consen 61 SYSGETRELIELLRFAKERGAPVILITSNSESP 93 (131)
T ss_dssp ESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSH
T ss_pred eccccchhhhhhhHHHHhcCCeEEEEeCCCCCc
Confidence 333444567899999999999999999854433
No 295
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=63.29 E-value=58 Score=28.56 Aligned_cols=89 Identities=10% Similarity=0.026 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHHHHhhCCCC--cccCCCcHHHHHHHHHHcC
Q 022007 163 PHINYYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEP--IVVGKPSTFMMEILSKKFQ 239 (304)
Q Consensus 163 ~~~~~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~--~~~gKP~~~~~~~al~~lg 239 (304)
..-.+++..++++.|+++ |.+ +++||.....+. .+.+.+....+.+. ...--+.-..-.++.+..
T Consensus 22 G~~~ipga~e~l~~L~~~-g~~~iflTNn~~~s~~----------~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~- 89 (269)
T COG0647 22 GNEAIPGAAEALKRLKAA-GKPVIFLTNNSTRSRE----------VVAARLSSLGGVDVTPDDIVTSGDATADYLAKQK- 89 (269)
T ss_pred CCccCchHHHHHHHHHHc-CCeEEEEeCCCCCCHH----------HHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhC-
Confidence 355689999999999988 666 557997773322 13344444222211 111111222333333322
Q ss_pred CCCCcEEEEcCCchhhHHHHHHcCCeE
Q 022007 240 IASSRMCMVGDRLDTDILFGQNAGCKT 266 (304)
Q Consensus 240 ~~~~~~~~IGD~~~~Di~~a~~aG~~t 266 (304)
++..+++||.. .+.+..+.+|+..
T Consensus 90 -~~~kv~viG~~--~l~~~l~~~G~~~ 113 (269)
T COG0647 90 -PGKKVYVIGEE--GLKEELEGAGFEL 113 (269)
T ss_pred -CCCEEEEECCc--chHHHHHhCCcEE
Confidence 33789999966 6788899999443
No 296
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=63.13 E-value=19 Score=33.17 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=44.9
Q ss_pred ccchhhHHHhhhccCEEEEeE--EEEcCCc--cCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 12 LLSANNITALFDSVDAFLFDC--VIWKGDK--LIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 12 ~~~~~~~~~~~~~~k~i~fDi--tL~~~~~--~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
..+.+.+.+++++.+- +.+ +.+.|.. ..|+..+.++.++++|+.+.+.||++..+.+ ..+.|.+.|++
T Consensus 45 ~~~~e~~~~ii~~~~~--~g~~~v~~~GGEPll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~-~~~~L~~~g~~ 116 (378)
T PRK05301 45 ELSTEEWIRVLREARA--LGALQLHFSGGEPLLRKDLEELVAHARELGLYTNLITSGVGLTEA-RLAALKDAGLD 116 (378)
T ss_pred CCCHHHHHHHHHHHHH--cCCcEEEEECCccCCchhHHHHHHHHHHcCCcEEEECCCccCCHH-HHHHHHHcCCC
Confidence 3555666666664322 112 2333443 3467889999999999999999997766655 45677777765
No 297
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=62.60 E-value=21 Score=26.70 Aligned_cols=68 Identities=19% Similarity=0.208 Sum_probs=37.9
Q ss_pred chhhHHHhhhc-cCEEEEeE-EE--EcCCccCccHH--------------HHHHHHH---HCCCcEEEEeCCCCcCHHHH
Q 022007 14 SANNITALFDS-VDAFLFDC-VI--WKGDKLIDGVR--------------QTLDVLR---SKGKKLIFVTNNSRRSRRQY 72 (304)
Q Consensus 14 ~~~~~~~~~~~-~k~i~fDi-tL--~~~~~~~~~a~--------------eal~~L~---~~G~~~~i~Tn~s~r~~~~~ 72 (304)
+.+.+.+++.+ -+.+++|+ +- +.+...+|||. +....+. ....+++++.+ ++......
T Consensus 2 s~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~ivv~C~-~G~rs~~a 80 (117)
T cd01522 2 TPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDMEINPNFLAELEEKVGKDRPVLLLCR-SGNRSIAA 80 (117)
T ss_pred CHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhccccccCHHHHHHHHhhCCCCCeEEEEcC-CCccHHHH
Confidence 34566677776 57889999 32 33133444432 1222222 34566666665 33444455
Q ss_pred HHHHHhCCCc
Q 022007 73 AHKFHSLGVS 82 (304)
Q Consensus 73 ~~~l~~lG~~ 82 (304)
...|+++|++
T Consensus 81 a~~L~~~G~~ 90 (117)
T cd01522 81 AEAAAQAGFT 90 (117)
T ss_pred HHHHHHCCCC
Confidence 6777788875
No 298
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=62.57 E-value=26 Score=25.41 Aligned_cols=53 Identities=13% Similarity=0.198 Sum_probs=35.2
Q ss_pred ccCEEEEeE---EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 24 SVDAFLFDC---VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 24 ~~k~i~fDi---tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
..+.+++|+ +-+++.. +.--.+..++++++|.++.++.- ...+.+.|+..|++
T Consensus 42 ~~~~vvidls~v~~iDssg-l~~L~~~~~~~~~~~~~~~l~~~-----~~~~~~~l~~~~l~ 97 (108)
T TIGR00377 42 GPRPIVLDLEDLEFMDSSG-LGVLLGRYKQVRRVGGQLVLVSV-----SPRVARLLDITGLL 97 (108)
T ss_pred CCCeEEEECCCCeEEcccc-HHHHHHHHHHHHhcCCEEEEEeC-----CHHHHHHHHHhChh
Confidence 678899999 4444432 22225677778888988766553 45667777777775
No 299
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=62.38 E-value=4.5 Score=32.42 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=33.5
Q ss_pred EcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeech
Q 022007 35 WKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSS 91 (304)
Q Consensus 35 ~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~ 91 (304)
+....++||+.++|+. +.++|| -+...+...++++|+.-..+.++++
T Consensus 86 ~~~~~~~~g~~~~L~~-------~~i~Tn---~~~~~~~~~l~~~~l~~~fd~v~~~ 132 (175)
T TIGR01493 86 YKNLPPWPDSAAALAR-------VAILSN---ASHWAFDQFAQQAGLPWYFDRAFSV 132 (175)
T ss_pred HhcCCCCCchHHHHHH-------HhhhhC---CCHHHHHHHHHHCCCHHHHhhhccH
Confidence 3344689999999983 679999 4566677788889987544555443
No 300
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=60.77 E-value=45 Score=34.19 Aligned_cols=46 Identities=15% Similarity=0.236 Sum_probs=35.6
Q ss_pred EEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 34 IWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 34 L~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
+--.+.+-|+|..++..|+..|++++.+||. .........+++|++
T Consensus 718 ~~l~D~vr~~a~~av~~Lk~~Gi~v~mLTGD---n~~aA~svA~~VGi~ 763 (951)
T KOG0207|consen 718 FALEDQVRPDAALAVAELKSMGIKVVMLTGD---NDAAARSVAQQVGID 763 (951)
T ss_pred EEeccccchhHHHHHHHHHhcCceEEEEcCC---CHHHHHHHHHhhCcc
Confidence 3357789999999999999999999999993 333444445568876
No 301
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=60.72 E-value=31 Score=28.64 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=41.6
Q ss_pred hccCEEEEeE--EEEcCC--------ccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 23 DSVDAFLFDC--VIWKGD--------KLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 23 ~~~k~i~fDi--tL~~~~--------~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
...|++++|+ ||++.. -.-|+..++|+.+-+ .+.++|-|- .+..-....+..+|+.
T Consensus 19 ~~kklLVLDLDeTLvh~~~~~~~~~~~kRP~l~eFL~~~~~-~feIvVwTA---a~~~ya~~~l~~l~~~ 84 (195)
T TIGR02245 19 EGKKLLVLDIDYTLFDHRSPAETGEELMRPYLHEFLTSAYE-DYDIVIWSA---TSMKWIEIKMTELGVL 84 (195)
T ss_pred CCCcEEEEeCCCceEcccccCCCceEEeCCCHHHHHHHHHh-CCEEEEEec---CCHHHHHHHHHHhccc
Confidence 4668999999 999753 246889999999887 788999987 3344444566777764
No 302
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=60.43 E-value=20 Score=33.40 Aligned_cols=50 Identities=16% Similarity=0.093 Sum_probs=38.8
Q ss_pred EEEcCCc--cCccHHHHHHHHHHCCCcEEEE-eCCCCcCHHHHHHHHHhCCCc
Q 022007 33 VIWKGDK--LIDGVRQTLDVLRSKGKKLIFV-TNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 33 tL~~~~~--~~~~a~eal~~L~~~G~~~~i~-Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
|+--+.. ..|...+.++.+++.|+++.+. ||+++....+..+++.+.|++
T Consensus 78 tisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld 130 (404)
T TIGR03278 78 TISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVR 130 (404)
T ss_pred EEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCC
Confidence 5554443 4667899999999999999986 997767666777888777776
No 303
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=60.33 E-value=14 Score=29.17 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=22.2
Q ss_pred EcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcC
Q 022007 35 WKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRS 68 (304)
Q Consensus 35 ~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~ 68 (304)
.....--+...++++.++++|.+++.+|++..-+
T Consensus 86 iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~ 119 (154)
T TIGR00441 86 ISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGK 119 (154)
T ss_pred EcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 3333445556788888888888888888744333
No 304
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=58.50 E-value=39 Score=32.16 Aligned_cols=49 Identities=22% Similarity=0.502 Sum_probs=35.4
Q ss_pred ccCEEEEeE--EEEcCC---------cc---CccH-----HHHHHHHHHCCCcEEEEeCCCCcCHHHH
Q 022007 24 SVDAFLFDC--VIWKGD---------KL---IDGV-----RQTLDVLRSKGKKLIFVTNNSRRSRRQY 72 (304)
Q Consensus 24 ~~k~i~fDi--tL~~~~---------~~---~~~a-----~eal~~L~~~G~~~~i~Tn~s~r~~~~~ 72 (304)
..|++++|+ |||.|- ++ .+|. .+.|..|+++|+.++++|-|+-+...++
T Consensus 221 ~kK~LVLDLDNTLWGGVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~da~ev 288 (574)
T COG3882 221 SKKALVLDLDNTLWGGVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNTEKDAKEV 288 (574)
T ss_pred ccceEEEecCCcccccccccccccceeecCCCCchhHHHHHHHHHHHHhccEEEEEecCCchhhHHHH
Confidence 578999999 999642 11 2332 4788999999999999998765544433
No 305
>PRK13937 phosphoheptose isomerase; Provisional
Probab=56.99 E-value=18 Score=29.64 Aligned_cols=33 Identities=21% Similarity=0.113 Sum_probs=22.4
Q ss_pred cCCccCccHHHHHHHHHHCCCcEEEEeCCCCcC
Q 022007 36 KGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRS 68 (304)
Q Consensus 36 ~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~ 68 (304)
....--+...++++.++++|.+++.+|++..-+
T Consensus 114 S~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~ 146 (188)
T PRK13937 114 STSGNSPNVLAALEKARELGMKTIGLTGRDGGK 146 (188)
T ss_pred eCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 334445567788888888888888888744333
No 306
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=56.59 E-value=16 Score=24.95 Aligned_cols=39 Identities=18% Similarity=0.371 Sum_probs=35.0
Q ss_pred CCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcC
Q 022007 224 GKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAG 263 (304)
Q Consensus 224 gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG 263 (304)
.-|....++.+++.+++++..+..|-++ ...|..++.+|
T Consensus 25 ~aPftAvlkfaAEeFkv~~~TsAiiTnd-GvGINP~qtAG 63 (82)
T cd01766 25 STPFTAVLKFAAEEFKVPAATSAIITND-GIGINPAQTAG 63 (82)
T ss_pred cCchHHHHHHHHHhcCCCccceeEEecC-ccccChhhccc
Confidence 4467888999999999999999999888 88999999999
No 307
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=56.07 E-value=87 Score=32.61 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=24.6
Q ss_pred cCCccCccHHHHHHHHHHCCCcEEEEeCC
Q 022007 36 KGDKLIDGVRQTLDVLRSKGKKLIFVTNN 64 (304)
Q Consensus 36 ~~~~~~~~a~eal~~L~~~G~~~~i~Tn~ 64 (304)
-.++.=+.++..|++|++.+++.+.+||.
T Consensus 702 meNkLK~~T~~VI~eL~~AnIRtVMcTGD 730 (1140)
T KOG0208|consen 702 MENKLKEETKRVIDELNRANIRTVMCTGD 730 (1140)
T ss_pred eecccccccHHHHHHHHhhcceEEEEcCC
Confidence 45566777899999999999999999993
No 308
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=55.90 E-value=21 Score=28.90 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=26.9
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHH
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYA 73 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~ 73 (304)
.+--+...++++.++++|.+++.+|++..-+...+.
T Consensus 85 sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~a 120 (179)
T cd05005 85 SGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLA 120 (179)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhC
Confidence 344556789999999999999999996555555433
No 309
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=54.95 E-value=25 Score=32.34 Aligned_cols=90 Identities=21% Similarity=0.309 Sum_probs=59.8
Q ss_pred ccchhhHHHhhhccCEEEEeE--EEEcCCc-------------cCccHHHHHHHHHHCCCcEEEEeCCCCcCHHH-----
Q 022007 12 LLSANNITALFDSVDAFLFDC--VIWKGDK-------------LIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQ----- 71 (304)
Q Consensus 12 ~~~~~~~~~~~~~~k~i~fDi--tL~~~~~-------------~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~----- 71 (304)
++...+...+=...|.+-||+ ||.+... +.+....=++.|.+.|+.++|.||+.+..+..
T Consensus 62 ~L~i~~~~~v~~~~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~ 141 (422)
T KOG2134|consen 62 MLQIFTLPKVNGGSKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEE 141 (422)
T ss_pred ceEEeeccccCCCcceEEEecCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEecccccccCcchHHH
Confidence 356666666666889999999 8875321 35556677888899999999999987765442
Q ss_pred HHH----HHHhCCCccC------CCCeechHHHHHHHHHh
Q 022007 72 YAH----KFHSLGVSVS------EDEIFSSSFAAAMYLKV 101 (304)
Q Consensus 72 ~~~----~l~~lG~~~~------~~~i~~~~~~~~~~l~~ 101 (304)
..+ ....+|+++. ...+--+...+++++.+
T Consensus 142 f~~Ki~~i~anl~vPi~~~~A~~~~~yRKP~tGMwe~~~~ 181 (422)
T KOG2134|consen 142 FKKKIKAIVANLGVPIQLLAAIIKGKYRKPSTGMWEFLKR 181 (422)
T ss_pred HHHHHHHHHHhcCCceEEeeeccCCcccCcchhHHHHHHH
Confidence 222 3445777732 23444556667777763
No 310
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=54.82 E-value=29 Score=30.83 Aligned_cols=45 Identities=22% Similarity=0.343 Sum_probs=32.2
Q ss_pred EEeE-EEE-cCC-ccCccHHHHHHHHHHCC-CcEEEEeCCCCcCHHHHHHHH
Q 022007 29 LFDC-VIW-KGD-KLIDGVRQTLDVLRSKG-KKLIFVTNNSRRSRRQYAHKF 76 (304)
Q Consensus 29 ~fDi-tL~-~~~-~~~~~a~eal~~L~~~G-~~~~i~Tn~s~r~~~~~~~~l 76 (304)
=.|. |+- .|. +++|.-.+.|+.+++.| ++++++||+|- .++.+.|
T Consensus 79 ~pd~vtis~~GEPTLy~~L~elI~~~k~~g~~~tflvTNgsl---pdv~~~L 127 (296)
T COG0731 79 EPDHVTISLSGEPTLYPNLGELIEEIKKRGKKTTFLVTNGSL---PDVLEEL 127 (296)
T ss_pred CCCEEEEeCCCCcccccCHHHHHHHHHhcCCceEEEEeCCCh---HHHHHHh
Confidence 3455 665 344 47888899999999999 79999999553 4444444
No 311
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=54.71 E-value=36 Score=25.48 Aligned_cols=50 Identities=10% Similarity=0.114 Sum_probs=34.6
Q ss_pred EEEEcCCccCccHHHHHHHHHHCCCcEEEEe-CCCCcCHHHHHHHHHhCCCc
Q 022007 32 CVIWKGDKLIDGVRQTLDVLRSKGKKLIFVT-NNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 32 itL~~~~~~~~~a~eal~~L~~~G~~~~i~T-n~s~r~~~~~~~~l~~lG~~ 82 (304)
+|||...... ..++|++.|.++|+.+-+.- -..+.+.+++...++.+|++
T Consensus 2 i~iy~~p~C~-~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~~~g~~ 52 (113)
T cd03033 2 IIFYEKPGCA-NNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFGDLPVA 52 (113)
T ss_pred EEEEECCCCH-HHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHHHcCHH
Confidence 3555433332 36799999999999875543 23457889999999988863
No 312
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=54.37 E-value=32 Score=32.97 Aligned_cols=46 Identities=24% Similarity=0.364 Sum_probs=34.9
Q ss_pred EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCC
Q 022007 33 VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGV 81 (304)
Q Consensus 33 tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~ 81 (304)
.+.-.+.+-|++.++++.|++.|+.++++|+. ........-+++|+
T Consensus 341 ~i~l~d~lr~~~~~~i~~l~~~gi~~~~ltGD---~~~~a~~ia~~lgi 386 (499)
T TIGR01494 341 LLGLEDPLRDDAKETISELREAGIRVIMLTGD---NVLTAKAIAKELGI 386 (499)
T ss_pred EEEecCCCchhHHHHHHHHHHCCCeEEEEcCC---CHHHHHHHHHHcCc
Confidence 55667889999999999999999999999993 44443333444564
No 313
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=53.95 E-value=35 Score=24.52 Aligned_cols=54 Identities=6% Similarity=0.098 Sum_probs=35.1
Q ss_pred ccCEEEEeE--EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 24 SVDAFLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 24 ~~k~i~fDi--tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
..+.+++|+ +-+-+..-+.--.+..++++++|..+.++ | ...++.+.|+..|++
T Consensus 38 ~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l~l~-~----~~~~v~~~l~~~gl~ 93 (100)
T cd06844 38 AGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFVLT-G----ISPAVRITLTESGLD 93 (100)
T ss_pred CCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEEE-C----CCHHHHHHHHHhCch
Confidence 478999999 43322222222257778888899888554 4 346677777777775
No 314
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=53.81 E-value=89 Score=29.93 Aligned_cols=87 Identities=17% Similarity=0.073 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHHcCCCceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCC
Q 022007 164 HINYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASS 243 (304)
Q Consensus 164 ~~~~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~ 243 (304)
+...++..+.+..|++. |...+....|... -+..+....|. .+.=.|+--....+.+.-...
T Consensus 346 d~lr~~~~~~i~~l~~~-gi~~~~ltGD~~~-------------~a~~ia~~lgi----~~~~~p~~K~~~v~~l~~~g~ 407 (499)
T TIGR01494 346 DPLRDDAKETISELREA-GIRVIMLTGDNVL-------------TAKAIAKELGI----FARVTPEEKAALVEALQKKGR 407 (499)
T ss_pred CCCchhHHHHHHHHHHC-CCeEEEEcCCCHH-------------HHHHHHHHcCc----eeccCHHHHHHHHHHHHHCCC
Confidence 45567888888899886 7664443333311 11112222221 111123332233333322336
Q ss_pred cEEEEcCCchhhHHHHHHcCCeEEEEccC
Q 022007 244 RMCMVGDRLDTDILFGQNAGCKTLLVLSG 272 (304)
Q Consensus 244 ~~~~IGD~~~~Di~~a~~aG~~ti~V~~G 272 (304)
.+.|+||. .||..+.++++ ++|.+|
T Consensus 408 ~v~~vGDg-~nD~~al~~Ad---vgia~~ 432 (499)
T TIGR01494 408 VVAMTGDG-VNDAPALKKAD---VGIAMG 432 (499)
T ss_pred EEEEECCC-hhhHHHHHhCC---Cccccc
Confidence 79999999 89999999999 778777
No 315
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=53.58 E-value=24 Score=25.24 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=35.9
Q ss_pred hhhHHHhhhc-cCEEEEeE-EEEc-CCccCccHH----------------HHHHHHHHCCCcEEEEeCCCCcCHHHHHHH
Q 022007 15 ANNITALFDS-VDAFLFDC-VIWK-GDKLIDGVR----------------QTLDVLRSKGKKLIFVTNNSRRSRRQYAHK 75 (304)
Q Consensus 15 ~~~~~~~~~~-~k~i~fDi-tL~~-~~~~~~~a~----------------eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~ 75 (304)
.+++.+++.+ -+.+++|+ +=.. ....+|||. +.+..+ ..+.++++......| .......
T Consensus 3 ~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~~~~~~~~~-~~~~~ivv~C~~G~r-s~~aa~~ 80 (100)
T cd01523 3 PEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDFLEIEEDILDQL-PDDQEVTVICAKEGS-SQFVAEL 80 (100)
T ss_pred HHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHHHHHhhHHHHhhC-CCCCeEEEEcCCCCc-HHHHHHH
Confidence 3456666665 46789999 3221 112233332 122222 245667666663444 4556678
Q ss_pred HHhCCCc
Q 022007 76 FHSLGVS 82 (304)
Q Consensus 76 l~~lG~~ 82 (304)
|+++|++
T Consensus 81 L~~~G~~ 87 (100)
T cd01523 81 LAERGYD 87 (100)
T ss_pred HHHcCce
Confidence 8888886
No 316
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=53.49 E-value=26 Score=26.18 Aligned_cols=27 Identities=11% Similarity=0.292 Sum_probs=20.9
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCC
Q 022007 39 KLIDGVRQTLDVLRSKGKKLIFVTNNS 65 (304)
Q Consensus 39 ~~~~~a~eal~~L~~~G~~~~i~Tn~s 65 (304)
.--+...++++.++++|.+++.+|+++
T Consensus 54 G~t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 54 GNTEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 344557788888999999999999743
No 317
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=53.27 E-value=58 Score=31.39 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=48.6
Q ss_pred CCCCccccchhhHHHhhhccCEEEEeE-----EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCC
Q 022007 6 GQAPAELLSANNITALFDSVDAFLFDC-----VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLG 80 (304)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~k~i~fDi-----tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG 80 (304)
|..|..+....+--+-......++..- |++.-+.+-||-+|-+.+||+.|++.+.+|+.-..+.. ...++-|
T Consensus 409 g~~p~~l~~~~~~vs~~GGTPL~V~~~~~~~GVI~LkDivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa---~IA~EAG 485 (681)
T COG2216 409 GHIPEDLDAAVDEVSRLGGTPLVVVENGRILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAA---AIAAEAG 485 (681)
T ss_pred CCCCHHHHHHHHHHHhcCCCceEEEECCEEEEEEEehhhcchhHHHHHHHHHhcCCeEEEEeCCCHHHHH---HHHHHhC
Confidence 334444444443333333455555543 77777778899999999999999999999994433433 3344567
Q ss_pred Cc
Q 022007 81 VS 82 (304)
Q Consensus 81 ~~ 82 (304)
.|
T Consensus 486 VD 487 (681)
T COG2216 486 VD 487 (681)
T ss_pred ch
Confidence 76
No 318
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=52.93 E-value=32 Score=28.41 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=24.1
Q ss_pred EcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCH
Q 022007 35 WKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSR 69 (304)
Q Consensus 35 ~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~ 69 (304)
.....--+...++++.++++|.+++.+|++..-+.
T Consensus 118 iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l 152 (192)
T PRK00414 118 ISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKM 152 (192)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChh
Confidence 33444556677888888888888888888544333
No 319
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=52.74 E-value=1.1e+02 Score=28.28 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=39.0
Q ss_pred cccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEcc
Q 022007 221 IVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLS 271 (304)
Q Consensus 221 ~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~ 271 (304)
...|| ...|+.+.+++|- +-.-++|||. ...-.+|++..|..+-+..
T Consensus 406 ~kiGK--escFerI~~RFg~-K~~yvvIgdG-~eee~aAK~ln~PfwrI~~ 452 (468)
T KOG3107|consen 406 TKIGK--ESCFERIQSRFGR-KVVYVVIGDG-VEEEQAAKALNMPFWRISS 452 (468)
T ss_pred hhccH--HHHHHHHHHHhCC-ceEEEEecCc-HHHHHHHHhhCCceEeecc
Confidence 34566 8899999999997 5678999999 6778899999998887643
No 320
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=52.18 E-value=33 Score=21.25 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=19.1
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhC
Q 022007 39 KLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSL 79 (304)
Q Consensus 39 ~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~l 79 (304)
..++.+..++++|++.|..+ ++..+.+.|+..
T Consensus 16 GlI~~~~~~l~~l~~~g~~i---------s~~l~~~~L~~~ 47 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRI---------SPKLIEEILRRA 47 (48)
T ss_pred CChhhHHHHHHHHHHcCccc---------CHHHHHHHHHHc
Confidence 45566777777777777553 455555555443
No 321
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=51.45 E-value=22 Score=32.60 Aligned_cols=42 Identities=29% Similarity=0.295 Sum_probs=30.1
Q ss_pred HHHHHHHHHHc----CCCCCcEEEEcCCch----hhHHHHHHcCCeEEEEcc
Q 022007 228 TFMMEILSKKF----QIASSRMCMVGDRLD----TDILFGQNAGCKTLLVLS 271 (304)
Q Consensus 228 ~~~~~~al~~l----g~~~~~~~~IGD~~~----~Di~~a~~aG~~ti~V~~ 271 (304)
..+.+.+.+.+ ++++++++.|||.+. ||. .|+.+| .|+||+.
T Consensus 351 s~GV~~lQ~y~~~~~~i~~~~tLHVGDQF~s~GaNDf-kaR~a~-~t~WIas 400 (408)
T PF06437_consen 351 SLGVRALQKYFDPEGGIKPSETLHVGDQFLSAGANDF-KARLAC-TTAWIAS 400 (408)
T ss_pred HHhHHHHHHHHHhccCCCccceeeehhhhhccCCcch-hhhhhc-eeeEecC
Confidence 66777777777 899999999999742 555 344444 5677755
No 322
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=49.98 E-value=52 Score=23.02 Aligned_cols=53 Identities=13% Similarity=0.205 Sum_probs=33.3
Q ss_pred cCEEEEeE--EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 25 VDAFLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 25 ~k~i~fDi--tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
.+.+++|+ +=+-+...+.--.++.+.++++|+.+.+ +| ...++.+.++.+|+.
