Query 022009
Match_columns 304
No_of_seqs 226 out of 771
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 12:38:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022009.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022009hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ss6_A P47, NSFL1 cofactor P47 100.0 2.1E-35 7E-40 237.1 9.4 92 112-203 8-100 (102)
2 1s3s_G P47 protein; AAA ATPase 100.0 1.3E-32 4.4E-37 229.3 6.1 124 180-304 2-126 (127)
3 1vaz_A NSFL1 cofactor P47; bet 99.9 2.2E-28 7.7E-33 190.5 6.4 70 112-181 18-88 (88)
4 2dzk_A UBX domain-containing p 99.8 6.3E-20 2.1E-24 148.8 10.6 78 226-304 9-89 (109)
5 3qx1_A FAS-associated factor 1 99.8 2.1E-19 7.3E-24 138.7 9.9 75 226-302 3-80 (84)
6 1wj4_A KIAA0794 protein; UBX d 99.8 2E-19 6.9E-24 149.0 10.3 83 220-304 33-119 (124)
7 2cr5_A Reproduction 8; UBX dom 99.8 2.9E-18 9.9E-23 138.9 10.1 72 228-301 21-94 (109)
8 2kzr_A Ubiquitin thioesterase 98.7 1.2E-08 4.1E-13 78.2 6.2 70 232-302 2-74 (86)
9 2pjh_A Protein NPL4, nuclear p 97.3 0.0002 6.8E-09 54.2 4.2 69 231-301 5-76 (80)
10 2dzi_A Ubiquitin-like protein 97.3 0.0018 6E-08 47.6 9.2 69 229-301 6-75 (81)
11 1wju_A NEDD8 ultimate buster-1 97.3 0.0011 3.6E-08 52.6 8.3 70 228-301 13-87 (100)
12 3a9j_A Ubiquitin; protein comp 97.2 0.0011 3.6E-08 47.9 7.4 65 232-300 2-67 (76)
13 3mtn_B UBA80, ubcep1, ubiquiti 97.2 0.0014 4.7E-08 48.6 7.8 68 230-301 3-71 (85)
14 1ndd_A NEDD8, protein (ubiquit 97.2 0.0015 5E-08 47.2 7.6 65 232-300 2-67 (76)
15 1wia_A Hypothetical ubiquitin- 97.1 0.0023 7.9E-08 49.0 8.3 68 228-301 5-73 (95)
16 1yx5_B Ubiquitin; proteasome, 97.0 0.0026 8.9E-08 49.0 8.1 65 232-300 2-67 (98)
17 3dbh_I NEDD8; cell cycle, acti 96.9 0.0042 1.4E-07 46.3 8.1 69 229-301 11-80 (88)
18 1wh3_A 59 kDa 2'-5'-oligoadeny 96.9 0.0068 2.3E-07 45.2 9.2 68 229-300 6-74 (87)
19 3n3k_B Ubiquitin; hydrolase, p 96.8 0.0023 7.9E-08 47.4 6.3 67 231-301 4-71 (85)
20 3k9o_B Ubiquitin, UBB+1; E2-25 96.8 0.004 1.4E-07 47.5 7.8 66 232-301 3-69 (96)
21 3v6c_B Ubiquitin; structural g 96.8 0.0059 2E-07 46.3 8.6 70 228-301 15-85 (91)
22 3phx_B Ubiquitin-like protein 96.8 0.0047 1.6E-07 45.3 7.8 68 229-300 3-71 (79)
23 2hj8_A Interferon-induced 17 k 96.8 0.0055 1.9E-07 46.3 8.2 67 230-300 4-71 (88)
24 2kan_A Uncharacterized protein 96.8 0.0087 3E-07 46.1 9.3 70 227-300 12-82 (94)
25 4hcn_B Polyubiquitin, ubiquiti 96.7 0.0055 1.9E-07 47.3 7.8 68 230-301 22-90 (98)
26 1uel_A HHR23B, UV excision rep 96.7 0.0095 3.3E-07 45.7 9.1 65 232-300 2-70 (95)
27 1j8c_A Ubiquitin-like protein 96.7 0.024 8.3E-07 46.0 12.0 67 229-300 31-98 (125)
28 4fbj_B NEDD8; effector-HOST ta 96.7 0.0056 1.9E-07 46.3 7.6 66 232-301 2-68 (88)
29 2wyq_A HHR23A, UV excision rep 96.7 0.0094 3.2E-07 44.1 8.8 68 230-301 5-76 (85)
30 2bwf_A Ubiquitin-like protein 96.7 0.0048 1.6E-07 44.8 6.9 66 231-301 5-71 (77)
31 1wy8_A NP95-like ring finger p 96.7 0.012 4.2E-07 44.0 9.4 68 229-300 6-76 (89)
32 4dwf_A HLA-B-associated transc 96.7 0.007 2.4E-07 45.6 7.9 68 229-300 4-71 (90)
33 2uyz_B Small ubiquitin-related 96.6 0.006 2E-07 44.7 7.2 67 230-300 3-70 (79)
34 1v2y_A 3300001G02RIK protein; 96.6 0.0045 1.5E-07 49.2 6.6 67 231-300 8-90 (105)
35 1sif_A Ubiquitin; hydrophobic 96.6 0.0063 2.2E-07 46.0 7.0 66 231-300 10-76 (88)
36 2kc2_A Talin-1, F1; FERM, adhe 96.5 0.0083 2.8E-07 49.4 7.5 72 231-303 12-120 (128)
37 3m62_B UV excision repair prot 96.4 0.01 3.5E-07 46.7 7.7 66 232-301 3-69 (106)
38 1ttn_A DC-UBP, dendritic cell- 96.4 0.014 4.7E-07 45.8 8.4 69 229-301 22-91 (106)
39 1wx8_A Riken cDNA 4931431F19; 96.4 0.014 4.7E-07 44.6 8.2 67 229-300 16-83 (96)
40 1wx7_A Ubiquilin 3; ubiquitin- 96.4 0.02 6.9E-07 44.7 9.4 67 229-300 16-83 (106)
41 2kk8_A Uncharacterized protein 96.4 0.01 3.4E-07 44.8 7.3 66 231-300 11-78 (84)
42 2ojr_A Ubiquitin; lanthide-bin 96.4 0.011 3.9E-07 46.6 7.9 68 229-300 34-102 (111)
43 1v5o_A 1700011N24RIK protein; 96.4 0.012 4.2E-07 45.8 7.9 69 231-302 8-81 (102)
44 4eew_A Large proline-rich prot 96.4 0.014 4.9E-07 43.6 8.0 69 228-300 15-83 (88)
45 3plu_A Ubiquitin-like modifier 96.4 0.0098 3.4E-07 46.4 7.0 73 224-300 15-88 (93)
46 3vdz_A Ubiquitin-40S ribosomal 96.3 0.011 3.8E-07 46.8 7.4 67 230-300 35-102 (111)
47 1wyw_B Ubiquitin-like protein 96.3 0.011 3.8E-07 45.6 7.1 68 229-300 20-88 (97)
48 1wxv_A BAG-family molecular ch 96.3 0.03 1E-06 42.4 9.4 68 230-301 7-80 (92)
49 2faz_A Ubiquitin-like containi 96.2 0.013 4.6E-07 42.6 6.8 66 231-300 3-71 (78)
50 1we6_A Splicing factor, putati 96.1 0.025 8.7E-07 44.5 8.6 69 229-301 26-99 (111)
51 1wgh_A Ubiquitin-like 3, HCG-1 96.0 0.054 1.8E-06 43.7 10.0 65 228-296 14-86 (116)
52 1uh6_A Ubiquitin-like 5; beta- 96.0 0.022 7.6E-07 44.9 7.4 70 227-300 25-95 (100)
53 2klc_A Ubiquilin-1; ubiquitin- 95.9 0.027 9.3E-07 43.8 7.7 67 229-300 24-91 (101)
54 1wgd_A Homocysteine-responsive 95.9 0.053 1.8E-06 41.1 9.1 67 230-300 7-80 (93)
55 1we7_A SF3A1 protein; structur 95.9 0.031 1.1E-06 44.3 8.1 68 229-300 24-102 (115)
56 1v86_A DNA segment, CHR 7, way 95.9 0.026 8.8E-07 43.4 7.3 68 228-301 15-83 (95)
57 1yqb_A Ubiquilin 3; structural 95.8 0.03 1E-06 43.5 7.7 68 228-300 20-88 (100)
58 3u30_A Ubiquitin, linear DI-ub 95.8 0.025 8.7E-07 47.7 7.7 70 227-300 17-87 (172)
59 2kdi_A Ubiquitin, vacuolar pro 95.7 0.029 1E-06 44.6 7.3 68 229-300 8-76 (114)
60 1wjn_A Tubulin-folding protein 95.7 0.052 1.8E-06 41.7 8.4 74 229-302 8-89 (97)
61 1wgg_A Ubiquitin carboxyl-term 95.5 0.031 1.1E-06 43.1 6.7 67 229-301 6-74 (96)
62 3b08_A Polyubiquitin-C, ubiqui 95.5 0.036 1.2E-06 45.0 7.4 65 232-300 2-67 (152)
63 2kd0_A LRR repeats and ubiquit 95.5 0.041 1.4E-06 41.3 7.1 68 229-301 11-79 (85)
64 1wf9_A NPL4 family protein; be 95.4 0.042 1.5E-06 43.2 7.2 67 231-301 8-90 (107)
65 3rt3_B Ubiquitin-like protein 95.4 0.052 1.8E-06 45.0 8.1 67 231-300 3-71 (159)
66 2gow_A HCG-1 protein, ubiquiti 95.4 0.059 2E-06 44.0 8.2 63 230-296 17-87 (125)
67 4a20_A Ubiquitin-like protein 95.4 0.061 2.1E-06 41.9 7.9 70 228-301 17-91 (98)
68 2l7r_A Ubiquitin-like protein 95.4 0.043 1.5E-06 41.8 7.0 64 231-300 20-84 (93)
69 1x1m_A Ubiquitin-like protein 95.4 0.078 2.7E-06 41.5 8.5 67 230-300 12-94 (107)
70 2kdb_A Homocysteine-responsive 95.3 0.061 2.1E-06 42.0 7.8 69 228-300 21-95 (99)
71 1v5t_A 8430435I17RIK protein; 95.3 0.087 3E-06 39.9 8.3 69 230-301 7-78 (90)
72 2lxa_A Ubiquitin-like protein 95.3 0.04 1.4E-06 42.0 6.4 67 231-302 2-74 (87)
73 3b1l_X E3 ubiquitin-protein li 94.2 0.0032 1.1E-07 45.7 0.0 65 232-300 2-67 (76)
74 3q3f_A Ribonuclease/ubiquitin 95.2 0.046 1.6E-06 47.7 7.4 67 231-301 106-173 (189)
75 3b08_A Polyubiquitin-C, ubiqui 95.1 0.059 2E-06 43.8 7.3 68 230-301 76-144 (152)
76 1se9_A Ubiquitin family; ubiqu 95.0 0.1 3.4E-06 42.8 8.3 65 229-297 15-87 (126)
77 2kjr_A CG11242; UBL, ubiquitin 94.9 0.14 4.8E-06 39.5 8.7 73 227-300 12-90 (95)
78 3l0w_B Monoubiquitinated proli 94.8 0.097 3.3E-06 44.5 8.1 65 232-300 2-67 (169)
79 3m63_B Ubiquitin domain-contai 94.6 0.036 1.2E-06 43.2 4.4 67 230-301 28-95 (101)
80 3rt3_B Ubiquitin-like protein 94.5 0.12 3.9E-06 42.8 7.8 68 229-300 80-148 (159)
81 2dzj_A Synaptic glycoprotein S 94.4 0.11 3.9E-06 39.4 6.9 71 231-303 11-86 (88)
82 2daf_A FLJ35834 protein; hypot 94.3 0.21 7.1E-06 40.5 8.5 72 226-301 11-83 (118)
83 3u30_A Ubiquitin, linear DI-ub 93.8 0.17 5.9E-06 42.5 7.4 69 229-301 95-164 (172)
84 1oqy_A HHR23A, UV excision rep 93.5 0.16 5.6E-06 48.6 7.6 67 230-300 7-77 (368)
85 3ai5_A Yeast enhanced green fl 93.1 0.3 1E-05 45.7 8.5 70 227-300 230-300 (307)
86 2al3_A TUG long isoform; TUG U 92.9 0.33 1.1E-05 37.5 7.0 65 232-300 11-76 (90)
87 3u5e_m 60S ribosomal protein L 92.8 0.02 6.8E-07 46.4 0.0 65 232-300 2-67 (128)
88 2io0_B Small ubiquitin-related 92.3 0.61 2.1E-05 35.6 8.0 64 230-297 5-68 (91)
89 2dzm_A FAS-associated factor 1 92.3 0.65 2.2E-05 36.2 8.2 67 231-301 10-77 (100)
90 2kj6_A Tubulin folding cofacto 92.0 1.1 3.9E-05 34.5 9.2 75 226-300 10-90 (97)
91 3u5c_f 40S ribosomal protein S 92.0 0.029 9.9E-07 47.3 0.0 65 232-300 2-67 (152)
92 1wm3_A Ubiquitin-like protein 91.9 0.63 2.2E-05 33.6 7.3 66 231-300 2-68 (72)
93 1wz0_A Ubiquitin-like protein 91.8 0.84 2.9E-05 35.8 8.4 68 229-300 23-91 (104)
94 2daj_A KIAA0977 protein, COBL- 91.7 0.7 2.4E-05 35.4 7.4 69 228-297 8-76 (91)
95 2io1_B Small ubiquitin-related 91.5 0.47 1.6E-05 36.4 6.5 65 229-297 6-70 (94)
96 2d07_B Ubiquitin-like protein 91.1 0.77 2.6E-05 35.1 7.3 65 229-297 16-80 (93)
97 3a4r_A Nfatc2-interacting prot 90.9 1.3 4.5E-05 32.6 8.3 67 230-300 7-75 (79)
98 2k8h_A Small ubiquitin protein 90.6 1.1 3.8E-05 35.5 8.0 65 229-297 25-89 (110)
99 1v6e_A Cytoskeleton-associated 89.8 1.3 4.4E-05 33.5 7.6 70 231-301 8-83 (95)
100 2eke_C Ubiquitin-like protein 88.1 2.2 7.6E-05 33.5 8.0 64 229-297 30-93 (106)
101 2fnj_B Transcription elongatio 87.3 1.1 3.7E-05 36.1 5.9 60 233-296 3-63 (118)
102 3kyd_D Small ubiquitin-related 86.2 2.2 7.5E-05 34.2 7.1 66 228-297 38-103 (115)
103 1t0y_A Tubulin folding cofacto 86.1 4 0.00014 32.4 8.7 72 230-301 6-82 (122)
104 3shq_A UBLCP1; phosphatase, hy 82.9 2 6.9E-05 40.1 6.3 71 229-301 4-75 (320)
105 4b6w_A Tubulin-specific chaper 80.5 4.6 0.00016 30.2 6.5 68 232-300 4-78 (86)
106 2jxx_A Nfatc2-interacting prot 80.3 12 0.0004 28.9 8.9 68 226-297 21-89 (97)
107 2xzm_9 RPS31E; ribosome, trans 75.2 0.59 2E-05 40.7 0.0 56 232-291 2-57 (189)
108 4dbg_A Ranbp-type and C3HC4-ty 74.0 5.8 0.0002 31.1 5.5 63 230-296 22-88 (105)
109 3pge_A SUMO-modified prolifera 73.8 9.1 0.00031 33.4 7.3 65 228-297 27-91 (200)
110 3jyu_A Ubiquitin carboxyl-term 73.6 15 0.00051 32.4 8.8 59 243-301 154-216 (231)
111 4ajy_B Transcription elongatio 72.1 5.8 0.0002 31.9 5.2 59 235-297 5-64 (118)
112 3tix_A Ubiquitin-like protein 71.2 9.4 0.00032 33.5 6.7 65 228-297 55-119 (207)
113 4a3p_A Ubiquitin carboxyl-term 71.1 14 0.00047 32.2 7.9 60 242-301 141-204 (217)
114 3ivf_A Talin-1; FERM domain, c 59.4 21 0.00072 33.1 7.2 68 227-295 82-156 (371)
115 2bps_A YUKD protein; ubiquitin 55.6 38 0.0013 25.2 6.7 68 232-301 6-78 (81)
116 3ivf_A Talin-1; FERM domain, c 55.0 27 0.00093 32.4 7.2 71 230-301 3-80 (371)
117 3qij_A Protein 4.1; cytoskelet 51.7 17 0.00058 32.9 5.0 64 230-293 17-82 (296)
118 1wgr_A Growth factor receptor- 49.1 36 0.0012 26.4 5.8 60 231-291 10-74 (100)
119 1s3s_G P47 protein; AAA ATPase 41.9 7 0.00024 31.4 0.7 14 91-104 7-20 (127)
120 4dxa_B KREV interaction trappe 41.2 21 0.00073 32.5 4.0 52 227-280 2-55 (322)
121 3pvl_A Myosin VIIA isoform 1; 38.4 55 0.0019 33.2 6.8 47 229-275 262-309 (655)
122 1mg4_A Doublecortin, doublecor 36.3 22 0.00077 28.1 2.8 36 116-151 14-52 (113)
123 4atu_I Neuronal migration prot 34.6 21 0.00072 34.0 2.8 42 116-162 64-118 (373)
124 1h4r_A Merlin; FERM, neurofibr 32.8 44 0.0015 30.0 4.6 63 229-294 21-86 (314)
125 3au4_A Myosin-X; protein-prote 31.9 56 0.0019 32.0 5.5 46 230-275 216-263 (555)
126 1ef1_A Moesin; membrane, FERM 31.2 48 0.0017 29.4 4.6 63 231-295 2-67 (294)
127 2v1y_A Phosphatidylinositol-4, 27.2 2.2E+02 0.0076 22.2 7.4 70 228-297 17-96 (108)
128 2al6_A Focal adhesion kinase 1 25.0 64 0.0022 30.1 4.3 45 231-275 8-57 (375)
129 4gqo_A LMO0859 protein; virule 20.9 66 0.0023 29.3 3.5 38 116-172 28-65 (433)
130 2dnf_A Doublecortin domain-con 20.2 67 0.0023 24.9 2.9 38 116-153 13-53 (108)
No 1
>1ss6_A P47, NSFL1 cofactor P47, P47 protein, P97; , SEP, signaling protein; NMR {Homo sapiens} SCOP: d.245.1.1
Probab=100.00 E-value=2.1e-35 Score=237.13 Aligned_cols=92 Identities=30% Similarity=0.597 Sum_probs=86.2
Q ss_pred CCCCceEEEEEeccceeecCCCCccCCChhhHHHHHHHHcCCCCccccCCCCCCceEEEEeec-cccCCCCCCCCCcccc
Q 022009 112 QPEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNLIRR-DVKCPEPEKHHVPFQG 190 (304)
Q Consensus 112 ~~~~v~~~It~w~nGF~VdDGpfR~yddP~n~~FL~~I~~G~~P~EL~~~~~~~~V~v~v~~r-~e~y~~~~~~~~~F~G 190 (304)
.++++.|+||||+|||+|||||||+|+||+|++||++|++|+||.||+.+++++.|+|+|+|| +|+|+++++++++|+|
T Consensus 8 ~~~~~~~~ltlw~nGFtVdDGplR~ydDP~N~~FL~~I~~G~~P~EL~~~~~~~~V~v~v~d~~~e~y~~p~~~~~~F~G 87 (102)
T 1ss6_A 8 SSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTG 87 (102)
T ss_dssp CCSCEEEEEEEESSEEEETTSCEEETTCTTTHHHHHHHHHTCCCHHHHTTSCSSCEEEEEEEEETTCCCSSSSSSTTSCS
T ss_pred CCCCceEEEEEecCceEecCCCcccCCCHhHHHHHHHHHhCCCCHHHhcccCCCeEEEEeeeccCccccCCCCcccCCcc
Confidence 356788999999999999999999999999999999999999999999999999999999965 8999999888999999
Q ss_pred cccccccCCCCCC
Q 022009 191 VGRTLGSSSTAAS 203 (304)
Q Consensus 191 ~G~~LGs~~p~~~ 203 (304)
+||+||+++|...
