Query 022010
Match_columns 304
No_of_seqs 146 out of 1899
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 12:39:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 1.5E-55 5E-60 381.9 24.1 275 3-296 5-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 7.6E-56 2.6E-60 384.6 21.6 269 7-298 3-288 (303)
3 1okc_A ADP, ATP carrier protei 100.0 4.7E-36 1.6E-40 259.5 17.2 184 116-299 7-204 (297)
4 2lck_A Mitochondrial uncouplin 100.0 3.8E-36 1.3E-40 260.7 15.5 180 119-300 4-196 (303)
5 3tgu_G UQCRQ, mitochondrial ub 37.1 22 0.00075 23.3 2.3 40 263-302 33-72 (81)
6 1pp9_G Ubiquinol-cytochrome C 37.0 25 0.00084 23.0 2.6 41 263-303 33-73 (81)
7 3f2e_A SIRV coat protein; four 22.8 19 0.00063 23.1 0.1 37 144-180 1-41 (100)
8 3cx5_H Cytochrome B-C1 complex 19.3 55 0.0019 22.0 1.8 38 262-299 42-79 (93)
9 2acm_A Mucin-1; auto-catalytic 15.8 37 0.0013 20.6 0.3 20 40-59 40-59 (66)
10 1y9i_A Low temperature require 13.3 4.2E+02 0.014 20.0 5.6 43 183-225 111-157 (178)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.5e-55 Score=381.94 Aligned_cols=275 Identities=22% Similarity=0.410 Sum_probs=236.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhhchHHHhHHHHhcCC---------CCCChHHHHHHHHHhhccceeccccchhhhhhccch
Q 022010 3 VREVREFLSGALAGAMTKAVLAPLETIRTRMVVGV---------GSKNISGSFIEVIEQQGWQGLWAGNGINMLRIIPTQ 73 (304)
Q Consensus 3 ~~~~~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~---------~~~~~~~~~~~i~~~~G~~~ly~G~~~~l~~~~~~~ 73 (304)
.+.++++++|++|++++.++++|+|+||+|+|++. .+.+..+++++++++||++|||||+.+++++.++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 45678999999999999999999999999999864 367899999999999999999999999999999999
Q ss_pred hhhHhhHHHHHHHHhHhhhhhhcccCCcccCCCCcccccccchhhHHHHhhHHHHHHHhhcccHHHHHHHHHhcC-----
Q 022010 74 AIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPVAVAGAAAGVVSTLACHPLEVLKDRLTVSH----- 148 (304)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~v~~P~d~ik~r~q~~~----- 148 (304)
+++|.+||.+++.+....+ +. ..........+++|++||+++.++++|+|++|+|+|++.
T Consensus 85 ~~~f~~ye~~k~~~~~~~~-------------~~--~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~ 149 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVD-------------RH--KQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAA 149 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCC-------------TT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred HHHHHHHHHHHHHhccccC-------------cc--cchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCc
Confidence 9999999999985433110 00 001122355678999999999999999999999999974
Q ss_pred -CCCCCHHHHHHHHHHhcchhhcccChhhhhhccccchhHHHHHHHHHHHHhhcccCCCCCChhHHHHHHHHHHHhHhhh
Q 022010 149 -DVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTASTI 227 (304)
Q Consensus 149 -~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 227 (304)
.+|++.++++++++++||+++||||+.|++++++|+++++|.+||.+++.+.+.. +.+....+++|++|+++++++
T Consensus 150 ~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~---~~~~~~~~~~g~~ag~~a~~~ 226 (297)
T 1okc_A 150 QREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK---NVHIIVSWMIAQTVTAVAGLV 226 (297)
T ss_dssp TCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG---CSCHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC---CccHHHHHHHHHHHHHHHHHh