T Consensus 38 ~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~i-~~----~~~~~~~~l~~~gl~ 92 (99)
T cd07043 38 PRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLVL-VN----VSPAVRRVLELTGLD 92 (99)
T ss_pred CCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEEE-Ec----CCHHHHHHHHHhCcc
Confidence 58889999 3332222222235777888889988654 44 235777788877764
No 323
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=49.17 E-value=20 Score=30.25 Aligned_cols=51 Identities=14% Similarity=0.309 Sum_probs=31.2
Q ss_pred hHHHhhhccCEEEEeE---EEEcCCcc-CccHHHHHHHHHHCCCcEEEEeCCCCc
Q 022007 17 NITALFDSVDAFLFDC---VIWKGDKL-IDGVRQTLDVLRSKGKKLIFVTNNSRR 67 (304)
Q Consensus 17 ~~~~~~~~~k~i~fDi---tL~~~~~~-~~~a~eal~~L~~~G~~~~i~Tn~s~r 67 (304)
+..++++.++..-... ||--|+.. .+...+.+..|+++|+++.+=||.+--
T Consensus 57 ~~~~I~~~i~~~~~~~~~V~lTGGEP~~~~~l~~Ll~~l~~~g~~~~lETngti~ 111 (212)
T COG0602 57 SADEILADIKSLGYKARGVSLTGGEPLLQPNLLELLELLKRLGFRIALETNGTIP 111 (212)
T ss_pred CHHHHHHHHHhcCCCcceEEEeCCcCCCcccHHHHHHHHHhCCceEEecCCCCcc
Confidence 4444444444432222 44444443 347888888899889999888885533
No 324
>PRK13938 phosphoheptose isomerase; Provisional
Probab=48.94 E-value=39 Score=28.07 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=23.5
Q ss_pred cCCccCccHHHHHHHHHHCCCcEEEEeCCCCcC
Q 022007 36 KGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRS 68 (304)
Q Consensus 36 ~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~ 68 (304)
....--+...++++.++++|.+++.+|++..-+
T Consensus 121 S~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~ 153 (196)
T PRK13938 121 STSGNSMSVLRAAKTARELGVTVVAMTGESGGQ 153 (196)
T ss_pred cCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 333445557788888888898888888855433
No 325
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=48.80 E-value=48 Score=22.95 Aligned_cols=48 Identities=13% Similarity=0.080 Sum_probs=31.2
Q ss_pred EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 33 VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 33 tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
++..+....+.|.+..+.|++.|+.+.+-.. .++.....+.....|++
T Consensus 6 ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~--~~~~~~~~~~a~~~g~~ 53 (91)
T cd00860 6 VIPVTDEHLDYAKEVAKKLSDAGIRVEVDLR--NEKLGKKIREAQLQKIP 53 (91)
T ss_pred EEeeCchHHHHHHHHHHHHHHCCCEEEEECC--CCCHHHHHHHHHHcCCC
Confidence 4444445566688888999999998866433 25665555555566665
No 326
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=48.12 E-value=3.3 Score=36.63 Aligned_cols=60 Identities=7% Similarity=-0.082 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHH
Q 022007 167 YYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMM 231 (304)
Q Consensus 167 ~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~ 231 (304)
-+++.+++..|+++ |.+ +++||+.+.... ..+...++..+|+.+++.......||+|+..
T Consensus 148 dPgV~EaL~~Lkek-GikLaIaTS~~Re~v~----~~L~~lGLd~YFdvIIs~Gdv~~~kp~~e~~ 208 (301)
T TIGR01684 148 DPRIYDSLTELKKR-GCILVLWSYGDRDHVV----ESMRKVKLDRYFDIIISGGHKAEEYSTMSTE 208 (301)
T ss_pred CHHHHHHHHHHHHC-CCEEEEEECCCHHHHH----HHHHHcCCCcccCEEEECCccccCCCCcccc
Confidence 47888999999988 665 788987773221 1222233556677777777778888877654
No 327
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=47.86 E-value=57 Score=23.69 Aligned_cols=84 Identities=12% Similarity=-0.018 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHHHHhhCCC--CcccCCCcHHHHHHHHHHcCCC
Q 022007 165 INYYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKE--PIVVGKPSTFMMEILSKKFQIA 241 (304)
Q Consensus 165 ~~~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~--~~~~gKP~~~~~~~al~~lg~~ 241 (304)
-.+++..++++.|+++ |.+ +++||.....+ ..+.+.+.. .|.. ....--|....-+++.++ ..
T Consensus 14 ~~ipga~e~l~~L~~~-g~~~~~lTNns~~s~----------~~~~~~L~~-~Gi~~~~~~i~ts~~~~~~~l~~~--~~ 79 (101)
T PF13344_consen 14 EPIPGAVEALDALRER-GKPVVFLTNNSSRSR----------EEYAKKLKK-LGIPVDEDEIITSGMAAAEYLKEH--KG 79 (101)
T ss_dssp EE-TTHHHHHHHHHHT-TSEEEEEES-SSS-H----------HHHHHHHHH-TTTT--GGGEEEHHHHHHHHHHHH--TT
T ss_pred CcCcCHHHHHHHHHHc-CCCEEEEeCCCCCCH----------HHHHHHHHh-cCcCCCcCEEEChHHHHHHHHHhc--CC
Confidence 3588999999999998 665 66799765221 123333422 3322 112222223333333333 23
Q ss_pred CCcEEEEcCCchhhHHHHHHcCC
Q 022007 242 SSRMCMVGDRLDTDILFGQNAGC 264 (304)
Q Consensus 242 ~~~~~~IGD~~~~Di~~a~~aG~ 264 (304)
..+++++|-. ...+..+.+|+
T Consensus 80 ~~~v~vlG~~--~l~~~l~~~G~ 100 (101)
T PF13344_consen 80 GKKVYVLGSD--GLREELREAGF 100 (101)
T ss_dssp SSEEEEES-H--HHHHHHHHTTE
T ss_pred CCEEEEEcCH--HHHHHHHHcCC
Confidence 5678888876 56677777774
No 328
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=47.52 E-value=1.9e+02 Score=25.16 Aligned_cols=87 Identities=9% Similarity=-0.041 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcH--HHHHHHHHHcCCCC
Q 022007 166 NYYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPST--FMMEILSKKFQIAS 242 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~--~~~~~al~~lg~~~ 242 (304)
.+++..++++.|+++ |.+ +++||...... ..+...+.. .|.... ..++-. ......++......
T Consensus 19 ~~~ga~e~l~~L~~~-g~~~~~~Tnns~~~~----------~~~~~~l~~-~G~~~~-~~~i~ts~~~~~~~l~~~~~~~ 85 (279)
T TIGR01452 19 VVPGAPELLDRLARA-GKAALFVTNNSTKSR----------AEYALKFAR-LGFNGL-AEQLFSSALCAARLLRQPPDAP 85 (279)
T ss_pred eCcCHHHHHHHHHHC-CCeEEEEeCCCCCCH----------HHHHHHHHH-cCCCCC-hhhEecHHHHHHHHHHhhCcCC
Confidence 567788999999987 665 56788543111 112222221 333221 122222 33344555544445
Q ss_pred CcEEEEcCCchhhHHHHHHcCCeEE
Q 022007 243 SRMCMVGDRLDTDILFGQNAGCKTL 267 (304)
Q Consensus 243 ~~~~~IGD~~~~Di~~a~~aG~~ti 267 (304)
.+++++|+. ......+..|+..+
T Consensus 86 ~~v~~iG~~--~~~~~l~~~g~~~~ 108 (279)
T TIGR01452 86 KAVYVIGEE--GLRAELDAAGIRLA 108 (279)
T ss_pred CEEEEEcCH--HHHHHHHHCCCEEe
Confidence 789999987 34566778897644
No 329
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=47.27 E-value=25 Score=30.12 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=34.6
Q ss_pred cchhhHHHhhhccCEEEEeE-EEEcCCccC-ccHHHHHHHHHHCCCcEEEEeCCCC
Q 022007 13 LSANNITALFDSVDAFLFDC-VIWKGDKLI-DGVRQTLDVLRSKGKKLIFVTNNSR 66 (304)
Q Consensus 13 ~~~~~~~~~~~~~k~i~fDi-tL~~~~~~~-~~a~eal~~L~~~G~~~~i~Tn~s~ 66 (304)
.+.+.+.+.+.++...-... ||--|+..+ +.-.+.++.|++.|+++.+.||++.
T Consensus 56 ~s~~ei~~~i~~~~~~~~~~V~lTGGEPll~~~l~~li~~l~~~g~~v~leTNGtl 111 (238)
T TIGR03365 56 MTAEEVWQELKALGGGTPLHVSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSV 111 (238)
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEeCCchhhhHhHHHHHHHHHHCCCCEEEECCCCC
Confidence 45555555555443211222 444444433 5678999999999999999999664
No 330
>TIGR00035 asp_race aspartate racemase.
Probab=46.37 E-value=1.8e+02 Score=24.54 Aligned_cols=80 Identities=18% Similarity=0.269 Sum_probs=52.9
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHh-CCCccCCCCeechHHHHHHHHHhCCCCCCCeEEEEcChh-
Q 022007 40 LIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHS-LGVSVSEDEIFSSSFAAAMYLKVNNFPQENKVYVIGGEG- 117 (304)
Q Consensus 40 ~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~-lG~~~~~~~i~~~~~~~~~~l~~~~~~~~~~v~~~g~~~- 117 (304)
+.+...+++++|.+.|..++++.-|| ...+.+.+++ .+++ ++.-...+...++..+. +++.++|+..
T Consensus 60 ~~~~l~~~~~~L~~~g~d~iviaCNT---ah~~~~~l~~~~~iP-----ii~i~~~~~~~~~~~~~---~~VgvLaT~~T 128 (229)
T TIGR00035 60 PRPILIDIAVKLENAGADFIIMPCNT---AHKFAEDIQKAIGIP-----LISMIEETAEAVKEDGV---KKAGLLGTKGT 128 (229)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcc---HHHHHHHHHHhCCCC-----EechHHHHHHHHHHcCC---CEEEEEecHHH
Confidence 55667899999999999887777655 3333455654 4443 34445555566665443 5799998864
Q ss_pred -----HHHHHHHcCCccc
Q 022007 118 -----ILEELRQAGYTGL 130 (304)
Q Consensus 118 -----~~~~l~~~g~~~~ 130 (304)
+.+.+.+.|+...
T Consensus 129 ~~s~~y~~~l~~~g~~v~ 146 (229)
T TIGR00035 129 MKDGVYEREMKKHGIEIV 146 (229)
T ss_pred HHhHHHHHHHHHCCCEEE
Confidence 4567777887665
No 331
>PRK05568 flavodoxin; Provisional
Probab=45.87 E-value=67 Score=24.58 Aligned_cols=61 Identities=16% Similarity=0.318 Sum_probs=37.9
Q ss_pred hhccCEEEEeE-EEEcCCccC-ccHHHHHHHHHH--CCCcEEEEeCCC---CcCHHHHHHHHHhCCCcc
Q 022007 22 FDSVDAFLFDC-VIWKGDKLI-DGVRQTLDVLRS--KGKKLIFVTNNS---RRSRRQYAHKFHSLGVSV 83 (304)
Q Consensus 22 ~~~~k~i~fDi-tL~~~~~~~-~~a~eal~~L~~--~G~~~~i~Tn~s---~r~~~~~~~~l~~lG~~~ 83 (304)
+..+++++|=. | |.+..+. +....+++.++. +|+++++.+... +.....+.+.|+++|+.+
T Consensus 46 ~~~~d~iilgsp~-y~~~~~~~~~~~~f~~~~~~~~~~k~~~~f~t~G~~~~~~~~~~~~~l~~~g~~~ 113 (142)
T PRK05568 46 VKGADVVALGSPA-MGDEVLEEGEMEPFVESISSLVKGKKLVLFGSYGWGDGEWMRDWVERMEGYGANL 113 (142)
T ss_pred HHhCCEEEEECCc-cCcccccchhHHHHHHHhhhhhCCCEEEEEEccCCCCChHHHHHHHHHHHCCCEE
Confidence 45777777766 5 4333332 236778877754 677776666522 234566777888888874
No 332
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=45.62 E-value=18 Score=29.20 Aligned_cols=44 Identities=23% Similarity=0.482 Sum_probs=24.3
Q ss_pred hhccCEEEEeE-EEEcCCccCc--------cH----HH-HHHHHHHCCCcEEEEeCCC
Q 022007 22 FDSVDAFLFDC-VIWKGDKLID--------GV----RQ-TLDVLRSKGKKLIFVTNNS 65 (304)
Q Consensus 22 ~~~~k~i~fDi-tL~~~~~~~~--------~a----~e-al~~L~~~G~~~~i~Tn~s 65 (304)
.++.+.|++|+ |+|-.+-... .+ .+ .+..+...--+++++||..
T Consensus 73 ~~~~~~VLvDcLt~wvtNll~~~e~~~~~~~~~~~~~~~L~~al~~~~~~~ilVsNEv 130 (175)
T COG2087 73 IEPGDVVLVDCLTLWVTNLLFAGEKDWSAEAAIEAEIEALLAALSRAPGTVVLVSNEV 130 (175)
T ss_pred ccCCCEEEEEcHHHHHHHHHhccccccchhhhHHHHHHHHHHHHhcCCccEEEEecCc
Confidence 34568999999 8774332221 11 12 2222322223799999954
No 333
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=45.58 E-value=15 Score=24.37 Aligned_cols=25 Identities=44% Similarity=0.519 Sum_probs=15.1
Q ss_pred HHHHHHHcCCCCCcEEEEcCCchhhHHHHH
Q 022007 231 MEILSKKFQIASSRMCMVGDRLDTDILFGQ 260 (304)
Q Consensus 231 ~~~al~~lg~~~~~~~~IGD~~~~Di~~a~ 260 (304)
.+.+++++|+ .+++||. .+|+++..
T Consensus 7 VqQLLK~fG~----~IY~gdr-~~DielM~ 31 (62)
T PF06014_consen 7 VQQLLKKFGI----IIYVGDR-LWDIELME 31 (62)
T ss_dssp HHHHHHTTS---------S-H-HHHHHHHH
T ss_pred HHHHHHHCCE----EEEeCCh-HHHHHHHH
Confidence 4567788875 8999999 89999865
No 334
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=45.53 E-value=65 Score=30.94 Aligned_cols=55 Identities=9% Similarity=0.257 Sum_probs=43.7
Q ss_pred EEEeE-EEE--cCCccCccHHHHHHHHHHCCCcEEEEeCCCCcC---HHHHHHHHHhCCCc
Q 022007 28 FLFDC-VIW--KGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRS---RRQYAHKFHSLGVS 82 (304)
Q Consensus 28 i~fDi-tL~--~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~---~~~~~~~l~~lG~~ 82 (304)
=+.|| +|. -.+..-|-+.|||+.+|+.|.|++++-|--.++ +......|.+.|+.
T Consensus 77 ~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~ 137 (509)
T COG0532 77 SVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLV 137 (509)
T ss_pred ccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCC
Confidence 46788 444 355688889999999999999999999966554 56667778888987
No 335
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=45.43 E-value=62 Score=24.17 Aligned_cols=68 Identities=13% Similarity=0.203 Sum_probs=36.7
Q ss_pred ccchhhHHHhhhc-cCEEEEeE-E--EEcCCccCccHH--------HHHHHHH---------HCCCcEEEEeCCCCcCHH
Q 022007 12 LLSANNITALFDS-VDAFLFDC-V--IWKGDKLIDGVR--------QTLDVLR---------SKGKKLIFVTNNSRRSRR 70 (304)
Q Consensus 12 ~~~~~~~~~~~~~-~k~i~fDi-t--L~~~~~~~~~a~--------eal~~L~---------~~G~~~~i~Tn~s~r~~~ 70 (304)
..+..++.+++.+ -+.+++|+ . =+.. ..+|||. +....+. ..+.++++..+...| ..
T Consensus 9 ~is~~el~~~~~~~~~~~ivDvR~~~e~~~-~hIpgai~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~C~~G~r-s~ 86 (122)
T cd01526 9 RVSVKDYKNILQAGKKHVLLDVRPKVHFEI-CRLPEAINIPLSELLSKAAELKSLQELPLDNDKDSPIYVVCRRGND-SQ 86 (122)
T ss_pred ccCHHHHHHHHhCCCCeEEEEcCCHHHhhc-ccCCCCeEccHHHHhhhhhhhhhhhhcccccCCCCcEEEECCCCCc-HH
Confidence 3566677777766 57789999 2 2222 2233331 1111121 235666666653333 44
Q ss_pred HHHHHHHhCCC
Q 022007 71 QYAHKFHSLGV 81 (304)
Q Consensus 71 ~~~~~l~~lG~ 81 (304)
.....|+++|+
T Consensus 87 ~aa~~L~~~G~ 97 (122)
T cd01526 87 TAVRKLKELGL 97 (122)
T ss_pred HHHHHHHHcCC
Confidence 55667888888
No 336
>PLN02735 carbamoyl-phosphate synthase
Probab=45.30 E-value=4.2e+02 Score=28.48 Aligned_cols=64 Identities=6% Similarity=0.052 Sum_probs=36.6
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhh
Q 022007 228 TFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELL 302 (304)
Q Consensus 228 ~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l 302 (304)
...++.+++.+|++--....+.+. ..=...++..|.+.+ |..-++. ....-.++.+-+||.+.+
T Consensus 703 K~~~k~~l~~~GIp~p~~~~v~s~-eea~~~a~~iGyPvv-VKP~~g~---------gG~G~~iV~~~eeL~~al 766 (1102)
T PLN02735 703 RERFNAILNELKIEQPKGGIARSE-ADALAIAKRIGYPVV-VRPSYVL---------GGRAMEIVYSDDKLKTYL 766 (1102)
T ss_pred HHHHHHHHHHcCCCCCCeeEeCCH-HHHHHHHHhcCCCeE-EEeCCCC---------CCCcEEEECCHHHHHHHH
Confidence 445777888889876666666543 332345667787644 4221111 013455777777776544
No 337
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=45.16 E-value=30 Score=24.64 Aligned_cols=68 Identities=19% Similarity=0.309 Sum_probs=36.2
Q ss_pred chhhHHHhhhccCEEEEeE-E--EEcCCccCccHHHH----HHHH-----------HHCCCcEEEEeCCCCcCHHHHHHH
Q 022007 14 SANNITALFDSVDAFLFDC-V--IWKGDKLIDGVRQT----LDVL-----------RSKGKKLIFVTNNSRRSRRQYAHK 75 (304)
Q Consensus 14 ~~~~~~~~~~~~k~i~fDi-t--L~~~~~~~~~a~ea----l~~L-----------~~~G~~~~i~Tn~s~r~~~~~~~~ 75 (304)
+.+.+.+.+.+-..+++|+ . -+.....+|||... +... .....++++..++..+ .......
T Consensus 2 s~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~-s~~~~~~ 80 (103)
T cd01447 2 SPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWADPDSPYHKPAFAEDKPFVFYCASGWR-SALAGKT 80 (103)
T ss_pred CHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhcCccccccccCCCCCCeEEEEcCCCCc-HHHHHHH
Confidence 3456666776667889999 2 22222345665321 2211 1234455555543333 3455567
Q ss_pred HHhCCCc
Q 022007 76 FHSLGVS 82 (304)
Q Consensus 76 l~~lG~~ 82 (304)
|+.+|++
T Consensus 81 l~~~G~~ 87 (103)
T cd01447 81 LQDMGLK 87 (103)
T ss_pred HHHcChH
Confidence 7778875
No 338
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=44.99 E-value=51 Score=24.52 Aligned_cols=55 Identities=16% Similarity=0.226 Sum_probs=35.9
Q ss_pred ccCEEEEeE--EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCcc
Q 022007 24 SVDAFLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSV 83 (304)
Q Consensus 24 ~~k~i~fDi--tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~ 83 (304)
+.+.+++|+ |=+-+...+--=..+++.++..|..++++.. ...+.+.+...|++.
T Consensus 43 ~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~i-----~p~v~~~~~~~gl~~ 99 (117)
T COG1366 43 GARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLVGI-----QPEVARTLELTGLDK 99 (117)
T ss_pred CCcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEEeC-----CHHHHHHHHHhCchh
Confidence 345599999 4443322222124677888889988876665 456777888888873
No 339
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=44.18 E-value=56 Score=28.01 Aligned_cols=54 Identities=11% Similarity=0.302 Sum_probs=37.1
Q ss_pred CEEEEeE-EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 26 DAFLFDC-VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 26 k~i~fDi-tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
+.+=.|. +....+...||-..|=+.|++.|+|.+++|...+. ...+.|++.||-
T Consensus 57 ~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~---K~~d~l~~~g~G 111 (277)
T PRK00994 57 EEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGK---KVKDAMEEQGLG 111 (277)
T ss_pred HhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCcc---chHHHHHhcCCc
Confidence 3444556 44455667888777777788899999999984332 233778877765
No 340
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=43.93 E-value=66 Score=25.70 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=16.3
Q ss_pred cchhhHHHhhhccCEEEEeE
Q 022007 13 LSANNITALFDSVDAFLFDC 32 (304)
Q Consensus 13 ~~~~~~~~~~~~~k~i~fDi 32 (304)
.+.+.+.+.+++-+.+++|+
T Consensus 38 vs~~el~~~l~~~~~~lIDV 57 (162)
T TIGR03865 38 LDTEAAQALLARGPVALIDV 57 (162)
T ss_pred cCHHHHHHHHhCCCcEEEEC
Confidence 55677888888878899999
No 341
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=43.84 E-value=31 Score=24.82 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=12.5
Q ss_pred hhhHHHhhh-ccCEEEEeE
Q 022007 15 ANNITALFD-SVDAFLFDC 32 (304)
Q Consensus 15 ~~~~~~~~~-~~k~i~fDi 32 (304)
.+.+.+.+. .-+.+++|+
T Consensus 3 ~~~~~~~l~~~~~~~iiDv 21 (106)
T cd01519 3 FEEVKNLPNPHPNKVLIDV 21 (106)
T ss_pred HHHHHHhcCCCCCEEEEEC
Confidence 445666666 556889999
No 342
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=43.76 E-value=66 Score=31.28 Aligned_cols=59 Identities=15% Similarity=0.217 Sum_probs=45.9
Q ss_pred cCEEEEeE-EEE--cCCccCccHHHHHHHHHHCCCcEEEEeCCCCcC---HHHHHHHHHhCCCcc
Q 022007 25 VDAFLFDC-VIW--KGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRS---RRQYAHKFHSLGVSV 83 (304)
Q Consensus 25 ~k~i~fDi-tL~--~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~---~~~~~~~l~~lG~~~ 83 (304)
--+-+-|| ||. -.+..-|-+.|+|+..++.+.|++++-|-..++ ++.+.+.|...|+.+
T Consensus 220 RGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~ 284 (683)
T KOG1145|consen 220 RGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVV 284 (683)
T ss_pred ccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccH
Confidence 44567899 665 466789999999999999999999999866554 566667777777653
No 343
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=43.58 E-value=45 Score=22.79 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=11.4
Q ss_pred ccHHHHHHHHHHCCCcEEEEe
Q 022007 42 DGVRQTLDVLRSKGKKLIFVT 62 (304)
Q Consensus 42 ~~a~eal~~L~~~G~~~~i~T 62 (304)
+...++++.++++|.+++.+|
T Consensus 61 ~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 61 EELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred HHHHHHHHHHHHcCCeEEEEe
Confidence 334555555555565555554
No 344
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=43.42 E-value=97 Score=24.57 Aligned_cols=40 Identities=15% Similarity=0.157 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHcCCCCCcE-EEEcCCchhhHHHHHHcCCeEE
Q 022007 227 STFMMEILSKKFQIASSRM-CMVGDRLDTDILFGQNAGCKTL 267 (304)
Q Consensus 227 ~~~~~~~al~~lg~~~~~~-~~IGD~~~~Di~~a~~aG~~ti 267 (304)
+.+.++.+.+.+.-..-.. +.+||+ .+|+++=+++|+..-
T Consensus 103 K~~~l~~i~~~~~~~~~~f~~~~gn~-~~D~~~y~~~gi~~~ 143 (157)
T smart00775 103 KIACLRDIKSLFPPQGNPFYAGFGNR-ITDVISYSAVGIPPS 143 (157)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCC-chhHHHHHHcCCChh
Confidence 4556666665543222234 458999 899999999997543
No 345
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=43.27 E-value=1e+02 Score=29.79 Aligned_cols=94 Identities=20% Similarity=0.133 Sum_probs=62.5
Q ss_pred CCCCHHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHHHHhhCCCC-cccCCCcHHHHHHHHHHcCC
Q 022007 163 PHINYYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEP-IVVGKPSTFMMEILSKKFQI 240 (304)
Q Consensus 163 ~~~~~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-~~~gKP~~~~~~~al~~lg~ 240 (304)
...--+++.+-...|++. |++ +.||..+.. -++.+....|.|. ....|| +-=..+.++..-
T Consensus 445 kDivK~Gi~ERf~elR~M-gIkTvM~TGDN~~--------------TAa~IA~EAGVDdfiAeatP--EdK~~~I~~eQ~ 507 (681)
T COG2216 445 KDIVKPGIKERFAELRKM-GIKTVMITGDNPL--------------TAAAIAAEAGVDDFIAEATP--EDKLALIRQEQA 507 (681)
T ss_pred hhhcchhHHHHHHHHHhc-CCeEEEEeCCCHH--------------HHHHHHHHhCchhhhhcCCh--HHHHHHHHHHHh
Confidence 345567888888899988 776 556664441 1344555666655 334554 333344444454
Q ss_pred CCCcEEEEcCCchhhHHHHHHcCCeEEEEccCCCCcc
Q 022007 241 ASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQS 277 (304)
Q Consensus 241 ~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~ 277 (304)
+-.=+.|.||. .||-.+..+|. ++++|-.++..
