BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022010
(304 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 131/305 (42%), Gaps = 40/305 (13%)
Query: 6 VREFLSGALAGAMTKAVLAPLETIRTRMVVGVGSKNISGS---------FIEVIEQQGWQ 56
+++FL+G +A A++K +AP+E ++ + V SK IS + + ++QG+
Sbjct: 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 67
Query: 57 GLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWI 116
W GN N++R PTQA+ + K+ ++ Q W
Sbjct: 68 SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQ-----------------FWR 110
Query: 117 SPXXXXXXXXXXXSTLAC--HPLEVLKDRLT------VSHDVYPSLSIAISKIYKEGGIG 168
+T C +PL+ + RL + + L I+KI+K G+
Sbjct: 111 YFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLR 170
Query: 169 AFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTASTIS 228
Y G + ++ G++ Y Y+ +Y+T K + KN + M+A A A +S
Sbjct: 171 GLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHII-VSWMIAQTVTA--VAGLVS 227
Query: 229 FPLEVARKRLMVGALQGKCPPHMAAALA---EVIREEGLMGLYRGWGASCLKVMPSSGIT 285
+P + R+R+M+ + + + ++ ++EG ++G ++ L+ M + +
Sbjct: 228 YPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVL 287
Query: 286 WMFYE 290
++ E
Sbjct: 288 VLYDE 292
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 14/181 (7%)
Query: 130 STLACHPLEVLKDRLTVSH--------DVYPSLSIAISKIYKEGGIGAFYAGISPTLIGM 181
S A P+E +K L V H Y + + +I KE G +F+ G +I
Sbjct: 21 SKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRY 80
Query: 182 LPYSTCYYFMYETLKKKYCNSKNKRS---LNRPEMLALGALAGFTASTISFPLEVARKRL 238
P + + K+ + ++ LA G AG T+ +PL+ AR RL
Sbjct: 81 FPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRL 140
Query: 239 MVGALQGKCPPH---MAAALAEVIREEGLMGLYRGWGASCLKVMPSSGITWMFYEAWKDI 295
+G + + ++ + +GL GLY+G+ S ++ + Y+ K +
Sbjct: 141 AADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGM 200
Query: 296 L 296
L
Sbjct: 201 L 201
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 260 REEGLMGLYRGWGASCLKVMPSSGITWMFYEAWKDILL 297
+E+G + +RG A+ ++ P+ + + F + +K I L
Sbjct: 62 KEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFL 99
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/308 (20%), Positives = 119/308 (38%), Gaps = 42/308 (13%)
Query: 8 EFLSGALAGAMTKAVLAPLETIRTRMVVGVGS------------KNISGSFIEVIEQQGW 55
+FL A + + PL+T + R+ + S + + G+ + ++ +G
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP 63
Query: 56 QGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSW 115
+ L+ G + R + ++ +G ++ VK+ T E IG L+ S +
Sbjct: 64 RSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAG--------IGSRLLAGSTTG 115
Query: 116 ISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSHDV-----YPSLSIAISKIYKEGGIGAF 170
+ P +V+K R Y S A I +E GI
Sbjct: 116 ------------ALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGL 163
Query: 171 YAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTASTISFP 230
+ G SP + + Y+ +K + N + + P AGF + I+ P
Sbjct: 164 WKGTSPNVARNAIVNCAELVTYDLIKDTLLKA-NLMTDDLPCHFTSAFGAGFCTTVIASP 222
Query: 231 LEVARKRLMVGAL-QGKCPPHMAAALAEVIREEGLMGLYRGWGASCLKVMPSSGITWMFY 289
++V + R M AL Q H A + +R+EG Y+G+ S L++ + + ++ Y
Sbjct: 223 VDVVKTRYMNSALGQYHSAGHCALTM---LRKEGPRAFYKGFMPSFLRLGSWNVVMFVTY 279
Query: 290 EAWKDILL 297
E K L+
Sbjct: 280 EQLKRALM 287
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 8 EFLSGALAGAMTKAVLAPLETIRTR-MVVGVGSKNISGS-FIEVIEQQGWQGLWAGNGIN 65
F S AG T + +P++ ++TR M +G + +G + ++ ++G + + G +
Sbjct: 205 HFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPS 264
Query: 66 MLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECP 100
LR+ + T+E +KRA+ A + E P
Sbjct: 265 FLRLGSWNVVMFVTYEQLKRALMAA---YQSREAP 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,345,757
Number of Sequences: 62578
Number of extensions: 306322
Number of successful extensions: 583
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 9
length of query: 304
length of database: 14,973,337
effective HSP length: 98
effective length of query: 206
effective length of database: 8,840,693
effective search space: 1821182758
effective search space used: 1821182758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)