Confidence 3689999999999999999999999999999999999999999999999765432 345667799999999999999
Q ss_pred hccHHHHHHHHhcCccc---CCCCccHHHHHHHHHHhhcccccccchHhhHhhhhhhhhHHHHHHHHHHHhh
Q 022010 228 SFPLEVARKRLMVGALQ---GKCPPHMAAALAEVIREEGLMGLYRGWGASCLKVMPSSGITWMFYEAWKDIL 296 (304)
Q Consensus 228 ~~P~d~vk~r~q~~~~~---~~~~~~~~~~~~~~~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 296 (304)
++|+|+||+|||.+... ...|.++++|+++++++||+++||||+.+++++. +..+++|.+||.+|+++
T Consensus 227 t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 227 SYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred cChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 99999999999986432 2368999999999999999999999999999996 56789999999998763
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=7.6e-56 Score=384.60 Aligned_cols=269 Identities=21% Similarity=0.348 Sum_probs=242.5
Q ss_pred HHHHHHHHHHHHHHHhhchHHHhHHHHhcCC------------CCCChHHHHHHHHHhhccceeccccchhhhhhccchh
Q 022010 7 REFLSGALAGAMTKAVLAPLETIRTRMVVGV------------GSKNISGSFIEVIEQQGWQGLWAGNGINMLRIIPTQA 74 (304)
Q Consensus 7 ~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~------------~~~~~~~~~~~i~~~~G~~~ly~G~~~~l~~~~~~~~ 74 (304)
.++++|++|++++.++++|+|+||+|+|++. .+.+..+++++++++||+++||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 4789999999999999999999999999864 3578999999999999999999999999999999999
Q ss_pred hhHhhHHHHHHHHhHhhhhhhcccCCcccCCCCcccccccchhhHHHHhhHHHHHHHhhcccHHHHHHHHHhcCC-----
Q 022010 75 IELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPVAVAGAAAGVVSTLACHPLEVLKDRLTVSHD----- 149 (304)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~v~~P~d~ik~r~q~~~~----- 149 (304)
++|.+||.+++.+.+. .+. ......+++|++||+++.++++|+|++|+|+|++..
T Consensus 83 i~f~~ye~~k~~~~~~-------------~~~-------~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~ 142 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKG-------------SEH-------AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGR 142 (303)
T ss_dssp HTTTHHHHHHHHHSCC-------------CSS-------CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSS
T ss_pred HHHHHHHHHHHHHhcC-------------CcC-------CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCC
Confidence 9999999999887531 000 224567889999999999999999999999999753
Q ss_pred CCCCHHHHHHHHHHhcchhhcccChhhhhhccccchhHHHHHHHHHHHHhhcccCCCCCChhHHHHHHHHHHHhHhhhhc
Q 022010 150 VYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTASTISF 229 (304)
Q Consensus 150 ~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 229 (304)
.|++.++++++|+++||+++||||+.|.+++++|+++++|.+||.+++.+.+... ...+....+++|++||++++++++
T Consensus 143 ~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~-~~~~~~~~~~~g~~ag~~~~~~~~ 221 (303)
T 2lck_A 143 RYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL-MTDDLPCHFTSAFGAGFCTTVIAS 221 (303)
T ss_dssp SCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS-CCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999999999999999999999999999998865432 234566789999999999999999
Q ss_pred cHHHHHHHHhcCcccCCCCccHHHHHHHHHHhhcccccccchHhhHhhhhhhhhHHHHHHHHHHHhhcC
Q 022010 230 PLEVARKRLMVGALQGKCPPHMAAALAEVIREEGLMGLYRGWGASCLKVMPSSGITWMFYEAWKDILLP 298 (304)
Q Consensus 230 P~d~vk~r~q~~~~~~~~~~~~~~~~~~~~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 298 (304)
|+|+||+|||.+. ...|.++++|+++++++||++|||||+.+++++.+|..+++|.+||.+|+++..