T Consensus 508 ~grlVAMtGDG-TNDAPALAqAd---Vg~AMNsGTqA 540 (681)
T COG2216 508 EGRLVAMTGDG-TNDAPALAQAD---VGVAMNSGTQA 540 (681)
T ss_pred cCcEEEEcCCC-CCcchhhhhcc---hhhhhccccHH
Confidence 55568999999 99999999999 88887665543
No 346
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=42.80 E-value=37 Score=23.81 Aligned_cols=29 Identities=21% Similarity=0.420 Sum_probs=20.3
Q ss_pred cCCccCccHHHHHHHHHHCCCcEEEEeCC
Q 022007 36 KGDKLIDGVRQTLDVLRSKGKKLIFVTNN 64 (304)
Q Consensus 36 ~~~~~~~~a~eal~~L~~~G~~~~i~Tn~ 64 (304)
+..+...|..+.++.+++....++|+.++
T Consensus 8 ragkl~~G~~~v~kai~~gkaklViiA~D 36 (82)
T PRK13602 8 QAKSIVIGTKQTVKALKRGSVKEVVVAED 36 (82)
T ss_pred hcCCEEEcHHHHHHHHHcCCeeEEEEECC
Confidence 34567889999999998665555555543
No 347
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=42.48 E-value=1.3e+02 Score=32.26 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=27.0
Q ss_pred HHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 46 QTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 46 eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
+.|-+|++.||+|.|.|- -.|...-+.+.|...|++
T Consensus 690 KLL~rLk~~GHrVLIFSQ-MVRmLDIL~eYL~~r~yp 725 (1373)
T KOG0384|consen 690 KLLPRLKEGGHRVLIFSQ-MVRMLDILAEYLSLRGYP 725 (1373)
T ss_pred HHHHHHhcCCceEEEhHH-HHHHHHHHHHHHHHcCCc
Confidence 566778888888888886 556667777777777776
No 348
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=42.30 E-value=44 Score=26.34 Aligned_cols=49 Identities=20% Similarity=0.414 Sum_probs=34.7
Q ss_pred cchhhHHHhhhccCEEEEeE-EEEcCCccCc-cHHHHHHHHHHCCCcEEEEeC
Q 022007 13 LSANNITALFDSVDAFLFDC-VIWKGDKLID-GVRQTLDVLRSKGKKLIFVTN 63 (304)
Q Consensus 13 ~~~~~~~~~~~~~k~i~fDi-tL~~~~~~~~-~a~eal~~L~~~G~~~~i~Tn 63 (304)
.+.+.+.+.+.++.-. .+. |+--|+ ..+ ...+.++.+++.|+++.+-||
T Consensus 46 lt~eel~~~I~~~~~~-~~gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i~l~Tg 96 (147)
T TIGR02826 46 LTPEYLTKTLDKYRSL-ISCVLFLGGE-WNREALLSLLKIFKEKGLKTCLYTG 96 (147)
T ss_pred CCHHHHHHHHHHhCCC-CCEEEEechh-cCHHHHHHHHHHHHHCCCCEEEECC
Confidence 5666676776665422 234 666666 554 467999999999999999998
No 349
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=42.27 E-value=38 Score=29.55 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=25.1
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHH
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQY 72 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~ 72 (304)
.+..+...++++.++++|.+++.+|++..-+...+
T Consensus 185 sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ 219 (278)
T PRK11557 185 SGERRELNLAADEALRVGAKVLAITGFTPNALQQR 219 (278)
T ss_pred CCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHh
Confidence 33455567888889999999999998655554443
No 350
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=42.20 E-value=20 Score=28.94 Aligned_cols=43 Identities=28% Similarity=0.483 Sum_probs=29.6
Q ss_pred hhccCEEEEeE-EEEcCCccC-c-------cHHHHHHHHHHCCCcEEEEeCC
Q 022007 22 FDSVDAFLFDC-VIWKGDKLI-D-------GVRQTLDVLRSKGKKLIFVTNN 64 (304)
Q Consensus 22 ~~~~k~i~fDi-tL~~~~~~~-~-------~a~eal~~L~~~G~~~~i~Tn~ 64 (304)
.++.+.+++|. +.|-.+... + ...+.++.|++.|..++++||.
T Consensus 74 ~~~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tvVlVs~E 125 (170)
T PRK05800 74 AAPGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKIILVTNE 125 (170)
T ss_pred cCCCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 34467899999 666433222 1 2246778888999999999984
No 351
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=41.99 E-value=97 Score=28.91 Aligned_cols=63 Identities=6% Similarity=0.086 Sum_probs=37.7
Q ss_pred CCCCcEEEEcCCchhhHHHH---HHcCCeEEEEccCCCCccccCCCCCCCCCcEEE---CCHHHHHHhhh
Q 022007 240 IASSRMCMVGDRLDTDILFG---QNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYT---NQVSDILELLG 303 (304)
Q Consensus 240 ~~~~~~~~IGD~~~~Di~~a---~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~---~~l~el~~~l~ 303 (304)
+.-.+++++||. ..=+..+ .+.||..+.+.+++...++..........+..+ .++.++.+++.
T Consensus 272 l~Gkrv~i~gd~-~~~~~l~~~L~elGm~~v~~~t~~~~~~~~~~~~~~l~~~~~v~~~~d~~~l~~~i~ 340 (407)
T TIGR01279 272 LRGKKIFFFGDN-LLELPLARFLKRCGMEVVECGTPYIHRRFHAAELALLEGGVRIVEQPDFHRQLQRIR 340 (407)
T ss_pred cCCCEEEEECCc-hHHHHHHHHHHHCCCEEEEecCCCCChHHHHHHHhhcCCCCeEEeCCCHHHHHHHHH
Confidence 455689999998 5555444 668999999999887554321100001112222 57777766653
No 352
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=41.98 E-value=31 Score=32.63 Aligned_cols=36 Identities=42% Similarity=0.538 Sum_probs=24.3
Q ss_pred ccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHh--CCC
Q 022007 42 DGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHS--LGV 81 (304)
Q Consensus 42 ~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~--lG~ 81 (304)
|.....|++||+.|+.++++|| |...+.+..-+ +|-
T Consensus 186 ~~l~~~L~~lr~~GKklFLiTN----S~~~yt~~~M~yl~g~ 223 (448)
T PF05761_consen 186 PKLPPWLERLRSAGKKLFLITN----SPFDYTNAVMSYLLGP 223 (448)
T ss_dssp CHHHHHHHHHHCCT-EEEEE-S----S-HHHHHHHHHHHCGC
T ss_pred chHHHHHHHHHhcCceEEEecC----CCCchhhhhhhhccCC
Confidence 4567999999999999999999 45555554332 555
No 353
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=41.63 E-value=27 Score=23.61 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=16.4
Q ss_pred HHHHHHHHcCCCCCcEEEEcCC
Q 022007 230 MMEILSKKFQIASSRMCMVGDR 251 (304)
Q Consensus 230 ~~~~al~~lg~~~~~~~~IGD~ 251 (304)
.+..+|++.|++..+++.|||-
T Consensus 44 Gv~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T PF09269_consen 44 GVEKALRKAGAKEGDTVRIGDY 65 (69)
T ss_dssp THHHHHHTTT--TT-EEEETTE
T ss_pred CHHHHHHHcCCCCCCEEEEcCE
Confidence 3778888999999999999984
No 354
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=41.45 E-value=58 Score=27.43 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=40.4
Q ss_pred cchhhHHHhhhccCEEEEeE----EEEcCCc--cCcc-HHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHH
Q 022007 13 LSANNITALFDSVDAFLFDC----VIWKGDK--LIDG-VRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKF 76 (304)
Q Consensus 13 ~~~~~~~~~~~~~k~i~fDi----tL~~~~~--~~~~-a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l 76 (304)
.+-+++.+.+.+.+.+ |+. |.+.|.. +.+. +.+.++.+++.|+++++.||+. .+.+.+.+.+
T Consensus 19 ~t~eel~~~~~~~~~f-~~~sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~-~~~~~~~~l~ 87 (213)
T PRK10076 19 ITLDALEREVMKDDIF-FRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGD-APASKLLPLA 87 (213)
T ss_pred cCHHHHHHHHHhhhHh-hcCCCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCC-CCHHHHHHHH
Confidence 3455666666666654 332 5555554 3444 5799999999999999999964 4555444443
No 355
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=41.40 E-value=72 Score=24.56 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=31.1
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 40 LIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 40 ~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
+++.+..-|..|+++|+..+++|+. ..++...+.|+.+-..
T Consensus 45 fY~Di~rIL~dLk~~GVtl~~ASRt--~ap~iA~q~L~~fkvk 85 (144)
T KOG4549|consen 45 FYDDIRRILVDLKKLGVTLIHASRT--MAPQIASQGLETFKVK 85 (144)
T ss_pred eccchhHHHHHHHhcCcEEEEecCC--CCHHHHHHHHHHhccC
Confidence 5888999999999999999999982 3455555556655543
No 356
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=41.19 E-value=81 Score=23.10 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=11.7
Q ss_pred hhHHHhhhccCEEEEeE
Q 022007 16 NNITALFDSVDAFLFDC 32 (304)
Q Consensus 16 ~~~~~~~~~~k~i~fDi 32 (304)
+.+.+.+.+-+.+++|+
T Consensus 4 ~~l~~~l~~~~~~iiDv 20 (118)
T cd01449 4 EEVLANLDSGDVQLVDA 20 (118)
T ss_pred HHHHHhcCCCCcEEEeC
Confidence 45556665556889999
No 357
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=40.90 E-value=1.8e+02 Score=25.94 Aligned_cols=73 Identities=14% Similarity=0.137 Sum_probs=50.2
Q ss_pred EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCH--HHHHHHHHhCCCc--cCCCCeech-HHHHHHHHHhCCCC
Q 022007 33 VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSR--RQYAHKFHSLGVS--VSEDEIFSS-SFAAAMYLKVNNFP 105 (304)
Q Consensus 33 tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~--~~~~~~l~~lG~~--~~~~~i~~~-~~~~~~~l~~~~~~ 105 (304)
||.-.....+.|.+|=+.|+++|+...++--.|-+|. +.+.+..++-|+= +.+..|+.. +.+.++++.+++..
T Consensus 196 tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~A~~t~~IvT~EeHsi~GGlGsaVAEvlse~~p~ 273 (312)
T COG3958 196 TIIATGVMVAEALEAAEILKKEGISAAVINMFTIKPIDEQAILKAARETGRIVTAEEHSIIGGLGSAVAEVLSENGPT 273 (312)
T ss_pred EEEecCcchHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHHHhhcCcEEEEecceeecchhHHHHHHHHhcCCc
Confidence 4444444566788999999999999988877676664 4444555666754 445566655 67778888887643
No 358
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=40.80 E-value=2.3e+02 Score=24.16 Aligned_cols=72 Identities=18% Similarity=0.192 Sum_probs=45.7
Q ss_pred CCCCccccchhhHHHhhhccCEEEEeE-EEEcCC-----ccCccHHHHHHHHHHCC--CcE-EEEeCCCCcCHHHHHHHH
Q 022007 6 GQAPAELLSANNITALFDSVDAFLFDC-VIWKGD-----KLIDGVRQTLDVLRSKG--KKL-IFVTNNSRRSRRQYAHKF 76 (304)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~k~i~fDi-tL~~~~-----~~~~~a~eal~~L~~~G--~~~-~i~Tn~s~r~~~~~~~~l 76 (304)
+|.+....+.+.+.++++.....=+|. -+..+. ...+...+.++++++.+ .++ ++++|+ ....+.+
T Consensus 9 ~q~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~-----~~~i~~a 83 (265)
T cd03174 9 LQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR-----EKGIERA 83 (265)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc-----hhhHHHH
Confidence 556666678888888777765554555 222221 13467789999999887 566 444442 5556667
Q ss_pred HhCCCc
Q 022007 77 HSLGVS 82 (304)
Q Consensus 77 ~~lG~~ 82 (304)
.+.|++
T Consensus 84 ~~~g~~ 89 (265)
T cd03174 84 LEAGVD 89 (265)
T ss_pred HhCCcC
Confidence 777765
No 359
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=40.80 E-value=54 Score=27.23 Aligned_cols=29 Identities=3% Similarity=0.084 Sum_probs=20.4
Q ss_pred cCCccCccHHHHHHHHHHCCCcEEEEeCC
Q 022007 36 KGDKLIDGVRQTLDVLRSKGKKLIFVTNN 64 (304)
Q Consensus 36 ~~~~~~~~a~eal~~L~~~G~~~~i~Tn~ 64 (304)
....--+...++++.+|++|.+++.+|+.
T Consensus 117 S~SG~s~~v~~a~~~Ak~~G~~vI~IT~~ 145 (196)
T PRK10886 117 STRGNSRDIVKAVEAAVTRDMTIVALTGY 145 (196)
T ss_pred eCCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 33334455678888888888888888874
No 360
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=40.74 E-value=1e+02 Score=25.03 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=40.5
Q ss_pred ccchhhHHHhhhccCEEEEeEEEEcCCcc--CccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCC
Q 022007 12 LLSANNITALFDSVDAFLFDCVIWKGDKL--IDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLG 80 (304)
Q Consensus 12 ~~~~~~~~~~~~~~k~i~fDitL~~~~~~--~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG 80 (304)
.++.+.+.+++.+.... ...+.+.|..+ .+...+.++.+++.|+.+.+.||++ .. ...+.+.+.|
T Consensus 46 ~~~~~~i~~~i~~~~~~-~~~i~~sGGEPll~~~l~~li~~~~~~g~~v~i~TNg~--~~-~~l~~l~~~g 112 (191)
T TIGR02495 46 EIEVEFLLEFLRSRQGL-IDGVVITGGEPTLQAGLPDFLRKVRELGFEVKLDTNGS--NP-RVLEELLEEG 112 (191)
T ss_pred cCCHHHHHHHHHHhcCC-CCeEEEECCcccCcHhHHHHHHHHHHCCCeEEEEeCCC--CH-HHHHHHHhcC
Confidence 35667777776664322 22233334433 3456799999999999999999965 33 3444555555
No 361
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=40.62 E-value=64 Score=31.85 Aligned_cols=65 Identities=22% Similarity=0.388 Sum_probs=43.4
Q ss_pred ccCEEEEeE--EEEcCC---cc---------CccHHHHHHHHHHCCCcEEEEeCCCCcCH------HHHHHHHHhCCCcc
Q 022007 24 SVDAFLFDC--VIWKGD---KL---------IDGVRQTLDVLRSKGKKLIFVTNNSRRSR------RQYAHKFHSLGVSV 83 (304)
Q Consensus 24 ~~k~i~fDi--tL~~~~---~~---------~~~a~eal~~L~~~G~~~~i~Tn~s~r~~------~~~~~~l~~lG~~~ 83 (304)
+-|+|+-|| |+-+++ ++ -.|..+...+.+++|++++++|- |.. .++...+++-|..+
T Consensus 529 n~kIVISDIDGTITKSDvLGh~lp~iGkDWTh~GVAkLyt~Ik~NGYk~lyLSA---RaIgQA~~TR~yL~nv~QdG~~L 605 (738)
T KOG2116|consen 529 NDKIVISDIDGTITKSDVLGHVLPMIGKDWTHTGVAKLYTKIKENGYKILYLSA---RAIGQADSTRQYLKNVEQDGKKL 605 (738)
T ss_pred CCcEEEecCCCceEhhhhhhhhhhhhcCcchhhhHHHHHHHHHhCCeeEEEEeh---hhhhhhHHHHHHHHHHhhcCccC
Confidence 467889999 887654 22 23667888889999999999997 543 24444455556555
Q ss_pred CCCCeech
Q 022007 84 SEDEIFSS 91 (304)
Q Consensus 84 ~~~~i~~~ 91 (304)
+..-|+.|
T Consensus 606 PdGPViLS 613 (738)
T KOG2116|consen 606 PDGPVILS 613 (738)
T ss_pred CCCCEEeC
Confidence 54444433
No 362
>PRK11660 putative transporter; Provisional
Probab=40.31 E-value=63 Score=31.62 Aligned_cols=74 Identities=14% Similarity=0.088 Sum_probs=43.1
Q ss_pred HhhhccCEEEEeE--EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc--cCCCCeechHHHH
Q 022007 20 ALFDSVDAFLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS--VSEDEIFSSSFAA 95 (304)
Q Consensus 20 ~~~~~~k~i~fDi--tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~--~~~~~i~~~~~~~ 95 (304)
+...+.+.+++|+ +-+-+..-+..-.+..+++++ |.++.+ +| ....+.+.+++.|+. .....++.+...+
T Consensus 486 ~~~~~~~~VVlD~~~V~~iDssg~~~L~~l~~~l~~-g~~l~l-~~----l~~~v~~~l~~~gl~~~~~~~~if~~~~~A 559 (568)
T PRK11660 486 SRTEGKRIVVLQWDAVPVLDAGGLDAFQRFVKRLPE-GCELRI-CN----LQFQPLRTLARAGIQPIPGRLAFYPTLREA 559 (568)
T ss_pred hhCCCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHC-CCEEEE-ec----CChHHHHHHHHCCChhhcCcccccCCHHHH
Confidence 3345678888998 333222233333577788888 888754 44 233577888888874 3344555554444
Q ss_pred HHHH
Q 022007 96 AMYL 99 (304)
Q Consensus 96 ~~~l 99 (304)
.+.+
T Consensus 560 l~~~ 563 (568)
T PRK11660 560 LADL 563 (568)
T ss_pred HHHH
Confidence 3333
No 363
>PRK15482 transcriptional regulator MurR; Provisional
Probab=40.29 E-value=45 Score=29.26 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=26.6
Q ss_pred EcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHH
Q 022007 35 WKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRR 70 (304)
Q Consensus 35 ~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~ 70 (304)
....+--+...++++.++++|.+++.+|++..-+..
T Consensus 189 iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la 224 (285)
T PRK15482 189 ISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLR 224 (285)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchH
Confidence 344445566789999999999999999995544443
No 364
>PRK06242 flavodoxin; Provisional
Probab=39.89 E-value=98 Score=23.87 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=35.1
Q ss_pred hccCEEEEeE-EEEcCCccCccHHHHHHHHHH-CCCcEEEEeCCCCcC---HHHHHHHHHhCCCcc
Q 022007 23 DSVDAFLFDC-VIWKGDKLIDGVRQTLDVLRS-KGKKLIFVTNNSRRS---RRQYAHKFHSLGVSV 83 (304)
Q Consensus 23 ~~~k~i~fDi-tL~~~~~~~~~a~eal~~L~~-~G~~~~i~Tn~s~r~---~~~~~~~l~~lG~~~ 83 (304)
.++++++|=. |- ...+.+..+++|+++.. .|+++++++...... ...+.+.++.+|+.+
T Consensus 42 ~~~d~ii~g~pvy--~~~~~~~~~~fl~~~~~~~~k~~~~f~t~g~~~~~~~~~l~~~l~~~g~~~ 105 (150)
T PRK06242 42 SEYDLIGFGSGIY--FGKFHKSLLKLIEKLPPVSGKKAFIFSTSGLPFLKYHKALKKKLKEKGFEI 105 (150)
T ss_pred hHCCEEEEeCchh--cCCcCHHHHHHHHhhhhhcCCeEEEEECCCCCcchHHHHHHHHHHHCCCEE
Confidence 3555555533 32 23456667888988865 678876665434333 345556677777763
No 365
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=39.80 E-value=1.6e+02 Score=23.46 Aligned_cols=10 Identities=10% Similarity=0.408 Sum_probs=8.9
Q ss_pred hccCEEEEeE
Q 022007 23 DSVDAFLFDC 32 (304)
Q Consensus 23 ~~~k~i~fDi 32 (304)
.+|+.+++|.
T Consensus 91 ~~~d~viiDt 100 (179)
T cd03110 91 EGAELIIIDG 100 (179)
T ss_pred cCCCEEEEEC
Confidence 6899999998
No 366
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=39.11 E-value=1.7e+02 Score=22.64 Aligned_cols=40 Identities=15% Similarity=0.351 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHCCC--cEEEEeCCCCcCHHHH---HHHHHhCCCc
Q 022007 43 GVRQTLDVLRSKGK--KLIFVTNNSRRSRRQY---AHKFHSLGVS 82 (304)
Q Consensus 43 ~a~eal~~L~~~G~--~~~i~Tn~s~r~~~~~---~~~l~~lG~~ 82 (304)
..++.+++|+++|. ..+++-++...+.+.. .++|+++|++
T Consensus 68 ~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~ 112 (134)
T TIGR01501 68 DCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFD 112 (134)
T ss_pred HHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCC
Confidence 34566667777764 3344555334444443 4568888875
No 367
>PRK06683 hypothetical protein; Provisional
Probab=38.69 E-value=49 Score=23.21 Aligned_cols=47 Identities=11% Similarity=0.261 Sum_probs=29.2
Q ss_pred cCCccCccHHHHHHHHHHC-CCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 36 KGDKLIDGVRQTLDVLRSK-GKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 36 ~~~~~~~~a~eal~~L~~~-G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
+.....-|..+.++.+++. .+.++++.|.+.+....+.+.-+..+++
T Consensus 8 ~agk~v~G~~~v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vp 55 (82)
T PRK06683 8 NAENVVVGHKRTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIP 55 (82)
T ss_pred hCCCEEEcHHHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCC
Confidence 4456778999999999854 4556666664444444444444445555
No 368
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=38.61 E-value=8.3 Score=31.18 Aligned_cols=40 Identities=30% Similarity=0.736 Sum_probs=25.5
Q ss_pred cCEEEEeE-EEEcCCcc----------CccHHHHHHHHHHCCCcEEEEeCC
Q 022007 25 VDAFLFDC-VIWKGDKL----------IDGVRQTLDVLRSKGKKLIFVTNN 64 (304)
Q Consensus 25 ~k~i~fDi-tL~~~~~~----------~~~a~eal~~L~~~G~~~~i~Tn~ 64 (304)
.+.+++|+ |+|-.+.. .....+.++.+++....++++||.
T Consensus 73 ~~~vLlDclt~wl~n~l~~~~~~~~~~~~~i~~~l~~l~~~~~~lViVsnE 123 (167)
T PF02283_consen 73 GDVVLLDCLTLWLANLLFAEEDDEEDILEEIERLLEALRERNADLVIVSNE 123 (167)
T ss_dssp T-EEEEE-HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH--SEEEEEEE-
T ss_pred CCeEEEeCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCCCEEEEEcC
Confidence 48999999 87754332 223457778888889999999994
No 369
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=38.51 E-value=41 Score=22.74 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=18.9
Q ss_pred HHHHHHHcCCCCCcEEEEcCC
Q 022007 231 MEILSKKFQIASSRMCMVGDR 251 (304)
Q Consensus 231 ~~~al~~lg~~~~~~~~IGD~ 251 (304)
+..+|+..|+++.+++.|||-
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T TIGR03595 45 VEDALRKAGAKDGDTVRIGDF 65 (69)
T ss_pred HHHHHHHcCCCCCCEEEEccE
Confidence 778889999999999999984
No 370
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=38.39 E-value=63 Score=29.10 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=32.8
Q ss_pred ccCccHHHHHHHHHHCC-CcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 39 KLIDGVRQTLDVLRSKG-KKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 39 ~~~~~a~eal~~L~~~G-~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
.++||.....+.|.+.| .+++++||..--....+.+++..-+|+
T Consensus 196 ~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~~~P 240 (373)
T COG4850 196 QVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNRNFP 240 (373)
T ss_pred CCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcCCCC
Confidence 36999999999999988 899999994333444555556555666
No 371
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=38.19 E-value=63 Score=28.07 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=38.0
Q ss_pred EEEcCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCcC-----------HHHHHHHHHhCCCccCCCC
Q 022007 33 VIWKGDK-LIDGVRQTLDVLRSKGKKLIFVTNNSRRS-----------RRQYAHKFHSLGVSVSEDE 87 (304)
Q Consensus 33 tL~~~~~-~~~~a~eal~~L~~~G~~~~i~Tn~s~r~-----------~~~~~~~l~~lG~~~~~~~ 87 (304)
++..... +.+.-.++|+..-++|.+++++.+..... ...+...|...|+.+..+-
T Consensus 202 vi~~P~~~ls~~e~~~l~~yl~~GG~ll~~~d~~~~~~~~~~~~~~~~~~~L~~lL~~~Gi~~~~~~ 268 (271)
T PF09822_consen 202 VIAGPKTDLSEEELYALDQYLMNGGKLLILLDPFSVELQGLWAGGAQRDSNLNDLLEEYGIRINPGL 268 (271)
T ss_pred EEECCCCCCCHHHHHHHHHHHHcCCeEEEEECCcccccccccccccccccCHHHHHHHcCCEeCCCE
Confidence 3444555 45567899999889999999988854333 2366777888888765543
No 372
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=37.98 E-value=1.1e+02 Score=25.23 Aligned_cols=82 Identities=16% Similarity=0.306 Sum_probs=46.8
Q ss_pred HHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHh-CCCccCCCCeechHH------HHHHHHHhCCCCCCCeEEEEcCh
Q 022007 44 VRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHS-LGVSVSEDEIFSSSF------AAAMYLKVNNFPQENKVYVIGGE 116 (304)
Q Consensus 44 a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~-lG~~~~~~~i~~~~~------~~~~~l~~~~~~~~~~v~~~g~~ 116 (304)
|++.|++=+++|-.++|+|+.|.--.+.+.+.|.+ +.++-----+++... .-..|+.+++.. +.+-.++
T Consensus 119 A~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk~k~~qy~Kt~~i~~~~~~----IhYGDSD 194 (237)
T COG3700 119 ARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGDKPKPGQYTKTQWIQDKNIR----IHYGDSD 194 (237)
T ss_pred HHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccCCCCcccccccHHHHhcCce----EEecCCc
Confidence 55667777789999999999444434555565553 554311011111100 112467766653 6666666
Q ss_pred hHHHHHHHcCCcc
Q 022007 117 GILEELRQAGYTG 129 (304)
Q Consensus 117 ~~~~~l~~~g~~~ 129 (304)
......++.|.+-
T Consensus 195 ~Di~AAkeaG~Rg 207 (237)
T COG3700 195 NDITAAKEAGARG 207 (237)
T ss_pred hhhhHHHhcCccc
Confidence 6777777777654
No 373
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=37.91 E-value=68 Score=26.48 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=31.4
Q ss_pred EEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCC
Q 022007 34 IWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLG 80 (304)
Q Consensus 34 L~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG 80 (304)
|+..-.+=||-+++++..++++++++++|.+. ---+...|++++
T Consensus 68 llk~i~Idp~fKef~e~ike~di~fiVvSsGm---~~fI~~lfe~iv 111 (220)
T COG4359 68 LLKDIKIDPGFKEFVEWIKEHDIPFIVVSSGM---DPFIYPLFEGIV 111 (220)
T ss_pred HHhhcccCccHHHHHHHHHHcCCCEEEEeCCC---chHHHHHHHhhc
Confidence 44445677899999999999999999999843 223344555543
No 374
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.90 E-value=27 Score=32.08 Aligned_cols=112 Identities=18% Similarity=0.221 Sum_probs=61.3
Q ss_pred hHHHhhhccCEEEEeE--EEEcCCccCccHHHHHHHHHHCCCcEEEEe--CC-CCcCHH--HHHHHHHh-CCC-ccCCCC
Q 022007 17 NITALFDSVDAFLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVT--NN-SRRSRR--QYAHKFHS-LGV-SVSEDE 87 (304)
Q Consensus 17 ~~~~~~~~~k~i~fDi--tL~~~~~~~~~a~eal~~L~~~G~~~~i~T--n~-s~r~~~--~~~~~l~~-lG~-~~~~~~ 87 (304)
--.++++.+|+++||| +=.+.-+-+.--..++++..+.|++++++= |- .++..+ .+...++. .|. +++.-.