T Consensus 88 ~G~~LGs~~p~~~ 100 (102)
T 1ss6_A 88 EGQKLGSTAPQVL 100 (102)
T ss_dssp SSSSGGGCCSSSS
T ss_pred cCeECCCCCCCCc
Confidence 9999999988753
No 2
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=99.97 E-value=1.3e-32 Score=229.33 Aligned_cols=124 Identities=37% Similarity=0.637 Sum_probs=95.3
Q ss_pred CCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCceeEEEEcCCCCEEEEecCCCCCHHHHHHH
Q 022009 180 EPEKHHVPFQGVGRTLGSSSTAASEPTVDSTPVNTASSSSEGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSF 259 (304)
Q Consensus 180 ~~~~~~~~F~G~G~~LGs~~p~~~~~~~~~~~~~~~~~~~~~~~vd~~~p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~f 259 (304)
+||+++++|+|+||+||+++|...+..++.+.+...+.+...+.+|+++++|+|||||+||+|+++||+.+|||+|||+|
T Consensus 2 ~p~~~~~~F~G~G~~Lgs~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~f 81 (127)
T 1s3s_G 2 KPKGAFKAFTGEGQKLGSTAPQVLNTSSPAQQAENEAKASSSILINEAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLF 81 (127)
T ss_dssp --------CCSCCCCCCSSCCCCCCCSCTTHHHHHHHHHHHHSCCCTTSCCCCEEEEETTTTEEEEECCSSCBHHHHHHH
T ss_pred CCCCCCCCceecCeECCCCCCCCCCCCCCccccccccccCCCccccCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHH
Confidence 46677999999999999998875322111100000011123467999999999999999999999999999999999999
Q ss_pred HHhhCCCC-CCCeEEEecCCCCccccCCCCchhhhCCCCeeEEeeC
Q 022009 260 IDASRPGT-ARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVIQKF 304 (304)
Q Consensus 260 v~~~~~~~-~~~f~L~t~~fP~k~l~d~s~TL~eagL~na~ivqk~ 304 (304)
|..++++. ..+|.|++ +||+|.|+|+++||+||||+|++|||||
T Consensus 82 V~~~~~~~~~~~f~L~t-~fPrk~l~d~~~TL~eagL~psavl~k~ 126 (127)
T 1s3s_G 82 IVDARPAMAATSFVLMT-TFPNKELADENQTLKEANLLNAVIVQRL 126 (127)
T ss_dssp HHHHCSGGGTSCEEEEE-TTTTEECCSTTCBHHHHTCSSCEEEEEE
T ss_pred HHHhCcCCCCCCeEEec-CCCCCCCCCCCCcHHHCCCcCceEEEEe
Confidence 99987654 68999998 9999999998999999999999999998
No 3
>1vaz_A NSFL1 cofactor P47; beta-BETA-beta-alpha-alpha-beta, novel fold, lipid binding protein; NMR {Rattus norvegicus} SCOP: d.245.1.1
Probab=99.95 E-value=2.2e-28 Score=190.52 Aligned_cols=70 Identities=31% Similarity=0.625 Sum_probs=65.3
Q ss_pred CCCCceEEEEEeccceeecCCCCccCCChhhHHHHHHHHcCCCCccccCCCCCCceEEEEeec-cccCCCC
Q 022009 112 QPEPIVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNLIRR-DVKCPEP 181 (304)
Q Consensus 112 ~~~~v~~~It~w~nGF~VdDGpfR~yddP~n~~FL~~I~~G~~P~EL~~~~~~~~V~v~v~~r-~e~y~~~ 181 (304)
.++++.++||||+|||+|||||||+|+||+|++||++|++|+||.||++++++++|+|+|++| +|+|++|
T Consensus 18 ~~~~v~~~LtlW~nGFtVdDGpLR~ydDP~N~~FL~~I~~G~~P~EL~~~~~~~~V~v~l~d~r~E~Y~~P 88 (88)
T 1vaz_A 18 SGQDVHVVLKLWKTGFSLDNGDLRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKP 88 (88)
T ss_dssp CSSCCEEEEEEETTEEECTTSCEEETTSSTHHHHHHHHHHTCCSSHHHHTTSSSCCEEEEEECTTTSSCCC
T ss_pred CCCCceEEEEEecCceEecCCCCcCCCCHhHHHHHHHHHcCCCCHHHHcccCCCceEEEeEECCCCccCCc
Confidence 345688999999999999999999999999999999999999999999999999999999975 8999865
No 4
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=99.81 E-value=6.3e-20 Score=148.78 Aligned_cols=78 Identities=21% Similarity=0.329 Sum_probs=69.3
Q ss_pred CCCCceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCcccc--CCCCchhhhCCCC-eeEEe
Q 022009 226 ENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLA--DRTQTIEQAGLAN-SVVIQ 302 (304)
Q Consensus 226 ~~~p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~--d~s~TL~eagL~n-a~ivq 302 (304)
...++|+||||||||+|+++||+.+|||++||+||..+......+|.|++ +||+|.|+ |.++||+||||.| ++|++
T Consensus 9 ~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t-~fPrk~l~~~d~~~TL~elgL~psa~L~v 87 (109)
T 2dzk_A 9 DRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLAT-MFPRREFTREDYKRRLLDLELAPSASVVL 87 (109)
T ss_dssp CCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEEC-SSSCCBCCTTTTTSBTGGGTCSSEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEc-CCCCcCCcccccCCCHHHCCCCCceEEEE
Confidence 44668999999999999999999999999999999988543357999997 99999998 6789999999998 77777
Q ss_pred eC
Q 022009 303 KF 304 (304)
Q Consensus 303 k~ 304 (304)
+|
T Consensus 88 ~~ 89 (109)
T 2dzk_A 88 LP 89 (109)
T ss_dssp EC
T ss_pred EE
Confidence 65
No 5
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=99.80 E-value=2.1e-19 Score=138.75 Aligned_cols=75 Identities=17% Similarity=0.284 Sum_probs=66.1
Q ss_pred CCCCceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCcccc--CCCCchhhhCCCC-eeEEe
Q 022009 226 ENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLA--DRTQTIEQAGLAN-SVVIQ 302 (304)
Q Consensus 226 ~~~p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~--d~s~TL~eagL~n-a~ivq 302 (304)
.++|+|+||||||||+|+++||+.++||++||+||.... ....+|.|++ +||+|.|+ |.++||+||||.| ++|+.
T Consensus 3 ~~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~~~-~~~~~f~L~t-~fPrk~l~~~d~~~TL~e~gL~p~a~L~v 80 (84)
T 3qx1_A 3 HMEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKG-FPWDEYKLLS-TFPRRDVTQLDPNKSLLEVKLFPQETLFL 80 (84)
T ss_dssp -CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHTT-CCTTTEEEEC-SSSCCBGGGSCTTSBTTTTTCCSEEEEEE
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHcC-CCCCCeEEEe-CCCCCCCcCCCCCCCHHHCCCCCCCEEEE
Confidence 468999999999999999999999999999999999854 3468999997 99999997 7889999999998 55543
No 6
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=99.80 E-value=2e-19 Score=149.03 Aligned_cols=83 Identities=22% Similarity=0.321 Sum_probs=72.9
Q ss_pred CCcccCCCCCceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccc--cCCCCchhhhCCCC
Q 022009 220 EGLVVDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVL--ADRTQTIEQAGLAN 297 (304)
Q Consensus 220 ~~~~vd~~~p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l--~d~s~TL~eagL~n 297 (304)
..+.+|+..++|+||||||||+|+++||+.+|||++||+||... .....+|.|++ +||+|.| .|.++||+||||+|
T Consensus 33 ~~~~~d~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t-~fPrk~l~~~d~~~TL~e~gL~p 110 (124)
T 1wj4_A 33 VVEGIDVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLT-NFPRRKLSHLDYDITLQEAGLCP 110 (124)
T ss_dssp CCCCCCCSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEEC-SSSCCEETSSCSSSCTTTTTCCS
T ss_pred cccccCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEec-CCCCcCCccCCCCCCHHHCCCCC
Confidence 34678999999999999999999999999999999999999986 23367999997 9999999 57899999999998
Q ss_pred --eeEEeeC
Q 022009 298 --SVVIQKF 304 (304)
Q Consensus 298 --a~ivqk~ 304 (304)
++|||++
T Consensus 111 sa~Liv~~~ 119 (124)
T 1wj4_A 111 QETVFVQES 119 (124)
T ss_dssp SBCCEEEEC
T ss_pred ceEEEEEEc
Confidence 6666653
No 7
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=99.75 E-value=2.9e-18 Score=138.87 Aligned_cols=72 Identities=18% Similarity=0.280 Sum_probs=64.3
Q ss_pred CCceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCcccc-CCCCchhhhCCCC-eeEE
Q 022009 228 LPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLA-DRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 228 ~p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~-d~s~TL~eagL~n-a~iv 301 (304)
.++|+||||||||+|+++||+.+|||++||+||.+.. ....+|.|++ +||+|.|. |.++||+||||.| ++|+
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~~-~~~~~f~L~t-~fPrk~l~~d~~~TL~e~gL~p~a~L~ 94 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVG-YHKSLYRLST-SFPRRALEVEGGSSLEDIGITVDTVLN 94 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHT-CCTTTEEEEC-SSSCCBCCCCSSCBHHHHTCSSCEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcC-CCCCCeEEEe-CCCCcCCCCCCCCCHHHcCCCCCeEEE
Confidence 6799999999999999999999999999999999763 3367899997 89999998 6899999999998 4444
No 8
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.75 E-value=1.2e-08 Score=78.22 Aligned_cols=70 Identities=20% Similarity=0.386 Sum_probs=57.0
Q ss_pred eEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCcccc--CCCCchhhhCCCC-eeEEe
Q 022009 232 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLA--DRTQTIEQAGLAN-SVVIQ 302 (304)
Q Consensus 232 ~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~--d~s~TL~eagL~n-a~ivq 302 (304)
+|+||+++|+.++..|+.++||.+|+.+|.....-....+.|+. +||+|.|. |+++||+++||.+ ++|+.
T Consensus 2 ~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~-~~p~k~l~l~~~~~tL~~~gl~~g~~l~v 74 (86)
T 2kzr_A 2 RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILV-GYPPECLDLSDRDITLGDLPIQSGDMLIV 74 (86)
T ss_dssp CEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEE-SSCCCCCCCCCSSCBTTTSSCCTTCEEEC
T ss_pred EEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEe-CCCCcccccCCCCCCHHHcCCCCCCEEEE
Confidence 58999999987643499999999999999987543356788876 99999985 4689999999996 65553
No 9
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.30 E-value=0.0002 Score=54.23 Aligned_cols=69 Identities=6% Similarity=0.128 Sum_probs=54.2
Q ss_pred eeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCC-cccc-CCCCchhhhCCCC-eeEE
Q 022009 231 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPP-KVLA-DRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 231 t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~-k~l~-d~s~TL~eagL~n-a~iv 301 (304)
-.||||.++|...+ .+..+.||.+|++.|....+.....|.|.. +||+ +.|. ..++||+++||.+ .+|.
T Consensus 5 m~lRvrs~~G~~Ri-~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~-~~~p~~~l~~~~~~~l~~lgl~hGd~l~ 76 (80)
T 2pjh_A 5 IIIRVQSPDGVKRI-TATKRETAATFLKKVAKEFGFQNNGFSVYI-NRNKTGEITASSSKSLHLLKIKHGDLLF 76 (80)
T ss_dssp CCCEEECSSEEEEC-CCCSSCCHHHHHHHHHHHTCCCTTTCCCCC-SCCGGGGSSSCCCCTTTTTCCCTTCCEE
T ss_pred EEEEEECCCCCEEE-EcCCcChHHHHHHHHHHHcCCCCCcceEEe-cCCCCCcccCCCCCCHHHcCCCCCCEEE
Confidence 35899999997543 388999999999999987655556788875 8998 6664 4678999999985 5443
No 10
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.28 E-value=0.0018 Score=47.59 Aligned_cols=69 Identities=14% Similarity=0.221 Sum_probs=54.5
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeEE
Q 022009 229 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 229 p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
...+|.||..+|+.+...+..++||.+|.+.|.....-......|+ |..+.|.| +.||.+.|+.+ ++|.
