BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022009
         (304 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1S3S|G Chain G, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
           P47 C
 pdb|1S3S|H Chain H, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
           P47 C
 pdb|1S3S|I Chain I, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
           P47 C
          Length = 127

 Score = 88.2 bits (217), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 72/125 (57%)

Query: 180 EPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLAD 239
           +P+     F G G+ LGS++      +  +      + +S  ++++E  P+T++QIRLAD
Sbjct: 2   KPKGAFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAEPTTNIQIRLAD 61

Query: 240 GTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSV 299
           G RL+  FN  H ISDI  FI  +RP  A    + M  FP K LAD  QT+++A L N+V
Sbjct: 62  GGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAV 121

Query: 300 VIQKF 304
           ++Q+ 
Sbjct: 122 IVQRL 126


>pdb|1I42|A Chain A, Nmr Structure Of The Ubx Domain From P47
 pdb|1JRU|A Chain A, Nmr Structure Of The Ubx Domain From P47 (Energy Minimised
           Average)
          Length = 89

 Score = 81.3 bits (199), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 57/87 (65%)

Query: 218 SSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMG 277
           +S  ++++E  P+T++QIRLADG RL+  FN  H ISDI  FI  +RP  A    + M  
Sbjct: 2   ASSSILINEAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTT 61

Query: 278 FPPKVLADRTQTIEQAGLANSVVIQKF 304
           FP K LAD  QT+++A L N+V++Q+ 
Sbjct: 62  FPNKELADENQTLKEANLLNAVIVQRL 88


>pdb|1SS6|A Chain A, Solution Structure Of Sep Domain From Human P47
          Length = 102

 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 117 VHNIV-FWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNL-IRR 174
           VH ++  W +GF++++G LR   DP NA FLESI++ E P EL        V++++   R
Sbjct: 12  VHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHR 71

Query: 175 DVKCPEPEKHHVPFQGVGRTLGSSS 199
           D    +P+     F G G+ LGS++
Sbjct: 72  DEDFVKPKGAFKAFTGEGQKLGSTA 96


>pdb|1VAZ|A Chain A, Solution Structures Of The P47 Sep Domain
          Length = 88

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 117 VHNIV-FWANGFTVNDGPLRRLDDPENASFLESIKKSECPKEL 158
           VH ++  W  GF++++G LR   DP NA FLESI++ E P EL
Sbjct: 22  VHVVLKLWKTGFSLDNGDLRSYQDPSNAQFLESIRRGEVPAEL 64


>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70
          Length = 613

 Score = 31.6 bits (70), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 123 WANGFTVNDG------PLRRLDDPENASFLESIKKSECPKELEP 160
           W+ G T+ +       P +++  PE  +F+E  K+ ECP E  P
Sbjct: 523 WSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPP 566


>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex
           With Staurosporine
          Length = 287

 Score = 30.8 bits (68), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 123 WANGFTVNDG------PLRRLDDPENASFLESIKKSECPKELEP 160
           W+ G T+ +       P +++  PE  +F+E  K+ ECP E  P
Sbjct: 197 WSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPP 240


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.130    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,087,303
Number of Sequences: 62578
Number of extensions: 363075
Number of successful extensions: 539
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 533
Number of HSP's gapped (non-prelim): 8
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)