T Consensus 71 Pt~~mL~~vDvlvfDiQDvG~R~YTYi~Tl~~~MeAaa~~g~~vvVLDRPNPl~G~~veGp~l~~~~~SFvG~~~iP~rH 150 (365)
T PF07075_consen 71 PTPEMLKGVDVLVFDIQDVGVRFYTYISTLYYVMEAAAENGKPVVVLDRPNPLGGRYVEGPILDPEFRSFVGMYPIPIRH 150 (365)
T ss_pred CCHHHHhCCCEEEEeCccCCchHHHHHHHHHHHHHHHHHhCCeEEEEeCCCCCCCCccccCCcCcccccccCCCcccccc
Confidence 3457788999999999 322222223333577777788999998875 21 111111 11122333 343 355566
Q ss_pred eechHHHHHHHHHhCCCCCCCeEEEEcChhHHHH--HHHcCCc
Q 022007 88 IFSSSFAAAMYLKVNNFPQENKVYVIGGEGILEE--LRQAGYT 128 (304)
Q Consensus 88 i~~~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~--l~~~g~~ 128 (304)
-+|.++.+.-+-.+.......+.-|+-..++.+. ..+.|+.
T Consensus 151 GmTiGELA~~~n~e~~~~~~~~L~VI~m~gw~R~m~~~~Tgl~ 193 (365)
T PF07075_consen 151 GMTIGELARMFNGEFWLSGKCDLTVIPMEGWRRSMWFDDTGLP 193 (365)
T ss_pred CCCHHHHHHHHHhhcCCCCCCceEEEeCCCCCCCCCchhcCCC
Confidence 6788887654434333312245667766666442 3444444
No 375
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=37.79 E-value=4.9e+02 Score=27.09 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=34.7
Q ss_pred cEEEEcCCchhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEE--CCHHHHHHh
Q 022007 244 RMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYT--NQVSDILEL 301 (304)
Q Consensus 244 ~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~--~~l~el~~~ 301 (304)
=+..-||. .||-.+.++|. ++.+||..-.+ ..+ ...|.++ +++..++..
T Consensus 740 VVAVTGDG-TNDaPALkeAD---VGlAMGIaGTe-VAK----EaSDIIi~DDNFssIVk~ 790 (1034)
T KOG0204|consen 740 VVAVTGDG-TNDAPALKEAD---VGLAMGIAGTE-VAK----EASDIIILDDNFSSIVKA 790 (1034)
T ss_pred EEEEecCC-CCCchhhhhcc---cchhccccchh-hhh----hhCCeEEEcCchHHHHHH
Confidence 35566999 99999999999 99999986544 332 2577754 445555543
No 376
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=37.72 E-value=1.3e+02 Score=22.63 Aligned_cols=50 Identities=22% Similarity=0.318 Sum_probs=36.1
Q ss_pred EEEcCCccCccHHHHHHHHHHCCCcEEEE-eCCCCcCHHHHHHHHHhCCCcc
Q 022007 33 VIWKGDKLIDGVRQTLDVLRSKGKKLIFV-TNNSRRSRRQYAHKFHSLGVSV 83 (304)
Q Consensus 33 tL~~~~~~~~~a~eal~~L~~~G~~~~i~-Tn~s~r~~~~~~~~l~~lG~~~ 83 (304)
|||.....- ..++|++.|++.|+.+-++ --.++.+++++.+.++.+|..+
T Consensus 4 tiy~~p~C~-t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g~~~ 54 (117)
T COG1393 4 TIYGNPNCS-TCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLGDGV 54 (117)
T ss_pred EEEeCCCCh-HHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcCccH
Confidence 555433332 4689999999999997433 3334588999999999999653
No 377
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=37.70 E-value=46 Score=24.74 Aligned_cols=48 Identities=25% Similarity=0.213 Sum_probs=29.4
Q ss_pred cCCccCccHHHHHHHHHHCCCc-EEEEeCCCCcCHHHHHHHHHhCCCcc
Q 022007 36 KGDKLIDGVRQTLDVLRSKGKK-LIFVTNNSRRSRRQYAHKFHSLGVSV 83 (304)
Q Consensus 36 ~~~~~~~~a~eal~~L~~~G~~-~~i~Tn~s~r~~~~~~~~l~~lG~~~ 83 (304)
+....+-|..+.++.++..... |++++|.+.++...+...-+..++++
T Consensus 22 raGKlv~G~~~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv 70 (108)
T PTZ00106 22 KSGKYTLGTKSTLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGV 70 (108)
T ss_pred HhCCeeecHHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCE
Confidence 3456788999999999865544 45555544444455554444455553
No 378
>PRK13936 phosphoheptose isomerase; Provisional
Probab=37.56 E-value=74 Score=26.30 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=17.2
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCC
Q 022007 41 IDGVRQTLDVLRSKGKKLIFVTNNS 65 (304)
Q Consensus 41 ~~~a~eal~~L~~~G~~~~i~Tn~s 65 (304)
-+...++++.++++|.+++.+|++.
T Consensus 124 t~~~~~~~~~ak~~g~~iI~IT~~~ 148 (197)
T PRK13936 124 SANVIQAIQAAHEREMHVVALTGRD 148 (197)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4445677777777777777777743
No 379
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=37.33 E-value=29 Score=29.47 Aligned_cols=44 Identities=16% Similarity=0.125 Sum_probs=25.6
Q ss_pred EEeE--EEEcCC------ccCccHHHHHHHHHHCC-CcEEEEeCCCCcCHHHHHHH
Q 022007 29 LFDC--VIWKGD------KLIDGVRQTLDVLRSKG-KKLIFVTNNSRRSRRQYAHK 75 (304)
Q Consensus 29 ~fDi--tL~~~~------~~~~~a~eal~~L~~~G-~~~~i~Tn~s~r~~~~~~~~ 75 (304)
|||. ||..-. .+.+++.++|++|-+.. ..++|+|+ |+.+....+
T Consensus 1 ~lDyDGTL~p~~~~p~~~~~~~~~~~~L~~La~~~~~~v~IvSG---R~~~~~~~~ 53 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDPDAAVPPPELRELLRALAADPNNTVAIVSG---RSLDDLERF 53 (235)
T ss_dssp EEE-TTTSS---S-GGG----HHHHHHHHHHHHHSE--EEEE-S---S-HHHHHHH
T ss_pred CcccCCccCCCCCCccccCCCHHHHHHHHHHhccCCCEEEEEEe---CCHHHhHHh
Confidence 5777 776321 25667899999998764 47999999 999883333
No 380
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated
Probab=36.78 E-value=2.5e+02 Score=23.42 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=39.8
Q ss_pred CCcEEEEeCCCCcCHHHHHHHHHhCCCccC--CCCeechHHHHHHHHHhCCCCCCCeEEEEcChhHHHHHHHcCC
Q 022007 55 GKKLIFVTNNSRRSRRQYAHKFHSLGVSVS--EDEIFSSSFAAAMYLKVNNFPQENKVYVIGGEGILEELRQAGY 127 (304)
Q Consensus 55 G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~--~~~i~~~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~g~ 127 (304)
..+++++|.. ....+..+.|++.|..+- .+. -.....+.+.|.+.+. +.+++.|...+...|-++|+
T Consensus 93 ~~~~~v~t~~--~~~~~~~~~l~~~~~~v~~~~~~-~~dl~~~l~~L~~~g~---~~vlveGG~~l~~~fl~~~L 161 (217)
T PRK05625 93 PAKTIVAVSE--AAPSEKVEELEKKGAEVIVAGGE-RVDLPDLLEDLYERGI---KRLMVEGGGTLIWSMFKEGL 161 (217)
T ss_pred CCCEEEEEcC--CCCHHHHHHHHHCCCEEEEeCCC-CcCHHHHHHHHHHCCC---CEEEEecCHHHHHHHHHCCC
Confidence 3566666642 233445566777777631 111 1122334455665554 47999999999998888774
No 381
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=36.55 E-value=80 Score=26.58 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=27.1
Q ss_pred HHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 45 RQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 45 ~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
.+.++.+...|.+++++|. ....|..+++.|.+.|+.
T Consensus 130 ~~~l~~~~~~~~~~vil~~-~~~~P~~IA~~L~~~G~~ 166 (210)
T COG2241 130 VELLRPLLENGRRLVILTP-DDFGPAEIAKLLTENGIG 166 (210)
T ss_pred HHHHHHHHhCCceEEEeCC-CCCCHHHHHHHHHhCCCC
Confidence 5666666677888888887 335678888888877775
No 382
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=36.46 E-value=54 Score=28.80 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=26.1
Q ss_pred cCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHH
Q 022007 36 KGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQ 71 (304)
Q Consensus 36 ~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~ 71 (304)
...+-.+...++++.++++|.+++.+|++..-+...
T Consensus 195 S~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~ 230 (292)
T PRK11337 195 SHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAK 230 (292)
T ss_pred eCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHH
Confidence 333445567899999999999999999865444443
No 383
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=36.04 E-value=1.2e+02 Score=21.05 Aligned_cols=66 Identities=17% Similarity=0.255 Sum_probs=37.3
Q ss_pred hhhHHHhhhc-cCEEEEeE-E--EEcCC-ccCccHH--------HHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCC
Q 022007 15 ANNITALFDS-VDAFLFDC-V--IWKGD-KLIDGVR--------QTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGV 81 (304)
Q Consensus 15 ~~~~~~~~~~-~k~i~fDi-t--L~~~~-~~~~~a~--------eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~ 81 (304)
..++.+++.+ -+.+++|+ . -+... ..+|||. +.+..+ ..+.++++..+ ++.........|+.+|+
T Consensus 4 ~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~~~~~~-~~~~~ivv~c~-~g~~s~~a~~~l~~~G~ 81 (96)
T cd01444 4 VDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDDWLGDL-DRDRPVVVYCY-HGNSSAQLAQALREAGF 81 (96)
T ss_pred HHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHHHHhhc-CCCCCEEEEeC-CCChHHHHHHHHHHcCC
Confidence 3455555655 56889999 3 34331 3455542 222322 24556766666 44555566777888887
Q ss_pred c
Q 022007 82 S 82 (304)
Q Consensus 82 ~ 82 (304)
+
T Consensus 82 ~ 82 (96)
T cd01444 82 T 82 (96)
T ss_pred c
Confidence 5
No 384
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=36.01 E-value=3.5e+02 Score=24.91 Aligned_cols=81 Identities=20% Similarity=0.336 Sum_probs=38.0
Q ss_pred EEEcCCccCcc-HHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhC-----------CCccCCCCeechH------HH
Q 022007 33 VIWKGDKLIDG-VRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSL-----------GVSVSEDEIFSSS------FA 94 (304)
Q Consensus 33 tL~~~~~~~~~-a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~l-----------G~~~~~~~i~~~~------~~ 94 (304)
+++|...-.+- +..|=+.+++.|+.++|-+- |+-++..+...+++. |++.++.-|++.. ..
T Consensus 45 v~~Dp~Sd~~~ya~~A~~Li~~d~V~~ifGc~-TSasRKaVlPvvE~~~~LL~Yp~~YEG~E~S~nviYtGa~PNQ~~~p 123 (363)
T PF13433_consen 45 VIYDPASDPSTYAEKAEKLIREDGVRAIFGCY-TSASRKAVLPVVERHNALLFYPTQYEGFECSPNVIYTGAAPNQQLLP 123 (363)
T ss_dssp EEE--TT-HHHHHHHHHHHHHHS---EEEE---SHHHHHHHHHHHHHCT-EEEE-S--------TTEEE-S--GGGTHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHhCCccEEEecc-hhhhHHHHHHHHHhcCceEEeccccccccCCCceEEcCCCchhhHHH
Confidence 55555443332 33444444678888777665 556778888777764 3333344444332 23
Q ss_pred HHHHHHhC-CCCCCCeEEEEcChh
Q 022007 95 AAMYLKVN-NFPQENKVYVIGGEG 117 (304)
Q Consensus 95 ~~~~l~~~-~~~~~~~v~~~g~~~ 117 (304)
+..|+..+ | .+++|++|++.
T Consensus 124 l~~~~~~~~G---~~r~~lvGSdY 144 (363)
T PF13433_consen 124 LIDYLLENFG---AKRFYLVGSDY 144 (363)
T ss_dssp HHHHHHHHS-----SEEEEEEESS
T ss_pred HHHHHHhccC---CceEEEecCCc
Confidence 45666553 3 15788888875
No 385
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=35.77 E-value=40 Score=27.28 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=27.9
Q ss_pred EEEcCCchhhHHHHHHcCCeEEEEccCCCCc
Q 022007 246 CMVGDRLDTDILFGQNAGCKTLLVLSGVTTQ 276 (304)
Q Consensus 246 ~~IGD~~~~Di~~a~~aG~~ti~V~~G~~~~ 276 (304)
+++.|+..+=++.|+++|++.+++.+-++..
T Consensus 137 lf~ed~~~na~~iAk~~~~~vilins~ynRk 167 (194)
T COG5663 137 LFFEDSHDNAGQIAKNAGIPVILINSPYNRK 167 (194)
T ss_pred ccccccCchHHHHHHhcCCcEEEecCccccc
Confidence 6899999999999999999999999887764
No 386
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=35.62 E-value=56 Score=29.69 Aligned_cols=34 Identities=12% Similarity=0.407 Sum_probs=30.0
Q ss_pred HHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 45 RQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 45 ~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
+..+++|+++|+.+.+.+ |......+.|+..|++
T Consensus 17 k~~I~eL~~~GheV~it~----R~~~~~~~LL~~yg~~ 50 (335)
T PF04007_consen 17 KNIIRELEKRGHEVLITA----RDKDETEELLDLYGID 50 (335)
T ss_pred HHHHHHHHhCCCEEEEEE----eccchHHHHHHHcCCC
Confidence 688999999999997666 7788888999999998
No 387
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=34.94 E-value=75 Score=29.82 Aligned_cols=19 Identities=21% Similarity=0.343 Sum_probs=12.1
Q ss_pred cCccHHHHHHHHHHCCCcE
Q 022007 40 LIDGVRQTLDVLRSKGKKL 58 (304)
Q Consensus 40 ~~~~a~eal~~L~~~G~~~ 58 (304)
+.+.+.+|+++|++.|+++
T Consensus 230 it~~a~~Al~~L~~aGI~l 248 (417)
T TIGR03820 230 ITASSKKALAKLADAGIPL 248 (417)
T ss_pred ChHHHHHHHHHHHHcCCEE
Confidence 4555666666666666664
No 388
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=34.85 E-value=3.5e+02 Score=24.89 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=30.6
Q ss_pred hccCEEEEeE----EEE--c---CCccCc--------cHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHH
Q 022007 23 DSVDAFLFDC----VIW--K---GDKLID--------GVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKF 76 (304)
Q Consensus 23 ~~~k~i~fDi----tL~--~---~~~~~~--------~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l 76 (304)
...+.++||. |+- . -..+-+ .-...|..++++|+++ +||..+..+....+.+
T Consensus 22 g~~d~l~~d~LaE~tma~~~~~~~~~p~~gY~~~~~~~L~~~L~~~~~~gIkv--I~NaGg~np~~~a~~v 90 (362)
T PF07287_consen 22 GDVDYLVGDYLAERTMAILARAKRKDPTKGYAPDFVRDLRPLLPAAAEKGIKV--ITNAGGLNPAGCADIV 90 (362)
T ss_pred CCCCEEEEecHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhCCCCE--EEeCCCCCHHHHHHHH
Confidence 4789999999 432 1 111111 1235556666788885 6666667776655543
No 389
>COG1985 RibD Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]
Probab=34.66 E-value=2.1e+02 Score=24.17 Aligned_cols=64 Identities=25% Similarity=0.256 Sum_probs=40.6
Q ss_pred CcEEEEeCCCCcCHHHHHHHHHhCCCcc--CCCCeechHHHHHHHHHhCCCCCCCeEEEEcChhHHHHHHHcCC
Q 022007 56 KKLIFVTNNSRRSRRQYAHKFHSLGVSV--SEDEIFSSSFAAAMYLKVNNFPQENKVYVIGGEGILEELRQAGY 127 (304)
Q Consensus 56 ~~~~i~Tn~s~r~~~~~~~~l~~lG~~~--~~~~i~~~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~g~ 127 (304)
.+++++|.+. .+..+.+++.|..+ ....-+ ....+.+.|.++++ +.+++.|...+...+-+.|+
T Consensus 98 ~p~~v~~~~~----~~~~~~~~~~g~~~i~~~~~~v-dl~~~l~~L~~~~i---~~vlvEGG~~L~~s~l~~gl 163 (218)
T COG1985 98 APTIVVTTEP----EEKLRELKEAGVEVILLPDGRV-DLAALLEELAERGI---NSVLVEGGATLNGSFLEAGL 163 (218)
T ss_pred CcEEEEecCc----hhhhhHHHhCCCEEEEcCCCcc-CHHHHHHHHHhCCC---cEEEEccCHHHHHHHHHcCC
Confidence 4777777732 66667777777762 111111 12334456776665 47999999999988888773
No 390
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=34.66 E-value=55 Score=32.32 Aligned_cols=53 Identities=15% Similarity=0.323 Sum_probs=31.6
Q ss_pred HHHhhhccCEEEEeE-EEEcCCcc-CccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHH
Q 022007 18 ITALFDSVDAFLFDC-VIWKGDKL-IDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYA 73 (304)
Q Consensus 18 ~~~~~~~~k~i~fDi-tL~~~~~~-~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~ 73 (304)
+.+.+.+++++++|= -.+.+... -..-.+.++.+.++|+++++.|| +++.++.
T Consensus 371 f~~~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd---~~P~eL~ 425 (617)
T PRK14086 371 FRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSD---RPPKQLV 425 (617)
T ss_pred HHHHhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecC---CChHhhh
Confidence 333445566666665 22222221 12234788888999999999888 6665543
No 391
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=34.49 E-value=3.4e+02 Score=24.34 Aligned_cols=87 Identities=17% Similarity=0.287 Sum_probs=50.0
Q ss_pred CccHHHHHHHHHHCCCc-EEEEeCCCCc-C----HHHHHHHHHhCCCccCCCCee------chHHH-HHHHHHhCCCCCC
Q 022007 41 IDGVRQTLDVLRSKGKK-LIFVTNNSRR-S----RRQYAHKFHSLGVSVSEDEIF------SSSFA-AAMYLKVNNFPQE 107 (304)
Q Consensus 41 ~~~a~eal~~L~~~G~~-~~i~Tn~s~r-~----~~~~~~~l~~lG~~~~~~~i~------~~~~~-~~~~l~~~~~~~~ 107 (304)
..++.++.+.|.++|++ +.++++.... + .+.+.+.+++.|++.....+. .++.. +..++.... . .
T Consensus 160 ~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~i~~~~~~~~~g~~~~~~ll~~~~-~-~ 237 (333)
T COG1609 160 FAGAYLATEHLIELGHRRIAFIGGPLDSSASRERLEGYRAALREAGLPINPEWIVEGDFSEESGYEAAERLLARGE-P-R 237 (333)
T ss_pred HHHHHHHHHHHHHCCCceEEEEeCCCccccHhHHHHHHHHHHHHCCCCCCcceEEecCCChHHHHHHHHHHHhcCC-C-C
Confidence 44678999999999876 8888885312 2 245667778888875222222 22222 223443221 1 0
Q ss_pred CeEEEEcChh----HHHHHHHcCCcc
Q 022007 108 NKVYVIGGEG----ILEELRQAGYTG 129 (304)
Q Consensus 108 ~~v~~~g~~~----~~~~l~~~g~~~ 129 (304)
....+...+. ....+.+.|+.+
T Consensus 238 ptAif~~nD~~Alg~l~~~~~~g~~v 263 (333)
T COG1609 238 PTAIFCANDLMALGALRALRELGLRV 263 (333)
T ss_pred CcEEEEcCcHHHHHHHHHHHHcCCCC
Confidence 2355555553 456788888773
No 392
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=34.42 E-value=86 Score=27.20 Aligned_cols=37 Identities=16% Similarity=-0.007 Sum_probs=27.1
Q ss_pred EEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHH
Q 022007 34 IWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRR 70 (304)
Q Consensus 34 L~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~ 70 (304)
......--|...++++.++++|.+++.+|++..-+..
T Consensus 124 ~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~ 160 (257)
T cd05007 124 GIAASGRTPYVLGALRYARARGALTIGIACNPGSPLL 160 (257)
T ss_pred EEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhH
Confidence 3444445566899999999999999999986544433
No 393
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=34.25 E-value=83 Score=24.72 Aligned_cols=69 Identities=13% Similarity=0.031 Sum_probs=39.1
Q ss_pred EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHH---HHHHHHHhCCCc-cC--CCCeechHHHHHHHHHhCCCC
Q 022007 33 VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRR---QYAHKFHSLGVS-VS--EDEIFSSSFAAAMYLKVNNFP 105 (304)
Q Consensus 33 tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~---~~~~~l~~lG~~-~~--~~~i~~~~~~~~~~l~~~~~~ 105 (304)
|++.+....| -|+++...+....++.+|.-+..... .+.+.|++.|.+ +. .-.++.+.. ...+++.|+.
T Consensus 43 Vi~~g~~~tp--~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d--~~~l~~~G~~ 117 (143)
T COG2185 43 VINLGLFQTP--EEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGVIPPGD--YQELKEMGVD 117 (143)
T ss_pred EEecCCcCCH--HHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCccCchh--HHHHHHhCcc
Confidence 4444433333 67777777777777777775555544 444567777776 22 233444433 2356666654
No 394
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=33.98 E-value=56 Score=25.20 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=7.3
Q ss_pred HHHHHHHHHCCCcEEEEe
Q 022007 45 RQTLDVLRSKGKKLIFVT 62 (304)
Q Consensus 45 ~eal~~L~~~G~~~~i~T 62 (304)
.++++..|++|..++-+|
T Consensus 120 i~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 120 IEAAEEAKERGMKVIALT 137 (138)
T ss_dssp HHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 444444444444444333
No 395
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=33.94 E-value=34 Score=29.02 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=27.0
Q ss_pred CCCCCcEEEEcCCchhhHH-HHHHcCCeEEEEccCCCC
Q 022007 239 QIASSRMCMVGDRLDTDIL-FGQNAGCKTLLVLSGVTT 275 (304)
Q Consensus 239 g~~~~~~~~IGD~~~~Di~-~a~~aG~~ti~V~~G~~~ 275 (304)
|+.-++.+++||+ .+|+= ..+..+.+.+....|+.-
T Consensus 179 gv~yer~iYvGDG-~nD~CP~l~Lr~~D~ampRkgfpl 215 (256)
T KOG3120|consen 179 GVRYERLIYVGDG-ANDFCPVLRLRACDVAMPRKGFPL 215 (256)
T ss_pred CCceeeEEEEcCC-CCCcCcchhcccCceecccCCCch
Confidence 7788899999999 99974 445556677766777644
No 396
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=33.94 E-value=39 Score=30.71 Aligned_cols=20 Identities=40% Similarity=0.607 Sum_probs=18.2
Q ss_pred HHHHHHHHHHCCCcEEEEeC
Q 022007 44 VRQTLDVLRSKGKKLIFVTN 63 (304)
Q Consensus 44 a~eal~~L~~~G~~~~i~Tn 63 (304)
...++++|++.|+.++++||
T Consensus 245 l~~fl~kL~~~GKklFLiTN 264 (510)
T KOG2470|consen 245 LLAFLRKLKDHGKKLFLITN 264 (510)
T ss_pred HHHHHHHHHHhcCcEEEEeC
Confidence 45788999999999999999
No 397
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=33.83 E-value=1.9e+02 Score=26.06 Aligned_cols=43 Identities=12% Similarity=0.289 Sum_probs=27.5
Q ss_pred hccCEEEEeE--E--EEcC-CccCc----cHHHHHHHH----HHCCCcEEEEeCCC
Q 022007 23 DSVDAFLFDC--V--IWKG-DKLID----GVRQTLDVL----RSKGKKLIFVTNNS 65 (304)
Q Consensus 23 ~~~k~i~fDi--t--L~~~-~~~~~----~a~eal~~L----~~~G~~~~i~Tn~s 65 (304)
..+++|++|. . .+.. ....+ +-.+.++.| ++++..++|+.||+
T Consensus 159 kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~NnG 214 (315)
T TIGR01370 159 QGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQNG 214 (315)
T ss_pred cCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEecCc
Confidence 4799999998 2 3321 11112 224566666 88888899999954
No 398
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=33.69 E-value=1.1e+02 Score=27.33 Aligned_cols=51 Identities=8% Similarity=0.112 Sum_probs=35.3
Q ss_pred chhhHHHhhhc-------cCEEEEeE---EE---Ec-CCccCccHHHHHHHHHHCCCcEEEEeCC
Q 022007 14 SANNITALFDS-------VDAFLFDC---VI---WK-GDKLIDGVRQTLDVLRSKGKKLIFVTNN 64 (304)
Q Consensus 14 ~~~~~~~~~~~-------~k~i~fDi---tL---~~-~~~~~~~a~eal~~L~~~G~~~~i~Tn~ 64 (304)
+.+++.+++++ .+.|.+|+ +- +. ...-+|+-++.+++|+++|.++++-.+.