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~---~~gk~L~d-~~tL~~~~i~~g~~i~ 75 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLL---FKGKALAD-GKRLSDYSIGPNSKLN 75 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEE---ETTEECCT-TSBGGGGTCCSSBCCE
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE---ECCeECCC-CCcHHHcCCCCCCEEE
Confidence 3467889999999999999999999999999988653334455663 67888976 58999999986 5443
No 11
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.28 E-value=0.0011 Score=52.56 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=56.4
Q ss_pred CCceeEEEEcCC----CCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeEE
Q 022009 228 LPSTSVQIRLAD----GTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 228 ~p~t~IqIRl~d----G~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
...++|+||+++ |+.+.+.+..++||.+|..-|.....-......|+ |--|.|.| +.||++.+|.+ +.|+
T Consensus 13 tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI---~~GKiL~D-~~TL~~y~I~~gsti~ 87 (100)
T 1wju_A 13 TGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIV---INKKQLQL-GKTLEEQGVAHNVKAM 87 (100)
T ss_dssp CCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEE---ETTEECCT-TSBHHHHTCCSSEEEE
T ss_pred cceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEE---eCCeECCC-CCcHHHcCCCCCCEEE
Confidence 457899999999 77899999999999999999998753324455664 66899987 58999999996 5443
No 12
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=97.22 E-value=0.0011 Score=47.93 Aligned_cols=65 Identities=17% Similarity=0.263 Sum_probs=52.3
Q ss_pred eEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 232 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 232 ~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
.|.||..+|+.+...++.+.||.+|...|.....-......|+ |..+.|.| +.||.+.|+.+ ++|
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~---~~g~~L~d-~~tL~~~~i~~g~~i 67 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQRESTL 67 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TCBTGGGTCCTTCEE
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE---ECCeECCC-CCcHHHcCCCCCCEE
Confidence 5789999999999999999999999999987643223455553 67888977 68999999996 544
No 13
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=97.19 E-value=0.0014 Score=48.56 Aligned_cols=68 Identities=16% Similarity=0.255 Sum_probs=54.5
Q ss_pred ceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeEE
Q 022009 230 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 230 ~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
...|.||..+|+.+.+.+..+.||.+|...|.....-......|+ |..+.|.| +.||.+.++.+ ++|.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~---~~g~~L~d-~~tL~~~~i~~~~~l~ 71 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKWSTLF 71 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE---ETTEECCT-TSBTGGGTCCTTCEEE
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEE---ECCEECCC-CCCHHHcCCCCCCEEE
Confidence 357899999999999999999999999999987643334455664 67899987 58999999996 5543
No 14
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=97.16 E-value=0.0015 Score=47.20 Aligned_cols=65 Identities=12% Similarity=0.230 Sum_probs=51.9
Q ss_pred eEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 232 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 232 ~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
.|.||..+|+.+...+..++||.+|...|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~---~~g~~L~d-~~tL~~~~i~~g~~i 67 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI---YSGKQMND-EKTAADYKILGGSVL 67 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBGGGGTCCTTCEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE---ECCEECCC-CCcHHHcCCCCCCEE
Confidence 5889999999999999999999999999987643223445553 67888976 58999999996 544
No 15
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.08 E-value=0.0023 Score=49.01 Aligned_cols=68 Identities=16% Similarity=0.274 Sum_probs=55.4
Q ss_pred CCceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeEE
Q 022009 228 LPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 228 ~p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
....+|.||..+|+.+.+.+..++||.+|...|.... .....|+ |-.+.|.|++.||.+.|+.+ ++|.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi---~~Gk~L~D~~~tL~~y~i~~g~~i~ 73 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLI---YQGRLLQDPARTLSSLNITNNCVIH 73 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEE---ETTEECCCSSCBTTTTTCCTTEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEE---ECCEEccCCcCCHHHcCCCCCCEEE
Confidence 3457889999999999999999999999999998654 3455664 67899998769999999986 5553
No 16
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=97.01 E-value=0.0026 Score=48.99 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=52.6
Q ss_pred eEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 232 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 232 ~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
+|.||..+|+.+.+.+..+.||.+|...|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~---~~Gk~L~D-~~tL~~~gi~~g~~i 67 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 67 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEE---ETTEECCT-TSBTGGGTCCTTCEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEE---ECCEECCC-CCCHHHcCCCCCCEE
Confidence 5889999999999999999999999999988643323455553 67889977 68999999986 554
No 17
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=96.89 E-value=0.0042 Score=46.34 Aligned_cols=69 Identities=13% Similarity=0.207 Sum_probs=54.4
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeEE
Q 022009 229 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 229 p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
....|.||..+|+.+.+.+..++||.+|...|.....-......|+ |-.+.|.| +.||.+.++.+ ++|.
T Consensus 11 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~---~~G~~L~d-~~tL~~~~i~~~~~i~ 80 (88)
T 3dbh_I 11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI---YSGKQMND-EKTAADYKILGGSVLH 80 (88)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE---ETTEECCT-TSBGGGGTCCTTCEEE
T ss_pred CcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEE---ECCeECCC-CCcHHHcCCCCCCEEE
Confidence 4568999999999999999999999999999987643223445553 56688887 68999999996 5554
No 18
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.88 E-value=0.0068 Score=45.19 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=54.3
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 229 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 229 p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
+...|.||..+|+.+.+.+..++||.+|...|.....-......|+ |-.+.|.| +.||.+.++.+ ++|
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~---~~Gk~L~d-~~tL~~~~i~~g~~i 74 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLE---FQGQVLQD-WLGLGIYGIQDSDTL 74 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEE---ETTEECCS-SSBHHHHTCCTTEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEE---ECCEEccC-CCCHHHCCCCCCCEE
Confidence 4567889999999999999999999999999988653334456664 67788876 58999999986 554
No 19
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=96.85 E-value=0.0023 Score=47.39 Aligned_cols=67 Identities=19% Similarity=0.273 Sum_probs=53.1
Q ss_pred eeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeEE
Q 022009 231 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 231 t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
..|.||..+|+.+.+.+..++||.+|...|.....-......|+ |-.+.|.| +.||.+.++.+ ++|.
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~---~~g~~L~d-~~tL~~~~i~~~~~i~ 71 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIHNHSALY 71 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE---ETBEECCT-TCBTTTTTCCTTCEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE---ECCeECCC-CCCHHHCCCCCCCEEE
Confidence 47889999999999999999999999999987643323445564 56788877 57999999996 5543
No 20
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=96.84 E-value=0.004 Score=47.46 Aligned_cols=66 Identities=17% Similarity=0.250 Sum_probs=52.4
Q ss_pred eEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeEE
Q 022009 232 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 232 ~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
.|.||..+|+.+.+.+..++||.+|...|.....-......|+ |-.+.|.| +.||.+.++.+ ++|.
T Consensus 3 ~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~---~~G~~L~d-~~tL~~~~i~~~~~i~ 69 (96)
T 3k9o_B 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTLH 69 (96)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBTGGGTCCTTCEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEE---ECCEECCC-CCcHHHcCCCCCCEEE
Confidence 5889999999999999999999999999987643223445553 67788886 57999999986 5443
No 21
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=96.83 E-value=0.0059 Score=46.31 Aligned_cols=70 Identities=19% Similarity=0.229 Sum_probs=54.5
Q ss_pred CCceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeEE
Q 022009 228 LPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 228 ~p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
.....|.||..+|+.+.+.+..++||.+|...|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|.
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~Gk~L~D-~~tL~~~gi~~g~~i~ 85 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTLH 85 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE---ETTEECCT-TCBTGGGTCCTTCEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEE---ECCeECCC-cCcHHHCCCCCCCEEE
Confidence 44568899999999999999999999999999987643223344553 56688877 58999999996 5443
No 22
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=96.82 E-value=0.0047 Score=45.33 Aligned_cols=68 Identities=21% Similarity=0.260 Sum_probs=53.8
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 229 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 229 p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
+.-.|.||..+|+.+...+..++||.+|...|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~---~~G~~L~d-~~tL~~~~i~~~~~l 71 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT---FEGKPLED-QLPLGEYGLKPLSTV 71 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TSBGGGGTCCTTCEE
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEE---ECCEECCC-CCcHHHCCCCCCCEE
Confidence 3467899999999999999999999999999987532223445553 67788987 68999999996 554
No 23
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=96.80 E-value=0.0055 Score=46.30 Aligned_cols=67 Identities=21% Similarity=0.266 Sum_probs=53.3
Q ss_pred ceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 230 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 230 ~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
...|.||..+|+.+.+.+..+.||.+|...|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~Gk~L~D-~~tL~~~~I~~g~~i 71 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT---FEGKPLED-QLPLGEYGLKPLSTV 71 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEE---SSSSCCCT-TSBHHHHHCSTTCEE
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE---ECCEECCC-CCcHHHcCCCCCCEE
Confidence 357889999999999999999999999999988643324445553 67888876 58999999986 544
No 24
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=96.77 E-value=0.0087 Score=46.10 Aligned_cols=70 Identities=16% Similarity=0.286 Sum_probs=54.5
Q ss_pred CCCceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 227 NLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 227 ~~p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
......|.||..+| .+.+.+..++||.+|...|.....-....-.|+ |..|.|.|.+.||.+.|+.+ ++|
T Consensus 12 ~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D~~~tL~~ygI~~gstl 82 (94)
T 2kan_A 12 AVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLY---YSGIELADDYRNLNEYGITEFSEI 82 (94)
T ss_dssp SSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEE---ETTEEECCTTSBHHHHTCCTTEEE
T ss_pred CCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE---ECCEECCCCcccHHHCCCCCCCEE
Confidence 34457889999888 788899999999999999998643224455553 67899987558999999986 444
No 25
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.0055 Score=47.31 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=54.1
Q ss_pred ceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeEE
Q 022009 230 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 230 ~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
...|.||..+|+.+.+.+..++||.+|...|.....-......|+ |-.+.|.| +.||.+.++.+ ++|.
T Consensus 22 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~~~i~~g~~i~ 90 (98)
T 4hcn_B 22 PMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTLH 90 (98)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE---ETTEECCT-TCBSGGGTCCTTEEEE
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE---ECCEECCC-CCcHHHCCCCCCCEEE
Confidence 467899999999999999999999999999987643223445664 67788876 58999999996 5543
No 26
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.72 E-value=0.0095 Score=45.68 Aligned_cols=65 Identities=12% Similarity=0.271 Sum_probs=51.7
Q ss_pred eEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhC--CCC-CCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 232 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASR--PGT-ARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 232 ~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~--~~~-~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
+|.||..+|+.+.+.+..+.||.+|...|.... ... .....|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~ygI~~g~~i 70 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLI---YAGKILND-DTALKEYKIDEKNFV 70 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEE---ETTEECCT-TSBGGGGTCCSSSEE
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEE---ECCEECCC-cCcHHHCCCCCCCEE
Confidence 578999999999999999999999999999862 122 3455563 67888976 58999999986 554
No 27
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.71 E-value=0.024 Score=46.01 Aligned_cols=67 Identities=16% Similarity=0.204 Sum_probs=52.4
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 229 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 229 p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
...+|.||.. |+.+.+.+..+.||.+|...|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D-~~tL~dygI~~gstI 98 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLI---FAGKILKD-QDTLIQHGIHDGLTV 98 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEE---ETTEEEST-TSCGGGTTCSSSEEE
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEE---ECCEEcCC-CCCHHHcCCCCCCEE
Confidence 4577888888 88999999999999999999987643224455553 56788876 58999999986 544
No 28
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=96.71 E-value=0.0056 Score=46.34 Aligned_cols=66 Identities=12% Similarity=0.216 Sum_probs=52.3
Q ss_pred eEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeEE
Q 022009 232 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 232 ~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
.|.||..+|+.+.+.+..++||.+|...|.....-......|+ |-.+.|.| +.||.+.++.+ ++|.
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~~~i~~g~~l~ 68 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI---YSGKQMND-EKTAADYKILGGSVLH 68 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE---ETTEECCT-TSBTTTTTCCTTCEEE
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEE---ECCeECCC-CCcHHHcCCCCCCEEE
Confidence 5889999999999999999999999999987643223445553 56788877 68999999996 5543
No 29
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=96.70 E-value=0.0094 Score=44.13 Aligned_cols=68 Identities=13% Similarity=0.272 Sum_probs=53.0
Q ss_pred ceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhC--CCC-CCCeEEEecCCCCccccCCCCchhhhCCCC-eeEE
Q 022009 230 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASR--PGT-ARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 230 ~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~--~~~-~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
...|.||..+|+.+.+.+..++||.+|...|.... ... .....|+ |-.+.|.| +.||.+.|+.+ ++|.
T Consensus 5 ~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~~~i~~g~~i~ 76 (85)
T 2wyq_A 5 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI---YAGKILSD-DVPIRDYRIDEKNFVV 76 (85)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEE---ETTEECCT-TSBGGGGCCCTTSEEE
T ss_pred eEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEE---ECCEECcC-CCCHHHcCCCCCCEEE
Confidence 35788999999999999999999999999999851 222 3445553 66788876 58999999986 5553
No 30
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=96.70 E-value=0.0048 Score=44.75 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=51.6
Q ss_pred eeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeEE
Q 022009 231 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 231 t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
.+|.||. +|+.+...+..++||.+|...|.....-......|+ |..+.|.| +.||.+.|+.+ ++|.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~---~~gk~L~d-~~tL~~~~i~~g~~i~ 71 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLI---YSGKILKD-DQTVESYHIQDGHSVH 71 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBTGGGTCCTTCEEE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEE---ECCeEcCC-CCCHHHcCCCCCCEEE
Confidence 4678888 899899999999999999999987643223445553 67889987 48999999986 5553
No 31
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.69 E-value=0.012 Score=44.00 Aligned_cols=68 Identities=16% Similarity=0.151 Sum_probs=53.1
Q ss_pred CceeEEEEcCCC-CEEEE-ecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 229 PSTSVQIRLADG-TRLIA-HFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 229 p~t~IqIRl~dG-~rl~~-rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
....|.||..+| +.+.+ .+..++||.+|...|.....-......|+ |-.+.|.| +.||.+.++.+ ++|
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~---~~gk~L~d-~~tL~~~~i~~g~~i 76 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLF---YRGKQLEN-GYTLFDYDVGLNDII 76 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEE---ETTEECCS-SSBHHHHTCCTTCEE
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEE---ECCeECCC-CCCHHHCCCCCCCEE
Confidence 456789999999 68888 59999999999999988653334455664 56788876 58999999986 544
No 32
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=96.67 E-value=0.007 Score=45.58 Aligned_cols=68 Identities=16% Similarity=0.247 Sum_probs=53.1
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCCeeE
Q 022009 229 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVV 300 (304)
Q Consensus 229 p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~na~i 300 (304)
+...|.||..+|+.+.+.+..++||.+|...|.....-......|+ |=.+.|.| +.||.+.++-+++|
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi---~~Gk~L~d-~~tL~~~~i~g~~i 71 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI---YQGRVLQD-DKKLQEYNVGGKVI 71 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TSBGGGGTCTTEEE
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE---ECCeECCC-CCCHHHcCCCCcEE
Confidence 3467899999999999999999999999999987642223344553 66788887 68999999944555
No 33
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=96.63 E-value=0.006 Score=44.75 Aligned_cols=67 Identities=10% Similarity=0.199 Sum_probs=53.5
Q ss_pred ceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 230 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 230 ~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
...|.||..+|+.+..++..++||.+|.+.|.....-......|+ |-.+.|.| +.||++.++.+ ++|
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~---~~G~~L~d-~~tl~~~~i~~~~~i 70 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL---FEGQRIAD-NHTPKELGMEEEDVI 70 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TCCHHHHTCCTTEEE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEE---ECCEEeCC-CCCHHHcCCCCCCEE
Confidence 357889999999999999999999999999987643223445553 78899987 48999999996 544
No 34
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.59 E-value=0.0045 Score=49.24 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=55.0
Q ss_pred eeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCC---------------CCeEEEecCCCCccccCCCCchhhhCC
Q 022009 231 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTA---------------RNYQLQMMGFPPKVLADRTQTIEQAGL 295 (304)
Q Consensus 231 t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~---------------~~f~L~t~~fP~k~l~d~s~TL~eagL 295 (304)
.+|.|+..+|+.+.+.+..++||.+|..-|.....-.. ..|.|+ |..+.|.|++.||++.|+
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li---~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT---SAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEE---SSSCEECCSSSBHHHHTC
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEE---eCCcCccCCcCCHHHcCC
Confidence 67899999999999999999999999999987531110 357884 889999887899999999
Q ss_pred CC-eeE
Q 022009 296 AN-SVV 300 (304)
Q Consensus 296 ~n-a~i 300 (304)
.+ ++|
T Consensus 85 ~~g~~l 90 (105)
T 1v2y_A 85 RNRDEV 90 (105)
T ss_dssp CSSEEE
T ss_pred CCCCEE
Confidence 96 544
No 35
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=96.56 E-value=0.0063 Score=46.04 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=52.8
Q ss_pred eeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 231 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 231 t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
-.|.||..+|+.+.+.+..+.||.+|..-|.....-......|+ |..+.|.| +.||.+.|+.+ ++|
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~Gk~L~D-~~tL~~~gi~~g~~i 76 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 76 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE---ETTEECCT-TSBSGGGTCCTTCEE
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEE---ECCEECCC-CCcHHHcCCCCCCEE
Confidence 35789999999999999999999999999987643223445563 67888977 68999999986 544
No 36
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.45 E-value=0.0083 Score=49.44 Aligned_cols=72 Identities=21% Similarity=0.267 Sum_probs=54.7
Q ss_pred eeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCC-CCCeEEEecCCCCc----------------------------
Q 022009 231 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGT-ARNYQLQMMGFPPK---------------------------- 281 (304)
Q Consensus 231 t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~-~~~f~L~t~~fP~k---------------------------- 281 (304)
-.|.|||+||+...++...+.||..+-..|...-.-. ...|.|+. ..|..