T Consensus 222 P~dvvktrlq~~~--~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 222 PVDVVKTRYMNSA--LGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp HHHHHHHHHTTCC--SSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHhcc--ccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999864 346899999999999999999999999999999999999999999999998764
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=4.7e-36 Score=259.47 Aligned_cols=184 Identities=23% Similarity=0.362 Sum_probs=161.8
Q ss_pred hhhHHHHhhHHHHHHHhhcccHHHHHHHHHhcC--------CCCCCHHHHHHHHHHhcchhhcccChhhhhhccccchhH
Q 022010 116 ISPVAVAGAAAGVVSTLACHPLEVLKDRLTVSH--------DVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTC 187 (304)
Q Consensus 116 ~~~~~~~g~~a~~~~~~v~~P~d~ik~r~q~~~--------~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~ 187 (304)
.+..+++|++||+++.++++|+|++|+|+|++. ..|++.++++++++++||+++||||+.+.+++++|+.++
T Consensus 7 ~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~ 86 (297)
T 1okc_A 7 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQAL 86 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHH
Confidence 345678999999999999999999999999974 268999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCC---ChhHHHHHHHHHHHhHhhhhccHHHHHHHHhcCccc---CCCCccHHHHHHHHHHh
Q 022010 188 YYFMYETLKKKYCNSKNKRSL---NRPEMLALGALAGFTASTISFPLEVARKRLMVGALQ---GKCPPHMAAALAEVIRE 261 (304)
Q Consensus 188 ~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~P~d~vk~r~q~~~~~---~~~~~~~~~~~~~~~~~ 261 (304)
+|.+||.+++.+.+..+.... .....+++|++||+++.++++|+|+||+|||.+... ...|.+.++|+++++++
T Consensus 87 ~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~ 166 (297)
T 1okc_A 87 NFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKS 166 (297)
T ss_dssp HHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHh
Confidence 999999999954332221111 235578999999999999999999999999986432 24689999999999999
Q ss_pred hcccccccchHhhHhhhhhhhhHHHHHHHHHHHhhcCC
Q 022010 262 EGLMGLYRGWGASCLKVMPSSGITWMFYEAWKDILLPL 299 (304)
Q Consensus 262 ~G~~~ly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 299 (304)
||+++||||+.+++++.+|..++.|.+||.+|+.+.+.
T Consensus 167 eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~ 204 (297)
T 1okc_A 167 DGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP 204 (297)
T ss_dssp HCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG
T ss_pred ccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999988654
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.8e-36 Score=260.72 Aligned_cols=180 Identities=21% Similarity=0.343 Sum_probs=164.6
Q ss_pred HHHHhhHHHHHHHhhcccHHHHHHHHHhcCC-----------CCCCHHHHHHHHHHhcchhhcccChhhhhhccccchhH
Q 022010 119 VAVAGAAAGVVSTLACHPLEVLKDRLTVSHD-----------VYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTC 187 (304)
Q Consensus 119 ~~~~g~~a~~~~~~v~~P~d~ik~r~q~~~~-----------~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~ 187 (304)
.+++|++||+++.++++|+|++|+|+|++.. +|++.++++++++++||+++||||+.+.+++.+|+.++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999999743 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCCChhHHHHHHHHHHHhHhhhhccHHHHHHHHhcCccc--CCCCccHHHHHHHHHHhhccc
Q 022010 188 YYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTASTISFPLEVARKRLMVGALQ--GKCPPHMAAALAEVIREEGLM 265 (304)
Q Consensus 188 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~P~d~vk~r~q~~~~~--~~~~~~~~~~~~~~~~~~G~~ 265 (304)
+|.+||.+++.+.+..+ ..+....+++|++||+++.++++|+|+||+|||.+... ...|.+.++++++++++||++
T Consensus 84 ~f~~ye~~k~~~~~~~~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~ 161 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSE--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIR 161 (303)
T ss_dssp TTTHHHHHHHHHSCCCS--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhcCCc--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChh
Confidence 99999999999865422 36677789999999999999999999999999997532 346899999999999999999
Q ss_pred ccccchHhhHhhhhhhhhHHHHHHHHHHHhhcCCC
Q 022010 266 GLYRGWGASCLKVMPSSGITWMFYEAWKDILLPLK 300 (304)
Q Consensus 266 ~ly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 300 (304)
+||||+.+++++.+|..++.|.+||.+|+.+....