T Consensus 28 s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P 92 (303)
T cd06592 28 NQETVLNYAQEIIDNGFPNGQIEIDDNWETCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHP 92 (303)
T ss_pred CHHHHHHHHHHHHHcCCCCCeEEeCCCccccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECC
Confidence 34445555553 56888887 21 12 2346889999999999999998887763
No 399
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=33.65 E-value=74 Score=28.65 Aligned_cols=70 Identities=20% Similarity=0.252 Sum_probs=43.9
Q ss_pred cccchhhHHHhhhccCEEEEeE-EEEcCCc-cCccHHHHHHHHHHCCC--cEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 11 ELLSANNITALFDSVDAFLFDC-VIWKGDK-LIDGVRQTLDVLRSKGK--KLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 11 ~~~~~~~~~~~~~~~k~i~fDi-tL~~~~~-~~~~a~eal~~L~~~G~--~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
..++.+++..+++.+.-.-+.- .+.-|.. ..++-.+.++.+++.+. .+.+.||++.. ....+.|.+.|++
T Consensus 43 ~~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li~~i~~~~~l~~i~itTNG~ll--~~~~~~L~~aGl~ 116 (329)
T PRK13361 43 QVLSLEELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLVARLGKLPGLEELSLTTNGSRL--ARFAAELADAGLK 116 (329)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECcCCCccccHHHHHHHHHhCCCCceEEEEeChhHH--HHHHHHHHHcCCC
Confidence 3467777777776443211111 3333333 34567789999988764 68899996533 3577888888876
No 400
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=33.64 E-value=88 Score=23.13 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=13.3
Q ss_pred chhhHHHhhhccCEEEEeE
Q 022007 14 SANNITALFDSVDAFLFDC 32 (304)
Q Consensus 14 ~~~~~~~~~~~~k~i~fDi 32 (304)
+.+.+.+++.+-+.+++|+
T Consensus 3 ~~~~l~~~l~~~~~~ivDv 21 (122)
T cd01448 3 SPDWLAEHLDDPDVRILDA 21 (122)
T ss_pred CHHHHHHHhCCCCeEEEEe
Confidence 4456666666666788998
No 401
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=33.62 E-value=78 Score=28.55 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=22.7
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCC
Q 022007 40 LIDGVRQTLDVLRSKGKKLIFVTNNS 65 (304)
Q Consensus 40 ~~~~a~eal~~L~~~G~~~~i~Tn~s 65 (304)
..|...+.++.++++|+.+.+.||++
T Consensus 143 L~p~l~eli~~~k~~Gi~~~L~TNG~ 168 (322)
T PRK13762 143 LYPYLPELIEEFHKRGFTTFLVTNGT 168 (322)
T ss_pred chhhHHHHHHHHHHcCCCEEEECCCC
Confidence 45667899999999999999999975
No 402
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=33.62 E-value=1e+02 Score=25.67 Aligned_cols=52 Identities=19% Similarity=0.121 Sum_probs=42.6
Q ss_pred ccCCCcHHHHHHHHHHcCCCCCcEEEEcCCch-hhHHHHHH-cCCeEEEEccCCCC
Q 022007 222 VVGKPSTFMMEILSKKFQIASSRMCMVGDRLD-TDILFGQN-AGCKTLLVLSGVTT 275 (304)
Q Consensus 222 ~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~-~Di~~a~~-aG~~ti~V~~G~~~ 275 (304)
..|| ...++..++.+.-+-+=+++-||=.. +|-+-.++ .|.+.+.|.||.+-
T Consensus 23 GSGK--TaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~C 76 (202)
T COG0378 23 GSGK--TALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGC 76 (202)
T ss_pred CcCH--HHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCcc
Confidence 3455 88899999998766677888999865 79999999 99999999999544
No 403
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=33.61 E-value=74 Score=22.60 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=31.2
Q ss_pred CEEEEeE--E-EEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 26 DAFLFDC--V-IWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 26 k~i~fDi--t-L~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
+.+++|+ + .++. ....--.+..+.++++|+.+.+. | .+ ..+.+.+...|+.
T Consensus 42 ~~lilD~~~v~~iDs-s~~~~L~~~~~~~~~~~~~~~l~-~---~~-~~~~~~l~~~g~~ 95 (107)
T cd07042 42 KVVILDLSAVNFIDS-TAAEALEELVKDLRKRGVELYLA-G---LN-PQVRELLERAGLL 95 (107)
T ss_pred eEEEEECCCCchhhH-HHHHHHHHHHHHHHHCCCEEEEe-c---CC-HHHHHHHHHcCcH
Confidence 6778888 3 2222 11111246677778889887554 5 23 3777788888875
No 404
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=33.26 E-value=1.3e+02 Score=25.98 Aligned_cols=56 Identities=25% Similarity=0.383 Sum_probs=37.8
Q ss_pred cCEEEEeE-------EE-Ec-CCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHH----HhCCCc
Q 022007 25 VDAFLFDC-------VI-WK-GDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKF----HSLGVS 82 (304)
Q Consensus 25 ~k~i~fDi-------tL-~~-~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l----~~lG~~ 82 (304)
.+++.+|. .. +. ...-+|..++.++.|+++|+++++.++... ++-..+.+ .++|++
T Consensus 40 ~d~~~lD~~~~~~~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v--~~w~~~~~~~~~~~~Gvd 108 (265)
T cd06589 40 LDGFVLDDDYTDGYGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI--REWWAEVVKKLLVSLGVD 108 (265)
T ss_pred ccEEEECcccccCCceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH--HHHHHHHHHHhhccCCCC
Confidence 66888888 22 12 234688899999999999999988887332 33333434 345766
No 405
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=33.26 E-value=1.1e+02 Score=27.44 Aligned_cols=43 Identities=14% Similarity=0.277 Sum_probs=27.3
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCC-CCcCHH---HHHHHHHhCCCc
Q 022007 40 LIDGVRQTLDVLRSKGKKLIFVTNN-SRRSRR---QYAHKFHSLGVS 82 (304)
Q Consensus 40 ~~~~a~eal~~L~~~G~~~~i~Tn~-s~r~~~---~~~~~l~~lG~~ 82 (304)
.+..+.++|+.|++.|+++.+.|-- +..... ++.+.+.++|++
T Consensus 147 ~f~~~l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~ 193 (318)
T TIGR03470 147 VFDRAVEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVD 193 (318)
T ss_pred cHHHHHHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCC
Confidence 4556789999999999987663311 113334 444566778875
No 406
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=33.20 E-value=77 Score=27.83 Aligned_cols=37 Identities=14% Similarity=0.298 Sum_probs=26.5
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHH
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAH 74 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~ 74 (304)
.+--+...++++.++++|.+++.+|++..-+...+.+
T Consensus 187 sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad 223 (281)
T COG1737 187 SGYTREIVEAAELAKERGAKVIAITDSADSPLAKLAD 223 (281)
T ss_pred CCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhc
Confidence 3344456788889999999999999965555555444
No 407
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=33.06 E-value=73 Score=27.57 Aligned_cols=63 Identities=14% Similarity=0.230 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCC----chhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhhh
Q 022007 228 TFMMEILSKKFQIASSRMCMVGDR----LDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELLG 303 (304)
Q Consensus 228 ~~~~~~al~~lg~~~~~~~~IGD~----~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l~ 303 (304)
.+.=..+++.+++ ++++-=|| ...=+++|++.|++.+.|.+.. .. .+..++.+++|+.++|+
T Consensus 183 ~e~n~al~~~~~i---~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~-----~~------~~~~~~~~~~e~l~~l~ 248 (249)
T PF02571_consen 183 KELNRALFRQYGI---DVLVTKESGGSGFDEKIEAARELGIPVIVIKRPP-----EP------YGDPVVETIEELLDWLE 248 (249)
T ss_pred HHHHHHHHHHcCC---CEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCC-----CC------CCCcccCCHHHHHHHHh
Confidence 3455666777776 34443332 1234889999999999985532 11 34556799999999987
Q ss_pred C
Q 022007 304 Q 304 (304)
Q Consensus 304 ~ 304 (304)
+
T Consensus 249 ~ 249 (249)
T PF02571_consen 249 Q 249 (249)
T ss_pred C
Confidence 4
No 408
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=32.94 E-value=64 Score=29.22 Aligned_cols=34 Identities=18% Similarity=0.116 Sum_probs=26.0
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHH
Q 022007 40 LIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYA 73 (304)
Q Consensus 40 ~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~ 73 (304)
--+++.++++.++++|.+++.+||+..-+...+.
T Consensus 104 eT~e~i~al~~ak~~Ga~~I~IT~~~~S~L~~~a 137 (340)
T PRK11382 104 KTEEVIKALELGRACGALTAAFTKRADSPITSAA 137 (340)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhC
Confidence 3456789999999999999999996555544443
No 409
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=32.94 E-value=97 Score=22.02 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=34.4
Q ss_pred hhhHHHhhhcc--CEEEEeE-E--EEcCCccCccHH--------HHHHHHHH--CCCcEEEEeCCCCcCHHHHHHHHHhC
Q 022007 15 ANNITALFDSV--DAFLFDC-V--IWKGDKLIDGVR--------QTLDVLRS--KGKKLIFVTNNSRRSRRQYAHKFHSL 79 (304)
Q Consensus 15 ~~~~~~~~~~~--k~i~fDi-t--L~~~~~~~~~a~--------eal~~L~~--~G~~~~i~Tn~s~r~~~~~~~~l~~l 79 (304)
.+.+.+++..- +.+++|+ . =+... .+|||. +.+..+.+ .+.++++..+...| .......|.++
T Consensus 4 ~~~l~~~~~~~~~~~~iiDvR~~~e~~~~-hI~ga~~ip~~~~~~~~~~~~~~~~~~~vv~~c~~g~r-s~~~~~~l~~~ 81 (101)
T cd01528 4 VAELAEWLADEREEPVLIDVREPEELEIA-FLPGFLHLPMSEIPERSKELDSDNPDKDIVVLCHHGGR-SMQVAQWLLRQ 81 (101)
T ss_pred HHHHHHHHhcCCCCCEEEECCCHHHHhcC-cCCCCEecCHHHHHHHHHHhcccCCCCeEEEEeCCCch-HHHHHHHHHHc
Confidence 34556666543 5789999 2 12111 334432 33444443 35677666664333 34445566667
Q ss_pred CCc
Q 022007 80 GVS 82 (304)
Q Consensus 80 G~~ 82 (304)
|++
T Consensus 82 G~~ 84 (101)
T cd01528 82 GFE 84 (101)
T ss_pred CCc
Confidence 775
No 410
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=32.43 E-value=16 Score=24.81 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=28.1
Q ss_pred CCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcC
Q 022007 224 GKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAG 263 (304)
Q Consensus 224 gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG 263 (304)
.-|....++.+++.+.+++..+..|-++ ...|-..+.+|
T Consensus 25 ~apftaVlkfaAeeF~vp~~tsaiItnd-G~GInP~QTag 63 (76)
T PF03671_consen 25 EAPFTAVLKFAAEEFKVPPATSAIITND-GVGINPQQTAG 63 (76)
T ss_dssp TSBHHHHHHHHHHHTTS-SSSEEEEESS-S-EE-TTSBHH
T ss_pred CCchHHHHHHHHHHcCCCCceEEEEecC-Ccccccchhhh
Confidence 3466788999999999999999999877 66665555544
No 411
>COG1614 CdhC CO dehydrogenase/acetyl-CoA synthase beta subunit [Energy production and conversion]
Probab=32.40 E-value=23 Score=31.76 Aligned_cols=77 Identities=19% Similarity=0.259 Sum_probs=42.3
Q ss_pred CCCCCCCCCccc-cchhhHHHhhhccCEEEEeE----EEEcCCccCccHHHHHH-HHHHCCCcEEEEeCCCCcCHHHHHH
Q 022007 1 MSGQNGQAPAEL-LSANNITALFDSVDAFLFDC----VIWKGDKLIDGVRQTLD-VLRSKGKKLIFVTNNSRRSRRQYAH 74 (304)
Q Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~~~~k~i~fDi----tL~~~~~~~~~a~eal~-~L~~~G~~~~i~Tn~s~r~~~~~~~ 74 (304)
|+|||++--... -..-++ .-+.+-|.+=-|- |+|....+-...+++|- .|+++ |+|-+.-.+.+++.+
T Consensus 315 mAGq~sGGkQv~GF~Gisi-~Ym~SpKFlQ~DGGw~RvvW~PkeLKerv~~~IPedl~DK-----IATEeDa~t~~eL~~ 388 (470)
T COG1614 315 MAGQCSGGKQVPGFVGISI-SYMRSPKFLQADGGWERVVWLPKELKERVKDAIPEDLYDK-----IATEEDATTIDELRE 388 (470)
T ss_pred hccccCCCccccceeeeee-eeecCccceecCCCeeEEEEchHHHHHHHHHhCcHHHHhh-----hccccccccHHHHHH
Confidence 789987652111 111111 1223344444444 66654433333344442 24544 788877788888888
Q ss_pred HHHhCCCcc
Q 022007 75 KFHSLGVSV 83 (304)
Q Consensus 75 ~l~~lG~~~ 83 (304)
+|++.|.++
T Consensus 389 FLk~~~HPv 397 (470)
T COG1614 389 FLKEKGHPV 397 (470)
T ss_pred HHHhcCCch
Confidence 888888774
No 412
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=32.37 E-value=1.3e+02 Score=21.03 Aligned_cols=66 Identities=17% Similarity=0.311 Sum_probs=34.7
Q ss_pred hhhHHHhhhcc--CEEEEeE-E--EEcCCccCccHH-----HH---HHHHH-HCCCcEEEEeCCCCcCHHHHHHHHHhCC
Q 022007 15 ANNITALFDSV--DAFLFDC-V--IWKGDKLIDGVR-----QT---LDVLR-SKGKKLIFVTNNSRRSRRQYAHKFHSLG 80 (304)
Q Consensus 15 ~~~~~~~~~~~--k~i~fDi-t--L~~~~~~~~~a~-----ea---l~~L~-~~G~~~~i~Tn~s~r~~~~~~~~l~~lG 80 (304)
.+++.+++.+- ..+++|+ . -+.. ..+|||. +. ...+. .++.++++......| .......|+.+|
T Consensus 3 ~~~l~~~~~~~~~~~~liDvR~~~e~~~-ghipga~~ip~~~l~~~~~~~~~~~~~~iv~~c~~G~r-s~~aa~~L~~~G 80 (95)
T cd01534 3 AAELARWAAEGDRTVYRFDVRTPEEYEA-GHLPGFRHTPGGQLVQETDHFAPVRGARIVLADDDGVR-ADMTASWLAQMG 80 (95)
T ss_pred HHHHHHHHHcCCCCeEEEECCCHHHHHh-CCCCCcEeCCHHHHHHHHHHhcccCCCeEEEECCCCCh-HHHHHHHHHHcC
Confidence 45666777654 4678999 3 2211 2333332 11 12222 135566666654434 445666788888
Q ss_pred Cc
Q 022007 81 VS 82 (304)
Q Consensus 81 ~~ 82 (304)
++
T Consensus 81 ~~ 82 (95)
T cd01534 81 WE 82 (95)
T ss_pred CE
Confidence 86
No 413
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=32.35 E-value=1.8e+02 Score=23.19 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHcCCCce-EEEecCCC
Q 022007 166 NYYKLQYGTLCIRENPGCL-FIATNRDA 192 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~-~i~tn~~~ 192 (304)
.|+++.++++.|+++ |.+ +|+||+..
T Consensus 43 ~~pgv~e~L~~Lk~~-G~~l~I~TN~~~ 69 (166)
T TIGR01664 43 LYPEIPAKLQELDDE-GYKIVIFTNQSG 69 (166)
T ss_pred ecCCHHHHHHHHHHC-CCEEEEEeCCcc
Confidence 478999999999887 664 78899765
No 414
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=32.21 E-value=3e+02 Score=22.91 Aligned_cols=105 Identities=17% Similarity=0.183 Sum_probs=58.4
Q ss_pred cchhhHHHhhhccCEEEEeE-EEEcCCc-c---------------------CccHHHHHHHHHHCCCcEEEEeCCCCcCH
Q 022007 13 LSANNITALFDSVDAFLFDC-VIWKGDK-L---------------------IDGVRQTLDVLRSKGKKLIFVTNNSRRSR 69 (304)
Q Consensus 13 ~~~~~~~~~~~~~k~i~fDi-tL~~~~~-~---------------------~~~a~eal~~L~~~G~~~~i~Tn~s~r~~ 69 (304)
.+...+..+..+.++|+.=. |+...+. . +|.....+ + .+.+++++|.+ ...
T Consensus 28 ~~r~~~h~lRa~~DaIlvG~~Tv~~D~P~L~~r~~~~~~~P~rvVld~~~~~~~~~~~~---~-~~~~~~v~t~~--~~~ 101 (210)
T TIGR01508 28 EDLIRVHEIRAEVDAIMVGIGTVLADDPRLTVKKIKSDRNPVRVVVDSKLRVPLNARIL---N-KDAKTIIATSE--DEP 101 (210)
T ss_pred HHHHHHHHHHHHCCEEEECcCeEEecCCcccccCcccCCCCEEEEECCCCCCCCcchhh---c-CCCCEEEEEcC--CCC
Confidence 44556677777888888877 6653321 0 11111122 2 23355556632 223
Q ss_pred HHHHHHHHhCCCccC--CCCeechHHHHHHHHHhCCCCCCCeEEEEcChhHHHHHHHcCC
Q 022007 70 RQYAHKFHSLGVSVS--EDEIFSSSFAAAMYLKVNNFPQENKVYVIGGEGILEELRQAGY 127 (304)
Q Consensus 70 ~~~~~~l~~lG~~~~--~~~i~~~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~g~ 127 (304)
.+..+.|++.|+.+- .+.-+ ....+...|.+.+. +++++.|...+...|-++|+
T Consensus 102 ~~~~~~l~~~gv~vi~~~~~~~-dl~~~l~~L~~~g~---~~vlveGG~~l~~~fl~~~L 157 (210)
T TIGR01508 102 EEKVEELEDKGVEVVKFGEGRV-DLKKLLDILYDKGV---RRLMVEGGGTLIWSLFKENL 157 (210)
T ss_pred HHHHHHHHHCCCEEEEeCCCCc-CHHHHHHHHHHCCC---CEEEEeeCHHHHHHHHHCCC
Confidence 345567777777621 11111 22233445666555 47999999999988887774
No 415
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=31.87 E-value=68 Score=25.64 Aligned_cols=64 Identities=23% Similarity=0.264 Sum_probs=45.1
Q ss_pred hhhHHHhhhccCEEEEeE----EEEcCCccCccHHHHHHHHHHCCCcEEEE-eCCCCcCHHHHHHHHHhCCC
Q 022007 15 ANNITALFDSVDAFLFDC----VIWKGDKLIDGVRQTLDVLRSKGKKLIFV-TNNSRRSRRQYAHKFHSLGV 81 (304)
Q Consensus 15 ~~~~~~~~~~~k~i~fDi----tL~~~~~~~~~a~eal~~L~~~G~~~~i~-Tn~s~r~~~~~~~~l~~lG~ 81 (304)
...+.+++...|.|+|-+ |=--+...+||-.+-..+|+++|+-.++| |- -.+-.+..+-+.+|-
T Consensus 34 tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSV---nDpFv~~aW~k~~g~ 102 (171)
T KOG0541|consen 34 TVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSV---NDPFVMKAWAKSLGA 102 (171)
T ss_pred eEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEec---CcHHHHHHHHhhcCc
Confidence 567888889999999998 22235568999999999999999885444 43 244444444444543
No 416
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=31.70 E-value=55 Score=30.82 Aligned_cols=37 Identities=19% Similarity=0.408 Sum_probs=26.7
Q ss_pred HHHHHHHHHCCCcEEEEeCCCCcCHH----HHHHHHHh-CCCc
Q 022007 45 RQTLDVLRSKGKKLIFVTNNSRRSRR----QYAHKFHS-LGVS 82 (304)
Q Consensus 45 ~eal~~L~~~G~~~~i~Tn~s~r~~~----~~~~~l~~-lG~~ 82 (304)
.+.+++|++.|+|++++-| |.+|.. ++.+.|++ .+.+
T Consensus 170 ervI~ELk~igKPFvillN-s~~P~s~et~~L~~eL~ekY~vp 211 (492)
T PF09547_consen 170 ERVIEELKEIGKPFVILLN-STKPYSEETQELAEELEEKYDVP 211 (492)
T ss_pred HHHHHHHHHhCCCEEEEEe-CCCCCCHHHHHHHHHHHHHhCCc
Confidence 4889999999999999999 556543 34444543 5665
No 417
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=31.53 E-value=1.5e+02 Score=23.42 Aligned_cols=72 Identities=13% Similarity=0.095 Sum_probs=42.3
Q ss_pred HHHhhhccCEEEEeE----EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcC--HHHHHHHHHh-CCCccCCCCeec
Q 022007 18 ITALFDSVDAFLFDC----VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRS--RRQYAHKFHS-LGVSVSEDEIFS 90 (304)
Q Consensus 18 ~~~~~~~~k~i~fDi----tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~--~~~~~~~l~~-lG~~~~~~~i~~ 90 (304)
+......-.+.+-|+ -+.+.-...|+|.+++++|.+. +.+.++|-.+..+ .+.-.+.|.+ +.| ++.++++-
T Consensus 43 ik~yv~~~~g~i~~il~ep~fFRnL~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPF-i~~qn~vf 120 (180)
T COG4502 43 IKNYVKPECGKIYDILKEPHFFRNLGVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPF-ISYQNIVF 120 (180)
T ss_pred hhhccCccCCeeeeeccCcchhhhcCccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCC-CChhhEEE
Confidence 333444445566666 4556667899999999999864 7788888743332 2333344444 333 44444443
Q ss_pred h
Q 022007 91 S 91 (304)
Q Consensus 91 ~ 91 (304)
+
T Consensus 121 C 121 (180)
T COG4502 121 C 121 (180)
T ss_pred e
Confidence 3
No 418
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=31.52 E-value=69 Score=22.49 Aligned_cols=45 Identities=11% Similarity=0.182 Sum_probs=24.8
Q ss_pred ccCccHHHHHHHHHHCCCcE-EEEeCCCCcCHHHHHHHHHhCCCcc
Q 022007 39 KLIDGVRQTLDVLRSKGKKL-IFVTNNSRRSRRQYAHKFHSLGVSV 83 (304)
Q Consensus 39 ~~~~~a~eal~~L~~~G~~~-~i~Tn~s~r~~~~~~~~l~~lG~~~ 83 (304)
..+-|..+.++.+++....+ ++.+|.+.++...+...-+..++++
T Consensus 8 Klv~G~~~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv 53 (82)
T PRK13601 8 KRVVGAKQTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKI 53 (82)
T ss_pred cEEEchHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCE
Confidence 45668889999988655554 4455533333333333334445543
No 419
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=31.29 E-value=86 Score=24.19 Aligned_cols=36 Identities=11% Similarity=0.274 Sum_probs=18.6
Q ss_pred HHHHHHHHHCCC-cEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 45 RQTLDVLRSKGK-KLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 45 ~eal~~L~~~G~-~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
.++++.+..++. .++++|+. .....+.+.+++.|..
T Consensus 89 ~d~~~~~~~~~~d~ivLvSgD--~Df~~~i~~lr~~G~~ 125 (149)
T cd06167 89 IDALELAYKRRIDTIVLVSGD--SDFVPLVERLRELGKR 125 (149)
T ss_pred HHHHHHhhhcCCCEEEEEECC--ccHHHHHHHHHHcCCE
Confidence 355555555433 34555553 2444555566666665
No 420
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=31.21 E-value=1.3e+02 Score=22.27 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHCCCcEEEEe-CCCCcCHHHHHHHHHhCCCc
Q 022007 43 GVRQTLDVLRSKGKKLIFVT-NNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 43 ~a~eal~~L~~~G~~~~i~T-n~s~r~~~~~~~~l~~lG~~ 82 (304)
..++|++.|+++|+.+-+.- .....+.+++...++.+|.+
T Consensus 11 t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~~g~~ 51 (114)
T TIGR00014 11 KSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAKLGLT 51 (114)
T ss_pred HHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHHcCCc
Confidence 36899999999999975543 34567889999999998864
No 421
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=31.03 E-value=1e+02 Score=27.62 Aligned_cols=57 Identities=12% Similarity=0.189 Sum_probs=36.5
Q ss_pred cCEEEEeE-E-------EEc-CCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCC
Q 022007 25 VDAFLFDC-V-------IWK-GDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGV 81 (304)
Q Consensus 25 ~k~i~fDi-t-------L~~-~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~ 81 (304)
.+.|.+|+ - -+. ....+|...+.+++|+++|+++++..+.........-+...+.|+
T Consensus 40 ~d~i~lD~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~ 105 (319)
T cd06591 40 LDVIVQDWFYWPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGY 105 (319)
T ss_pred ccEEEEechhhcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCE
Confidence 67888887 1 222 224688999999999999999887665332222233344444554
No 422
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=30.95 E-value=94 Score=27.44 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=42.4
Q ss_pred cccchhhHHHhhhccCEEEEeE-EEEcCCc-cCccHHHHHHHHHHCCC-cEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 11 ELLSANNITALFDSVDAFLFDC-VIWKGDK-LIDGVRQTLDVLRSKGK-KLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 11 ~~~~~~~~~~~~~~~k~i~fDi-tL~~~~~-~~~~a~eal~~L~~~G~-~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
...+.+.+..+++.....=..- .+..|.. .-+...+.++.+++.|+ .+.+.||++. ..+..+.|.+.|++
T Consensus 38 ~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~iv~~l~~~g~~~v~i~TNG~l--l~~~~~~l~~~g~~ 110 (302)
T TIGR02668 38 NELSPEEIERIVRVASEFGVRKVKITGGEPLLRKDLIEIIRRIKDYGIKDVSMTTNGIL--LEKLAKKLKEAGLD 110 (302)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEECcccccccCHHHHHHHHHhCCCceEEEEcCchH--HHHHHHHHHHCCCC
Confidence 3466677766655332111111 3333333 34567789999998888 7889999542 24566777777775
No 423
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=30.93 E-value=1.3e+02 Score=23.06 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=25.4
Q ss_pred ccCEEEEeE-EEEcCCccCccHHHHHHHHHHCCCcEE-EEeCCCCc
Q 022007 24 SVDAFLFDC-VIWKGDKLIDGVRQTLDVLRSKGKKLI-FVTNNSRR 67 (304)
Q Consensus 24 ~~k~i~fDi-tL~~~~~~~~~a~eal~~L~~~G~~~~-i~Tn~s~r 67 (304)
+++.++|=. | |....+.+...++++.|..+|+++. |.|++++.
T Consensus 50 ~~d~iilgs~t-~~~g~~p~~~~~fl~~l~~~~k~~avfgtgd~~~ 94 (140)
T TIGR01754 50 NYDLVFLGTWT-WERGRTPDEMKDFIAELGYKPSNVAIFGTGETQW 94 (140)
T ss_pred hCCEEEEEcCe-eCCCcCCHHHHHHHHHhcccCCEEEEEEcCCCCc
Confidence 455555544 4 3222334467889999887887764 44554444
No 424
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=30.85 E-value=99 Score=23.21 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=7.7
Q ss_pred ccHHHHHHHHHHCCC
Q 022007 42 DGVRQTLDVLRSKGK 56 (304)
Q Consensus 42 ~~a~eal~~L~~~G~ 56 (304)
+.+.+.++.|++.|.