T Consensus 12 r~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~k 90 (128)
T 2kc2_A 12 RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVR-ELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQK 90 (128)
T ss_dssp EEEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEE-ECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCS
T ss_pred ccEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccc-cccccccccCchhhccccccccchhHHHHHHHH
Confidence 3699999999999999999999999999998764332 34688875 34421
Q ss_pred -------cccCCCCchhhhCCCC-eeEEee
Q 022009 282 -------VLADRTQTIEQAGLAN-SVVIQK 303 (304)
Q Consensus 282 -------~l~d~s~TL~eagL~n-a~ivqk 303 (304)
..-|.+.||.|-|+.. .+|+.|
T Consensus 91 L~~dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 91 LHTDDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp CCCSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred hcccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 1125589999999994 777665
No 37
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.01 Score=46.68 Aligned_cols=66 Identities=20% Similarity=0.312 Sum_probs=52.5
Q ss_pred eEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeEE
Q 022009 232 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 232 ~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
.|.||..+|+.+.+.+..++||.+|...|.....-....-.|+ |-.+.|.| +.||.+.|+.+ ++|.
T Consensus 3 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D-~~tL~~~~i~~g~~i~ 69 (106)
T 3m62_B 3 SLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLI---YSGKVLQD-SKTVSECGLKDGDQVV 69 (106)
T ss_dssp CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEE---ETTEECCT-TSBTTTTTCCTTCEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEE---ECCEECCC-cCCHHHcCCCCCCEEE
Confidence 5889999999999999999999999999987643223344553 66888987 68999999996 5553
No 38
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.42 E-value=0.014 Score=45.78 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=54.2
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeEE
Q 022009 229 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 229 p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
....|.||..+|+.+.+.+..++||.+|...|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|.
T Consensus 22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~ygI~~g~ti~ 91 (106)
T 1ttn_A 22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWF---FSGRPLTD-KMKFEELKIPKDYVVQ 91 (106)
T ss_dssp CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEE---ETTEECCT-TSHHHHCCCSSSCEEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEE---ECCEECCC-CCcHHHcCCCCCCEEE
Confidence 3467899999999999999999999999999987643224455664 56788876 68999999986 5543
No 39
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.42 E-value=0.014 Score=44.59 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=52.0
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 229 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 229 p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
...+|.||.. |+.+.+.+..++||.+|...|.....-......|+ |-.+.|.| +.||.+.++.+ ++|
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~Gk~L~D-~~tL~~~gi~~g~~i 83 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLI---FTGKILRD-QDILSQRGILDGSTV 83 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCE---ETTEECCT-TSCHHHHTCCTTEEE
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE---ECCEECCC-cCCHHHCCCCCCCEE
Confidence 4567888888 99999999999999999999988643223344553 56788876 58999999986 444
No 40
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.42 E-value=0.02 Score=44.71 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=51.6
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 229 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 229 p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
...+|.||..+|+ +.+.+..++||.+|+..|.....-......|+ |-.+.|.| +.||.+.++.+ ++|
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~~gi~~g~~i 83 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI---FAGKILKD-PDSLAQCGVRDGLTV 83 (106)
T ss_dssp SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEE---ETTEECCT-TSCHHHHTCCTTEEE
T ss_pred ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEE---ECCEECCC-cCcHHHcCCCCCCEE
Confidence 3467888988886 68899999999999999987643224455664 56788876 58999999986 444
No 41
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=96.42 E-value=0.01 Score=44.80 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=52.9
Q ss_pred eeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCcc-ccCCCCchhhhCCCC-eeE
Q 022009 231 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKV-LADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 231 t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~-l~d~s~TL~eagL~n-a~i 300 (304)
-+|.||..+|+.+.+.+..++||.+|..-|.....-......|+ |-.+. |.| +.||++.|+.+ ++|
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~lL~D-~~tL~~y~I~~gs~i 78 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLI---VDGIVILRE-DLTVEQCQIVPTSDI 78 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE---ETTEECCCS-SSBHHHHTCCTTSCE
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE---ECCEEecCC-cCCHHHcCCCCCCEE
Confidence 57899999999999999999999999999988643223445553 67888 766 68999999986 544
No 42
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=96.40 E-value=0.011 Score=46.64 Aligned_cols=68 Identities=16% Similarity=0.245 Sum_probs=54.2
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 229 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 229 p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
...+|.||..+|+.+.+.+..+.||.+|...|.....-......|+ |-.+.|.| +.||.+.++.+ ++|
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~~gI~~gs~I 102 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 102 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEE---ETTEECCS-SCBTTTTTCCTTCEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEE---ECCEECCC-CCcHHHcCCCCCCEE
Confidence 3578899999999999999999999999999987643334456664 56788876 68999999986 544
No 43
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.39 E-value=0.012 Score=45.75 Aligned_cols=69 Identities=13% Similarity=0.216 Sum_probs=52.4
Q ss_pred eeEEEEcCCC----CEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeEEe
Q 022009 231 TSVQIRLADG----TRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVIQ 302 (304)
Q Consensus 231 t~IqIRl~dG----~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~ivq 302 (304)
-+|.||..+| +.+.+.+..++||.+|...|.....-....-.|+ |-.+.|.|+..||.+.++.+ ++|+.
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~gk~L~D~~~tL~~ygI~~g~~l~l 81 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIV---YMEQLLTDDHCSLGSYGLKDGDMVVL 81 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEE---ETTEEECCSSSBHHHHTCCTTEEEEE
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEE---ECCEECCCCcccHHHCCCCCCCEEEE
Confidence 4677888755 6788999999999999999998743323445554 56689988778999999986 55543
No 44
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=96.38 E-value=0.014 Score=43.62 Aligned_cols=69 Identities=16% Similarity=0.233 Sum_probs=53.6
Q ss_pred CCceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCCeeE
Q 022009 228 LPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVV 300 (304)
Q Consensus 228 ~p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~na~i 300 (304)
.....|.||..+|+.+...+..++||.+|...|.....-....-.|+ |-.+.|.| +.||.+.|+-+++|
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~~~i~g~~i 83 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI---YQGRVLQD-DKKLQEYNVGGKVI 83 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TSBGGGGTCTTEEE
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE---ECCEECCC-CCcHHHcCCCCcEE
Confidence 34578999999999999999999999999999987642223344553 67788887 68999999944555
No 45
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=96.35 E-value=0.0098 Score=46.39 Aligned_cols=73 Identities=14% Similarity=0.117 Sum_probs=55.1
Q ss_pred cCCCCCceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 224 VDENLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 224 vd~~~p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
|....+...|-|+...|+.+...+++++||++|.+-|.....-....-.|. |=-+.|.| ..||++.++.+ ++|
T Consensus 15 ~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLi---f~Gk~LkD-~~TL~dY~I~dgstL 88 (93)
T 3plu_A 15 VPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQ---KGGSVLKD-HISLEDYEVHDQTNL 88 (93)
T ss_dssp -----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TSBTGGGTCCTTCEE
T ss_pred cCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEE---eCCEEccC-cCCHHHcCCCCCCEE
Confidence 345567889999999999999999999999999999986532223344553 67788988 58999999997 444
No 46
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=96.31 E-value=0.011 Score=46.81 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=53.4
Q ss_pred ceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 230 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 230 ~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
.-.|.||..+|+.+.+++..++||.+|...|.....-......|+ |-.+.|.| +.||.+.++.+ ++|
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D-~~tL~~~gI~~gs~I 102 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 102 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBTTTTTCCTTCEE
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEE---ECCEECCC-CCcHHHCCCCCCCEE
Confidence 467889999999999999999999999999988643223445553 67788987 57999999996 554
No 47
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=96.30 E-value=0.011 Score=45.60 Aligned_cols=68 Identities=10% Similarity=0.194 Sum_probs=54.5
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 229 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 229 p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
....|.||..+|+.+.+.+..++||.+|...|.....-......|+ |-.+.|.| +.||+++++.+ ++|
T Consensus 20 ~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLi---f~Gk~L~d-~~tl~dy~i~~g~~I 88 (97)
T 1wyw_B 20 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL---FEGQRIAD-NHTPKELGMEEEDVI 88 (97)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TCCHHHHTCCTTCEE
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEE---ECCeEcCC-CCCHHHCCCCCCCEE
Confidence 4567889999999999999999999999999987643333455553 78899987 58999999996 544
No 48
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.29 E-value=0.03 Score=42.41 Aligned_cols=68 Identities=13% Similarity=0.203 Sum_probs=52.6
Q ss_pred ceeEEEEcCCCCEEEEecCCC-----CCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeEE
Q 022009 230 STSVQIRLADGTRLIAHFNLH-----HTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 230 ~t~IqIRl~dG~rl~~rFn~s-----~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
..+|.|+. .|+.+.+.+..+ .||.+|...|.....-....-.|+ |-.+.|.|.+.||.+.|+.+ +.|+
T Consensus 7 ~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~---~~Gk~L~D~~~~L~~~~i~~g~~i~ 80 (92)
T 1wxv_A 7 GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLI---FKGKSLKEMETPLSALGIQDGCRVM 80 (92)
T ss_dssp SEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEE---ETTEEECCSSSBHHHHTCCSSEEEE
T ss_pred eEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEE---ECCeecCCCcccHHHCCCCCCCEEE
Confidence 46788887 578888999985 999999999987643334455664 56889998788999999986 5443
No 49
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=96.21 E-value=0.013 Score=42.62 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=51.3
Q ss_pred eeEEEEcCCCCEE-EEe-cCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 231 TSVQIRLADGTRL-IAH-FNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 231 t~IqIRl~dG~rl-~~r-Fn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
-.|.||..+|+.+ .+. +..++||.+|..-|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~---~~g~~L~d-~~tL~~~~i~~g~~i 71 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLF---YRGKQMED-GHTLFDYEVRLNDTI 71 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TCBTTTTTCCTTCEE
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEE---ECCEECCC-CCCHHHcCCCCCCEE
Confidence 4688999999985 788 9999999999999987643223445553 56788876 58999999986 544
No 50
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=96.14 E-value=0.025 Score=44.54 Aligned_cols=69 Identities=10% Similarity=0.165 Sum_probs=54.0
Q ss_pred CceeEEEEcC---CCCEEEEecCC-CCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeEE
Q 022009 229 PSTSVQIRLA---DGTRLIAHFNL-HHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 229 p~t~IqIRl~---dG~rl~~rFn~-s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
...+|.||.+ +|+.+.+.+.. ++||.+|..-|.....-....-.|+ |-.+.|.| +.||.+.++.+ ++|.
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~---~~Gk~L~D-~~tL~~y~I~~g~~l~ 99 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLS---GKAGFLKD-NMSLAHYNVGAGEILT 99 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEE---CSSSBCCT-TSBTTTTTCSSSCEEE
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEE---ECCEECCC-CCcHHHCCCCCCCEEE
Confidence 4578899998 89999999997 9999999999998753324445563 56778877 68999999996 5543
No 51
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.99 E-value=0.054 Score=43.69 Aligned_cols=65 Identities=17% Similarity=0.209 Sum_probs=51.4
Q ss_pred CCceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCC--------CCCeEEEecCCCCccccCCCCchhhhCCC
Q 022009 228 LPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGT--------ARNYQLQMMGFPPKVLADRTQTIEQAGLA 296 (304)
Q Consensus 228 ~p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~--------~~~f~L~t~~fP~k~l~d~s~TL~eagL~ 296 (304)
.....|.||+.+|..+.+.+..++||.+|...|....+.. .....|+ |=-|.|.| +.||.++++.
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLI---y~GK~LeD-~~TL~~y~I~ 86 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI---YQGRFLHG-NVTLGALKLP 86 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEE---ETTEEECS-SCBTTTTTCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEE---ECCcCCCC-CCcHHHcCCC
Confidence 3457788999999999999999999999999999843211 2344553 77899987 5899999985
No 52
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.96 E-value=0.022 Score=44.86 Aligned_cols=70 Identities=14% Similarity=0.097 Sum_probs=54.9
Q ss_pred CCCceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 227 NLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 227 ~~p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
..+...|-|+...|+.+.+.+..++||.+|..-|.....-....-.| .|..|.|.| ..||.+.|+.+ ++|
T Consensus 25 ~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrL---i~~Gk~L~D-~~TL~dygI~~gstl 95 (100)
T 1uh6_A 25 AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVL---KKWYTIFKD-HVSLGDYEIHDGMNL 95 (100)
T ss_dssp CCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEE---EETTEECCS-SCBHHHHTCCTTEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEE---EECCEECCC-CCCHHHcCCCCCCEE
Confidence 44567889999999999999999999999999999863222233344 378999977 68999999996 544
No 53
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=95.92 E-value=0.027 Score=43.77 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=51.8
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 229 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 229 p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
....|.||.. |+.+.+.+..+.||.+|...|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 24 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~~gI~~g~~I 91 (101)
T 2klc_A 24 KIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLI---FAGKILKD-QDTLSQHGIHDGLTV 91 (101)
T ss_dssp CCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEE---ETTEEECT-TCCTGGGTCCTTCEE
T ss_pred CeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEE---ECCEECCC-cCcHHHcCCCCCCEE
Confidence 3467888888 88889999999999999999987643223344553 66788876 58999999986 544
No 54
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.88 E-value=0.053 Score=41.10 Aligned_cols=67 Identities=12% Similarity=0.224 Sum_probs=51.8
Q ss_pred ceeEEEEcCCCC--EEEEecCCCCCHHHHHHHHHhhCCCC--CCCeEEEecCCCCccccCCCCchhhh--CCCC-eeE
Q 022009 230 STSVQIRLADGT--RLIAHFNLHHTISDIHSFIDASRPGT--ARNYQLQMMGFPPKVLADRTQTIEQA--GLAN-SVV 300 (304)
Q Consensus 230 ~t~IqIRl~dG~--rl~~rFn~s~TV~dvr~fv~~~~~~~--~~~f~L~t~~fP~k~l~d~s~TL~ea--gL~n-a~i 300 (304)
..+|.||..+|+ .+.+.+..++||.+|...|....+.. ...-.|+ |-.|.|.| +.||.+. ++.+ ++|
T Consensus 7 ~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi---~~Gk~L~D-~~tL~~~~~~i~~~~~i 80 (93)
T 1wgd_A 7 GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLI---YSGKLLLD-HQCLRDLLPKQEKRHVL 80 (93)
T ss_dssp CCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEE---ETTEECCS-SSCHHHHSCSSSCSEEE
T ss_pred EEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEE---ECCEECcC-cCCHHHHhcCCCCCCEE
Confidence 467899999998 56667779999999999999875322 4455664 67899987 4899999 9986 444
No 55
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=95.87 E-value=0.031 Score=44.33 Aligned_cols=68 Identities=19% Similarity=0.326 Sum_probs=53.0
Q ss_pred CceeEEEEcCC----------CCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-
Q 022009 229 PSTSVQIRLAD----------GTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN- 297 (304)
Q Consensus 229 p~t~IqIRl~d----------G~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n- 297 (304)
...+|.|++++ |+.+.+.+..++||.+|...|.....-......|+ |-.+.|.| +.||.+.++.+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~---~~Gk~L~D-~~tL~~y~i~~g 99 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQ---YEGIFIKD-SNSLAYYNMASG 99 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEE---ETTEEECT-TSBHHHHTCCSS
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE---ECCEECCC-CCCHHHCCCCCC
Confidence 46789999985 67888999999999999999998643224455564 56788876 58999999986
Q ss_pred eeE
Q 022009 298 SVV 300 (304)
Q Consensus 298 a~i 300 (304)
++|
T Consensus 100 ~~i 102 (115)
T 1we7_A 100 AVI 102 (115)
T ss_dssp CEE
T ss_pred CEE
Confidence 444
No 56
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.86 E-value=0.026 Score=43.42 Aligned_cols=68 Identities=12% Similarity=0.097 Sum_probs=50.4
Q ss_pred CCceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeEE
Q 022009 228 LPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 228 ~p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
....+|.|++ .|+.+.+.+..+.||.+|..-|.....-....-.| -|..+.| |+. ||.+++|.+ +.|+
T Consensus 15 ~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL---~~~Gk~L-dd~-tL~~~~i~~g~~i~ 83 (95)
T 1v86_A 15 KELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKV---MYKGLVP-EDK-TLREIKVTSGAKIM 83 (95)
T ss_dssp CCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCC---BSSSBCC-SSS-BHHHHCCCTTEEEE
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEE---EECCeeC-CcC-cHHHCCCCCCCEEE
Confidence 3457788885 68888999999999999999998764322333444 2788999 444 999999986 5443
No 57
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=95.84 E-value=0.03 Score=43.49 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=52.0
Q ss_pred CCceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 228 LPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 228 ~p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
....+|.||..+|+ ..+.+..+.||.+|...|.....-......|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 20 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D-~~tL~~ygI~~gstI 88 (100)
T 1yqb_A 20 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI---FAGKILKD-PDSLAQCGVRDGLTV 88 (100)
T ss_dssp TTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TSBHHHHTCCTTCEE
T ss_pred CCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEE---ECCEECCC-cCcHHHCCCCCCCEE
Confidence 34578899999886 68899999999999999987643223344553 67788876 58999999986 444
No 58
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=95.82 E-value=0.025 Score=47.71 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=53.8
Q ss_pred CCCceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 227 NLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 227 ~~p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
..+...|.||..+|+.+.+.++.++||.+|...|.....-....-.|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~---~~g~~L~d-~~tL~~~~i~~~~~l 87 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 87 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TCBTGGGTCCTTCEE
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE---ECCccccc-cCCHhHcCCccccee
Confidence 344578899999999999999999999999999988643223344553 56788877 68999999996 444
No 59
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.029 Score=44.64 Aligned_cols=68 Identities=16% Similarity=0.206 Sum_probs=53.8
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 229 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 229 p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
.-..|.||..+|+.+.+.+..+.||.+|..-|.....-....-.|+ |-.+.|.| +.||.+.|+.+ ++|
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~ygI~~gstI 76 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI---WAGKQLED-GRTLSDYNIQRESTL 76 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TCBTTTTTCCSSCEE
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE---ECCEECCC-CCcHHHCCCCCCCEE
Confidence 3467899999999999999999999999999987643223445553 56888876 68999999986 544
No 60
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.67 E-value=0.052 Score=41.66 Aligned_cols=74 Identities=11% Similarity=0.167 Sum_probs=54.5
Q ss_pred CceeEEEEcC---CCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEec--CCCCc--cccCCCCchhhhCCCC-eeE
Q 022009 229 PSTSVQIRLA---DGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMM--GFPPK--VLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 229 p~t~IqIRl~---dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~--~fP~k--~l~d~s~TL~eagL~n-a~i 300 (304)
...+|.|+.+ +|..+..+|..+.||++|..-|.....-......|... .+|.. .|+|++.||...++.+ ..|
T Consensus 8 ~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I 87 (97)
T 1wjn_A 8 QLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL 87 (97)
T ss_dssp CEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred ccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence 4577888864 68889999999999999999998765433455566531 14533 3668899999999996 555
Q ss_pred Ee
Q 022009 301 IQ 302 (304)
Q Consensus 301 vq 302 (304)
..