T Consensus 162 glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~ 196 (303)
T 2lck_A 162 GLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN 196 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred hhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999987654
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=37.10 E-value=22 Score=23.28 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=30.1
Q ss_pred cccccccchHhhHhhhhhhhhHHHHHHHHHHHhhcCCCCC
Q 022010 263 GLMGLYRGWGASCLKVMPSSGITWMFYEAWKDILLPLKPG 302 (304)
Q Consensus 263 G~~~ly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 302 (304)
|+-..+|-+..+++..+|..++...+|+..++..+....+
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rK 72 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRK 72 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444556667788999999999999999988876554443
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=37.01 E-value=25 Score=23.03 Aligned_cols=41 Identities=20% Similarity=0.167 Sum_probs=32.0
Q ss_pred cccccccchHhhHhhhhhhhhHHHHHHHHHHHhhcCCCCCC
Q 022010 263 GLMGLYRGWGASCLKVMPSSGITWMFYEAWKDILLPLKPGP 303 (304)
Q Consensus 263 G~~~ly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 303 (304)
|+...+|-+.-+++..+|..++...+|+..++..+....+.
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rKn 73 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKN 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCCC
Confidence 45556777778888999999999999999888876555443
No 7
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=22.80 E-value=19 Score=23.11 Aligned_cols=37 Identities=16% Similarity=0.341 Sum_probs=19.6
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcchh----hcccChhhhhhc
Q 022010 144 LTVSHDVYPSLSIAISKIYKEGGIG----AFYAGISPTLIG 180 (304)
Q Consensus 144 ~q~~~~~~~~~~~~~~~i~~~~G~~----~ly~G~~~~~~~ 180 (304)
||++-+++.+.-+-...++.+.|+. .+|.|+.....|
T Consensus 1 mqtnvpkftsvne~vsavltqygvtgpnraiyqgfglkvar 41 (100)
T 3f2e_A 1 MQTNVPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVAR 41 (100)
T ss_dssp -------CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHH
T ss_pred CCCCCccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHH
Confidence 5666677777777777777777764 366666554443
No 8
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=19.27 E-value=55 Score=21.96 Aligned_cols=38 Identities=18% Similarity=0.408 Sum_probs=31.4
Q ss_pred hcccccccchHhhHhhhhhhhhHHHHHHHHHHHhhcCC
Q 022010 262 EGLMGLYRGWGASCLKVMPSSGITWMFYEAWKDILLPL 299 (304)
Q Consensus 262 ~G~~~ly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 299 (304)
.|+-..+|-+.-+++..+|..++...+|+..++..+..
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l 79 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFL 79 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHH
Confidence 46777888888899999999999999998888776443
No 9
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=15.78 E-value=37 Score=20.56 Aligned_cols=20 Identities=35% Similarity=0.693 Sum_probs=16.4
Q ss_pred CChHHHHHHHHHhhccceec
Q 022010 40 KNISGSFIEVIEQQGWQGLW 59 (304)
Q Consensus 40 ~~~~~~~~~i~~~~G~~~ly 59 (304)
.++...+.+|++++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 35677888999999999885
No 10
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=13.35 E-value=4.2e+02 Score=20.02 Aligned_cols=43 Identities=9% Similarity=-0.065 Sum_probs=27.6
Q ss_pred cchhHHHHHHHHHHHHhhcccC----CCCCChhHHHHHHHHHHHhHh
Q 022010 183 PYSTCYYFMYETLKKKYCNSKN----KRSLNRPEMLALGALAGFTAS 225 (304)
Q Consensus 183 ~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~a~~~~~ 225 (304)
....+.|-.||..|....+..+ ..-......+++|+.|+++..
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~ 157 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASR 157 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHH
Confidence 3567778888988865433222 223456777888888877553
Done!