T Consensus 65 ~~~~~~~~~L~~~~~ 79 (122)
T cd02071 65 TLFPEVIELLRELGA 79 (122)
T ss_pred HHHHHHHHHHHhcCC
Confidence 334555555555543
No 425
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=30.57 E-value=1.6e+02 Score=26.44 Aligned_cols=64 Identities=20% Similarity=0.188 Sum_probs=38.4
Q ss_pred cchhhHHHhhhccCEEEEeEEEEcCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCC
Q 022007 13 LSANNITALFDSVDAFLFDCVIWKGDK-LIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLG 80 (304)
Q Consensus 13 ~~~~~~~~~~~~~k~i~fDitL~~~~~-~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG 80 (304)
.+.+.+.+.++....-.+ ++.-|+. +.|...+.++.++++|+.+.+.||++-. .+. ...+...|
T Consensus 59 ls~ee~~~~i~e~g~~~V--~i~GGEPLL~pdl~eiv~~~~~~g~~v~l~TNG~ll-~~~-~~~l~~~~ 123 (318)
T TIGR03470 59 LSVEECLRAVDECGAPVV--SIPGGEPLLHPEIDEIVRGLVARKKFVYLCTNALLL-EKK-LDKFEPSP 123 (318)
T ss_pred CCHHHHHHHHHHcCCCEE--EEeCccccccccHHHHHHHHHHcCCeEEEecCceeh-HHH-HHHHHhCC
Confidence 455555555554322111 3333333 3567889999999999999999996543 333 34455444
No 426
>PRK06703 flavodoxin; Provisional
Probab=30.44 E-value=1.5e+02 Score=22.91 Aligned_cols=61 Identities=11% Similarity=0.214 Sum_probs=36.1
Q ss_pred hhccCEEEEeE-EEEcCCccCccHHHHHHHHHH---CCCcEEEE-eCCCC-----cCHHHHHHHHHhCCCcc
Q 022007 22 FDSVDAFLFDC-VIWKGDKLIDGVRQTLDVLRS---KGKKLIFV-TNNSR-----RSRRQYAHKFHSLGVSV 83 (304)
Q Consensus 22 ~~~~k~i~fDi-tL~~~~~~~~~a~eal~~L~~---~G~~~~i~-Tn~s~-----r~~~~~~~~l~~lG~~~ 83 (304)
+.++++|+|=. |. ....+.+.+..++..|++ +|+++.+. |++.+ +....+.+.|+++|+.+
T Consensus 46 l~~~d~viigspt~-~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~ 116 (151)
T PRK06703 46 LLAYDGIILGSYTW-GDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAEL 116 (151)
T ss_pred HhcCCcEEEEECCC-CCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEE
Confidence 45677766633 32 223344467888887763 46777665 45443 22344777888888874
No 427
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=30.33 E-value=75 Score=28.29 Aligned_cols=37 Identities=19% Similarity=0.068 Sum_probs=27.4
Q ss_pred EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCH
Q 022007 33 VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSR 69 (304)
Q Consensus 33 tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~ 69 (304)
+......--|...++++.++++|.+++.+||+..-+.
T Consensus 136 I~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~L 172 (299)
T PRK05441 136 VGIAASGRTPYVIGALEYARERGALTIGISCNPGSPL 172 (299)
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChh
Confidence 3344444566689999999999999999998654433
No 428
>PRK02947 hypothetical protein; Provisional
Probab=30.32 E-value=80 Score=27.19 Aligned_cols=32 Identities=16% Similarity=0.038 Sum_probs=24.5
Q ss_pred EEcCCccCccHHHHHHHHHHCCCcEEEEeCCC
Q 022007 34 IWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNS 65 (304)
Q Consensus 34 L~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s 65 (304)
+.....--+...++++.++++|.+++.+|++.
T Consensus 112 ~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~ 143 (246)
T PRK02947 112 VVSNSGRNPVPIEMALEAKERGAKVIAVTSLA 143 (246)
T ss_pred EEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 34444455667899999999999999999854
No 429
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=30.23 E-value=75 Score=26.29 Aligned_cols=44 Identities=23% Similarity=0.388 Sum_probs=28.2
Q ss_pred ccCccHHHHHHHHHHCCCcEEEE-----eCCCCcCHHHHHHHHHhCCCccC
Q 022007 39 KLIDGVRQTLDVLRSKGKKLIFV-----TNNSRRSRRQYAHKFHSLGVSVS 84 (304)
Q Consensus 39 ~~~~~a~eal~~L~~~G~~~~i~-----Tn~s~r~~~~~~~~l~~lG~~~~ 84 (304)
...++..+.|++|+++|++++++ |+ |+|-... ...|+.+|-+++
T Consensus 37 ~~~~~~l~~i~~lk~kg~~la~vGdvvGtG-SSRKSa~-NSvlW~~G~diP 85 (204)
T PF06434_consen 37 NRRPGPLEQIEELKEKGHPLAYVGDVVGTG-SSRKSAT-NSVLWHMGEDIP 85 (204)
T ss_dssp S-BTTSHHHHHHHHTTSS-EEEEEEEEEES----THHH-HHHHHHHSEEET
T ss_pred cccccHHHHHHHHHHcCCcEEEecCccccC-cccchhh-hhhhhhccCCCC
Confidence 34667899999999999998655 56 4444332 233888887765
No 430
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=30.06 E-value=3.3e+02 Score=23.30 Aligned_cols=31 Identities=16% Similarity=0.136 Sum_probs=24.3
Q ss_pred EEEEeCCCCcCHHHHHHHHHhCCCccCCCCeech
Q 022007 58 LIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSS 91 (304)
Q Consensus 58 ~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~ 91 (304)
.++.|| -......+.|+.||+.-+++.|+..
T Consensus 117 k~~FTN---a~k~HA~r~Lk~LGieDcFegii~~ 147 (244)
T KOG3109|consen 117 KWIFTN---AYKVHAIRILKKLGIEDCFEGIICF 147 (244)
T ss_pred EEEecC---CcHHHHHHHHHHhChHHhccceeEe
Confidence 678899 5677778889999998777776643
No 431
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=29.93 E-value=4e+02 Score=25.90 Aligned_cols=91 Identities=12% Similarity=0.100 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccCCCCCccccChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCcE
Q 022007 166 NYYKLQYGTLCIRENPGCLFIATNRDAVGHLTDLQEWPGAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRM 245 (304)
Q Consensus 166 ~~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~~ 245 (304)
+..++..++...+..++...+++.+.. . . -...+...++.+...+.--+++=.+..++.+.- ..--
T Consensus 82 s~~Dil~al~~a~~~~~~ia~vg~~~~-~--------~----~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~-~G~~ 147 (526)
T TIGR02329 82 TGFDVMQALARARRIASSIGVVTHQDT-P--------P----ALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRA-RGIG 147 (526)
T ss_pred ChhhHHHHHHHHHhcCCcEEEEecCcc-c--------H----HHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH-CCCC
Confidence 345555666555554344455555433 1 1 134555666665533332334334444444321 2235
Q ss_pred EEEcCCchhhHHHHHHcCCeEEEEccC
Q 022007 246 CMVGDRLDTDILFGQNAGCKTLLVLSG 272 (304)
Q Consensus 246 ~~IGD~~~~Di~~a~~aG~~ti~V~~G 272 (304)
++|||.+. ...|+++||.++++.+|
T Consensus 148 ~viG~~~~--~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 148 AVVGAGLI--TDLAEQAGLHGVFLYSA 172 (526)
T ss_pred EEECChHH--HHHHHHcCCceEEEecH
Confidence 68899943 67899999999999876
No 432
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.78 E-value=1.5e+02 Score=26.53 Aligned_cols=57 Identities=19% Similarity=0.120 Sum_probs=37.8
Q ss_pred cCEEEEeE---E---------EEc-CCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCC
Q 022007 25 VDAFLFDC---V---------IWK-GDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGV 81 (304)
Q Consensus 25 ~k~i~fDi---t---------L~~-~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~ 81 (304)
.++|.+|+ . -+. ....+|..++.++.|+++|+++++..+.........-+.+.+.|.
T Consensus 40 ~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~g~ 109 (317)
T cd06598 40 LDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKAGA 109 (317)
T ss_pred ceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhCCC
Confidence 56778886 2 121 134788999999999999999988876433222233455566665
No 433
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=29.74 E-value=81 Score=28.08 Aligned_cols=38 Identities=13% Similarity=0.011 Sum_probs=27.4
Q ss_pred cCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHH
Q 022007 36 KGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYA 73 (304)
Q Consensus 36 ~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~ 73 (304)
....--+...++++.++++|.+++.+|++..-+...+.
T Consensus 97 S~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~la~~a 134 (321)
T PRK11543 97 SYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAA 134 (321)
T ss_pred eCCCCcHHHHHHHHHHHHcCCeEEEEECCCCChhHHhC
Confidence 33344556789999999999999999995544444433
No 434
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.46 E-value=1.7e+02 Score=20.88 Aligned_cols=30 Identities=10% Similarity=0.230 Sum_probs=18.2
Q ss_pred HHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHh
Q 022007 46 QTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHS 78 (304)
Q Consensus 46 eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~ 78 (304)
.+-+..++.|+|++++-+ ++...+.+.|.+
T Consensus 66 ~vk~~akk~~ip~~~~~~---~~~~~l~~~l~~ 95 (97)
T PF10087_consen 66 KVKKAAKKYGIPIIYSRS---RGVSSLERALER 95 (97)
T ss_pred HHHHHHHHcCCcEEEECC---CCHHHHHHHHHh
Confidence 444445667888877765 555566655543
No 435
>PRK05569 flavodoxin; Provisional
Probab=29.26 E-value=1.9e+02 Score=22.03 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=35.0
Q ss_pred hhccCEEEEeE-EEEcCCccCccHHHHHHHHHH---CCCcEEEEeCCCCc---CHHHHHHHHHhCCCcc
Q 022007 22 FDSVDAFLFDC-VIWKGDKLIDGVRQTLDVLRS---KGKKLIFVTNNSRR---SRRQYAHKFHSLGVSV 83 (304)
Q Consensus 22 ~~~~k~i~fDi-tL~~~~~~~~~a~eal~~L~~---~G~~~~i~Tn~s~r---~~~~~~~~l~~lG~~~ 83 (304)
+.++++|+|=. |.+.+..+.+....+++.|+. +|+++++++-.... ....+.+.|+..|+.+
T Consensus 46 ~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~ 114 (141)
T PRK05569 46 VLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNV 114 (141)
T ss_pred HhhCCEEEEECCCcCCCcCChHHHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeE
Confidence 44677777655 533332222456788887763 57776555532322 2345566677778764
No 436
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=29.14 E-value=1.5e+02 Score=24.96 Aligned_cols=66 Identities=26% Similarity=0.314 Sum_probs=39.3
Q ss_pred hhhHHHhhhccCEEEEeE-EE----E---cCCccCccHHHHHHHHHHCCCcEEE----EeC--CCCcCHHHHHHHHHhCC
Q 022007 15 ANNITALFDSVDAFLFDC-VI----W---KGDKLIDGVRQTLDVLRSKGKKLIF----VTN--NSRRSRRQYAHKFHSLG 80 (304)
Q Consensus 15 ~~~~~~~~~~~k~i~fDi-tL----~---~~~~~~~~a~eal~~L~~~G~~~~i----~Tn--~s~r~~~~~~~~l~~lG 80 (304)
.+.+.++++-.+.+++|+ .. | .+. -..-..+.++.|.+.|+++.+ +.+ .+....+.+.+++++++
T Consensus 80 ~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~-~~~~il~nl~~l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~l~ 158 (213)
T PRK10076 80 ASKLLPLAKLCDEVLFDLKIMDATQARDVVKM-NLPRVLENLRLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIPLG 158 (213)
T ss_pred HHHHHHHHHhcCEEEEeeccCCHHHHHHHHCC-CHHHHHHHHHHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHcC
Confidence 355677888899999999 33 1 121 122356888888889887543 333 12222345556666654
Q ss_pred C
Q 022007 81 V 81 (304)
Q Consensus 81 ~ 81 (304)
.
T Consensus 159 ~ 159 (213)
T PRK10076 159 I 159 (213)
T ss_pred C
Confidence 3
No 437
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=29.01 E-value=3.8e+02 Score=23.21 Aligned_cols=141 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHHHHHHHHhCCCCCCCeEEEEcChhH---HHHHHHc
Q 022007 49 DVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFAAAMYLKVNNFPQENKVYVIGGEGI---LEELRQA 125 (304)
Q Consensus 49 ~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~l~~~~~~~~~~v~~~g~~~~---~~~l~~~ 125 (304)
+.+++.|+.+++++.+.....+++.+.|.+...|- +.+.+...- ...+.+.
T Consensus 25 ~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDG--------------------------iI~~s~~~~~~~l~~~~~~ 78 (279)
T PF00532_consen 25 QEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDG--------------------------IILASSENDDEELRRLIKS 78 (279)
T ss_dssp HHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSE--------------------------EEEESSSCTCHHHHHHHHT
T ss_pred HHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCE--------------------------EEEecccCChHHHHHHHHc
Q ss_pred CCcccCCCCCcchhhhhccccccccCCCccEEEEecCCCCCHHHHHHHHHHHHcCCCce--EEEecCCCccCCCCCcccc
Q 022007 126 GYTGLGGPEDGEKRVQLKSNCLFEHDKNVGAVVVGLDPHINYYKLQYGTLCIRENPGCL--FIATNRDAVGHLTDLQEWP 203 (304)
Q Consensus 126 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~--~i~tn~~~~~~~~~~~~~~ 203 (304)
+++++ ...........++.|... .+.....+.++|.+++..+ ++.+.+..
T Consensus 79 ~iPvV------------~~~~~~~~~~~~~~V~~D-----~~~a~~~a~~~Li~~Gh~~~I~~i~~~~~----------- 130 (279)
T PF00532_consen 79 GIPVV------------LIDRYIDNPEGVPSVYID-----NYEAGYEATEYLIKKGHRRPIAFIGGPED----------- 130 (279)
T ss_dssp TSEEE------------EESS-SCTTCTSCEEEEE-----HHHHHHHHHHHHHHTTCCSTEEEEEESTT-----------
T ss_pred CCCEE------------EEEeccCCcccCCEEEEc-----chHHHHHHHHHHHhcccCCeEEEEecCcc-----------
Q ss_pred ChHHHHHHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHc
Q 022007 204 GAGCMVAAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNA 262 (304)
Q Consensus 204 ~~g~l~~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~a 262 (304)
....+-.-.+|+.+++..|++..+.+++-.+ .|.+.+.++
T Consensus 131 -----------------~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~~~~--~~~~~g~~~ 170 (279)
T PF00532_consen 131 -----------------SSTSRERLQGYRDALKEAGLPIDEEWIFEGD--FDYESGYEA 170 (279)
T ss_dssp -----------------THHHHHHHHHHHHHHHHTTSCEEEEEEEESS--SSHHHHHHH
T ss_pred -----------------hHHHHHHHHHHHHHHHHcCCCCCcccccccC--CCHHHHHHH
No 438
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=28.54 E-value=87 Score=27.79 Aligned_cols=31 Identities=23% Similarity=0.139 Sum_probs=24.2
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcC
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRS 68 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~ 68 (304)
..--|...++++.++++|.+++.+|++..-+
T Consensus 136 SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~ 166 (291)
T TIGR00274 136 SGRTPYVIAGLQYARSLGALTISIACNPKSA 166 (291)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 3345568899999999999999999865433
No 439
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=28.45 E-value=71 Score=27.43 Aligned_cols=53 Identities=13% Similarity=0.255 Sum_probs=32.5
Q ss_pred EEEEeE-EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 27 AFLFDC-VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 27 ~i~fDi-tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
.+=.|. +....+...||-..|=+.|.+.|+|.+++|...+. ...+.|++-||-
T Consensus 57 ~~~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~---k~kd~l~~~g~G 110 (276)
T PF01993_consen 57 EWDPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAPTK---KAKDALEEEGFG 110 (276)
T ss_dssp HH--SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGG---GGHHHHHHTT-E
T ss_pred hhCCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCCch---hhHHHHHhcCCc
Confidence 334555 44455677888777777788899999999983322 234677777765
No 440
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.33 E-value=70 Score=21.33 Aligned_cols=26 Identities=38% Similarity=0.410 Sum_probs=20.8
Q ss_pred HHHHHHHcCCCCCcEEEEcCCchhhHHHHHH
Q 022007 231 MEILSKKFQIASSRMCMVGDRLDTDILFGQN 261 (304)
Q Consensus 231 ~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~ 261 (304)
.+.+++++|+ ++++||. ..||+|.+.
T Consensus 7 VqQlLK~~G~----ivyfg~r-~~~iemm~~ 32 (68)
T COG4483 7 VQQLLKKFGI----IVYFGKR-LYDIEMMQI 32 (68)
T ss_pred HHHHHHHCCe----eeecCCH-HHHHHHHHH
Confidence 4567888875 8899999 899998763
No 441
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=28.24 E-value=57 Score=21.44 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=25.8
Q ss_pred HHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCcc
Q 022007 44 VRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSV 83 (304)
Q Consensus 44 a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~ 83 (304)
++++|+.+. .|-.+.+.+++. -+...+...+++.|+.+
T Consensus 16 ~~~~l~~l~-~g~~l~v~~d~~-~~~~~i~~~~~~~g~~~ 53 (69)
T cd00291 16 TKKALEKLK-SGEVLEVLLDDP-GAVEDIPAWAKETGHEV 53 (69)
T ss_pred HHHHHhcCC-CCCEEEEEecCC-cHHHHHHHHHHHcCCEE
Confidence 455555544 455666666633 47889999999999874
No 442
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=28.24 E-value=1.3e+02 Score=28.47 Aligned_cols=68 Identities=25% Similarity=0.257 Sum_probs=41.6
Q ss_pred cchhhHHHhhhccCEEE--EeE-EEEc-CCccC--ccHHHHHHHHHHC--CCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 13 LSANNITALFDSVDAFL--FDC-VIWK-GDKLI--DGVRQTLDVLRSK--GKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 13 ~~~~~~~~~~~~~k~i~--fDi-tL~~-~~~~~--~~a~eal~~L~~~--G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
++.+++.+.+.++...+ ++. ++-- |+... .-..+.++.+++. |+++.+.||+.. . .+..+.|.++|++
T Consensus 60 Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~-l-~e~i~~L~~~gvd 135 (442)
T TIGR01290 60 LTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLM-L-PEHVDRLVDLGVG 135 (442)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCC-C-HHHHHHHHHCCCC
Confidence 45555555555443221 133 5544 34333 2368999999987 899999999653 3 4455677777776
No 443
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=28.10 E-value=1.9e+02 Score=24.89 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=37.3
Q ss_pred ccCEEEEeE---EEEcCCc------cCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 24 SVDAFLFDC---VIWKGDK------LIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 24 ~~k~i~fDi---tL~~~~~------~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
.|+-+++.+ +|-..+. .+..-.+.|+++.+.|+++.+++++. ...+.+....+ |++
T Consensus 4 ~~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGG-ni~Rg~~~~~~--g~~ 68 (238)
T COG0528 4 KYMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGG-NIARGYIGAAA--GMD 68 (238)
T ss_pred ceEEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCC-HHHHhHHHHHc--CCc
Confidence 577888888 6654332 23334578888999999999999955 44444444332 776
No 444
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=28.02 E-value=70 Score=27.64 Aligned_cols=49 Identities=18% Similarity=0.106 Sum_probs=38.1
Q ss_pred cCCCcH----HHHHHHHHHcCCCCC--cEEEEcCCchhhHHHHHHcCCeEEEEcc
Q 022007 223 VGKPST----FMMEILSKKFQIASS--RMCMVGDRLDTDILFGQNAGCKTLLVLS 271 (304)
Q Consensus 223 ~gKP~~----~~~~~al~~lg~~~~--~~~~IGD~~~~Di~~a~~aG~~ti~V~~ 271 (304)
.-||+| +.|..-++.+|++|. ++-+|.|+=++-..+|--.|+-..+=.|
T Consensus 79 iiKPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGLGWEVWldGM 133 (279)
T cd00733 79 IIKPSPDNIQELYLESLEALGINPKEHDIRFVEDNWESPTLGAWGLGWEVWLDGM 133 (279)
T ss_pred EECCCCccHHHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEEEECCe
Confidence 346666 577788899999776 7999999988889999888876554333
No 445
>PRK08116 hypothetical protein; Validated
Probab=27.97 E-value=1.2e+02 Score=26.39 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=20.9
Q ss_pred HHHHHHHHCCCcEEEEeCCCCcCHHHHHHHH
Q 022007 46 QTLDVLRSKGKKLIFVTNNSRRSRRQYAHKF 76 (304)
Q Consensus 46 eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l 76 (304)
+.|+....+|.++++.|| .++.++.+.+
T Consensus 202 ~iin~r~~~~~~~IiTsN---~~~~eL~~~~ 229 (268)
T PRK08116 202 NIIDSRYRKGLPTIVTTN---LSLEELKNQY 229 (268)
T ss_pred HHHHHHHHCCCCEEEECC---CCHHHHHHHH
Confidence 566666678999999999 7787766553
No 446
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=27.93 E-value=1.5e+02 Score=26.54 Aligned_cols=45 Identities=7% Similarity=0.192 Sum_probs=30.2
Q ss_pred hHHHhhhccCEEEEeEEEEcCCccCccHHHHHHHHHHCCCcEEEEeC
Q 022007 17 NITALFDSVDAFLFDCVIWKGDKLIDGVRQTLDVLRSKGKKLIFVTN 63 (304)
Q Consensus 17 ~~~~~~~~~k~i~fDitL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn 63 (304)
-+..++...+++++. -+-.....+...++|+++.++|++|+++|-
T Consensus 217 ~l~~~~~~~~GlVl~--~~G~Gn~~~~~~~~l~~a~~~gipVV~~sr 261 (313)
T PF00710_consen 217 LLDAALAGAKGLVLE--GYGAGNVPPALLEALARAVERGIPVVVTSR 261 (313)
T ss_dssp HHHHHHTT-SEEEEE--EBTTTBSSHHHHHHHHHHHHTTSEEEEEES
T ss_pred HHHHHhccCCEEEEe--ccCCCCCCHHHHHHHHHHHhcCceEEEecc
Confidence 344444667777552 233233566678999999999999988886
No 447
>COG4558 ChuT ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=27.80 E-value=74 Score=28.12 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=29.1
Q ss_pred HHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCC
Q 022007 45 RQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGV 81 (304)
Q Consensus 45 ~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~ 81 (304)
.++|..|++.|++++.+. ...+.+.+..+++++|-
T Consensus 112 ~~vl~qLraagV~vv~v~--~~~~~~~i~~~Ir~vg~ 146 (300)
T COG4558 112 ATVLDQLRAAGVPVVTVP--EQPTLDGIGTKIRQVGQ 146 (300)
T ss_pred HHHHHHHHHcCCcEEEcC--CCCCHHHHHHHHHHHHH
Confidence 589999999999987777 56888998888887664
No 448
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=27.78 E-value=1.7e+02 Score=19.68 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=26.4
Q ss_pred EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCC
Q 022007 33 VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGV 81 (304)
Q Consensus 33 tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~ 81 (304)
++..+....+.|.+....|++.|+.+.+..+. ++.....+.....|+
T Consensus 6 i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~--~~~~~~~~~a~~~~~ 52 (91)
T cd00859 6 VVPLGEGALSEALELAEQLRDAGIKAEIDYGG--RKLKKQFKYADRSGA 52 (91)
T ss_pred EEEcChHHHHHHHHHHHHHHHCCCEEEEecCC--CCHHHHHHHHHHcCC
Confidence 33334445556778888899899887654431 344443333334444
No 449
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=27.65 E-value=1.4e+02 Score=27.43 Aligned_cols=70 Identities=26% Similarity=0.229 Sum_probs=42.0
Q ss_pred cccchhhHHHhhhccCEEEEeE-EEEcCCc-cCccHHHHHHHHHHC-CCc-EEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 11 ELLSANNITALFDSVDAFLFDC-VIWKGDK-LIDGVRQTLDVLRSK-GKK-LIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 11 ~~~~~~~~~~~~~~~k~i~fDi-tL~~~~~-~~~~a~eal~~L~~~-G~~-~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
..++.+.+..+++.+...-... ++.-|.. .-++..+.++.+++. |+. +.+.||++..+ ...+.|.+.|++
T Consensus 88 ~~ls~eei~~~i~~~~~~Gv~~I~~tGGEPllr~dl~eli~~l~~~~gi~~i~itTNG~lL~--~~~~~L~~aGld 161 (373)
T PLN02951 88 HLLSQDEIVRLAGLFVAAGVDKIRLTGGEPTLRKDIEDICLQLSSLKGLKTLAMTTNGITLS--RKLPRLKEAGLT 161 (373)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEECCCCcchhhHHHHHHHHHhcCCCceEEEeeCcchHH--HHHHHHHhCCCC
Confidence 4567777777666443211112 3333333 244567888888886 875 77888865432 345677777776
No 450
>PF13466 STAS_2: STAS domain
Probab=27.59 E-value=1.4e+02 Score=20.04 Aligned_cols=59 Identities=17% Similarity=0.252 Sum_probs=32.6
Q ss_pred HHHhhhccCEEEEeE---EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 18 ITALFDSVDAFLFDC---VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 18 ~~~~~~~~k~i~fDi---tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
+.+++..-+-+.+|+ .-.++.. +.=-..+.+.+++.|.++.+ +| ....+.+.++-+|++
T Consensus 19 l~~~~~~~~~v~lDls~v~~iDsag-l~lL~~~~~~~~~~g~~~~l-~~----~~~~~~~ll~~~gld 80 (80)
T PF13466_consen 19 LQALLASGRPVVLDLSGVEFIDSAG-LQLLLAAARRARARGRQLRL-TG----PSPALRRLLELLGLD 80 (80)
T ss_pred HHHHHcCCCeEEEECCCCCeecHHH-HHHHHHHHHHHHHCCCeEEE-Ec----CCHHHHHHHHHhCcC
Confidence 344444446778887 2223211 10013666667778888754 66 334466777777764
No 451
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=27.40 E-value=1.2e+02 Score=27.25 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=43.2
Q ss_pred cccchhhHHHhhhccCEEEEeE-EEEcCCc-cCccHHHHHHHHHH-CCC-cEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 11 ELLSANNITALFDSVDAFLFDC-VIWKGDK-LIDGVRQTLDVLRS-KGK-KLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 11 ~~~~~~~~~~~~~~~k~i~fDi-tL~~~~~-~~~~a~eal~~L~~-~G~-~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
..++.+.+..+++.....-..- +|.-|+. ..++..+.++.+++ .|+ .+.+.||++. ..+..+.|.+.|++
T Consensus 41 ~~ls~eei~~~i~~~~~~gv~~V~ltGGEPll~~~l~~li~~i~~~~gi~~v~itTNG~l--l~~~~~~L~~~gl~ 114 (334)
T TIGR02666 41 ELLTFEEIERLVRAFVGLGVRKVRLTGGEPLLRKDLVELVARLAALPGIEDIALTTNGLL--LARHAKDLKEAGLK 114 (334)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECccccccCCHHHHHHHHHhcCCCCeEEEEeCchh--HHHHHHHHHHcCCC
Confidence 3467777777666433211111 3333333 34567888888887 578 7889999543 23467778888875
No 452
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=27.37 E-value=30 Score=29.21 Aligned_cols=48 Identities=19% Similarity=0.334 Sum_probs=31.0
Q ss_pred hHHHhhhccCEEEEeE-EEEcCCc-cCccHHHHHHHHHHCCCcEEEEeCC
Q 022007 17 NITALFDSVDAFLFDC-VIWKGDK-LIDGVRQTLDVLRSKGKKLIFVTNN 64 (304)
Q Consensus 17 ~~~~~~~~~k~i~fDi-tL~~~~~-~~~~a~eal~~L~~~G~~~~i~Tn~ 64 (304)
.+.+-+..++.+++|= -.+.+.. ....-.+.++.++++|+++++.++.