T Consensus 88 ~V 89 (97)
T 1wjn_A 88 LV 89 (97)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 61
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.54 E-value=0.031 Score=43.11 Aligned_cols=67 Identities=12% Similarity=0.071 Sum_probs=50.7
Q ss_pred CceeEEEEcCCCCEE-EEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeEE
Q 022009 229 PSTSVQIRLADGTRL-IAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 229 p~t~IqIRl~dG~rl-~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
...+|.||+ .|+.+ .+.+..++||.+|..-|.....-....-.|+ |..+.|.|. ||.+.||.+ +.|+
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi---~~Gk~L~D~--tL~~~~I~~g~~i~ 74 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVM---VKGGTLKDD--DWGNIKMKNGMTVL 74 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCE---ETTEECCSS--CCCSCCCCSSCEEE
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE---ECCcCCCCC--CHHHCCCCCCCEEE
Confidence 346778885 67778 5899999999999999998743323444553 788999875 999999986 5554
No 62
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=95.53 E-value=0.036 Score=45.04 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=51.3
Q ss_pred eEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 232 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 232 ~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
.|.||..+|+.+...+..++||.+|..-|.....-......|+ |..+.|.| +.||.+.|+.+ +.|
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~---~~g~~L~d-~~tL~~~~i~~~~~l 67 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 67 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBTGGGTCCTTCEE
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEE---ECCeECcC-cccHHHhccCCCCee
Confidence 5789999999999999999999999999987643223345553 56788876 68999999986 444
No 63
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=95.52 E-value=0.041 Score=41.32 Aligned_cols=68 Identities=19% Similarity=0.322 Sum_probs=49.8
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeEE
Q 022009 229 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 229 p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
.+..+.+. .+|+.+.+.+..+.||.+|...|.....-......|+ |-.+.|.| +.||.++|+.+ ++|.
T Consensus 11 ~~~~~~~~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~Gk~L~D-~~tL~~~gi~~g~~l~ 79 (85)
T 2kd0_A 11 STIKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLI---FKGKVLVE-TSTLKQSDVGSGAKLM 79 (85)
T ss_dssp CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEE---ETTEECCT-TCBTTTTTCCTTEEEE
T ss_pred CcEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE---ECCeECCC-cCCHHHCCCCCCCEEE
Confidence 33444444 4888889999999999999999987643224455564 67888876 58999999986 5543
No 64
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=95.43 E-value=0.042 Score=43.15 Aligned_cols=67 Identities=25% Similarity=0.312 Sum_probs=48.3
Q ss_pred eeEEEEcCCCCEEEEecC-CCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCc-----------cc---cCCCCchhhhCC
Q 022009 231 TSVQIRLADGTRLIAHFN-LHHTISDIHSFIDASRPGTARNYQLQMMGFPPK-----------VL---ADRTQTIEQAGL 295 (304)
Q Consensus 231 t~IqIRl~dG~rl~~rFn-~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k-----------~l---~d~s~TL~eagL 295 (304)
-.|+||..+|+. .+.+. .+.||.+|.+-|.....-......|. |..+ .| .+++.||.+.||
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~---~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLS---TNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCB---SSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEE---ECCccccccCccccccccccCCCCCCHHHCCC
Confidence 458999999975 55778 89999999999997654333445553 3333 44 466799999999
Q ss_pred CC-eeEE
Q 022009 296 AN-SVVI 301 (304)
Q Consensus 296 ~n-a~iv 301 (304)
.+ ++|.
T Consensus 84 ~~G~~L~ 90 (107)
T 1wf9_A 84 AHGSMVY 90 (107)
T ss_dssp CTTCEEE
T ss_pred CCCCEEE
Confidence 86 5554
No 65
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=95.42 E-value=0.052 Score=44.96 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=52.4
Q ss_pred eeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCC-CCccccCCCCchhhhCCCC-eeE
Q 022009 231 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGF-PPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 231 t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~f-P~k~l~d~s~TL~eagL~n-a~i 300 (304)
-.|.||..+|+.+...+..++||.+|..-|.....-....-.|+ -| ..+.|.| +.||.+.|+.+ ++|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~--~~~~g~~L~d-~~tL~~y~i~~~~~l 71 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLA--VHPSGVALQD-RVPLASQGLGPGSTV 71 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEE--EETTCCBCCT-TSCGGGGTCCTTCEE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEE--EcCCCCCCCC-CCCHHHcCCCCCCEE
Confidence 36889999999999999999999999999988643223345554 27 6788865 68999999996 444
No 66
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=95.41 E-value=0.059 Score=43.98 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=50.6
Q ss_pred ceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCC--------CCCeEEEecCCCCccccCCCCchhhhCCC
Q 022009 230 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGT--------ARNYQLQMMGFPPKVLADRTQTIEQAGLA 296 (304)
Q Consensus 230 ~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~--------~~~f~L~t~~fP~k~l~d~s~TL~eagL~ 296 (304)
...|.||+.+|+++.+.+..++||.+|.+.|....|.. .....|+ |=-|.|.| +.||.+.++.
T Consensus 17 ~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLI---y~GK~LeD-~~TL~~y~I~ 87 (125)
T 2gow_A 17 MINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI---YQGRFLHG-NVTLGALKLP 87 (125)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEE---SSSSEEES-SCBTGGGCCC
T ss_pred eEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEE---ECCcCCCC-CCcHHHcCCC
Confidence 47789999999999999999999999999999743321 1234453 78899987 5899999997
No 67
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=95.41 E-value=0.061 Score=41.95 Aligned_cols=70 Identities=16% Similarity=0.244 Sum_probs=51.3
Q ss_pred CCceeEEEEcCCCCEEEE--ecCCCCCHHHHHHHHHhhCCCC-CCCeEEEecCCCCccccCCCCchhhhCC-C-CeeEE
Q 022009 228 LPSTSVQIRLADGTRLIA--HFNLHHTISDIHSFIDASRPGT-ARNYQLQMMGFPPKVLADRTQTIEQAGL-A-NSVVI 301 (304)
Q Consensus 228 ~p~t~IqIRl~dG~rl~~--rFn~s~TV~dvr~fv~~~~~~~-~~~f~L~t~~fP~k~l~d~s~TL~eagL-~-na~iv 301 (304)
.....|-||..+|+.+.. .+..++||.+|.+.|....... ...-.|+ |-.+.|.| +.||.+.++ . +++|+
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi---~~Gk~L~D-~~tL~dy~I~~~g~ti~ 91 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLL---LKGKVLHD-NLFLSDLKVTPANSTIT 91 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEE---ETTEEECT-TCBGGGSCCBTTBCEEE
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEE---ECCEECcC-cCCHHHcCcCCCCCEEE
Confidence 355789999999997555 6679999999999994333333 3345564 67789987 589999999 6 45554
No 68
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=95.40 E-value=0.043 Score=41.84 Aligned_cols=64 Identities=13% Similarity=0.165 Sum_probs=48.8
Q ss_pred eeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 231 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 231 t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
..|.||. |+.+.+.+..++||.+|...|.....-......|+ |-.+.|.| +.||.+.++.+ ++|
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk~L~D-~~tL~~y~I~~gstI 84 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVL---LAGAPLED-EATLGQCGVEALTTL 84 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEE---ETTEECCT-TSBHHHHTCCSSCEE
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEE---ECCEECCC-CCcHHHCCCCCCCEE
Confidence 4566665 88899999999999999999987643223445564 56788876 68999999986 544
No 69
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.37 E-value=0.078 Score=41.50 Aligned_cols=67 Identities=22% Similarity=0.283 Sum_probs=51.6
Q ss_pred ceeEEEEcCCC---CEEEEecCC---------CCCHHHHHHHHHhhCCCC--CCC-eEEEecCCCCccccCCCCchhhhC
Q 022009 230 STSVQIRLADG---TRLIAHFNL---------HHTISDIHSFIDASRPGT--ARN-YQLQMMGFPPKVLADRTQTIEQAG 294 (304)
Q Consensus 230 ~t~IqIRl~dG---~rl~~rFn~---------s~TV~dvr~fv~~~~~~~--~~~-f~L~t~~fP~k~l~d~s~TL~eag 294 (304)
..+|.||..+| ..+.+.|.. ++||.+|...|....+.. ... ..|+ |-.|.|.| +.||.+.+
T Consensus 12 ~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi---~~Gk~L~D-~~tL~~y~ 87 (107)
T 1x1m_A 12 DWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLI---YCGRKLKD-DQTLDFYG 87 (107)
T ss_dssp SCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEE---ETTEECCT-TCBHHHHT
T ss_pred ceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEE---ECCeECCC-CCcHHHcC
Confidence 36789999999 778888665 599999999999876322 344 5563 67889976 58999999
Q ss_pred CCC-eeE
Q 022009 295 LAN-SVV 300 (304)
Q Consensus 295 L~n-a~i 300 (304)
+.+ ++|
T Consensus 88 i~~g~~i 94 (107)
T 1x1m_A 88 IQPGSTV 94 (107)
T ss_dssp CCTTCEE
T ss_pred CCCCCEE
Confidence 986 444
No 70
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=95.35 E-value=0.061 Score=41.96 Aligned_cols=69 Identities=10% Similarity=0.210 Sum_probs=52.3
Q ss_pred CCceeEEEEcCCCC--EEEEecCCCCCHHHHHHHHHhhCCCC--CCCeEEEecCCCCccccCCCCchhhh--CCCCeeE
Q 022009 228 LPSTSVQIRLADGT--RLIAHFNLHHTISDIHSFIDASRPGT--ARNYQLQMMGFPPKVLADRTQTIEQA--GLANSVV 300 (304)
Q Consensus 228 ~p~t~IqIRl~dG~--rl~~rFn~s~TV~dvr~fv~~~~~~~--~~~f~L~t~~fP~k~l~d~s~TL~ea--gL~na~i 300 (304)
.....|.||.++|+ .+.+.+..++||.+|.+-|....+.. .....|+ |--|.|.| +.||.+. ++.+...
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLI---y~Gk~L~D-~~tL~~y~~~I~~~~t 95 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLV---YSGRLLPD-HLQLKDILRKQDEYHM 95 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEE---ETTEEECT-TSBTHHHHTTTCSEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEE---ECCEECCC-CCCHHHHhcCCCCCCE
Confidence 34578999999998 56777899999999999999754332 2455664 67899986 5899999 9987433
No 71
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=95.29 E-value=0.087 Score=39.88 Aligned_cols=69 Identities=10% Similarity=0.136 Sum_probs=51.6
Q ss_pred ceeEEEEcCCCCEEEE-ecCCCCCHHHHHHHHHhhCCCCCCCeEEEecC-CCCccccCCCCchhhhCCCC-eeEE
Q 022009 230 STSVQIRLADGTRLIA-HFNLHHTISDIHSFIDASRPGTARNYQLQMMG-FPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 230 ~t~IqIRl~dG~rl~~-rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~-fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
..+|.|+. .|+.+.+ .+..++||.+|..-|.....-....-.|+. . |-.+.|.| +.||.+.+|.+ +.|+
T Consensus 7 ~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~-~k~~Gk~L~D-~~~L~~~~i~~g~~l~ 78 (90)
T 1v5t_A 7 GLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLG-LKVKGKPAEN-DVKLGALKLKPNTKIM 78 (90)
T ss_dssp SCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEES-CEETTEECCT-TSBHHHHTCCTTEEEE
T ss_pred eEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEe-eccCCcCcCC-CCCHHHcCCCCCCEEE
Confidence 45678886 7888888 899999999999999987433344556652 2 55678876 58999999996 5554
No 72
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=95.28 E-value=0.04 Score=42.00 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=51.0
Q ss_pred eeEEEEcCCCCEEEEe--cCCCCCHHHHHHHH-HhhCCCC-CCCeEEEecCCCCccccCCCCchhhhCC--CCeeEEe
Q 022009 231 TSVQIRLADGTRLIAH--FNLHHTISDIHSFI-DASRPGT-ARNYQLQMMGFPPKVLADRTQTIEQAGL--ANSVVIQ 302 (304)
Q Consensus 231 t~IqIRl~dG~rl~~r--Fn~s~TV~dvr~fv-~~~~~~~-~~~f~L~t~~fP~k~l~d~s~TL~eagL--~na~ivq 302 (304)
-.|-||..+|+.+.+. +..++||.+|..-| ... .+. ...-.|+ |-.|.|.| +.||.++++ .+++|..
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~-~gip~~~QrLi---~~Gk~L~D-~~tL~~y~I~~~~stl~v 74 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEE-KASHISEIKLL---LKGKVLHD-NLFLSDLKVTPANSTITV 74 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTT-SCSSSTTEEEE---ETTEECCT-TCBHHHHCCCGGGCEEEE
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHh-cCCChHHEEEE---ECCEECcC-cCCHHHcCCCCCCCEEEE
Confidence 3688999999987776 55999999999999 543 232 4456664 67899987 589999999 3566654
No 73
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=94.22 E-value=0.0032 Score=45.72 Aligned_cols=65 Identities=17% Similarity=0.254 Sum_probs=49.4
Q ss_pred eEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 232 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 232 ~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
.|.||..+|+.+...+..++||.+|...|.....-......| -|-.+.|.| +.||.+.|+.+ ++|
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL---~~~gk~L~d-~~tL~~~~i~~g~~i 67 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRV---IFAGKELPN-HLTVQNCDLEQQSIV 67 (76)
Confidence 467889999988899999999999999998653222233444 367788876 58999999986 443
No 74
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=95.22 E-value=0.046 Score=47.71 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=53.7
Q ss_pred eeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeEE
Q 022009 231 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 231 t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
-.|.||..+|+.+.+.+..++||.+|..-|.....-......|+ |-.+.|.| +.||.+.++.+ ++|.
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi---~~Gk~L~D-~~tL~dygI~~gstI~ 173 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTLH 173 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE---ETTEECCT-TCBGGGGTCCTTCEEE
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEE---ECCEECCC-CCCHHHCCCCCCCEEE
Confidence 57899999999999999999999999999987643223345553 67899987 68999999986 5553
No 75
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=95.08 E-value=0.059 Score=43.76 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=54.0
Q ss_pred ceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeEE
Q 022009 230 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 230 ~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
...|.|+..+|+.+...+..++||.+|..-|.....-......|+ |..+.|.| +.||.+.|+.+ ++|.
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~---~~g~~L~d-~~tL~~~~i~~~~~i~ 144 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTLH 144 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBTGGGTCCTTCEEE
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEE---ECCEECCC-CCCHHHcCCCCCCEEE
Confidence 357889999999999999999999999999987643224456664 67889976 68999999986 5443
No 76
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=94.99 E-value=0.1 Score=42.79 Aligned_cols=65 Identities=20% Similarity=0.302 Sum_probs=51.8
Q ss_pred CceeEEEEcCCCCEE-EEecCCCCCHHHHHHHHHhhCCCC----C---CCeEEEecCCCCccccCCCCchhhhCCCC
Q 022009 229 PSTSVQIRLADGTRL-IAHFNLHHTISDIHSFIDASRPGT----A---RNYQLQMMGFPPKVLADRTQTIEQAGLAN 297 (304)
Q Consensus 229 p~t~IqIRl~dG~rl-~~rFn~s~TV~dvr~fv~~~~~~~----~---~~f~L~t~~fP~k~l~d~s~TL~eagL~n 297 (304)
....|.||+.+|+.+ .+.|..++||.+|.+-|....+.. . ..-.|+ |=-|.|.| +.||.+.++..
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLI---y~GK~LeD-~~TLsdy~I~~ 87 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLI---SAGKVLEN-SKTVKDYRSPV 87 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEE---ETTEECCT-TSBGGGGSCCT
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEE---ECCeECcC-CCcHHHcCCCc
Confidence 578899999999988 699999999999999998765432 1 123442 67888887 58999999985
No 77
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=94.93 E-value=0.14 Score=39.52 Aligned_cols=73 Identities=7% Similarity=0.067 Sum_probs=53.7
Q ss_pred CCCceeEEEEcCCCC--EEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCc---cccCCCCchhhhCCCC-eeE
Q 022009 227 NLPSTSVQIRLADGT--RLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPK---VLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 227 ~~p~t~IqIRl~dG~--rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k---~l~d~s~TL~eagL~n-a~i 300 (304)
.....+|.|+...++ .+.+++..++||.+|..-|.....-....-.|+- ..+.+ .|.+++.||.+.++.+ ++|
T Consensus 12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~-~~~g~~~~~L~~D~~tL~~Y~i~~gsti 90 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQV-FKGDTCVSTMDNNDAQLGYYANSDGLRL 90 (95)
T ss_dssp CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEE-EETTEEEEECCCTTSBHHHHCCSSSCEE
T ss_pred CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEE-ecCCcccceeCCCCCCHhHCCcCCCCEE
Confidence 355678899987775 6899999999999999999876433344556653 33344 4656689999999996 554
No 78
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=94.80 E-value=0.097 Score=44.53 Aligned_cols=65 Identities=18% Similarity=0.273 Sum_probs=52.2
Q ss_pred eEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 232 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 232 ~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
.|.||..+|+.+.+.+..++||.+|..-|.....-....-.|+ |=.+.|.| +.||.+.++.+ ++|
T Consensus 2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D-~~tL~~y~I~~gstI 67 (169)
T 3l0w_B 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 67 (169)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEE---ETTEECCT-TSBGGGGTCCTTCEE
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEE---ECCccccC-cCcHHHcCCCCCCEE
Confidence 5889999999999999999999999999987643334455664 56788877 68999999996 444
No 79
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.56 E-value=0.036 Score=43.19 Aligned_cols=67 Identities=19% Similarity=0.251 Sum_probs=50.7
Q ss_pred ceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeEE
Q 022009 230 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 230 ~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
..+|.||. +|+.+.+.+..+.||.+|...|.....-....-.|+ |-.+.|.| +.||.+.|+.+ ++|.
T Consensus 28 ~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk~L~D-~~tL~~~gI~~g~tI~ 95 (101)
T 3m63_B 28 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLI---YSGKILKD-DQTVESYHIQDGHSVH 95 (101)
T ss_dssp -CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEE---ETTEECCT-TSBTTTTTCCTTEEEE
T ss_pred EEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEE---ECCEECCC-cCcHHHCCCCCCCEEE
Confidence 35678886 888888999999999999999987643223344553 56788887 68999999996 5543
No 80
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=94.52 E-value=0.12 Score=42.81 Aligned_cols=68 Identities=21% Similarity=0.260 Sum_probs=54.3
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 229 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 229 p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
+...|.||..+|+.+...+..++||.+|..-|.....-......|+ |-.+.|.| +.||.+.++.+ ++|
T Consensus 80 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~G~~L~d-~~tL~~y~i~~g~~l 148 (159)
T 3rt3_B 80 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT---FEGKPLED-QLPLGEYGLKPLSTV 148 (159)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TSBGGGGTCCTTCEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEE---ECCeecCC-CCCHHHcCCCCCCEE
Confidence 3467889999999999999999999999999987643224456664 56788987 58999999996 544
No 81
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.42 E-value=0.11 Score=39.39 Aligned_cols=71 Identities=17% Similarity=0.234 Sum_probs=50.5
Q ss_pred eeEEEEcCCCCEE--EE-ecCCCCCHHHHHHHHHhhCCCC-CCCeEEEecCCCCccccCCCCchhhhCCCC-eeEEee
Q 022009 231 TSVQIRLADGTRL--IA-HFNLHHTISDIHSFIDASRPGT-ARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVIQK 303 (304)
Q Consensus 231 t~IqIRl~dG~rl--~~-rFn~s~TV~dvr~fv~~~~~~~-~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~ivqk 303 (304)
-.|-|+...|+.. .+ .+..++||.+|..-|....... ...-.|.. .+=.|.|.| +.||++.++.+ ++|+.|
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~-~~~Gk~L~D-~~tL~~y~i~~~stl~~K 86 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRL-DPKGKSLKD-EDVLQKLPVGTTATLYFR 86 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEES-STTSCCCCT-TCBTTTSSCCSEEEEEEC
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEe-cCCCcCcCC-CCCHHHcCCCCCCEEEEE
Confidence 4577888888764 36 8899999999999999853322 23344532 333678876 58999999996 666654
No 82
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.31 E-value=0.21 Score=40.48 Aligned_cols=72 Identities=13% Similarity=0.244 Sum_probs=54.4
Q ss_pred CCCCceeEEEE-cCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCCeeEE
Q 022009 226 ENLPSTSVQIR-LADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLANSVVI 301 (304)
Q Consensus 226 ~~~p~t~IqIR-l~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~na~iv 301 (304)
..+...+|.|. .++|.+++.-|..+.||++|.+.|.....-....-.| -|--|.|.| +.||++.|+.+...|
T Consensus 11 ~~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrL---Iy~GKiLKD-~eTL~~~gIk~g~TI 83 (118)
T 2daf_A 11 VEDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQI---RYSGKILKN-NETLVQHGVKPQEIV 83 (118)
T ss_dssp CCSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEE---EETTEEECS-SCCHHHHSCCSSCEE
T ss_pred ccCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEE---EECCeEcCC-cchHHHcCCCCCCEE
Confidence 44556778887 6789999999999999999999998763222233333 488999987 579999999974333
No 83
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=93.76 E-value=0.17 Score=42.49 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=54.7
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeEE
Q 022009 229 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 229 p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
+...|.||..+|+.+..++..++||.+|..-|.....-......|+ |-.+.|.| +.||.+.++.+ ++|.
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~---~~g~~L~D-~~tL~~y~i~~g~tl~ 164 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTLH 164 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE---ETTEECCT-TSBSGGGTCCTTCEEE
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEE---ECCccCCC-CCcHHHhCCCCCCEEE
Confidence 3457889999999999999999999999999987643224556664 56788876 68999999996 5543
No 84
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=93.51 E-value=0.16 Score=48.56 Aligned_cols=67 Identities=13% Similarity=0.256 Sum_probs=52.9
Q ss_pred ceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCC--CC-CCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 230 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRP--GT-ARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 230 ~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~--~~-~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
..+|.||..+|+.+.+.+..++||.+|...|..... .. .....|+ |-.|.|.| +.||.+.++.+ ++|
T Consensus 7 ~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLi---y~GK~L~D-~~tL~dygI~~gstI 77 (368)
T 1oqy_A 7 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI---YAGKILSD-DVPIRDYRIDEKNFV 77 (368)
T ss_dssp CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEE---SSSSEECS-SSBTTTTCCCTTSCE
T ss_pred eEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEE---ECCeecCC-cCCHHHcCCCCCCEE
Confidence 467899999999999999999999999999998421 12 2334453 78899987 58999999996 544
No 85
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=93.12 E-value=0.3 Score=45.70 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=54.9
Q ss_pred CCCceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 227 NLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 227 ~~p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
.....+|.||..+|+.+.+.+..++||.+|..-|.....-....-.|+ |..+.|.| +.||.+.++.+ ++|
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi---~~Gk~L~D-~~TLsdygI~~gstL 300 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQLED-GRTLSDYNIQKESTL 300 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE---ETTEECCT-TSBTGGGTCCTTCEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE---eCCeecCC-CCCHHHcCCCCCCEE
Confidence 345678899999999999999999999999999987643223345554 56888876 68999999986 544
No 86
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=92.86 E-value=0.33 Score=37.48 Aligned_cols=65 Identities=18% Similarity=0.223 Sum_probs=52.8
Q ss_pred eEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 232 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 232 ~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
.|-|..++|+|...+...+.|+.+|.+-......-....|.|. |-+|.| |.++.+.=+||-| |.+
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lk---h~~k~l-DLSlpfRlsgLpnnAkL 76 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLK---FQRTVL-DLSLQWRFANLPNNAKL 76 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEE---ETTEEE-SSSCBHHHHCCCSSCEE
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEE---eCCEec-cccceeEecCCCCCCEE
Confidence 6789999999999999999999998776655543346789885 567777 6789999999996 544
No 87
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=92.77 E-value=0.02 Score=46.42 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=0.0
Q ss_pred eEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 232 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 232 ~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
.|.||..+|+.+.+.+..++||.+|..-|.....-......| -|-.+.|.| +.||.+.|+.+ ++|
T Consensus 2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL---i~~Gk~L~D-~~tL~~~~I~~gsti 67 (128)
T 3u5e_m 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRL---IFAGKQLED-GRTLSDYNIQKESTL 67 (128)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEE---EECCEECCC-CCchhhhccCCCCEE
Confidence 467888999999999999999999999998653211233344 377888876 68999999986 444
No 88
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=92.30 E-value=0.61 Score=35.63 Aligned_cols=64 Identities=14% Similarity=0.215 Sum_probs=51.6
Q ss_pred ceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC
Q 022009 230 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN 297 (304)
Q Consensus 230 ~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n 297 (304)
..+|.|+..+|+.+..++..+.++..|.+.+.....-....+.|+ |--+.|.+ +.|.++++|.+
T Consensus 5 ~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~---FdG~~l~~-~~Tp~dl~med 68 (91)
T 2io0_B 5 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR---FDGQPINE-TDTPAQLEMED 68 (91)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEE---ETTEECCT-TCCTTTTTCCT
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 467788888999999999999999999988877654335566663 77888876 47999999996
No 89
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.28 E-value=0.65 Score=36.21 Aligned_cols=67 Identities=9% Similarity=0.184 Sum_probs=47.7
Q ss_pred eeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeEE
Q 022009 231 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 231 t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
..+.|++ .|+.+.+.+..++||.+|..-|...-.-....=.|+ .||...|.| +.||.+.+|.+ ++|+
T Consensus 10 ~~~~vk~-~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi--~~~~gkL~D-~~tLs~~~I~~gstL~ 77 (100)
T 2dzm_A 10 LDFRVEY-RDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLK--GWKTGDVED-STVLKSLHLPKNNSLY 77 (100)
T ss_dssp EEEEEEC-SSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEE--CCSSSCCCT-TSBHHHHCCCSEEEEE
T ss_pred EEEEEEe-CCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEE--ccCCCCCCC-cCCHHHcCCCCCCEEE
Confidence 4456666 678888899999999999999987532222222353 567666765 68999999996 5543
No 90
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=91.98 E-value=1.1 Score=34.51 Aligned_cols=75 Identities=12% Similarity=0.080 Sum_probs=52.5
Q ss_pred CCCCceeEEEEcCCCC--EEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCc---cccCCCCchhhhCCCC-ee
Q 022009 226 ENLPSTSVQIRLADGT--RLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPK---VLADRTQTIEQAGLAN-SV 299 (304)
Q Consensus 226 ~~~p~t~IqIRl~dG~--rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k---~l~d~s~TL~eagL~n-a~ 299 (304)
.+....+|.|...+.+ .+.++|..+.||++|..-|.....-....-.|+-.+=..+ .|.+++.||.+.++.+ +.
T Consensus 10 ~~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~ 89 (97)
T 2kj6_A 10 HGDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFR 89 (97)
T ss_dssp CCCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCE
T ss_pred CCCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCE
Confidence 3456778888886664 6899999999999999999886433344555642111123 3556679999999986 55
Q ss_pred E
Q 022009 300 V 300 (304)
Q Consensus 300 i 300 (304)
|
T Consensus 90 I 90 (97)
T 2kj6_A 90 L 90 (97)
T ss_dssp E
T ss_pred E
Confidence 4
No 91
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=91.97 E-value=0.029 Score=47.28 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=0.0
Q ss_pred eEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 232 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 232 ~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
.|.||..+|+.+.+.+..++||.+|..-|.....-......| -|-.+.|.| +.||.+.+|.+ ++|
T Consensus 2 qI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrL---i~~Gk~L~D-~~tL~dygI~~gstL 67 (152)
T 3u5c_f 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRL---IFAGKQLED-GRTLSDYNIQKESTL 67 (152)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEE---EECCEEccc-cCcHHHcCCCCCCEE
Confidence 477899999999999999999999999998653211223334 377888887 58999999985 444
No 92
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=91.93 E-value=0.63 Score=33.61 Aligned_cols=66 Identities=14% Similarity=0.228 Sum_probs=51.7
Q ss_pred eeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 231 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 231 t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
.+|.|+-.+|+.+..++..++++..|.+.......-....+.|+ |--+.|.+ +.|.++++|.+ .+|
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~---fdG~~l~~-~~Tp~~l~medgD~I 68 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR---FDGQPINE-TDTPAQLEMEDEDTI 68 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEE---ETTEECCT-TCCTTTTTCCTTEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEE---ECCEEcCC-CCCHHHcCCCCCCEE
Confidence 46788888999999999999999999988776543334566663 77888876 48999999996 444
No 93
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=91.79 E-value=0.84 Score=35.79 Aligned_cols=68 Identities=13% Similarity=0.217 Sum_probs=52.6
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 229 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 229 p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
...+|.|+-.+|+.+.+++..++++..|.+.+.....-....+.|+ |--+.|.+ ..|+++++|.. .+|
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~---FdG~~l~~-~~Tp~dl~medgD~I 91 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR---FDGQPINE-TDTPAQLEMEDEDTI 91 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEE---SSSSBCCT-TSCTTTTTCCTTEEE
T ss_pred CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE---ECCEEcCC-CCCHHHcCCCCCCEE
Confidence 4567888888999999999999999999988776543334456653 77888876 47999999996 444
No 94
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.68 E-value=0.7 Score=35.41 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=57.8
Q ss_pred CCceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC
Q 022009 228 LPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN 297 (304)
Q Consensus 228 ~p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n 297 (304)
+-+.+|+|-++--+..+.|.+..-++++|+--|...+.-....|.|.- ..=..+--|.+.+|.+.||..