T Consensus 90 ~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~ 139 (219)
T PF00308_consen 90 EFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDR 139 (219)
T ss_dssp HHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred hhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCC
Confidence 4445566778877776 3333322 2223357788888999999999983
No 453
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=27.35 E-value=72 Score=27.62 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=36.9
Q ss_pred cCCCcH----HHHHHHHHHcCCCCC--cEEEEcCCchhhHHHHHHcCCeEEE
Q 022007 223 VGKPST----FMMEILSKKFQIASS--RMCMVGDRLDTDILFGQNAGCKTLL 268 (304)
Q Consensus 223 ~gKP~~----~~~~~al~~lg~~~~--~~~~IGD~~~~Di~~a~~aG~~ti~ 268 (304)
.-||+| +.|..-++.+|++|. ++-+|.|+=++--.+|--.|+-..+
T Consensus 83 ilKPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEVWl 134 (283)
T PRK09348 83 ILKPSPDNIQELYLGSLEALGIDPLEHDIRFVEDNWESPTLGAWGLGWEVWL 134 (283)
T ss_pred EEcCCCccHHHHHHHHHHHhCCCccccceeEeecCCCCCcccccccceEEEE
Confidence 346666 577788899999876 7999999988888899888876554
No 454
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=27.27 E-value=1.5e+02 Score=21.53 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=22.5
Q ss_pred cCCccCccHHHHHHHHHHCCCcEEEEeCCC
Q 022007 36 KGDKLIDGVRQTLDVLRSKGKKLIFVTNNS 65 (304)
Q Consensus 36 ~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s 65 (304)
+.....-|..+.++.+++....++|++++.
T Consensus 13 ragkl~~G~~~v~kai~~gkaklViiA~D~ 42 (99)
T PRK01018 13 DTGKVILGSKRTIKAIKLGKAKLVIVASNC 42 (99)
T ss_pred HcCCEEEcHHHHHHHHHcCCceEEEEeCCC
Confidence 345677899999999997777777777653
No 455
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=27.23 E-value=70 Score=31.26 Aligned_cols=61 Identities=15% Similarity=0.324 Sum_probs=37.7
Q ss_pred cCEEEEeE--EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc--cCCCCeec
Q 022007 25 VDAFLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS--VSEDEIFS 90 (304)
Q Consensus 25 ~k~i~fDi--tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~--~~~~~i~~ 90 (304)
.+.+++|+ +-+-+......-.+..++++++|+++.++-- ...+.+.+++.|+. +..+.++.
T Consensus 494 ~~~vIlD~~~V~~iDsSg~~~L~~l~~~l~~~g~~l~l~~~-----~~~v~~~l~~~gl~~~~~~~~~f~ 558 (563)
T TIGR00815 494 LQVVILDMSAVPHLDTSGIHALEELRKELKARGIQLLLANP-----NKAVRSTLKRGGLVELIGEEHFFP 558 (563)
T ss_pred ceEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEecC-----ChHHHHHHHHCCchhhcCCcceeC
Confidence 37889999 3332222333235777778889988865542 45677888888875 33344443
No 456
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=27.13 E-value=1.9e+02 Score=26.99 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=35.1
Q ss_pred ccCEEEEeE-EEEcCCccCccHHH--------HHHHHHHCCCcEEEEeCCCCcCHHHHHHHHH
Q 022007 24 SVDAFLFDC-VIWKGDKLIDGVRQ--------TLDVLRSKGKKLIFVTNNSRRSRRQYAHKFH 77 (304)
Q Consensus 24 ~~k~i~fDi-tL~~~~~~~~~a~e--------al~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~ 77 (304)
+||+|++|- ++-++..-..++.+ +++.|+ .|-.++++||.+..+...+.+.+.
T Consensus 290 ~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~-pgG~l~~~s~~~~~~~~~f~~~i~ 351 (393)
T COG1092 290 KFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLA-PGGTLVTSSCSRHFSSDLFLEIIA 351 (393)
T ss_pred cccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcC-CCCEEEEEecCCccCHHHHHHHHH
Confidence 799999999 88877654444443 333333 344566888877778877666543
No 457
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=27.03 E-value=72 Score=27.48 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=26.0
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHH
Q 022007 38 DKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQ 71 (304)
Q Consensus 38 ~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~ 71 (304)
..--+...++++.++++|.+++.+|++..-+...
T Consensus 57 sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~ 90 (268)
T TIGR00393 57 SGESLELLNLIPHLKRLSHKIIAFTGSPNSSLAR 90 (268)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEEECCCCCcccc
Confidence 3445567899999999999999999965444443
No 458
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=26.79 E-value=2.6e+02 Score=25.32 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=40.1
Q ss_pred cchhhHHHhhhccCEEEEeEEEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHh
Q 022007 13 LSANNITALFDSVDAFLFDCVIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHS 78 (304)
Q Consensus 13 ~~~~~~~~~~~~~k~i~fDitL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~ 78 (304)
||.|.+ +++++-++|+- +.|+.=.+|.+..|.+.++.++|+.|....+..++-..+++
T Consensus 125 rS~E~i-~Ll~eADIVVT-------NPPFSLFrEyv~~Li~~~KkFlIIGN~NaiTYkeiFplik~ 182 (336)
T PF13651_consen 125 RSDECI-ELLKEADIVVT-------NPPFSLFREYVAQLIEYDKKFLIIGNINAITYKEIFPLIKE 182 (336)
T ss_pred CcHHHH-HHHhcCCEEEe-------CCCcHHHHHHHHHHHHhCCCEEEEeccccccHHHHHHHHhc
Confidence 444444 46676665532 34555578888888888899988888777777777666653
No 459
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=26.69 E-value=1.6e+02 Score=22.09 Aligned_cols=17 Identities=35% Similarity=0.431 Sum_probs=11.0
Q ss_pred hhhHHHhhhccCEEEEeE
Q 022007 15 ANNITALFDSVDAFLFDC 32 (304)
Q Consensus 15 ~~~~~~~~~~~k~i~fDi 32 (304)
.+.+.+.+. -+.+++|+
T Consensus 3 ~~el~~~l~-~~~~iiDv 19 (128)
T cd01520 3 AEDLLALRK-ADGPLIDV 19 (128)
T ss_pred HHHHHHHHh-cCCEEEEC
Confidence 345555665 35688998
No 460
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=26.62 E-value=49 Score=30.68 Aligned_cols=54 Identities=19% Similarity=0.248 Sum_probs=43.5
Q ss_pred cccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHH-HHcCCeEEEEccCCC
Q 022007 221 IVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFG-QNAGCKTLLVLSGVT 274 (304)
Q Consensus 221 ~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a-~~aG~~ti~V~~G~~ 274 (304)
...+++++...+.+++.++..-.++++|||++..||.-- +.-|++|++|..-..
T Consensus 283 e~~~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl~skk~~~wrt~lv~peL~ 337 (424)
T KOG2469|consen 283 EQGGVYSGGSLKTVETSMKVKGKDILYGGDHIWGDVLVSKKRRGWRTVLVAPELE 337 (424)
T ss_pred hhcccCCcchHHHHHHHhcccccceeecccceeeeEEecceecceEEEEEehhhh
Confidence 445667778888999999998899999999998898644 567999999965443
No 461
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=26.50 E-value=1.1e+02 Score=28.49 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=30.4
Q ss_pred cCccHHHHHHHHHHCCCcEEEE---eCCCCcCHHHHHHHHHhCCCc
Q 022007 40 LIDGVRQTLDVLRSKGKKLIFV---TNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 40 ~~~~a~eal~~L~~~G~~~~i~---Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
.+..+.++|+.|++.|+.+-+. |........++.+++.++|++
T Consensus 151 sf~~v~~~i~~l~~~gi~~~i~~vv~~~n~~~~~e~~~~~~~lg~~ 196 (412)
T PRK13745 151 SFVKVMKGINLLKKHGVEWNAMAVVNDFNADYPLDFYHFFKELDCH 196 (412)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEEEcCCccccHHHHHHHHHHcCCC
Confidence 3444678999999999886443 443334467788889999987
No 462
>COG3876 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.48 E-value=81 Score=28.27 Aligned_cols=108 Identities=16% Similarity=0.229 Sum_probs=65.0
Q ss_pred HHhhhccCEEEEeE--EEEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHH----HH-HHHHh-CCCc-cCCCCee
Q 022007 19 TALFDSVDAFLFDC--VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQ----YA-HKFHS-LGVS-VSEDEIF 89 (304)
Q Consensus 19 ~~~~~~~k~i~fDi--tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~----~~-~~l~~-lG~~-~~~~~i~ 89 (304)
.+++...|.++||+ +=.+.-..+---..|++.-++.|++++++----..--+. +. ...+. .|+- ++...-+
T Consensus 118 ~emle~~DV~vfDiQDvG~R~Ytyiytm~yameAs~e~~k~fiVLDRPNP~gG~~VeGplld~~y~sfvg~ypIP~~yGm 197 (409)
T COG3876 118 KEMLEDCDVFVFDIQDVGVRSYTYIYTMAYAMEASAENGKEFIVLDRPNPMGGNIVEGPLLDPRYKSFVGLYPIPYCYGM 197 (409)
T ss_pred HHHHhcCCEEEEechhccceehhHHHHHHHHHHHHHHcCCceEEeCCCCCCCCccccCCCCCccccccccccCcccccCC
Confidence 46778999999999 434444444434688888899999998775210000011 11 11222 4543 6666778
Q ss_pred chHHHHHHHHHhCCCCCCCeEEEEcChhHHHH--HHHcCCc
Q 022007 90 SSSFAAAMYLKVNNFPQENKVYVIGGEGILEE--LRQAGYT 128 (304)
Q Consensus 90 ~~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~--l~~~g~~ 128 (304)
|++..+.-|-++- ...+.+.++-..++.+. +.+.|+.
T Consensus 198 T~GElAllfn~ef--ai~a~vtVVpmkgWkR~m~f~dtgL~ 236 (409)
T COG3876 198 TPGELALLFNKEF--AINADVTVVPMKGWKRSMDFDDTGLI 236 (409)
T ss_pred CHHHHHHHhhhhc--CCCCceEEEecccccccccccccCce
Confidence 8888876554443 34577888888888654 3444543
No 463
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=26.25 E-value=4.1e+02 Score=22.67 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=53.5
Q ss_pred HHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHh-CCCccCCCCeechHHHHHHHHHhCCCCCCCeEEEEcChh------
Q 022007 45 RQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHS-LGVSVSEDEIFSSSFAAAMYLKVNNFPQENKVYVIGGEG------ 117 (304)
Q Consensus 45 ~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~-lG~~~~~~~i~~~~~~~~~~l~~~~~~~~~~v~~~g~~~------ 117 (304)
.++.+.|.+.|-.++++.-| +..-+.+.+++ .++++ +.-....+.-++..|. +++.++|...
T Consensus 65 ~~~a~~Le~~GAd~i~l~~N---T~H~~~d~iq~~~~iPl-----lhIidaTa~~ik~~g~---kkvgLLgT~~Tm~~~f 133 (230)
T COG1794 65 IDAAKKLERAGADFIVLPTN---TMHKVADDIQKAVGIPL-----LHIIDATAKAIKAAGA---KKVGLLGTRFTMEQGF 133 (230)
T ss_pred HHHHHHHHhcCCCEEEEeCC---cHHHHHHHHHHhcCCCe-----ehHHHHHHHHHHhcCC---ceeEEeeccchHHhHH
Confidence 47778888899886544432 57777777764 77773 2333455667776666 4788988842
Q ss_pred HHHHHHHcCCcccCCCC
Q 022007 118 ILEELRQAGYTGLGGPE 134 (304)
Q Consensus 118 ~~~~l~~~g~~~~~~~~ 134 (304)
++..|.+.|++++...+
T Consensus 134 Y~~~l~~~gievvvPdd 150 (230)
T COG1794 134 YRKRLEEKGIEVVVPDD 150 (230)
T ss_pred HHHHHHHCCceEecCCH
Confidence 46788999988775443
No 464
>COG1485 Predicted ATPase [General function prediction only]
Probab=26.24 E-value=1.7e+02 Score=26.84 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=35.6
Q ss_pred HHhhhccCEEEEeE-EEEc-CCccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHH
Q 022007 19 TALFDSVDAFLFDC-VIWK-GDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYA 73 (304)
Q Consensus 19 ~~~~~~~k~i~fDi-tL~~-~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~ 73 (304)
..+..+++.++||= .+-+ ++..+ ....++.|-++|+-++.-|| +.|+++-
T Consensus 125 ~~~~~~~~vLCfDEF~VtDI~DAMi--L~rL~~~Lf~~GV~lvaTSN---~~P~~LY 176 (367)
T COG1485 125 DELAAETRVLCFDEFEVTDIADAMI--LGRLLEALFARGVVLVATSN---TAPDNLY 176 (367)
T ss_pred HHHHhcCCEEEeeeeeecChHHHHH--HHHHHHHHHHCCcEEEEeCC---CChHHhc
Confidence 35677999999998 6654 22222 14778888999999887778 7776543
No 465
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=26.23 E-value=87 Score=22.79 Aligned_cols=69 Identities=14% Similarity=0.199 Sum_probs=36.3
Q ss_pred cchhhHHHhhhc--cCEEEEeE---EEEcCCccCccHH----HHHH--HHH--HCCCcEEEEeCCCC-cCHHHHHHHHHh
Q 022007 13 LSANNITALFDS--VDAFLFDC---VIWKGDKLIDGVR----QTLD--VLR--SKGKKLIFVTNNSR-RSRRQYAHKFHS 78 (304)
Q Consensus 13 ~~~~~~~~~~~~--~k~i~fDi---tL~~~~~~~~~a~----eal~--~L~--~~G~~~~i~Tn~s~-r~~~~~~~~l~~ 78 (304)
.+.+++.+.+.. -+.+++|+ --+.. ..+|||. ..+. .+. ..+.++++..++.. .........|++
T Consensus 10 ~s~~el~~~l~~~~~~~~iiDvR~~~e~~~-ghIpgA~~ip~~~l~~~~~~~i~~~~~vvvyc~~g~~~~s~~~a~~l~~ 88 (110)
T cd01521 10 TDCWDVAIALKNGKPDFVLVDVRSAEAYAR-GHVPGAINLPHREICENATAKLDKEKLFVVYCDGPGCNGATKAALKLAE 88 (110)
T ss_pred cCHHHHHHHHHcCCCCEEEEECCCHHHHhc-CCCCCCEeCCHHHhhhHhhhcCCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 355667777664 35889999 22322 2344432 2222 122 23455666655332 234555667788
Q ss_pred CCCc
Q 022007 79 LGVS 82 (304)
Q Consensus 79 lG~~ 82 (304)
+|++
T Consensus 89 ~G~~ 92 (110)
T cd01521 89 LGFP 92 (110)
T ss_pred cCCe
Confidence 8885
No 466
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=26.14 E-value=1.8e+02 Score=28.94 Aligned_cols=45 Identities=13% Similarity=0.284 Sum_probs=29.1
Q ss_pred EEEcCCccCcc-HHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 33 VIWKGDKLIDG-VRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 33 tL~~~~~~~~~-a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
||...+..++. +.++.+.||+.|...+++.+ ++.+ +.+ ++..|+|
T Consensus 551 viCssD~~Y~~~a~~~~~al~~ag~~~v~lAG---~p~~-~~~-~~~aGvd 596 (619)
T TIGR00642 551 VLCSSDKVYAQQGLEVAKALKAAGAKALYLAG---AFKE-FGD-DAAEAID 596 (619)
T ss_pred EEeCCCcchHHHHHHHHHHHHhCCCCEEEEeC---CCcc-hhh-HHhcCCc
Confidence 66766665553 56777777777777777777 4544 334 6666665
No 467
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=26.12 E-value=1.9e+02 Score=26.86 Aligned_cols=101 Identities=25% Similarity=0.209 Sum_probs=62.2
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCce-EEEecCCCccCCCCCccccChHHHHHHHHHhh---CC-------C-CcccCCCcH
Q 022007 161 LDPHINYYKLQYGTLCIRENPGCL-FIATNRDAVGHLTDLQEWPGAGCMVAAMCAST---EK-------E-PIVVGKPST 228 (304)
Q Consensus 161 ~~~~~~~~~~~~~l~~l~~~~~~~-~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~---~~-------~-~~~~gKP~~ 228 (304)
.+..+.|+.+..-+..+... |.+ ++.||....... . ...-.+...++.++ +. . ...++||..
T Consensus 100 ~dw~~l~~~vp~Klktl~~~-g~~l~iftnq~~i~r~-~----~~~~~f~~Ki~~i~anl~vPi~~~~A~~~~~yRKP~t 173 (422)
T KOG2134|consen 100 MDWRILFPEVPSKLKTLYQD-GIKLFIFTNQNGIARG-K----LELEEFKKKIKAIVANLGVPIQLLAAIIKGKYRKPST 173 (422)
T ss_pred ccceeeccccchhhhhhccC-CeEEEEEecccccccC-c----chHHHHHHHHHHHHHhcCCceEEeeeccCCcccCcch
Confidence 34556677777777777665 765 778998772211 1 11122333333332 11 1 246899999
Q ss_pred HHHHHHHHHcC----CCCCcEEEEcCC--------------chhhHHHHHHcCCeEE
Q 022007 229 FMMEILSKKFQ----IASSRMCMVGDR--------------LDTDILFGQNAGCKTL 267 (304)
Q Consensus 229 ~~~~~al~~lg----~~~~~~~~IGD~--------------~~~Di~~a~~aG~~ti 267 (304)
.|++...+.++ +.-..+.++||- =..|+..|.++|+...
T Consensus 174 GMwe~~~~~~nd~~~Isek~s~fvgdaagr~~~~~~~kkd~S~~D~~FAaN~gvkF~ 230 (422)
T KOG2134|consen 174 GMWEFLKRLENDSVEISEKASIFVGDAAGRPLDALRRKKDHSSADRKFAANAGVKFK 230 (422)
T ss_pred hHHHHHHHHhhccceeeechhhhhhhhccCccccccCcccccHHHHHHHHhcCCccC
Confidence 99999998764 333445577662 1569999999997653
No 468
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=26.09 E-value=63 Score=24.39 Aligned_cols=33 Identities=15% Similarity=0.348 Sum_probs=22.1
Q ss_pred HHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 44 VRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 44 a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
....-++|+++||.|.++|+ . .+.+.+++.|++
T Consensus 15 ~lala~~L~~rGh~V~~~~~---~---~~~~~v~~~Gl~ 47 (139)
T PF03033_consen 15 FLALARALRRRGHEVRLATP---P---DFRERVEAAGLE 47 (139)
T ss_dssp HHHHHHHHHHTT-EEEEEET---G---GGHHHHHHTT-E
T ss_pred HHHHHHHHhccCCeEEEeec---c---cceecccccCce
Confidence 34556778999999999998 2 244455778887
No 469
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=25.93 E-value=60 Score=24.14 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=20.7
Q ss_pred EEEcCCccCccHHHHHHHHHHCCCcEEEEeC
Q 022007 33 VIWKGDKLIDGVRQTLDVLRSKGKKLIFVTN 63 (304)
Q Consensus 33 tL~~~~~~~~~a~eal~~L~~~G~~~~i~Tn 63 (304)
+|.-++..+ |.++++.+++.|++++.+-+
T Consensus 5 vLIanrGei--a~r~~ra~r~~Gi~tv~v~s 33 (110)
T PF00289_consen 5 VLIANRGEI--AVRIIRALRELGIETVAVNS 33 (110)
T ss_dssp EEESS-HHH--HHHHHHHHHHTTSEEEEEEE
T ss_pred EEEECCCHH--HHHHHHHHHHhCCcceeccC
Confidence 444444444 88999999999999766555
No 470
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=25.82 E-value=2.4e+02 Score=23.92 Aligned_cols=41 Identities=22% Similarity=0.436 Sum_probs=33.2
Q ss_pred HHHHHHHHHHCCCcEEEEeCCCCc--CHHHHHHHHHhCCCccC
Q 022007 44 VRQTLDVLRSKGKKLIFVTNNSRR--SRRQYAHKFHSLGVSVS 84 (304)
Q Consensus 44 a~eal~~L~~~G~~~~i~Tn~s~r--~~~~~~~~l~~lG~~~~ 84 (304)
+.+..+.+++.|...+|+...+++ .+.++.++++++|+++.
T Consensus 65 ~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~ 107 (217)
T PF02593_consen 65 TYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVE 107 (217)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceee
Confidence 468888888899999998886666 45689999999998754
No 471
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=25.71 E-value=4.5e+02 Score=22.94 Aligned_cols=38 Identities=8% Similarity=-0.090 Sum_probs=23.8
Q ss_pred HHHHHHHcCCC-CCcEEEEcCCchhhHHHHHHcCCeEEEE
Q 022007 231 MEILSKKFQIA-SSRMCMVGDRLDTDILFGQNAGCKTLLV 269 (304)
Q Consensus 231 ~~~al~~lg~~-~~~~~~IGD~~~~Di~~a~~aG~~ti~V 269 (304)
.-.++...|+. |+++-++|.+ ..++...-.-++.|+-.
T Consensus 253 ~~~al~~~g~~vP~disv~gfd-~~~~~~~~~p~lttv~~ 291 (328)
T PRK11303 253 VLDVLLERPGELPSDLAIATFG-DNELLDFLPCPVNAVAQ 291 (328)
T ss_pred HHHHHHHcCCCCCCceEEEEeC-ChHHHhccCCCceEEec
Confidence 44556667764 7888888877 44544444446777655
No 472
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=25.48 E-value=1.1e+02 Score=27.17 Aligned_cols=35 Identities=14% Similarity=0.039 Sum_probs=25.7
Q ss_pred EEcCCccCccHHHHHHHHHHCCCcEEEEeCCCCcC
Q 022007 34 IWKGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRRS 68 (304)
Q Consensus 34 L~~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~ 68 (304)
......--|...++++.++++|.+++.+||+..-+
T Consensus 133 ~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~ 167 (296)
T PRK12570 133 GIAASGRTPYVIGALEYAKQIGATTIALSCNPDSP 167 (296)
T ss_pred EEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 34444445568899999999999999999865444
No 473
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=25.35 E-value=1e+02 Score=24.63 Aligned_cols=38 Identities=34% Similarity=0.467 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCCCc--CHHHHHHHHHhCCC
Q 022007 43 GVRQTLDVLRSKGKKLIFVTNNSRR--SRRQYAHKFHSLGV 81 (304)
Q Consensus 43 ~a~eal~~L~~~G~~~~i~Tn~s~r--~~~~~~~~l~~lG~ 81 (304)
||---++-|+ .|+|+++++|.+-. +..+++++|.+.|.
T Consensus 89 GaGS~letL~-l~KPlivVvNd~LMDNHQ~ELA~qL~~egy 128 (170)
T KOG3349|consen 89 GAGSCLETLR-LGKPLIVVVNDSLMDNHQLELAKQLAEEGY 128 (170)
T ss_pred CcchHHHHHH-cCCCEEEEeChHhhhhHHHHHHHHHHhcCc
Confidence 4555566655 68999999995543 24455666655554
No 474
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=25.17 E-value=80 Score=27.82 Aligned_cols=48 Identities=21% Similarity=0.362 Sum_probs=26.1
Q ss_pred chhhHHHHHHcCCeEEEEccCCCCccccCCCCCCCCCcEEECCHHHHHHhhh
Q 022007 252 LDTDILFGQNAGCKTLLVLSGVTTQSTLQDPSNNIQPDYYTNQVSDILELLG 303 (304)
Q Consensus 252 ~~~Di~~a~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~v~~~l~el~~~l~ 303 (304)
+..++.+++.+|++.+++.+|......-.. ..|.+-..+..+|.+.+.
T Consensus 87 l~~~L~~~~~~Gi~niL~l~GD~~~~g~~~----~~~~~~~~~~~~Li~~i~ 134 (287)
T PF02219_consen 87 LQSDLLGAHALGIRNILALTGDPPKGGDHF----AKPVFDFDYALDLIRLIR 134 (287)
T ss_dssp HHHHHHHHHHTT--EEEEESS-TSTTSSS--------TTS-SSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEecCCCCCCCccc----cCCCchhHHHHHHHHHHH
Confidence 467899999999999999999654221000 123322445666666543
No 475
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=25.16 E-value=1.3e+02 Score=27.19 Aligned_cols=45 Identities=18% Similarity=0.375 Sum_probs=24.5
Q ss_pred HHHHHHHHHCCCcEEEEe--CCCCcCHHHH---HHHHHhCCCccCCCCee
Q 022007 45 RQTLDVLRSKGKKLIFVT--NNSRRSRRQY---AHKFHSLGVSVSEDEIF 89 (304)
Q Consensus 45 ~eal~~L~~~G~~~~i~T--n~s~r~~~~~---~~~l~~lG~~~~~~~i~ 89 (304)
.+.++.|++.|++++++| |...-..+.. .+.|.+.|+.+.-..++
T Consensus 210 ~el~~~L~~~~~~~~~vsh~nh~~Ei~~~~~~ai~~L~~aGi~v~~qtvL 259 (331)
T TIGR00238 210 DELCELLASFELQLMLVTHINHCNEITEEFAEAMKKLRTVNVTLLNQSVL 259 (331)
T ss_pred HHHHHHHHhcCCcEEEEccCCChHhCCHHHHHHHHHHHHcCCEEEeecce
Confidence 477777777788877777 4211111222 23456678775443333
No 476
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=24.93 E-value=2e+02 Score=21.58 Aligned_cols=47 Identities=11% Similarity=0.202 Sum_probs=30.3
Q ss_pred cCCccCccHHHHHHHHHHCCCcEEEEeCCCCc-C-HHHHHHHHHhCCCc
Q 022007 36 KGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRR-S-RRQYAHKFHSLGVS 82 (304)
Q Consensus 36 ~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r-~-~~~~~~~l~~lG~~ 82 (304)
+.....-|..+.++.++.....++|++++.+. . ...+...-+..+++
T Consensus 23 ragkl~~G~~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip 71 (117)
T TIGR03677 23 ETGKIKKGTNEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIP 71 (117)
T ss_pred HcCCEeEcHHHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCC
Confidence 34567889999999999776777777775533 2 34444444445554
No 477
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=24.87 E-value=2.1e+02 Score=23.04 Aligned_cols=61 Identities=15% Similarity=0.073 Sum_probs=37.2
Q ss_pred HHHHHhhCCCCcccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcCCeEEEEccCC
Q 022007 210 AAMCASTEKEPIVVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAGCKTLLVLSGV 273 (304)
Q Consensus 210 ~~~~~~~~~~~~~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG~~ti~V~~G~ 273 (304)
..+...++.+...+.--+++=++.+++.+-- ..--++||+. .. ...|++.|++++++.+|.