T Consensus 8 E~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~-d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 8 EKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLK-DYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEES-CSSCCCBCCTTSCHHHHTCSE
T ss_pred ccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEec-CCCCCcccchhcchhhhhhhh
Confidence 357899999998888999999999999999999998866677888875 444455557889999999986
No 95
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=91.46 E-value=0.47 Score=36.44 Aligned_cols=65 Identities=14% Similarity=0.208 Sum_probs=51.1
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC
Q 022009 229 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN 297 (304)
Q Consensus 229 p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n 297 (304)
...+|.|+-.+|+.+..++..++++..|.+.+.....-....+.|+ |--+.|.+ +.|+++++|.+
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~---FdG~~l~~-~~Tp~dl~med 70 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR---FDGQPINE-TDTPAQLEMED 70 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TCCTTTTTCCT
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 3456777778999999999999999999988876543334556663 78888876 47999999995
No 96
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=91.09 E-value=0.77 Score=35.05 Aligned_cols=65 Identities=14% Similarity=0.208 Sum_probs=51.2
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC
Q 022009 229 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN 297 (304)
Q Consensus 229 p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n 297 (304)
...+|.|+-.+|+.+.+++..++++..|.+.+.....-....+.|+ |=-+.|.+ +.|+++++|..
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~---fdG~~l~~-~~Tp~dl~med 80 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR---FDGQPINE-TDTPAQLEMED 80 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TCCTTTTTCCT
T ss_pred CeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 4567788888999999999999999999988776543334455553 77888876 47999999995
No 97
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=90.89 E-value=1.3 Score=32.61 Aligned_cols=67 Identities=9% Similarity=0.138 Sum_probs=51.5
Q ss_pred ceeEEEEcCCCC-EEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeE
Q 022009 230 STSVQIRLADGT-RLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 230 ~t~IqIRl~dG~-rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
..+|.|+..+|+ .+..++..++++..|.+.+.....-....+.|+ |=-+.|.+ +.|.++++|.+ .+|
T Consensus 7 ~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~---fdG~~l~~-~~Tp~~l~medgD~I 75 (79)
T 3a4r_A 7 ELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFF---FDGTKLSG-KELPADLGLESGDLI 75 (79)
T ss_dssp CEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEE---ETTEECCS-CCCHHHHTCCTTCEE
T ss_pred EEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE---ECCEEcCC-CCCHHHcCCCCCCEE
Confidence 467888889996 899999999999999988776543334456653 67788876 57999999995 444
No 98
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=90.60 E-value=1.1 Score=35.54 Aligned_cols=65 Identities=14% Similarity=0.227 Sum_probs=51.8
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC
Q 022009 229 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN 297 (304)
Q Consensus 229 p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n 297 (304)
...+|.|+..+|+.+.+++..++++..|.+.+.....-....+.|+ |=-+.|.+ +.|+++++|..
T Consensus 25 ~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfi---FdG~~L~~-~~Tp~dl~mED 89 (110)
T 2k8h_A 25 ALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFL---FDGTPIDE-TKTPEELGMED 89 (110)
T ss_dssp CCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEE---SSSCBCCS-SSHHHHHHCSS
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 4567888889999999999999999999988776543334556663 78888886 48999999996
No 99
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=89.83 E-value=1.3 Score=33.55 Aligned_cols=70 Identities=13% Similarity=0.090 Sum_probs=48.8
Q ss_pred eeEEEEcCCCC-EEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCC-CCcc---ccCCCCchhhhCCCC-eeEE
Q 022009 231 TSVQIRLADGT-RLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGF-PPKV---LADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 231 t~IqIRl~dG~-rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~f-P~k~---l~d~s~TL~eagL~n-a~iv 301 (304)
.+|.|+..... .+.+++..++||.+|..-|.....-....-.|.. .- +.+. |.+++.||.+.|+.+ +.|.
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~-~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~ 83 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELEL-YGADDKFYSKLDQEDALLGSYPVDDGCRIH 83 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEE-ECSSSCEEEECCCSSSBTTSSSCCTTCEEE
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEE-eCCCCccccccCCCcCCHhHCCCCCCCEEE
Confidence 66777776554 5889999999999999999987433334445542 22 2343 555679999999986 5543
No 100
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=88.09 E-value=2.2 Score=33.53 Aligned_cols=64 Identities=5% Similarity=0.108 Sum_probs=49.8
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC
Q 022009 229 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN 297 (304)
Q Consensus 229 p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n 297 (304)
...+|.|+- +|+.+..++..++++..|.+.+.....-....+.|+ |=-+.|.+ +.|.++++|.+
T Consensus 30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~---FdG~rl~~-~~Tp~dl~med 93 (106)
T 2eke_C 30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL---YDGIRIQA-DQTPEDLDMED 93 (106)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE---ETTEECCT-TCCTTTTTCCT
T ss_pred CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEE---ECCeEcCC-CCCHHHcCCCC
Confidence 456777777 899999999999999999988776543334455553 77888876 47999999995
No 101
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=87.33 E-value=1.1 Score=36.14 Aligned_cols=60 Identities=12% Similarity=0.223 Sum_probs=45.1
Q ss_pred EEEEcCCCC-EEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCC
Q 022009 233 VQIRLADGT-RLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLA 296 (304)
Q Consensus 233 IqIRl~dG~-rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~ 296 (304)
|+||.--|+ .+.+.+..++||.+|..-|.....-......|+ |-.|.|.| +.||.+.|+.
T Consensus 3 mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi---~~Gk~LeD-~~TLsdy~I~ 63 (118)
T 2fnj_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLY---KDDQLLDD-GKTLGECGFT 63 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBHHHHTCC
T ss_pred EEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEE---ECCeECCC-CCCHHHcCcc
Confidence 455555565 477899999999999999987642223445564 67788876 5899999999
No 102
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=86.21 E-value=2.2 Score=34.18 Aligned_cols=66 Identities=9% Similarity=0.142 Sum_probs=51.7
Q ss_pred CCceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC
Q 022009 228 LPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN 297 (304)
Q Consensus 228 ~p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n 297 (304)
.+..+|.|+-.||..+..++..+.++..|.+.......-....+.++ |--+.|.+ +.|.++++|.+
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFl---FDG~rI~~-~~TP~dL~MED 103 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL---FEGQRIAD-NHTPKELGMEE 103 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEE---ETTEECCT-TCCTTTTTCCT
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEE---ECCeECCC-CCCHHHcCCCC
Confidence 45677888888999999999999999999987766543334566663 77888876 58999999996
No 103
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=86.14 E-value=4 Score=32.40 Aligned_cols=72 Identities=10% Similarity=0.189 Sum_probs=49.0
Q ss_pred ceeEEEEcCCCC-EEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCc---cccCCCCchhhhCCCC-eeEE
Q 022009 230 STSVQIRLADGT-RLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPK---VLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 230 ~t~IqIRl~dG~-rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k---~l~d~s~TL~eagL~n-a~iv 301 (304)
..+|.|+...+. .+.++|..+.||++|..-|.....-....-.|+..+=..+ .|.+++.||.+.|+.+ ++|.
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ih 82 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIH 82 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEE
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEE
Confidence 466777776554 5889999999999999999886433344455542110123 3445679999999996 5553
No 104
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=82.89 E-value=2 Score=40.08 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=51.8
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC-eeEE
Q 022009 229 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 229 p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n-a~iv 301 (304)
...+|.|+. .|+.+.+.+..++||++|..-|.....-....=.|+...|..+.|.| +.||.++||.+ +.|+
T Consensus 4 ~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D-~~~L~~~~ik~g~~l~ 75 (320)
T 3shq_A 4 KEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAAD-NVKISALELKPNFKLM 75 (320)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCT-TSBTTSSCCC--CEEE
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCc-cccHHHcCCCCCCEEE
Confidence 346788996 78889999999999999999998764322333456410166788887 58999999995 5554
No 105
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=80.52 E-value=4.6 Score=30.20 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=43.6
Q ss_pred eEEEEcC--CCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEec----CCCCccccCCCCchhhhCCCC-eeE
Q 022009 232 SVQIRLA--DGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMM----GFPPKVLADRTQTIEQAGLAN-SVV 300 (304)
Q Consensus 232 ~IqIRl~--dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~----~fP~k~l~d~s~TL~eagL~n-a~i 300 (304)
+|.|.-. ......+||..+.||.+|..-|.....-....=.|+.. .|..+.+.| +.||.+-|+.+ ++|
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d-~~tL~~Y~i~~g~~i 78 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMAN-DKQLGYYQCRDEFVI 78 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCT-TSBGGGGTCCTTCEE
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCC-CCCHHHCCCCCCCEE
Confidence 4445422 23346899999999999999998754322333445421 133444544 68999999996 554
No 106
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=80.25 E-value=12 Score=28.86 Aligned_cols=68 Identities=10% Similarity=0.160 Sum_probs=51.0
Q ss_pred CCCCceeEEEEcCCCC-EEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC
Q 022009 226 ENLPSTSVQIRLADGT-RLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN 297 (304)
Q Consensus 226 ~~~p~t~IqIRl~dG~-rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n 297 (304)
+.....+|.|+-.||. .+..++..+.+++.|.+.......-....+.++ |=-..|.. +.|.++++|.+
T Consensus 21 ~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~---FDG~rI~~-~~TP~dLdMED 89 (97)
T 2jxx_A 21 ETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFF---FDGTKLSG-RELPADLGMES 89 (97)
T ss_dssp CSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEE---ETTEECCS-CSCHHHHTCCT
T ss_pred CCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 3445678888889995 789999999999999887766543334455553 66777765 57999999986
No 107
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=75.19 E-value=0.59 Score=40.75 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=0.0
Q ss_pred eEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchh
Q 022009 232 SVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIE 291 (304)
Q Consensus 232 ~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~ 291 (304)
.|-||..+|+.+.+.+..++||.+|...|.....-......| -|-.+.|.| +.||.
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRL---If~GK~LeD-~~TLs 57 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTL---VNNGFIAPN-TELVT 57 (189)
T ss_dssp ------------------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEE---EecCeECCC-CCccc
Confidence 467899999999999999999999999998653221333444 377889987 57887
No 108
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=73.96 E-value=5.8 Score=31.12 Aligned_cols=63 Identities=11% Similarity=0.106 Sum_probs=43.3
Q ss_pred ceeEEEEcCC--C--CEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCC
Q 022009 230 STSVQIRLAD--G--TRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLA 296 (304)
Q Consensus 230 ~t~IqIRl~d--G--~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~ 296 (304)
..+|+|.+.| + ..+.+.+..++||.+|.+-|.....-....=.|+ |-.+ +.+++.||.+.|+.
T Consensus 22 ~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli---~ggk-ll~D~~TL~~ygI~ 88 (105)
T 4dbg_A 22 DIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWV---IGQR-LARDQETLHSHGVR 88 (105)
T ss_dssp CEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTE-EECTTCBTGGGTCC
T ss_pred cEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEe---ccCe-EccCcCcHHHcCCC
Confidence 4666777666 3 4678899999999999999987532222222342 4556 44447899999994
No 109
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=73.79 E-value=9.1 Score=33.43 Aligned_cols=65 Identities=5% Similarity=0.092 Sum_probs=50.6
Q ss_pred CCceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC
Q 022009 228 LPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN 297 (304)
Q Consensus 228 ~p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n 297 (304)
....+|+|+. +|..+..++..+.++..|.........-....+.++ |--+.|.+ +.|.++++|.+
T Consensus 27 ~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~---FdG~rI~~-~~TP~dL~MEd 91 (200)
T 3pge_A 27 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL---YDGIRIQA-DQTPEDLDMED 91 (200)
T ss_dssp CCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEE---ETTEECCT-TCCTTTTTCCT
T ss_pred CCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEE---ECCEEcCC-CCCHHHcCCCC
Confidence 4557788875 999999999999999999987765443334556553 78888886 58999999996
No 110
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=73.57 E-value=15 Score=32.37 Aligned_cols=59 Identities=25% Similarity=0.251 Sum_probs=41.9
Q ss_pred EEEecCCCCCHHHHHHHHHhhCCCC-CCCeEEEecCCC--CccccCCCCchhhhCCCC-eeEE
Q 022009 243 LIAHFNLHHTISDIHSFIDASRPGT-ARNYQLQMMGFP--PKVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 243 l~~rFn~s~TV~dvr~fv~~~~~~~-~~~f~L~t~~fP--~k~l~d~s~TL~eagL~n-a~iv 301 (304)
++.+|...+||.+|...|...-.-. ...+.|-..... ...|.|.++||++|+|.. .+|+
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~il 216 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLV 216 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEE
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEE
Confidence 4688999999999999998864332 235777542112 244667789999999995 5555
No 111
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=72.12 E-value=5.8 Score=31.90 Aligned_cols=59 Identities=10% Similarity=0.224 Sum_probs=42.7
Q ss_pred EEcCCCC-EEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC
Q 022009 235 IRLADGT-RLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN 297 (304)
Q Consensus 235 IRl~dG~-rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n 297 (304)
||+--++ .+.+.+..++||.+|..-|.....-....-.|+ |=.|.|.| +.||.+.|+.+
T Consensus 5 l~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI---~~Gk~LeD-~kTL~dy~I~~ 64 (118)
T 4ajy_B 5 LMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLY---KDDQLLDD-GKTLGECGFTS 64 (118)
T ss_dssp EEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE---ETTEECCT-TSBTTTTTCCG
T ss_pred EEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEE---eCCeECCC-cCCHHHcCCCc
Confidence 4444455 567788999999999999987532223334553 66788876 68999999986
No 112
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=71.22 E-value=9.4 Score=33.49 Aligned_cols=65 Identities=5% Similarity=0.085 Sum_probs=50.3
Q ss_pred CCceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCCCCCeEEEecCCCCccccCCCCchhhhCCCC
Q 022009 228 LPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGTARNYQLQMMGFPPKVLADRTQTIEQAGLAN 297 (304)
Q Consensus 228 ~p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~k~l~d~s~TL~eagL~n 297 (304)
....+|.|+. +|..+..++..+.++..|.+............+.++ |=-+.|.+ +.|.++++|.+
T Consensus 55 ~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFL---FDGqRI~~-ddTPeDLdMED 119 (207)
T 3tix_A 55 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFL---YDGIEIQA-DQTPEDLDMED 119 (207)
T ss_dssp CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEE---ETTEECCS-SCCTTTTTCCT
T ss_pred CCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEE---ECCeecCC-CCCHHHcCCCC
Confidence 4567788875 999999999999999999988776543334455552 67777876 68999999996
No 113
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=71.10 E-value=14 Score=32.24 Aligned_cols=60 Identities=22% Similarity=0.205 Sum_probs=41.3
Q ss_pred EEEEecCCCCCHHHHHHHHHhhCCCC-CCCeEEEecCCCC--ccccCCCCchhhhCCCC-eeEE
Q 022009 242 RLIAHFNLHHTISDIHSFIDASRPGT-ARNYQLQMMGFPP--KVLADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 242 rl~~rFn~s~TV~dvr~fv~~~~~~~-~~~f~L~t~~fP~--k~l~d~s~TL~eagL~n-a~iv 301 (304)
....+|...+||.+|+..|...-.-. ...+.|-...... ..|.+.++||++|+|.. ..|+
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~il 204 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLV 204 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEE
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEE
Confidence 35789999999999999998864322 2356664311122 34557789999999995 5554
No 114
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=59.44 E-value=21 Score=33.15 Aligned_cols=68 Identities=22% Similarity=0.223 Sum_probs=47.5
Q ss_pred CCCceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCC-CCCeEEEecCCCC------ccccCCCCchhhhCC
Q 022009 227 NLPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGT-ARNYQLQMMGFPP------KVLADRTQTIEQAGL 295 (304)
Q Consensus 227 ~~p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~-~~~f~L~t~~fP~------k~l~d~s~TL~eagL 295 (304)
......|.|+|+||+.....+..+.|+++|.+-|.....-. ..-|.|.. .-+. ...-+.+++|.+-+.