T Consensus 93 ~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~-~G~~viVGg~-~~-~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 93 ESIEELLGVDIKIYPYDSEEEIEAAIKQAKA-EGVDVIVGGG-VV-CRLARKLGLPGVLIESGE 153 (176)
T ss_dssp HHHHHHHT-EEEEEEESSHHHHHHHHHHHHH-TT--EEEESH-HH-HHHHHHTTSEEEESS--H
T ss_pred HHHHHHhCCceEEEEECCHHHHHHHHHHHHH-cCCcEEECCH-HH-HHHHHHcCCcEEEEEecH
Confidence 4455566666544443446666666666521 1245789999 33 789999999999998874
No 478
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=24.82 E-value=88 Score=27.25 Aligned_cols=46 Identities=22% Similarity=0.184 Sum_probs=36.8
Q ss_pred cCCCcH----HHHHHHHHHcCCCCC--cEEEEcCCchhhHHHHHHcCCeEEE
Q 022007 223 VGKPST----FMMEILSKKFQIASS--RMCMVGDRLDTDILFGQNAGCKTLL 268 (304)
Q Consensus 223 ~gKP~~----~~~~~al~~lg~~~~--~~~~IGD~~~~Di~~a~~aG~~ti~ 268 (304)
.-||+| +.|..-++.+|++|. ++-+|.|+=++--.+|--.|+-..+
T Consensus 80 ilKPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEVWl 131 (293)
T TIGR00388 80 VIKPSPDNIQELYLDSLRALGIDPTEHDIRFVEDNWENPTLGAWGLGWEVWL 131 (293)
T ss_pred EECCCCccHHHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEEEE
Confidence 356766 577778888999876 7999999988888899888876554
No 479
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=24.66 E-value=2.7e+02 Score=23.43 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=7.6
Q ss_pred HHhCCCccCCCCeechH
Q 022007 76 FHSLGVSVSEDEIFSSS 92 (304)
Q Consensus 76 l~~lG~~~~~~~i~~~~ 92 (304)
+.++|.++..-.+++.+
T Consensus 110 ~ARlg~~~~~~~~islH 126 (210)
T COG2241 110 AARLGWPLQDTEVISLH 126 (210)
T ss_pred HHHhCCChHHeEEEEec
Confidence 34455554444444443
No 480
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.61 E-value=90 Score=21.45 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=34.6
Q ss_pred ccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHHHcC
Q 022007 222 VVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQNAG 263 (304)
Q Consensus 222 ~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~~aG 263 (304)
..+-|....++.+.+.+.+++.....|-.+ .-.|..|+.+|
T Consensus 34 pestpftavlkfaaeefkvpaatsaiitnd-giginpaq~ag 74 (94)
T KOG3483|consen 34 PESTPFTAVLKFAAEEFKVPAATSAIITND-GIGINPAQTAG 74 (94)
T ss_pred CCCCchHHHHHHHHHHccCCccceeEEecC-ccccCcccccc
Confidence 456788899999999999998888777777 67888888888
No 481
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=24.33 E-value=1.4e+02 Score=26.36 Aligned_cols=51 Identities=18% Similarity=0.159 Sum_probs=40.1
Q ss_pred ccCCCcHHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHH------HcCCeEEEEccCC
Q 022007 222 VVGKPSTFMMEILSKKFQIASSRMCMVGDRLDTDILFGQ------NAGCKTLLVLSGV 273 (304)
Q Consensus 222 ~~gKP~~~~~~~al~~lg~~~~~~~~IGD~~~~Di~~a~------~aG~~ti~V~~G~ 273 (304)
..--|+++.|..++..+|++.++++++=|+ .+-.-+++ .+|..-+.|+-|.
T Consensus 69 ~~~lp~~e~fa~~~~~~GI~~d~tVVvYdd-~~~~~A~ra~W~l~~~Gh~~V~iLdGG 125 (285)
T COG2897 69 PHMLPSPEQFAKLLGELGIRNDDTVVVYDD-GGGFFAARAWWLLRYLGHENVRILDGG 125 (285)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEECC-CCCeehHHHHHHHHHcCCCceEEecCC
Confidence 345688999999999999999988888777 55555554 4699888887763
No 482
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=24.29 E-value=2.7e+02 Score=19.94 Aligned_cols=70 Identities=17% Similarity=0.135 Sum_probs=36.5
Q ss_pred ccchhhHHHhhhcc-CEEEEeE-EEEc-CCccCccHH--------HHHHHHH-HCCCcEEEEeCCCCcCHHHHHHHHHhC
Q 022007 12 LLSANNITALFDSV-DAFLFDC-VIWK-GDKLIDGVR--------QTLDVLR-SKGKKLIFVTNNSRRSRRQYAHKFHSL 79 (304)
Q Consensus 12 ~~~~~~~~~~~~~~-k~i~fDi-tL~~-~~~~~~~a~--------eal~~L~-~~G~~~~i~Tn~s~r~~~~~~~~l~~l 79 (304)
..+.+.+.+++.+- +.+++|+ .-.. ....+|||. +.+..+. .++.++++..+...|+ ......|+.+
T Consensus 11 ~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~~l~~~~~~l~~~~~~~ivv~C~~G~rs-~~a~~~L~~~ 89 (109)
T cd01533 11 SVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAELVLRVGELAPDPRTPIVVNCAGRTRS-IIGAQSLINA 89 (109)
T ss_pred cCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHHHHhcCCCCCCeEEEECCCCchH-HHHHHHHHHC
Confidence 35566777777654 4788999 3211 122344432 2233332 1345666665533333 4455677788
Q ss_pred CCc
Q 022007 80 GVS 82 (304)
Q Consensus 80 G~~ 82 (304)
|++
T Consensus 90 G~~ 92 (109)
T cd01533 90 GLP 92 (109)
T ss_pred CCC
Confidence 874
No 483
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=24.13 E-value=2.1e+02 Score=25.98 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=11.2
Q ss_pred cHHHHHHHHHHCCCcEEEEe
Q 022007 43 GVRQTLDVLRSKGKKLIFVT 62 (304)
Q Consensus 43 ~a~eal~~L~~~G~~~~i~T 62 (304)
...++|+++.++|++|+++|
T Consensus 252 ~~~~~l~~a~~~Gi~VV~~S 271 (336)
T TIGR00519 252 NKLQELQEASDRGVVVVMTT 271 (336)
T ss_pred HHHHHHHHHHHCCCEEEEeC
Confidence 34555555555665555554
No 484
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=24.12 E-value=1.8e+02 Score=24.44 Aligned_cols=66 Identities=9% Similarity=0.081 Sum_probs=38.8
Q ss_pred cchhhHHHhhhccCEEEE---eE-EEEcCCcc-Ccc-HHHHHHHHHHCCCcEEEEeCCCCc-CHHHHHHHHHh
Q 022007 13 LSANNITALFDSVDAFLF---DC-VIWKGDKL-IDG-VRQTLDVLRSKGKKLIFVTNNSRR-SRRQYAHKFHS 78 (304)
Q Consensus 13 ~~~~~~~~~~~~~k~i~f---Di-tL~~~~~~-~~~-a~eal~~L~~~G~~~~i~Tn~s~r-~~~~~~~~l~~ 78 (304)
++.+.+.+.+.+...+.- +. ++..|+.. -+. ..+.++.+++.|..+.+.||++.. ..+.+.+.++.
T Consensus 46 ~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPll~~~~~~~li~~~~~~g~~~~i~TNG~~~~~~~~~~~ll~~ 118 (235)
T TIGR02493 46 VTPEELIKEVGSYKDFFKASGGGVTFSGGEPLLQPEFLSELFKACKELGIHTCLDTSGFLGGCTEAADELLEY 118 (235)
T ss_pred CCHHHHHHHHHHhHHHHhcCCCeEEEeCcccccCHHHHHHHHHHHHHCCCCEEEEcCCCCCccHHHHHHHHHh
Confidence 566666555554332111 22 55555543 334 458999999999999999997432 14445555554
No 485
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=24.08 E-value=3.5e+02 Score=23.09 Aligned_cols=68 Identities=15% Similarity=0.233 Sum_probs=45.3
Q ss_pred hhhHHHhhhccCEEEEeE-EEE-cCCccCc------cHHHHHHHHHHCCCcEEEEeCCCCcC--HHHH---HHHHHhCCC
Q 022007 15 ANNITALFDSVDAFLFDC-VIW-KGDKLID------GVRQTLDVLRSKGKKLIFVTNNSRRS--RRQY---AHKFHSLGV 81 (304)
Q Consensus 15 ~~~~~~~~~~~k~i~fDi-tL~-~~~~~~~------~a~eal~~L~~~G~~~~i~Tn~s~r~--~~~~---~~~l~~lG~ 81 (304)
.+.+.+++.+-|..+.-+ |-+ +.....+ .-.+.++.|+..|+.++-+.||=... .+.+ .+.|++.|+
T Consensus 27 ~~~v~~~l~~aD~~~~NlE~~v~~~~~~~~~~~~f~~~~~~~~~L~~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi 106 (250)
T PF09587_consen 27 FEDVKPLLQSADLVVANLETPVTDSGQPASGYPHFNAPPEILDALKDAGFDVVSLANNHIFDYGEEGLLDTLEALDKAGI 106 (250)
T ss_pred HHHHHHHHhhCCEEEEEeeecCcCCCCcCCCcceecCCHHHHHHHHHcCCCEEEecCCCCccccHHHHHHHHHHHHHCCC
Confidence 457888899999999988 444 4333333 34688999999999998888874443 2333 344555665
Q ss_pred c
Q 022007 82 S 82 (304)
Q Consensus 82 ~ 82 (304)
.
T Consensus 107 ~ 107 (250)
T PF09587_consen 107 P 107 (250)
T ss_pred c
Confidence 5
No 486
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=23.98 E-value=4.3e+02 Score=22.03 Aligned_cols=20 Identities=5% Similarity=0.066 Sum_probs=11.8
Q ss_pred HHHHHHHHcCCC-CCcEEEEc
Q 022007 230 MMEILSKKFQIA-SSRMCMVG 249 (304)
Q Consensus 230 ~~~~al~~lg~~-~~~~~~IG 249 (304)
..-.+++..|+. |+++..+|
T Consensus 189 gv~~al~~~g~~vp~dv~v~g 209 (265)
T cd06299 189 GAIRAIHDAGLVIGEDISLIG 209 (265)
T ss_pred HHHHHHHHhCCCCCcceeEEE
Confidence 345566667775 56655444
No 487
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=23.84 E-value=4.7e+02 Score=22.46 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=39.7
Q ss_pred hHHHhhhccCEEEEeE-EEEcCCcc---CccHHHHHHHHHHCC-CcEEEEeCCCCcCHHHHHHHHHhC
Q 022007 17 NITALFDSVDAFLFDC-VIWKGDKL---IDGVRQTLDVLRSKG-KKLIFVTNNSRRSRRQYAHKFHSL 79 (304)
Q Consensus 17 ~~~~~~~~~k~i~fDi-tL~~~~~~---~~~a~eal~~L~~~G-~~~~i~Tn~s~r~~~~~~~~l~~l 79 (304)
.+.+-+.+.++=-+|+ -|+..... ..++.++|++|++.| ++.+=+|| .+...+.+.+...
T Consensus 98 ~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~---~~~~~l~~~~~~~ 162 (285)
T cd06660 98 AVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSN---FSAEQLEEALAAA 162 (285)
T ss_pred HHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeC---CCHHHHHHHHHhh
Confidence 3444445555556888 55553332 457889999999999 66677777 5566666666653
No 488
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=23.81 E-value=2.5e+02 Score=21.62 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=31.7
Q ss_pred cCCCcHHHHHHHHHHcCCCCCc-EEEEcCCchh-hH------HHHHHcCCeEEEEccC
Q 022007 223 VGKPSTFMMEILSKKFQIASSR-MCMVGDRLDT-DI------LFGQNAGCKTLLVLSG 272 (304)
Q Consensus 223 ~gKP~~~~~~~al~~lg~~~~~-~~~IGD~~~~-Di------~~a~~aG~~ti~V~~G 272 (304)
...|.++-++.+++.+|+++++ +|+.+++ .. .. -+++.+|.+-+.|..|
T Consensus 75 ~~~p~~~~~~~~~~~~GI~~~~~vVvY~~~-~~~g~~A~r~~~~l~~~G~~~v~ildG 131 (138)
T cd01445 75 SMEPSEAEFAAMFEAKGIDLDKHLIATDGD-DLGGFTACHIALAARLCGHPDVAILDG 131 (138)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCeEEEECCC-CCcchHHHHHHHHHHHcCCCCeEEeCC
Confidence 3466778899999999998876 4444432 11 22 2455677776666655
No 489
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=23.67 E-value=1.5e+02 Score=27.74 Aligned_cols=68 Identities=16% Similarity=0.297 Sum_probs=42.0
Q ss_pred cCCccCccHHHHHHHHHHCCCc-----EEEEe--CCCC-----cCHHHHHHHHHhCCCcc---C--CCCeechHHHHHHH
Q 022007 36 KGDKLIDGVRQTLDVLRSKGKK-----LIFVT--NNSR-----RSRRQYAHKFHSLGVSV---S--EDEIFSSSFAAAMY 98 (304)
Q Consensus 36 ~~~~~~~~a~eal~~L~~~G~~-----~~i~T--n~s~-----r~~~~~~~~l~~lG~~~---~--~~~i~~~~~~~~~~ 98 (304)
+.++.+| .++|++|.+.|+- .++.| |.|. +.-.++.++|++-|.|. . ---...++..++..
T Consensus 282 Dpn~v~P--lD~LreLe~EG~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~ke 359 (431)
T TIGR01917 282 DADRVIP--VDVLRDLEKEGKIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKE 359 (431)
T ss_pred CCCeeee--HHHHHHHHHcCCcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHH
Confidence 3455677 8999999988843 33333 3221 23346777888888881 1 12334456667778
Q ss_pred HHhCCCC
Q 022007 99 LKVNNFP 105 (304)
Q Consensus 99 l~~~~~~ 105 (304)
+.+.|+.
T Consensus 360 iE~~GIP 366 (431)
T TIGR01917 360 IERAGIP 366 (431)
T ss_pred HHHcCCC
Confidence 8877875
No 490
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=23.66 E-value=87 Score=20.59 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCcc
Q 022007 43 GVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSV 83 (304)
Q Consensus 43 ~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~ 83 (304)
-+++++ .+.. |-.+.++++ ...+...+..++++.|+.+
T Consensus 15 ~~k~al-~~~~-g~~l~v~~d-~~~s~~~i~~~~~~~G~~~ 52 (67)
T cd03421 15 KTKKAL-ELEA-GGEIEVLVD-NEVAKENVSRFAESRGYEV 52 (67)
T ss_pred HHHHHH-hcCC-CCEEEEEEc-ChhHHHHHHHHHHHcCCEE
Confidence 466777 5544 444545555 2355678999999999875
No 491
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=23.65 E-value=5.2e+02 Score=22.92 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=37.8
Q ss_pred CcHHHHHHHHHHcCCCCCcEE--EEc--CCchhhHHHHHHcCCeEEEEccCCCC
Q 022007 226 PSTFMMEILSKKFQIASSRMC--MVG--DRLDTDILFGQNAGCKTLLVLSGVTT 275 (304)
Q Consensus 226 P~~~~~~~al~~lg~~~~~~~--~IG--D~~~~Di~~a~~aG~~ti~V~~G~~~ 275 (304)
|..+.++.+.+...++ ++ ++| .+ ..|+..+.++|+..+.|.++...
T Consensus 184 ~~~elLkei~~~~~iP---VV~fAiGGI~T-PedAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 184 VPVELLLEVLKLGKLP---VVNFAAGGVAT-PADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred CCHHHHHHHHHhCCCC---EEEeccCCCCC-HHHHHHHHHcCCCEEEEhHHhhc
Confidence 7788899988866553 66 788 46 78999999999999999998764
No 492
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=23.55 E-value=3.5e+02 Score=20.92 Aligned_cols=82 Identities=5% Similarity=0.123 Sum_probs=48.6
Q ss_pred HHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCc-cCCCCeechHHH----HHHHHHhCCCCCCCeEEEEcCh--
Q 022007 44 VRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVS-VSEDEIFSSSFA----AAMYLKVNNFPQENKVYVIGGE-- 116 (304)
Q Consensus 44 a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~-~~~~~i~~~~~~----~~~~l~~~~~~~~~~v~~~g~~-- 116 (304)
..-.-..|++.|+.++.+- ...+++++.+...+.+.+ +..+...+++.. +.+.|++.++. .. .+++|..
T Consensus 18 k~iv~~~l~~~GfeVi~LG--~~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~-~~-~vivGG~~v 93 (134)
T TIGR01501 18 NKILDHAFTNAGFNVVNLG--VLSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLE-GI-LLYVGGNLV 93 (134)
T ss_pred HHHHHHHHHHCCCEEEECC--CCCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCC-CC-EEEecCCcC
Confidence 3344456788998875443 447888888888877776 443444444432 34566677763 23 3445552
Q ss_pred ----hH---HHHHHHcCCcc
Q 022007 117 ----GI---LEELRQAGYTG 129 (304)
Q Consensus 117 ----~~---~~~l~~~g~~~ 129 (304)
.. .+.+++.|+.-
T Consensus 94 i~~~d~~~~~~~l~~~Gv~~ 113 (134)
T TIGR01501 94 VGKQDFPDVEKRFKEMGFDR 113 (134)
T ss_pred cChhhhHHHHHHHHHcCCCE
Confidence 12 34588888653
No 493
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=23.42 E-value=3.7e+02 Score=21.95 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=36.3
Q ss_pred CcEEEEcCCchhh-----H----HHHHHcCCeEEEEccCCCCccccCCCCC-----CCCCcEEECCHHHHHHh
Q 022007 243 SRMCMVGDRLDTD-----I----LFGQNAGCKTLLVLSGVTTQSTLQDPSN-----NIQPDYYTNQVSDILEL 301 (304)
Q Consensus 243 ~~~~~IGD~~~~D-----i----~~a~~aG~~ti~V~~G~~~~~~~~~~~~-----~~~pd~v~~~l~el~~~ 301 (304)
.=++++-|+-.+| + +.+++.|++...|.-|.....++..+.. +..+.++..++.+|..+
T Consensus 110 kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~~~~~el~~ia~~~~~~~~~~~~~~~~f~~l~~~ 182 (192)
T cd01473 110 KVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGAASENKLKLLAGCDINNDNCPNVIKTEWNNLNGI 182 (192)
T ss_pred eEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEeccccHHHHHHhcCCCCCCCCCCeEEecchhhHHHH
Confidence 3488999984433 3 2467889987777777655555544321 12356666677777654
No 494
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=23.37 E-value=1.3e+02 Score=29.55 Aligned_cols=36 Identities=11% Similarity=0.089 Sum_probs=27.6
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHH
Q 022007 39 KLIDGVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAH 74 (304)
Q Consensus 39 ~~~~~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~ 74 (304)
.--+...++++.++++|.+++.+||+..-+.....+
T Consensus 347 G~T~e~i~a~~~ak~~ga~~IaIT~~~~S~La~~aD 382 (604)
T PRK00331 347 GETADTLAALRLAKELGAKTLAICNVPGSTIARESD 382 (604)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhcC
Confidence 455668899999999999999999965555454444
No 495
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=23.34 E-value=2.8e+02 Score=20.77 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=30.5
Q ss_pred HHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCccCCCCeechHHHHHHH
Q 022007 48 LDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSVSEDEIFSSSFAAAMY 98 (304)
Q Consensus 48 l~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~~~~~i~~~~~~~~~~ 98 (304)
++.|.+.+++-+++|| ....+++-+|+--|++...-.+...-..+.+.
T Consensus 46 FE~L~~~~i~~viv~G---~Ra~DmalRLkyAGv~~~~i~v~~d~~~a~~~ 93 (113)
T PF08353_consen 46 FEKLADPNIKQVIVSG---TRAEDMALRLKYAGVDEEKIIVEEDLEEALDA 93 (113)
T ss_pred HHHHhcCCCCEEEEEe---eeHHHHHhHeeecCcchHHeEecCCHHHHHHH
Confidence 3445666677788888 56788888888888874333334444444444
No 496
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=23.25 E-value=2.2e+02 Score=21.61 Aligned_cols=47 Identities=11% Similarity=0.147 Sum_probs=30.1
Q ss_pred cCCccCccHHHHHHHHHHCCCcEEEEeCCCCc-C-HHHHHHHHHhCCCc
Q 022007 36 KGDKLIDGVRQTLDVLRSKGKKLIFVTNNSRR-S-RRQYAHKFHSLGVS 82 (304)
Q Consensus 36 ~~~~~~~~a~eal~~L~~~G~~~~i~Tn~s~r-~-~~~~~~~l~~lG~~ 82 (304)
+...+.-|..+.++.+++....++|+.++.+. . ...+...-++.|++
T Consensus 27 ragklv~G~~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp 75 (122)
T PRK04175 27 DTGKIKKGTNETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIP 75 (122)
T ss_pred HcCCEeEcHHHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCC
Confidence 34567889999999999877777777765433 2 23444444445555
No 497
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=23.20 E-value=78 Score=21.16 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCCCcCHHHHHHHHHhCCCcc
Q 022007 43 GVRQTLDVLRSKGKKLIFVTNNSRRSRRQYAHKFHSLGVSV 83 (304)
Q Consensus 43 ~a~eal~~L~~~G~~~~i~Tn~s~r~~~~~~~~l~~lG~~~ 83 (304)
-++++|+.+. .|-.+.++++ ..-+...+...+++.|..+
T Consensus 15 ~~kkal~~l~-~G~~l~V~~d-~~~s~~ni~~~~~~~g~~v 53 (69)
T cd03422 15 ATLEALPSLK-PGEILEVISD-CPQSINNIPIDARNHGYKV 53 (69)
T ss_pred HHHHHHHcCC-CCCEEEEEec-CchHHHHHHHHHHHcCCEE
Confidence 4667777664 3554555555 3467788899999999875
No 498
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=23.00 E-value=2.4e+02 Score=21.31 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=41.7
Q ss_pred cchhhHHHhhhccCEEEEeE---EEEcCCc-cCccHHHHHHHHHHC---CCcEEEEeCCCCcCHHHHHHHHHhCCCc
Q 022007 13 LSANNITALFDSVDAFLFDC---VIWKGDK-LIDGVRQTLDVLRSK---GKKLIFVTNNSRRSRRQYAHKFHSLGVS 82 (304)
Q Consensus 13 ~~~~~~~~~~~~~k~i~fDi---tL~~~~~-~~~~a~eal~~L~~~---G~~~~i~Tn~s~r~~~~~~~~l~~lG~~ 82 (304)
.+.+.+.+.++..+ .-.+. .+..++. ..+...+.+..+.+. ++++.+.||.+... .+..+.+.+.|.+
T Consensus 28 ~~~e~i~~~~~~~~-~~~~~~~i~~~~gep~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~-~~~l~~l~~~~~~ 102 (166)
T PF04055_consen 28 MSPEEILEEIKELK-QDKGVKEIFFGGGEPTLHPDFIELLELLRKIKKRGIRISINTNGTLLD-EELLDELKKLGVD 102 (166)
T ss_dssp CHHHHHHHHHHHHH-HHTTHEEEEEESSTGGGSCHHHHHHHHHHHCTCTTEEEEEEEESTTHC-HHHHHHHHHTTCS
T ss_pred CCHHHHHHHHHHHh-HhcCCcEEEEeecCCCcchhHHHHHHHHHHhhccccceeeeccccchh-HHHHHHHHhcCcc
Confidence 45555555555443 01001 2333433 446667777777765 89999999966555 7777888887754
No 499
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=22.92 E-value=79 Score=25.86 Aligned_cols=38 Identities=13% Similarity=0.354 Sum_probs=26.2
Q ss_pred CEEEEeE-EEEcCCccCccHHHHHHHHHHCC--CcEEEEeC
Q 022007 26 DAFLFDC-VIWKGDKLIDGVRQTLDVLRSKG--KKLIFVTN 63 (304)
Q Consensus 26 k~i~fDi-tL~~~~~~~~~a~eal~~L~~~G--~~~~i~Tn 63 (304)
+.+++|+ +=.+...+.+.+..+++.+|+.- .|+++++-
T Consensus 61 ~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~ 101 (178)
T PF14606_consen 61 DLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVSP 101 (178)
T ss_dssp SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE-
T ss_pred CEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEec
Confidence 6777887 43445556667789999999864 78888883
No 500
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=22.75 E-value=3.2e+02 Score=23.17 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=21.4
Q ss_pred ccCccH-HHHHHHHHH--------CCCcEEEEeCCCC----cCHHHHHHHHHhCCCc
Q 022007 39 KLIDGV-RQTLDVLRS--------KGKKLIFVTNNSR----RSRRQYAHKFHSLGVS 82 (304)
Q Consensus 39 ~~~~~a-~eal~~L~~--------~G~~~~i~Tn~s~----r~~~~~~~~l~~lG~~ 82 (304)
.-+||+ +.+|..+.. .|+++.|++...+ |...++...|..+|..
T Consensus 103 ~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSgg~~g~ra~~~LR~vl~~l~a~ 159 (219)
T TIGR02690 103 GAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSGGSQSFNAVNILRRLGRWMRMP 159 (219)
T ss_pred cCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCCcHhHHHHHHHHHHHHHHCCCc
Confidence 445554 456666543 3566666653211 1234444455555554
Done!