T Consensus 82 ~~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~-~~~~~~~~~~~~wL~~~k~l~~q~~ 156 (371)
T 3ivf_A 82 RKKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVR-ELMEEKKDDELNWLDHGRTLREQGV 156 (371)
T ss_dssp EECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEEC-CC----------CCCTTSBTGGGTC
T ss_pred cCceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEE-EecccccchHHHHHhcCchhHhhCC
Confidence 34456899999999999999999999999999998764322 44688864 3331 122245677776554
No 115
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=55.61 E-value=38 Score=25.18 Aligned_cols=68 Identities=13% Similarity=0.208 Sum_probs=50.5
Q ss_pred eEEEEc--CCCCEEEEecCCCCCHHHHHHHHHhhCCCC--CCC-eEEEecCCCCccccCCCCchhhhCCCCeeEE
Q 022009 232 SVQIRL--ADGTRLIAHFNLHHTISDIHSFIDASRPGT--ARN-YQLQMMGFPPKVLADRTQTIEQAGLANSVVI 301 (304)
Q Consensus 232 ~IqIRl--~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~--~~~-f~L~t~~fP~k~l~d~s~TL~eagL~na~iv 301 (304)
.|-|.| -.|+.+-+|+....||..|.+-|..+-.-. ..+ |.|.. .-+...|.+ ..+|.+.++.|.-++
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv-~NK~~~L~~-~~~L~d~~ItnGD~L 78 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRV-VNKDKVFSG-ECKLSDCGITNGDRL 78 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEE-GGGTEEEET-TSBTGGGTCCTTCEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEE-ecCCEEEcC-CCEEeeCCcCCCCEE
Confidence 455666 678899999999999999999888754322 233 78875 456666665 579999999985554
No 116
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=54.99 E-value=27 Score=32.37 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=51.9
Q ss_pred ceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCC----CCCeEEEec-CCCCccc-cCCCCchhhhCCCC-eeEE
Q 022009 230 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGT----ARNYQLQMM-GFPPKVL-ADRTQTIEQAGLAN-SVVI 301 (304)
Q Consensus 230 ~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~----~~~f~L~t~-~fP~k~l-~d~s~TL~eagL~n-a~iv 301 (304)
..+|.|+++ +.....+|..+.||.|+...|....++. ...|-|... ..|.+-. -+...||+..+|.+ +.|.
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~ 80 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTME 80 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEE
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceee
Confidence 357899999 7778999999999999999998766542 567888641 2233321 24467999999986 4443
No 117
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=51.66 E-value=17 Score=32.91 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=44.1
Q ss_pred ceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCC-CCCeEEEecCCC-CccccCCCCchhhh
Q 022009 230 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGT-ARNYQLQMMGFP-PKVLADRTQTIEQA 293 (304)
Q Consensus 230 ~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~-~~~f~L~t~~fP-~k~l~d~s~TL~ea 293 (304)
...|.|.|+||+.+...+..+.|++||.+-|.....-. ..-|-|....-. .+..-|...+|.+.
T Consensus 17 ~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q 82 (296)
T 3qij_A 17 QGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQ 82 (296)
T ss_dssp CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHH
T ss_pred eEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHh
Confidence 45789999999999999999999999999998764322 344777532111 12223455666654
No 118
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=49.09 E-value=36 Score=26.35 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=46.6
Q ss_pred eeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCC-CCCCCeEEEecCCCC----ccccCCCCchh
Q 022009 231 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRP-GTARNYQLQMMGFPP----KVLADRTQTIE 291 (304)
Q Consensus 231 t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~-~~~~~f~L~t~~fP~----k~l~d~s~TL~ 291 (304)
--|+|=+.||+...+....++|++||-+.+..... .....|.|+- .+|- |.|.|.+.-++
T Consensus 10 ~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE-~~P~L~~ER~~EDHE~vve 74 (100)
T 1wgr_A 10 HVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVE-CHPHLALERGLEDHESVVE 74 (100)
T ss_dssp EEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEE-EETTTTEEEEECSSSCHHH
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEE-ecCCCCcEEeccCchhHHH
Confidence 35788899999999999999999999998876442 2367899986 6885 66677654444
No 119
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=41.90 E-value=7 Score=31.40 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=10.4
Q ss_pred CCcccccceecCCc
Q 022009 91 SRSFTGTARLLSGE 104 (304)
Q Consensus 91 ~~~F~G~G~~LG~~ 104 (304)
-..|.|.|+|||+.
T Consensus 7 ~~~F~G~G~~Lgs~ 20 (127)
T 1s3s_G 7 FKAFTGEGQKLGST 20 (127)
T ss_dssp ---CCSCCCCCCSS
T ss_pred CCCceecCeECCCC
Confidence 35799999999994
No 120
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=41.21 E-value=21 Score=32.49 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=35.4
Q ss_pred CCCceeEEEEcCCCCEEEEecCC--CCCHHHHHHHHHhhCCCCCCCeEEEecCCCC
Q 022009 227 NLPSTSVQIRLADGTRLIAHFNL--HHTISDIHSFIDASRPGTARNYQLQMMGFPP 280 (304)
Q Consensus 227 ~~p~t~IqIRl~dG~rl~~rFn~--s~TV~dvr~fv~~~~~~~~~~f~L~t~~fP~ 280 (304)
+.|..+|.|-|+||+...+.|.. +.|+++|.+-+. .......-|.|.. .-|.
T Consensus 2 ~~~~~~i~V~l~dg~~~~~~i~~~~~tt~~el~e~lg-L~~~~~~~FaL~~-~~~~ 55 (322)
T 4dxa_B 2 SPEFEKVRIYRMDGSYRSVELKHGNNTTVQQIMEGMR-LSQETQQYFTIWI-CSEN 55 (322)
T ss_dssp ---CCEEEEECTTSCEEEEECTTGGGCCHHHHHTTSS-CCTTGGGGEEEEE-ECSS
T ss_pred CCCceEEEEEEECCcEEEEEEcCCCCCcHHHHHHHhC-cCccccCeeEEEE-ECCc
Confidence 45788999999999999999999 999999954321 1111123588875 3444
No 121
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=38.41 E-value=55 Score=33.24 Aligned_cols=47 Identities=11% Similarity=0.110 Sum_probs=38.9
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCC-CCCeEEEe
Q 022009 229 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGT-ARNYQLQM 275 (304)
Q Consensus 229 p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~-~~~f~L~t 275 (304)
....++|.|+||+.+...+..+.|+++|.+.|.....-. ..-|.|..
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 346789999999999999999999999999998875322 45688864
No 122
>1mg4_A Doublecortin, doublecortin-like kinase (N-terminal domain); DCX domain, microtubule bundling, cortex development, transferase; 1.50A {Homo sapiens} SCOP: d.15.11.1 PDB: 1mfw_A 1mjd_A 2bqq_A 2xrp_I*
Probab=36.28 E-value=22 Score=28.08 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=21.7
Q ss_pred ceEEEEEeccceeecCCCCccCC---ChhhHHHHHHHHc
Q 022009 116 IVHNIVFWANGFTVNDGPLRRLD---DPENASFLESIKK 151 (304)
Q Consensus 116 v~~~It~w~nGF~VdDGpfR~yd---dP~n~~FL~~I~~ 151 (304)
..+.|+||+||=....|--...+ -+.-.+||++|.+
T Consensus 14 kak~I~~yrNGD~~~~G~~~~v~~~~~~tfd~LL~~lT~ 52 (113)
T 1mg4_A 14 KAKKVRFYRNGDRYFKGIVYAISPDRFRSFEALLADLTR 52 (113)
T ss_dssp CSEEEEEEETTCSSCCCEEEEECTTTCSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCCCEEEEECccccCCHHHHHHHHHH
Confidence 45789999999333333221111 1356789999865
No 123
>4atu_I Neuronal migration protein doublecortin; hydrolase, microtubule-associated protein; HET: GDP GTP; 8.30A {Homo sapiens} PDB: 1uf0_A
Probab=34.55 E-value=21 Score=34.00 Aligned_cols=42 Identities=21% Similarity=0.500 Sum_probs=30.3
Q ss_pred ceEEEEEeccc--------eeecCCCCccCCChhhHHHHHHHHcC-----CCCccccCCC
Q 022009 116 IVHNIVFWANG--------FTVNDGPLRRLDDPENASFLESIKKS-----ECPKELEPAD 162 (304)
Q Consensus 116 v~~~It~w~nG--------F~VdDGpfR~yddP~n~~FL~~I~~G-----~~P~EL~~~~ 162 (304)
....|+||+|| |.|+-.-|+.|+ .||++|.+. .+|.-....|
T Consensus 64 kAKrV~fyrNGD~~f~G~~~~V~~~r~~tfd-----~lL~~lT~~Ls~~v~LP~GVR~i~ 118 (373)
T 4atu_I 64 KAKKVRFYRNGDRYFKGIVYAVSSDRFRSFD-----ALLADLTRSLSDNINLPQGVRYIY 118 (373)
T ss_dssp CCEEEEEEESSCSSCCCEEEEECTTTCSSHH-----HHHHHHHHHSCCSSSCTTSCSEEE
T ss_pred cceEEEEEeCCCCCCCCeEEEECCcccCCHH-----HHHHHHHHHhhccCCCCceeEEEE
Confidence 34789999999 888887777765 899987652 3455555555
No 124
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=32.82 E-value=44 Score=30.03 Aligned_cols=63 Identities=10% Similarity=0.066 Sum_probs=44.0
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCC-CCCeEEEecCCCCcc--ccCCCCchhhhC
Q 022009 229 PSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGT-ARNYQLQMMGFPPKV--LADRTQTIEQAG 294 (304)
Q Consensus 229 p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~-~~~f~L~t~~fP~k~--l~d~s~TL~eag 294 (304)
....|.|.|+|| .+...+..+.|++||.+-|.....-. ..-|-|.. . .... .-|.+.+|.+.+
T Consensus 21 ~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~-~-~~~~~~wL~~~~~i~~q~ 86 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQY-T-IKDTVAWLKMDKKVLDHD 86 (314)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEE-E-ETTEEEECCTTSBGGGSS
T ss_pred CeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEE-E-eCCcCeeCCCccCHHHcC
Confidence 356789999999 67899999999999999988754222 34577764 2 2222 225566777654
No 125
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=31.92 E-value=56 Score=32.04 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=37.6
Q ss_pred ceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCC--CCCeEEEe
Q 022009 230 STSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGT--ARNYQLQM 275 (304)
Q Consensus 230 ~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~--~~~f~L~t 275 (304)
...|+|.|+||+.+...+..+.|+++|.+-|.....-. ..-|.|..
T Consensus 216 ~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 216 EMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 46789999999999999999999999999998865332 23577764
No 126
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=31.16 E-value=48 Score=29.36 Aligned_cols=63 Identities=11% Similarity=0.030 Sum_probs=43.4
Q ss_pred eeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhCCCC-CCCeEEEecCCCCcc--ccCCCCchhhhCC
Q 022009 231 TSVQIRLADGTRLIAHFNLHHTISDIHSFIDASRPGT-ARNYQLQMMGFPPKV--LADRTQTIEQAGL 295 (304)
Q Consensus 231 t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~~~~-~~~f~L~t~~fP~k~--l~d~s~TL~eagL 295 (304)
..|.|.|+||+ +...+..+.|++||.+-|.....-. ..-|.|... -+... +-|.+.+|.+.+.
T Consensus 2 i~~~V~l~d~~-~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~-~~~~~~~wLd~~~~l~~q~~ 67 (294)
T 1ef1_A 2 ISVRVTTMDAE-LEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQ-DTKGFSTWLKLNKKVTAQDV 67 (294)
T ss_dssp EEEEEEETTEE-EEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEE-BTTSCEEECCSSSBGGGSCB
T ss_pred EEEEEEECCce-EEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEE-CCCCceeecccccCHHhhcc
Confidence 46899999994 6799999999999999998754222 345777642 23222 2355677777643
No 127
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=27.16 E-value=2.2e+02 Score=22.16 Aligned_cols=70 Identities=16% Similarity=0.118 Sum_probs=50.1
Q ss_pred CCceeEEEEcCCCCEEEEecCCCCCHHHHHHHHHhhC---CC-----CCCCeEEEec-C-CCCccccCCCCchhhhCCCC
Q 022009 228 LPSTSVQIRLADGTRLIAHFNLHHTISDIHSFIDASR---PG-----TARNYQLQMM-G-FPPKVLADRTQTIEQAGLAN 297 (304)
Q Consensus 228 ~p~t~IqIRl~dG~rl~~rFn~s~TV~dvr~fv~~~~---~~-----~~~~f~L~t~-~-fP~k~l~d~s~TL~eagL~n 297 (304)
...+.|-+=||+|-.+.++++.+.||.+|..-|-... |- ....|..... . .=.-+|.|+++-|-+..+.=
T Consensus 17 ~~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf~ 96 (108)
T 2v1y_A 17 PPRILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLFQ 96 (108)
T ss_dssp CSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBSS
T ss_pred CCcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEeccccc
Confidence 3668888999999999999999999999987655431 11 1344554332 3 33345779999999988873
No 128
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=24.96 E-value=64 Score=30.05 Aligned_cols=45 Identities=11% Similarity=0.022 Sum_probs=36.1
Q ss_pred eeEEEEcCCCC----EEEEecCCCCCHHHHHHHHHhhCCCC-CCCeEEEe
Q 022009 231 TSVQIRLADGT----RLIAHFNLHHTISDIHSFIDASRPGT-ARNYQLQM 275 (304)
Q Consensus 231 t~IqIRl~dG~----rl~~rFn~s~TV~dvr~fv~~~~~~~-~~~f~L~t 275 (304)
..|+|.|+||+ ....+|..+.|++||.+-|.....-. ..-|-|..
T Consensus 8 ~~l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~ 57 (375)
T 2al6_A 8 KVFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRL 57 (375)
T ss_dssp EEECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEE
T ss_pred ceEEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEE
Confidence 45679999998 99999999999999999998865332 34578864
No 129
>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes}
Probab=20.93 E-value=66 Score=29.30 Aligned_cols=38 Identities=18% Similarity=0.472 Sum_probs=23.6
Q ss_pred ceEEEEEeccceeecCCCCccCCChhhHHHHHHHHcCCCCccccCCCCCCceEEEEe
Q 022009 116 IVHNIVFWANGFTVNDGPLRRLDDPENASFLESIKKSECPKELEPADKRSSVHVNLI 172 (304)
Q Consensus 116 v~~~It~w~nGF~VdDGpfR~yddP~n~~FL~~I~~G~~P~EL~~~~~~~~V~v~v~ 172 (304)
-.++||||..+ ++...++++.|-+ ++...+|+ |.|+++
T Consensus 28 gk~~it~W~~~------------~~~~~~~~~~~i~-----~F~~~~p~--i~V~~~ 65 (433)
T 4gqo_A 28 GKTKVTFWAAP------------NPTQVKYWDEMAK-----AYEKENPD--VTIEVS 65 (433)
T ss_dssp -CEEEEEEECS------------CHHHHHHHHHHHH-----HHHHHCTT--EEEEEE
T ss_pred CCEEEEEEeCC------------CchHHHHHHHHHH-----HHHHHCcC--eEEEEE
Confidence 35789999532 3556677777654 34566776 666665
No 130
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=20.23 E-value=67 Score=24.93 Aligned_cols=38 Identities=16% Similarity=0.074 Sum_probs=21.9
Q ss_pred ceEEEEEeccceeecCCCCccC---CChhhHHHHHHHHcCC
Q 022009 116 IVHNIVFWANGFTVNDGPLRRL---DDPENASFLESIKKSE 153 (304)
Q Consensus 116 v~~~It~w~nGF~VdDGpfR~y---ddP~n~~FL~~I~~G~ 153 (304)
..+.|+|||||=....|--... .-+.-.+||++|.+-.
T Consensus 13 ~pk~I~v~rNGD~~~~g~~v~i~~~~~~sfe~lL~~lT~~v 53 (108)
T 2dnf_A 13 EPCTIFLIANGDLINPASRLLIPRKTLNQWDHVLQMVTEKI 53 (108)
T ss_dssp CCEEEEECBTTCSSSCCEEEEECHHHHTCHHHHHHHHHHHC
T ss_pred cceEEEEEeCCCCCCCCEEEEECCccccCHHHHHHHHHHhh
Confidence 3579999999943322211111 1124578898887643
Done!